Psyllid ID: psy5021
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1021 | 2.2.26 [Sep-21-2011] | |||||||
| Q05FI2 | 681 | Elongation factor G OS=Ca | yes | N/A | 0.637 | 0.955 | 0.686 | 0.0 | |
| Q1R0H8 | 706 | Elongation factor G OS=Ch | yes | N/A | 0.639 | 0.924 | 0.503 | 0.0 | |
| Q1LSY5 | 705 | Elongation factor G OS=Ba | yes | N/A | 0.636 | 0.921 | 0.500 | 0.0 | |
| Q8D3H2 | 705 | Elongation factor G OS=Wi | yes | N/A | 0.641 | 0.929 | 0.516 | 0.0 | |
| Q7MA53 | 693 | Elongation factor G OS=Wo | yes | N/A | 0.627 | 0.924 | 0.500 | 0.0 | |
| A7I3T6 | 691 | Elongation factor G OS=Ca | yes | N/A | 0.635 | 0.939 | 0.491 | 0.0 | |
| Q7VJ85 | 692 | Elongation factor G OS=He | yes | N/A | 0.634 | 0.936 | 0.499 | 0.0 | |
| Q2RFP4 | 692 | Elongation factor G OS=Mo | yes | N/A | 0.625 | 0.923 | 0.490 | 0.0 | |
| Q21M89 | 701 | Elongation factor G 1 OS= | yes | N/A | 0.640 | 0.932 | 0.479 | 0.0 | |
| Q605A9 | 698 | Elongation factor G 2 OS= | yes | N/A | 0.639 | 0.935 | 0.480 | 0.0 |
| >sp|Q05FI2|EFG_CARRP Elongation factor G OS=Carsonella ruddii (strain PV) GN=fusA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/657 (68%), Positives = 541/657 (82%), Gaps = 6/657 (0%)
Query: 3 NKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITIT 62
N + RNIGIIAHVDAGKTTTTERILF+SG SHKIGEVH G TITDWM+QEQERGITIT
Sbjct: 2 NDIKNIRNIGIIAHVDAGKTTTTERILFFSGFSHKIGEVHTGNTITDWMKQEQERGITIT 61
Query: 63 SASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW 122
SASV+ FW+ N + IN+IDTPGHVDFTIEVERSLRVLDGAVI+ICASSGIQPQTETVW
Sbjct: 62 SASVTFFWKTNFYNSSINLIDTPGHVDFTIEVERSLRVLDGAVILICASSGIQPQTETVW 121
Query: 123 FQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIIN 182
QS+K+ +PK++FVNK+DRIGA Y + I +IKKKF C +L IN NIGIE ++ GI+D+IN
Sbjct: 122 NQSEKFNIPKILFVNKLDRIGAKYLSIIENIKKKFFCNILIINLNIGIENSFSGIIDLIN 181
Query: 183 KKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242
K W + + I+NI + Y ++LETLS D+ FLEKYIN+N+SI DI SI
Sbjct: 182 MKELIWNNSQLEIRNITNKNFDISNKYRNILLETLSEYDDIFLEKYINSNFSIKDIIESI 241
Query: 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNN---DYNINLNSNKFV 299
RKLV+ NKIIPI CGSSLKNKGIEFLL+SI +LPSP D+ KN +Y++N+ S KF+
Sbjct: 242 RKLVILNKIIPIACGSSLKNKGIEFLLDSIVNFLPSPIDIGIKNVSNINYSVNIKS-KFL 300
Query: 300 SLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAH 359
+L+FK+F+DP+LG LSFIRIYSG I+ G +++N++K +KEKIFRI+RMFANSKKD+N A
Sbjct: 301 ALLFKVFNDPYLGLLSFIRIYSGKIEPGQIIFNNSKNIKEKIFRIIRMFANSKKDLNIAS 360
Query: 360 FGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKF 419
GDIVV++GLK S TGDTL +E + LE I P+PVIS+S+EPI KND EKLLN++ KF
Sbjct: 361 AGDIVVLIGLKNSFTGDTLSFDNEKVLLEKINIPLPVISVSVEPIVKNDYEKLLNLINKF 420
Query: 420 CKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIV 479
CKEDPSLL IN NTGE ILSGMGELHLEII+DRI E NIKTK SKPQVSYKESIKK +
Sbjct: 421 CKEDPSLLFKINENTGELILSGMGELHLEIIIDRINNEFNIKTKTSKPQVSYKESIKKTI 480
Query: 480 TQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQ 539
QEGKYIKQ+GG+GQYGHVV++IEPI +E K++FIFK E++GG IPKE+ +IEKGI+ Q
Sbjct: 481 IQEGKYIKQTGGRGQYGHVVLKIEPILIE-KDDFIFKIEVVGGVIPKEYFLSIEKGILEQ 539
Query: 540 INYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVE 599
I GVVLGYPV KIK+ L+NGSFH VDSSEYAFKNAA+IALK+ALKKANS++LEPIMKVE
Sbjct: 540 IKCGVVLGYPVTKIKITLINGSFHPVDSSEYAFKNAASIALKEALKKANSFLLEPIMKVE 599
Query: 600 VNLPSEFLGIVVGDINKKRGIINTIID-HENFKIINSYIPLRELFGYSTDLRSNTKG 655
+ P E+LGIV+ DI+KKRG I +++D + N KIINS IPLRELFGYSTDLRSNTKG
Sbjct: 600 IISPKEYLGIVISDISKKRGNIISVVDNNNNLKIINSLIPLRELFGYSTDLRSNTKG 656
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Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Carsonella ruddii (strain PV) (taxid: 387662) |
| >sp|Q1R0H8|EFG_CHRSD Elongation factor G OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/677 (50%), Positives = 485/677 (71%), Gaps = 24/677 (3%)
Query: 2 KNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI 61
K + +RNIGI+AHVDAGKTTTTER+LFY+G SHK+GEVH G DWM+QEQERGITI
Sbjct: 4 KTPLKRYRNIGIVAHVDAGKTTTTERVLFYTGLSHKVGEVHDGAATMDWMEQEQERGITI 63
Query: 62 TSASVSIFWE-VNKF--KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
TSA+ + FW+ +NK ++ INIIDTPGHVDFTIEVERSLRVLDGAV+++C SSG+QPQT
Sbjct: 64 TSAATTCFWQGMNKQFDEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVLCGSSGVQPQT 123
Query: 119 ETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIV 178
ETVW Q+ KY+VP+M+FVNKMDR GA+Y + +K+K +PI N G E++++G++
Sbjct: 124 ETVWRQANKYEVPRMVFVNKMDRAGADYFMVLDQLKQKLGANTVPIQINWGAEDDFKGVI 183
Query: 179 DIINKKSFFWKE-----NSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYIN-NN 232
D+I K W E N +++ D+ + SA Y E M+E + E ++KY+ +
Sbjct: 184 DLIQMKGILWDEANHGMNYELVEIPDELKESAAKY-REQMVEAAAEASEELMDKYLEEGD 242
Query: 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV-----DFKNN 287
S DIK +R+ L N+I+ + CGS+ KNKG++ +L+ + EY+PSP +V + +
Sbjct: 243 LSEADIKAGLRRRTLDNEIVLVTCGSAFKNKGVQAVLDGVIEYMPSPTEVKAIEGELDDK 302
Query: 288 DYNINL----NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFR 343
D I +S F +L FKI DPF+G+L+FIR+YSG +K GD ++NS K KE++ R
Sbjct: 303 DGTIATREADDSAPFAALAFKIATDPFVGTLTFIRVYSGVLKSGDSIFNSVKSKKERVGR 362
Query: 344 ILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEP 403
I++M +NS+++I + + GDI +GLK+ +TGDTLC L++ I LE +E P PVIS+++EP
Sbjct: 363 IVQMHSNSREEIKEVYAGDIAACIGLKDVTTGDTLCDLNDKIILERMEFPDPVISVAVEP 422
Query: 404 IFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTK 463
K DQEK+ L K +EDPS + + TG+TI+SGMGELHL+IIVDR+ +E +
Sbjct: 423 KSKPDQEKMGTALGKLAQEDPSFRVKTDEETGQTIISGMGELHLDIIVDRLRREFKVDAN 482
Query: 464 ISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKE-----NFIFKSE 518
I KPQV+Y+E+I+ V QEGK+++QSGG+GQYGHV++RIEP++ E+K F F SE
Sbjct: 483 IGKPQVAYRETIRASVEQEGKFVRQSGGRGQYGHVLLRIEPLTAEDKGEDEDMTFKFASE 542
Query: 519 IIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAI 578
I+GG +PKE++PA+EKG Q+ GV+ GYP+I +KV L +GS+H VDS+E AFK A+++
Sbjct: 543 IVGGVVPKEYVPAVEKGAYEQLQNGVIAGYPMIDVKVTLFDGSYHDVDSNETAFKVASSM 602
Query: 579 ALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIP 638
A+K+ KA + +LEP+MKVEV P EF+G V+GD+N++RG++ + D + KII + +P
Sbjct: 603 AIKEGAPKAKAVLLEPVMKVEVVTPEEFMGDVMGDLNRRRGLVQGMDDSPSGKIIRATVP 662
Query: 639 LRELFGYSTDLRSNTKG 655
L E+FGY+TDLRS T+G
Sbjct: 663 LAEMFGYATDLRSQTQG 679
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Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) (taxid: 290398) |
| >sp|Q1LSY5|EFG_BAUCH Elongation factor G OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/671 (50%), Positives = 473/671 (70%), Gaps = 21/671 (3%)
Query: 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
+ Y+RNIGI AH+DAGKTTTTERILFY+G +HKIGEVHHG DWM QEQERGITITSA
Sbjct: 7 IAYYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHHGAATMDWMAQEQERGITITSA 66
Query: 65 SVSIFWE--VNKF-KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
+ + FW +F + INIIDTPGHVDFTIEVERS+R+LDG V+I CA G+QPQ+ETV
Sbjct: 67 ATTCFWSGMAKQFNAHRINIIDTPGHVDFTIEVERSMRILDGVVMIYCAVGGVQPQSETV 126
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII 181
W Q+ KYKVP++ FVNKMDR+GANY + I+ + + +PI IG EEN+ G++D++
Sbjct: 127 WRQANKYKVPRIAFVNKMDRMGANYLRVVEQIRTRLSAKPVPIQLAIGAEENFTGVIDLV 186
Query: 182 NKKSFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNY-SIN 236
K+ W E S NI + L + +++ ++E +EKY+N+ S
Sbjct: 187 KMKAIHWNEADQGISFTYGNIPTEMLDLAEKWHQNLVEIAVEASTELMEKYLNSEIISEE 246
Query: 237 DIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNND-------- 288
+IK S+R+LVL N II + CGS+ KNKG++ LL+++ EYLP+P DV N
Sbjct: 247 EIKASLRQLVLNNDIILVTCGSAFKNKGVQALLDAVIEYLPAPTDVSIVNRMLTVENKQT 306
Query: 289 --YNINLNSNK--FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRI 344
Y+ +L+S+K F +L FKI DPF+G+L+F R+YSG + GD+V+NS K+ +E+ RI
Sbjct: 307 KIYDNSLSSDKAPFSALAFKIATDPFVGNLTFFRVYSGMVSSGDMVFNSVKEKRERFGRI 366
Query: 345 LRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPI 404
++M AN +++I + H GDI +GLK+ +TGDTLC I LE ++ P PVIS+++EP
Sbjct: 367 VQMHANKREEIKEVHAGDIAAAIGLKDVTTGDTLCDPEAPIILEKMDFPEPVISVAVEPK 426
Query: 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464
K DQEK+ L + +EDPS + I+ +GETI++GMGELHLEI++DR+ +E N+ +
Sbjct: 427 TKADQEKMGFALNRLAQEDPSFHVWIDEESGETIIAGMGELHLEILIDRMRREFNVLANV 486
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSI 524
KPQV+Y+E+I+ V QEGK+I+QSGG+GQ+GHV +RIEP+ K + F +EI+GG I
Sbjct: 487 GKPQVAYRETIRVTVEQEGKFIRQSGGRGQFGHVWLRIEPMEPGGK-TYEFLNEIVGGVI 545
Query: 525 PKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDAL 584
PKE++PA++KGI Q+ G++ GYP++ ++V + +GS+H VDSSE AFK AA+IA K+
Sbjct: 546 PKEYLPAVDKGIQEQLKSGILAGYPIVDVRVAVFDGSYHEVDSSEMAFKLAASIAFKEGF 605
Query: 585 KKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFG 644
KA +LEPIM+VEV P +++G V+GD+N++RGIIN +ID+ K I +PL E+FG
Sbjct: 606 MKAKPILLEPIMQVEVETPEDYMGDVIGDLNRRRGIINGMIDNTTGKTIRVQVPLSEMFG 665
Query: 645 YSTDLRSNTKG 655
Y+TDLRS T+G
Sbjct: 666 YATDLRSQTQG 676
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Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Baumannia cicadellinicola subsp. Homalodisca coagulata (taxid: 374463) |
| >sp|Q8D3H2|EFG_WIGBR Elongation factor G OS=Wigglesworthia glossinidia brevipalpis GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/674 (51%), Positives = 477/674 (70%), Gaps = 19/674 (2%)
Query: 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
++ +RNIGI AH+DAGKTTTTERILFY+G +HK+GEVHHG+ DWM QEQERGITITSA
Sbjct: 7 IVNYRNIGISAHIDAGKTTTTERILFYTGVNHKLGEVHHGSATMDWMAQEQERGITITSA 66
Query: 65 SVSIFWE--VNKFK-YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
+ + FW N+F + INIIDTPGHVDFTIEVERS+R+LDGA+++ CA G+QPQ+ETV
Sbjct: 67 ATTCFWSGMSNQFSSHRINIIDTPGHVDFTIEVERSMRILDGAIMVYCAVGGVQPQSETV 126
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII 181
W Q+ KY VP++ F+NKMDR GANY N I IK K +PI IG E N+ GI+D+I
Sbjct: 127 WRQANKYNVPRIAFINKMDRTGANYFNVINQIKDKLYANPIPIQLPIGKENNFVGIIDLI 186
Query: 182 NKKSFFWKENSIII----KNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSIND 237
KS +W E I K I KD + + Y ++LET + E EKY+ N + D
Sbjct: 187 KMKSIYWSEIDQGITFEYKEIPKDLMVLSNSYRNILLETSAEASEKLTEKYLYKNLTEQD 246
Query: 238 IKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNK 297
I +R LKN+IIP+ CGS+ KNKGI+ +L+++ YLPSP D+ + + ++ N K
Sbjct: 247 IIEGLRIRSLKNEIIPVTCGSAFKNKGIQSMLDTVINYLPSPKDIKYSKKNKFLSKNYKK 306
Query: 298 ---------FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMF 348
F +L FKI +DPF+G+L+F R+YSG I+ G+ V NS K +E+ RI++M
Sbjct: 307 SILPKDNEPFSALAFKIANDPFVGNLTFFRVYSGKIRSGNTVLNSAKDKQERFGRIVQMH 366
Query: 349 ANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKND 408
AN +++I + GDI +GLK+ +TGDTLC I LE +E P PVIS+++EP K+D
Sbjct: 367 ANKREEIKEVRSGDIAAAIGLKDVTTGDTLCDPLHPIILEKMEFPEPVISVAVEPKTKSD 426
Query: 409 QEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQ 468
QEK+ + L + KEDPS +S + +G+TI+SGMGELHLEI++DR+ +E N+++ + KPQ
Sbjct: 427 QEKMSSALNRLAKEDPSFRVSSDEESGQTIISGMGELHLEILIDRMYREFNVRSNVGKPQ 486
Query: 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPIS---LENKENFIFKSEIIGGSIP 525
VSY+E+IK V +EGK+I+QSGG+GQ+GHV +RIEP +NK N+ F ++I+GG+IP
Sbjct: 487 VSYRETIKSCVEEEGKFIRQSGGRGQFGHVWLRIEPNKSNIAKNKNNYTFINKIVGGAIP 546
Query: 526 KEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALK 585
KEFIPAI+KGI Q++ GV+ GYP++ + V + +GS+H VDSSE AFK AA+IA K A
Sbjct: 547 KEFIPAIDKGIQEQLSNGVLAGYPIVDVCVTVFDGSYHEVDSSEIAFKIAASIAFKSAFM 606
Query: 586 KANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGY 645
KA+ +LEPIMKVEV P+E++G V+GD+N++RGII+ + D KII S IPL E+FGY
Sbjct: 607 KASPILLEPIMKVEVETPNEYMGDVIGDLNRRRGIIDGMQDINMGKIIISKIPLSEMFGY 666
Query: 646 STDLRSNTKGTIGH 659
+TDLRS T+G +
Sbjct: 667 ATDLRSQTQGRASY 680
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Wigglesworthia glossinidia brevipalpis (taxid: 36870) |
| >sp|Q7MA53|EFG_WOLSU Elongation factor G OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/661 (50%), Positives = 468/661 (70%), Gaps = 20/661 (3%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGI AH+DAGKTTTTERILFY+G SHK+GEVH G DWM+QE+ERGITITSA+ +
Sbjct: 11 RNIGIAAHIDAGKTTTTERILFYTGVSHKVGEVHDGAATMDWMEQEKERGITITSAATTC 70
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
FW+ Y +NIIDTPGHVDFTIEVERS+RVLDGAV + C+ G+QPQ+ETVW Q+ KY
Sbjct: 71 FWK----DYQVNIIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQANKY 126
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
VP+M+FVNKMDRIGAN+ N I + +P+ +G E+ ++G++D++ K+ W
Sbjct: 127 GVPRMVFVNKMDRIGANFYNVESQISDRLKARPVPVVIPVGAEDTFKGVIDLLQMKALIW 186
Query: 189 KENSI----IIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDIKNSIR 243
+ ++ I+ I D + + Y E M+E + DE +EKY+N + +IK ++
Sbjct: 187 NDETMGAKYDIEEIPADLVEKANEYREKMIEAAAEQDEALMEKYLNGEELTTEEIKRGLK 246
Query: 244 KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP------YDVDFKNNDYNINLNSN- 296
IIP++CGSS KNKG++ LL+++ +YLP+P + VD K+ I++ S+
Sbjct: 247 IGCHAMAIIPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVADIHGVDAKDETKEISVQSSD 306
Query: 297 --KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKD 354
+F L FKI DPF+G L+F+R+Y G ++ G VYNSTK KE++ R+L+M AN ++D
Sbjct: 307 EGEFAGLAFKIMTDPFVGQLTFVRVYRGSLESGSYVYNSTKGKKERVGRLLKMHANKRED 366
Query: 355 INDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLN 414
I + + G+I VGLKE+ TGDTLCS E + LE +E P PVISI++EP K DQEK+
Sbjct: 367 IKEIYAGEICAFVGLKETLTGDTLCSEKEPVILERMEFPEPVISIAVEPKTKADQEKMGI 426
Query: 415 ILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKES 474
L K +EDPS ++ + TG+TI+SGMGELHLEIIVDR+ +E ++ ++ +PQV+++E+
Sbjct: 427 ALNKLAEEDPSFRVNSDEETGQTIISGMGELHLEIIVDRMKREFKVEAEVGQPQVAFRET 486
Query: 475 IKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEK 534
++K V +E KY KQSGG+GQYGHV I++EP E + + F ++I GG IPKE+IPA++K
Sbjct: 487 VRKAVNKECKYAKQSGGRGQYGHVFIKLEP--QEAGKGYEFVNDISGGVIPKEYIPAVDK 544
Query: 535 GIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEP 594
GI + GV+ GYPV+ KV L +GS+H VDSSE AFK A ++A KDA ++A+ +LEP
Sbjct: 545 GIKEAMQSGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKDAAREASPVLLEP 604
Query: 595 IMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTK 654
IMKVEV +P +++G V+GD+N++RG IN++ D K+IN+++PL E+FGYSTDLRS T+
Sbjct: 605 IMKVEVEVPEDYMGDVIGDLNRRRGQINSMGDRSGIKVINAFVPLAEMFGYSTDLRSATQ 664
Query: 655 G 655
G
Sbjct: 665 G 665
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Wolinella succinogenes (taxid: 844) |
| >sp|A7I3T6|EFG_CAMHC Elongation factor G OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/665 (49%), Positives = 468/665 (70%), Gaps = 16/665 (2%)
Query: 2 KNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI 61
K + RNIGI AH+DAGKTTT+ERILF++G SHKIGE H GT DWM QE+ERGITI
Sbjct: 4 KTPLHMVRNIGIAAHIDAGKTTTSERILFFTGISHKIGETHEGTATMDWMDQEKERGITI 63
Query: 62 TSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
TSA+ + FW + IN+IDTPGHVDFTIEVERS+RVLDGAV + C+ G+QPQ+ETV
Sbjct: 64 TSAATTCFWR----DHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETV 119
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII 181
W Q+ KY VP++ FVNKMDR+GAN+ N IK + +P+ IG E+N++G+VD+I
Sbjct: 120 WRQANKYHVPRIAFVNKMDRVGANFYNVEKQIKDRLKANPVPLQIPIGAEDNFKGVVDLI 179
Query: 182 NKKSFFWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSIND 237
K+ W+ + + ++K+I D Y++ ++E ++ DE +EK+ + SI++
Sbjct: 180 QMKALVWESDEPTNYVVKDIPADLQDKAKEYHDKLVEAVAETDEKLMEKFFDGVELSIDE 239
Query: 238 IKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYN------- 290
IK I+ L I+P++CG++ KNKG++ LL+++ +YLP+P +V Y
Sbjct: 240 IKKGIKTATLSLNIVPMLCGTAFKNKGVQPLLDAVVDYLPAPDEVPNIKGQYENGKEVSV 299
Query: 291 INLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFAN 350
+ + +F +L FKI DPF+G L+F+R+Y G + G VYN+ K KE++ RILRM +N
Sbjct: 300 ESTDDGEFAALGFKIATDPFVGQLTFVRVYRGVLASGSYVYNAGKGKKERVGRILRMHSN 359
Query: 351 SKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQE 410
+++I + + G+I +VGLK++ TGDTL S + + LE +E P PVIS+++EP K DQE
Sbjct: 360 KREEIKELYAGEIGAVVGLKDTLTGDTLASEKDPVILERMEFPDPVISVAVEPKTKADQE 419
Query: 411 KLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVS 470
K+ LQK +EDPS ++ + +G+TI+SGMGELHLEIIVDR+L+E ++ ++ KPQV+
Sbjct: 420 KMGIALQKLAQEDPSFRVATDEESGQTIISGMGELHLEIIVDRMLREFKVEAEVGKPQVA 479
Query: 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIP 530
Y+E+I+K V QE KY KQSGG+GQYGHV +R+EP+ EN+ F ++I GG++PKE+IP
Sbjct: 480 YRETIRKTVEQEYKYAKQSGGRGQYGHVFLRLEPME-PGGENYEFVNDIKGGAVPKEYIP 538
Query: 531 AIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSY 590
A++KG + GV+ GYPV+ IKV L +GS+H VDSSE AFK AA++ K+ +KAN+
Sbjct: 539 AVDKGCQEAMQSGVLAGYPVVDIKVTLFDGSYHEVDSSEMAFKLAASMGFKEGARKANAV 598
Query: 591 ILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLR 650
ILEP+MKVEV P E++G V+GD+NK+RG +N + D KII+++ PL E+FGYSTDLR
Sbjct: 599 ILEPMMKVEVETPEEYMGDVIGDLNKRRGQVNNMSDRGGNKIIDAFCPLAEMFGYSTDLR 658
Query: 651 SNTKG 655
S T+G
Sbjct: 659 SQTQG 663
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) (taxid: 360107) |
| >sp|Q7VJ85|EFG_HELHP Elongation factor G OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/667 (49%), Positives = 466/667 (69%), Gaps = 19/667 (2%)
Query: 2 KNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI 61
K ++ RNIGI AH+DAGKTTT+ERILFY+G SHKIGEVH G DWM+QE+ERGITI
Sbjct: 4 KTPLVRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITI 63
Query: 62 TSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
TSA+ + FW Y IN+IDTPGHVDFTIEVERS+RVLDGA+ + C+ G+QPQ+ETV
Sbjct: 64 TSATTTCFWR----DYQINLIDTPGHVDFTIEVERSMRVLDGAIAVFCSVGGVQPQSETV 119
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII 181
W Q+ KY VP+M+FVNKMDRIGAN+ + IK++ +PIN IG EEN++G++D++
Sbjct: 120 WRQANKYGVPRMVFVNKMDRIGANFYSVESQIKQRLKANPVPINIPIGAEENFKGVIDLV 179
Query: 182 NKKSFFWKENSIIIK----NIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSIN 236
K+ W + S+ K I + + + Y E +LE + DE +EKY+ SI
Sbjct: 180 QMKAIVWNDESMGAKYDVEEIPSELVEKANEYREKLLEAAAEQDEALMEKYLGGEELSIE 239
Query: 237 DIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV-DFKN----NDYNI 291
DIK I+ L +IP++CGSS KNKG++ LL+++ +YLP+P +V + K N+ +
Sbjct: 240 DIKKGIKIGCLNMSLIPMLCGSSFKNKGVQTLLDAVVDYLPAPTEVAEIKGIDPKNESEL 299
Query: 292 NLNSN---KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMF 348
++ S+ F L FKI DPF+G L+F+R Y G ++ G V NSTK KE++ R+L+M
Sbjct: 300 SVESSDDGAFAGLAFKIMTDPFVGQLTFVRAYRGKLESGSYVLNSTKGKKERVGRLLKMH 359
Query: 349 ANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKND 408
+N ++DI + + G+I VGLK++ TGDTLC + LE ++ P PVI I++EP K D
Sbjct: 360 SNKREDIKEIYAGEICAFVGLKDTVTGDTLCDEKVPVILERMDFPEPVIQIAVEPKTKAD 419
Query: 409 QEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQ 468
QEK+ L K +EDPS +S + TG+T++ GMGELHLEIIVDR+ +E ++ ++ +PQ
Sbjct: 420 QEKMSIALSKLAEEDPSFRVSTHEETGQTLIGGMGELHLEIIVDRLKREFKVEAEVGEPQ 479
Query: 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEF 528
V+++E+I+ V QE KY KQSGG+GQYGHV IR+EP E + F + I GG IPKE+
Sbjct: 480 VAFRETIRTAVEQECKYAKQSGGRGQYGHVHIRLEP--KEAGTGYEFVNNISGGVIPKEY 537
Query: 529 IPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588
IPA++KGI + GV+ GYPV+ K+ L +GS+H VDSSE AFK A ++A KDA +KAN
Sbjct: 538 IPAVDKGIQEAMQNGVLAGYPVVDFKITLYDGSYHDVDSSEMAFKIAGSMAFKDACRKAN 597
Query: 589 SYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTD 648
+ +LEP+MKVEV +P E++G V+GD+N++RG IN++ D KI+N+++PL E+FGYSTD
Sbjct: 598 AVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRMGLKIVNAFVPLAEMFGYSTD 657
Query: 649 LRSNTKG 655
LRS T+G
Sbjct: 658 LRSATQG 664
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Helicobacter hepaticus (strain ATCC 51449 / 3B1) (taxid: 235279) |
| >sp|Q2RFP4|EFG_MOOTA Elongation factor G OS=Moorella thermoacetica (strain ATCC 39073) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/661 (49%), Positives = 465/661 (70%), Gaps = 22/661 (3%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGI+AH+DAGKTTTTERILFY+G H++GEVH G DWM QEQERGITITSA+ +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILFYTGRVHRMGEVHDGNATMDWMIQEQERGITITSAATTC 70
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
FW + INIIDTPGHVDFT+EVERSLRVLDGAV + C+ G++PQ+ETVW Q+ KY
Sbjct: 71 FWR----NHRINIIDTPGHVDFTVEVERSLRVLDGAVAVFCSVGGVEPQSETVWRQADKY 126
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
VP++ ++NKMDR+GA++ + I ++ +PI IG E++++G+VD+IN K+ ++
Sbjct: 127 GVPRIAYINKMDRVGADFFRGVRMIAERLGANPVPIQLPIGAEDSFQGMVDLINMKAIYY 186
Query: 189 KENSIIIKNIDKDQLSA-----FDYYNELMLETLSNNDEFFLEKYINNN-YSINDIKNSI 242
+ + +D++ + A Y E +LE ++ +DE + KY+ + +IK I
Sbjct: 187 TDE--LGTTLDEEPIPAEMEDLVQEYREKLLEAVAESDEELMIKYLEGEELTPEEIKAGI 244
Query: 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV--------DFKNNDYNINLN 294
RK + K++P++CGSS KNKG++ LL++I ++LP+P DV + + D + +
Sbjct: 245 RKATIAVKMVPVLCGSSFKNKGVQPLLDAIVDFLPAPTDVPAIQGVDPETGDEDERHSSD 304
Query: 295 SNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKD 354
+ F +L FKI DP++G L+F R+YSG +K G VYNSTK +E+I RILRM AN +++
Sbjct: 305 NEPFAALAFKIMADPYVGKLTFFRVYSGTLKSGSYVYNSTKGRRERIGRILRMHANHREE 364
Query: 355 INDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLN 414
I++A+ GDI VGLKE++TGDTLC I LE +E P PVIS++IEP K DQEK+
Sbjct: 365 IDEAYAGDIAAAVGLKETTTGDTLCDEQHPIVLEAMEFPEPVISVAIEPKTKADQEKMSI 424
Query: 415 ILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKES 474
LQK +EDP+ + + TG+TI+SGMGELHLEIIVDR+L+E + K+ +PQV+YKE+
Sbjct: 425 ALQKLAEEDPTFRMYTDQETGQTIISGMGELHLEIIVDRLLREFKVGAKVGRPQVAYKET 484
Query: 475 IKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEK 534
I++ V EGK+I+Q+GG GQYGHV+I IEP E + + F ++I+GG IPKE+IPA++
Sbjct: 485 IRRPVKAEGKFIRQTGGHGQYGHVIIEIEP--QEPGKGYEFVNKIVGGVIPKEYIPAVDA 542
Query: 535 GIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEP 594
GI + GV+ GYPV+ ++ LV+GS+H VDSSE AFK A ++A KDA KKA +LEP
Sbjct: 543 GIQEAMANGVLAGYPVVDVRATLVDGSYHEVDSSEMAFKIAGSLAFKDAAKKAQPVLLEP 602
Query: 595 IMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTK 654
+M+VEV +P E++G V+GD+N +RG + + ++I +++PL E+FGY+TDLRS T+
Sbjct: 603 VMRVEVVVPDEYMGDVIGDLNSRRGRVEGMEPRAGAQVIRAHVPLAEMFGYATDLRSRTQ 662
Query: 655 G 655
G
Sbjct: 663 G 663
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Moorella thermoacetica (strain ATCC 39073) (taxid: 264732) |
| >sp|Q21M89|EFG1_SACD2 Elongation factor G 1 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fusA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/670 (47%), Positives = 469/670 (70%), Gaps = 16/670 (2%)
Query: 2 KNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI 61
K ++ +RNIGI AHVDAGKTTTTER+LFY+G SHKIGEVH G DWM+QEQERGITI
Sbjct: 4 KTPIVRYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGAATMDWMEQEQERGITI 63
Query: 62 TSASVSIFWE--VNKF-KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
TSA+ + FW +F ++ INIIDTPGHVDFTIEVERSLRVLDGAV+++C SSG+QPQT
Sbjct: 64 TSAATTCFWSGMQQQFPQHRINIIDTPGHVDFTIEVERSLRVLDGAVVVLCGSSGVQPQT 123
Query: 119 ETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIV 178
ETVW Q+ KY+VP+++FVNKMDR GAN+ + + ++ + +P++ IG E+ +EG++
Sbjct: 124 ETVWRQANKYEVPRLVFVNKMDRAGANFRSVVQQLRDRLGANAVPLHMTIGAEDGFEGVI 183
Query: 179 DIINKKSFFWKENSIIIK----NIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-Y 233
D+I KS W E + + + +D L + E +E + ++ +EKY+
Sbjct: 184 DLIKMKSIHWNEADMGMTFEYGEVPEDLLEECEEMREYAVEAAAEANDDLMEKYLETGEL 243
Query: 234 SINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV--------DFK 285
S ++IK +R L N+I+P++ GS+ KNKG++ +L+++ EYLP+P +V D +
Sbjct: 244 SEDEIKAGLRARTLANEIVPVLGGSAFKNKGVQAVLDAVVEYLPAPTEVKAIEGTLIDGE 303
Query: 286 NNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRIL 345
D + + F +L FKI DPF+G+L+F R+YSG ++ G VYNS K+ +E++ R++
Sbjct: 304 TVDTRVADDDAPFAALAFKIATDPFVGTLTFFRVYSGRLESGTAVYNSVKQKRERVGRMV 363
Query: 346 RMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIF 405
+M +N++++I + GDI +GLK+ +TGDTLC+ S I LE +E P PVIS+++EP
Sbjct: 364 QMHSNNREEIKEVLAGDIAAAIGLKDVTTGDTLCAESNKIVLERMEFPEPVISVAVEPRT 423
Query: 406 KNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKIS 465
DQEK+ L K +EDPS ++ + TG+TI+SGMGELHL+IIVDR+ +E + I
Sbjct: 424 VPDQEKMAVALAKLAQEDPSFRVATDEETGQTIISGMGELHLDIIVDRMRREFGVDANIG 483
Query: 466 KPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIP 525
KPQV+Y+E I + EGK+++QSGG+GQYGHV IR EP N E +F++E++GG++P
Sbjct: 484 KPQVAYRERITRTCEVEGKFVRQSGGRGQYGHVWIRFEPADDNNAEGLVFENEVVGGAVP 543
Query: 526 KEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALK 585
KE+IPA+EKGI Q+ GV+ GYP++ +K + +GSFH VDS+E AFK AA+IA K+
Sbjct: 544 KEYIPAVEKGISEQMRNGVLAGYPLLGLKATIYDGSFHDVDSNEMAFKIAASIATKNLAA 603
Query: 586 KANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGY 645
+ + +LEP+MKVEV P E +G VVGD+N++RG+I + + + K++ + +PL E+FGY
Sbjct: 604 EGGAVLLEPVMKVEVVTPEENMGDVVGDLNRRRGLIQGMEECISGKVVRAEVPLAEMFGY 663
Query: 646 STDLRSNTKG 655
+TDLRS T+G
Sbjct: 664 ATDLRSATQG 673
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) (taxid: 203122) |
| >sp|Q605A9|EFG2_METCA Elongation factor G 2 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=fusA2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/670 (48%), Positives = 464/670 (69%), Gaps = 17/670 (2%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
+RNIGI+AH+DAGKTTTTERILFY+G SHKIGEVH G I DWM+QEQERGITITSA+ +
Sbjct: 10 YRNIGIMAHIDAGKTTTTERILFYTGVSHKIGEVHDGAAIMDWMEQEQERGITITSAATT 69
Query: 68 IFWEV--NKF-KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
FW F +Y INIIDTPGHVDFTIEVERSLRVLDGA I CA G++PQ+ETVW Q
Sbjct: 70 CFWRGMDGSFPEYRINIIDTPGHVDFTIEVERSLRVLDGACAIFCAVGGVEPQSETVWRQ 129
Query: 125 SQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKK 184
+ KY VP++ FVNKMDR GA++ + I+ + +P+ IG E+ ++G+VD++ K
Sbjct: 130 ADKYGVPRLAFVNKMDRAGADFLRVVDQIRSRLGGSPVPVQLPIGAEDEFKGVVDLLRMK 189
Query: 185 SFFWKENSIIIK----NIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDIK 239
+ +W +++ ++ ++ + ++A + E M+E + E +EKY+ ++ +IK
Sbjct: 190 AIWWDDSTQGMRFSLGDVPAEMVAACVAWREKMVEAAAEASEDLMEKYLEGGELTVEEIK 249
Query: 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNK-- 297
+R L N+I+P++CGS+ KNKG++ +L+++ +YLPSP D L S++
Sbjct: 250 RGLRVRTLANEIVPVLCGSAFKNKGVQAMLDAVVDYLPSPVDTPPVVGIGEGGLESSRKS 309
Query: 298 -----FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSK 352
F +L FKI DP++G L+FIR+YSG + GD VYN K +E+I R+++M AN++
Sbjct: 310 CDNASFSALAFKIATDPYVGVLTFIRVYSGVLSSGDTVYNPVKDRRERIGRLVQMHANNR 369
Query: 353 KDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKL 412
+++ + GDI +GLK+ +TGDTLC + I LE +E P PVIS+++EP K DQEK+
Sbjct: 370 EEVKEVRAGDIAAAIGLKDVTTGDTLCDPKDVITLERMEFPEPVISVAVEPKTKADQEKM 429
Query: 413 LNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYK 472
L K +EDPS + + +G+TI+SGMGELHLEIIVDR+ +E + + PQV+Y+
Sbjct: 430 GIALNKLAQEDPSFRVRTDEESGQTIISGMGELHLEIIVDRMKREFGVDANVGAPQVAYR 489
Query: 473 ESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAI 532
E+I+K V QEGKY++Q+GG+GQYGHV +RIEP L+ + F + I+GG +PKE+IPA+
Sbjct: 490 ETIRKAVEQEGKYVRQTGGRGQYGHVWLRIEP--LDPGGGYEFVNGIVGGVVPKEYIPAV 547
Query: 533 EKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYIL 592
+KGI Q+ GV+ G+PV+ ++V L +GS+H VDSSE AFK A ++A K+ +KA+ +L
Sbjct: 548 DKGIQEQLQNGVLAGFPVVDVRVTLFDGSYHDVDSSEMAFKIAGSMAFKEGARKASPVLL 607
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSN 652
EPIMKVEV P E++G VVGDIN++RGI+ + + K+I +PL E+FGY+TDLRS
Sbjct: 608 EPIMKVEVVTPEEYMGDVVGDINRRRGIVQGMDEVPAGKVIRCEVPLSEMFGYATDLRSA 667
Query: 653 TKGTIGHVDH 662
T+G + H
Sbjct: 668 TQGRATYSMH 677
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1021 | ||||||
| 400404433 | 680 | elongation factor G [Candidatus Carsonel | 0.638 | 0.958 | 0.768 | 0.0 | |
| 400404659 | 679 | elongation factor G [Candidatus Carsonel | 0.643 | 0.967 | 0.746 | 0.0 | |
| 400404881 | 680 | elongation factor G [Candidatus Carsonel | 0.638 | 0.958 | 0.702 | 0.0 | |
| 116335060 | 681 | elongation factor G [Candidatus Carsonel | 0.637 | 0.955 | 0.686 | 0.0 | |
| 400404191 | 679 | elongation factor G [Candidatus Carsonel | 0.635 | 0.955 | 0.677 | 0.0 | |
| 400403953 | 679 | elongation factor G [Candidatus Carsonel | 0.636 | 0.957 | 0.679 | 0.0 | |
| 307543822 | 706 | translation elongation factor G [Halomon | 0.640 | 0.926 | 0.505 | 0.0 | |
| 448747892 | 707 | Translation elongation factor EFG/EF2 [H | 0.634 | 0.916 | 0.496 | 0.0 | |
| 407453086 | 711 | Elongation factor G [Candidatus Portiera | 0.644 | 0.925 | 0.522 | 0.0 | |
| 402575070 | 711 | translation elongation factor 2 (EF-2/EF | 0.644 | 0.925 | 0.522 | 0.0 |
| >gi|400404433|ref|YP_006587453.1| elongation factor G [Candidatus Carsonella ruddii HC isolate Thao2000] gi|400362954|gb|AFP84025.1| elongation factor G [Candidatus Carsonella ruddii HC isolate Thao2000] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/656 (76%), Positives = 582/656 (88%), Gaps = 4/656 (0%)
Query: 3 NKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITIT 62
N +LYFRNIGIIAHVDAGKTTTTERILFYSG SHKIGEVHHG T+TDWM QEQERGITIT
Sbjct: 2 NNLLYFRNIGIIAHVDAGKTTTTERILFYSGISHKIGEVHHGNTVTDWMPQEQERGITIT 61
Query: 63 SASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW 122
SASV+I+W +N Y INIIDTPGHVDFTIEVERSLRVLDGA+I+ICASSGIQPQTETVW
Sbjct: 62 SASVTIYWNLNNINYNINIIDTPGHVDFTIEVERSLRVLDGAIIVICASSGIQPQTETVW 121
Query: 123 FQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIIN 182
QSQK+K+PK+IFVNKMDR+GANY CII IK KFNC +LPIN NIG EEN+ G +++IN
Sbjct: 122 NQSQKHKIPKIIFVNKMDRVGANYEKCIISIKNKFNCNLLPININIGEEENFSGFINLIN 181
Query: 183 KKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242
K + W N + IKNID++Q S F+ + +LETLSNND+ FLEKYINNN+++NDI SI
Sbjct: 182 MKFYNWDNNVLCIKNIDENQKSLFNKNRDFLLETLSNNDDTFLEKYINNNFNVNDIIISI 241
Query: 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV---DFKNNDYNINLNSNKFV 299
RKLVL NKIIPIMCG+SLKNKGIEFLL+SIC +LPSPYDV D N+++NI+ N KF+
Sbjct: 242 RKLVLNNKIIPIMCGTSLKNKGIEFLLDSICNFLPSPYDVKIKDCNNDNFNIDKNK-KFL 300
Query: 300 SLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAH 359
SL+FKI++DPFLGSLSFIRIYSG IKVG+++YNSTKK+KEKIFRILRMFAN+KKD+ +A
Sbjct: 301 SLLFKIYNDPFLGSLSFIRIYSGTIKVGEIIYNSTKKIKEKIFRILRMFANTKKDLQEAS 360
Query: 360 FGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKF 419
GDIVVIVGLKESSTGDTL S+ EN+QLE I PIPVISISIEPI KN+QEKL+N+L K+
Sbjct: 361 AGDIVVIVGLKESSTGDTLISIGENLQLEKISIPIPVISISIEPIIKNEQEKLINLLHKY 420
Query: 420 CKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIV 479
CKEDPSLLL+INN+TGETILSGMGELHLEIIVDRI KENN+KTKISKP+VSYKESIKK+V
Sbjct: 421 CKEDPSLLLNINNSTGETILSGMGELHLEIIVDRIKKENNLKTKISKPKVSYKESIKKVV 480
Query: 480 TQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQ 539
QEGKYIKQSGGKGQYGHVV++IEPI ENKENFIFKSEIIGGS+PKE+ IEKGI+ Q
Sbjct: 481 IQEGKYIKQSGGKGQYGHVVLKIEPILFENKENFIFKSEIIGGSVPKEYFTPIEKGIIQQ 540
Query: 540 INYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVE 599
+ GV+LGYPVIKIKV L++GSFHSVDSSEYAFKNAA I++K+ LKKANSY+LEPIMKVE
Sbjct: 541 LLQGVILGYPVIKIKVSLIDGSFHSVDSSEYAFKNAAMISIKEGLKKANSYVLEPIMKVE 600
Query: 600 VNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
+N P+E+LGI+V DINKKRGIIN ++D+ NFKIINS +PLRELFGYST+LRSNTKG
Sbjct: 601 INTPNEYLGIIVSDINKKRGIINNVLDYNNFKIINSLVPLRELFGYSTELRSNTKG 656
|
Source: Candidatus Carsonella ruddii HC isolate Thao2000 Species: Candidatus Carsonella ruddii Genus: Candidatus Carsonella Family: Order: Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|400404659|ref|YP_006587634.1| elongation factor G [Candidatus Carsonella ruddii HT isolate Thao2000] gi|400363135|gb|AFP84205.1| elongation factor G [Candidatus Carsonella ruddii HT isolate Thao2000] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/659 (74%), Positives = 573/659 (86%), Gaps = 2/659 (0%)
Query: 3 NKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITIT 62
N +L FRNIGIIAHVDAGKTTTTERILFYSG SHKIGEVHHG TITDWM QEQERGITIT
Sbjct: 2 NNLLNFRNIGIIAHVDAGKTTTTERILFYSGLSHKIGEVHHGNTITDWMPQEQERGITIT 61
Query: 63 SASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW 122
SASV+I+W +N KY INIIDTPGHVDFTIEVERSLRVLDGA+IIICASSGIQPQTETVW
Sbjct: 62 SASVTIYWNLNNIKYTINIIDTPGHVDFTIEVERSLRVLDGAIIIICASSGIQPQTETVW 121
Query: 123 FQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIIN 182
QSQKY +PK+IFVNKMDRIGANY NCI IK KFNC +LPIN NIG EEN+ G ++II
Sbjct: 122 NQSQKYNIPKIIFVNKMDRIGANYENCINSIKNKFNCKLLPININIGEEENFSGFINIIE 181
Query: 183 KKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242
+ + WK + IK I+++Q Y + +LETLSNND+FFLEKYINNN++ NDIKNSI
Sbjct: 182 MEFYEWKNDIFYIKKINQEQEKKIFKYRDYLLETLSNNDDFFLEKYINNNFNNNDIKNSI 241
Query: 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN-NDYNINLNSNK-FVS 300
RKLVL NKIIPIMCG+SLKNKGIEFLLNSIC++LPSP DV KN N+ N ++ NK F++
Sbjct: 242 RKLVLNNKIIPIMCGTSLKNKGIEFLLNSICDFLPSPLDVKIKNLNNNNFGVDKNKKFLA 301
Query: 301 LVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHF 360
L+FK+++DPFLG LSF+RIYSG IKVG+++YNSTKK+KEK+FRILRMFAN+KKD+ +A
Sbjct: 302 LLFKVYNDPFLGMLSFVRIYSGKIKVGEIIYNSTKKIKEKVFRILRMFANTKKDLQEASA 361
Query: 361 GDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFC 420
GDIVVIVG+KES+TGDTL S+ ENIQLE I PIPVISIS+EP KNDQEKL+N+L K+C
Sbjct: 362 GDIVVIVGIKESTTGDTLISIGENIQLEKISIPIPVISISVEPFLKNDQEKLINLLVKYC 421
Query: 421 KEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVT 480
KEDPSLLL+INN+TGETILSGMGELHLEII+DRI KENN+K KIS+P+VSYKESIK +
Sbjct: 422 KEDPSLLLNINNSTGETILSGMGELHLEIIIDRIKKENNLKIKISEPKVSYKESIKNTII 481
Query: 481 QEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQI 540
QEGKYIKQSGGKGQYGHV+I+IEPIS +N ENFIFKSEIIGGS+PKE+ +IEKGI+ Q+
Sbjct: 482 QEGKYIKQSGGKGQYGHVIIKIEPISFKNNENFIFKSEIIGGSVPKEYFSSIEKGILQQL 541
Query: 541 NYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEV 600
GV+LGYPV+KIK L+NGSFHSVDSSEYAFK AA IA K+AL KANSYILEPIMKVE+
Sbjct: 542 LQGVILGYPVVKIKATLLNGSFHSVDSSEYAFKAAAMIATKEALIKANSYILEPIMKVEI 601
Query: 601 NLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGH 659
N P+E+LG++V DINKKRGIIN++ID+ NFKIINS +PLRELFGYST+LRS+TKG +
Sbjct: 602 NCPNEYLGVIVSDINKKRGIINSVIDYNNFKIINSLVPLRELFGYSTELRSSTKGRASY 660
|
Source: Candidatus Carsonella ruddii HT isolate Thao2000 Species: Candidatus Carsonella ruddii Genus: Candidatus Carsonella Family: Order: Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|400404881|ref|YP_006587813.1| elongation factor G [Candidatus Carsonella ruddii PC isolate NHV] gi|400363316|gb|AFP84385.1| elongation factor G [Candidatus Carsonella ruddii PC isolate NHV] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/656 (70%), Positives = 546/656 (83%), Gaps = 4/656 (0%)
Query: 3 NKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITIT 62
N + RNIGIIAHVDAGKTTTTERILF+SG SHKIGEVH G TITDWM+QEQERGITIT
Sbjct: 2 NNIKNIRNIGIIAHVDAGKTTTTERILFFSGFSHKIGEVHTGNTITDWMKQEQERGITIT 61
Query: 63 SASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW 122
SASV+ FW+ N F IN+IDTPGHVDFTIEVERSLRVLDGAVI+ICASSGIQPQTETVW
Sbjct: 62 SASVTFFWKTNFFNSSINLIDTPGHVDFTIEVERSLRVLDGAVILICASSGIQPQTETVW 121
Query: 123 FQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIIN 182
QSQK+ +PK++F+NK+DRIGA Y + I D+K KF C +L I+ NIGIE + GI+D+IN
Sbjct: 122 NQSQKFNIPKILFINKLDRIGAKYLSIIEDVKNKFLCNILIISLNIGIENTFLGIIDLIN 181
Query: 183 KKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242
K W + + IKNI + L+ + Y ++LETLS D+FFLEKYIN+NY ++DI SI
Sbjct: 182 MKELIWTNSKLEIKNIKNENLNISNKYRNILLETLSEYDDFFLEKYINSNYIVSDIICSI 241
Query: 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN-NDYNINLNS-NKFVS 300
RKLV+ NKIIP++CGSSLKNKGIEFLL+SI +LPSP DV KN N+ N ++S KF++
Sbjct: 242 RKLVISNKIIPVICGSSLKNKGIEFLLDSIVNFLPSPIDVGIKNVNNINYLVSSEKKFLA 301
Query: 301 LVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHF 360
L+FK+F+DP+LG LSFIRIYSG IK G +++N++K +KEKIFRI+RMFANSKKD+N A
Sbjct: 302 LLFKVFNDPYLGLLSFIRIYSGSIKPGQIIFNNSKNIKEKIFRIIRMFANSKKDLNIASA 361
Query: 361 GDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFC 420
GDIVVI+GLKES TGDTL +E I LE I P+PVISISIEPI KND EKLLN++ K C
Sbjct: 362 GDIVVIIGLKESFTGDTLSYDNEKILLEKINIPLPVISISIEPIIKNDYEKLLNLISKLC 421
Query: 421 KEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVT 480
KEDPSLL IN+NTGE ILSGMGELHLEII DRI KE NIKTK SKPQVSYKESIKK V
Sbjct: 422 KEDPSLLFKINDNTGELILSGMGELHLEIITDRINKEFNIKTKTSKPQVSYKESIKKKVI 481
Query: 481 QEGKYIKQSGGKGQYGHVVIRIEPISLENKEN-FIFKSEIIGGSIPKEFIPAIEKGIMNQ 539
QEGKYIKQ+GG+GQYGHVV++IEPI ++N EN FIFK EIIGG+IPKE+ +IEKGI+ Q
Sbjct: 482 QEGKYIKQTGGRGQYGHVVLKIEPI-IDNIENDFIFKIEIIGGAIPKEYFLSIEKGILEQ 540
Query: 540 INYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVE 599
I GV+LGYPV KIK+ L++GSFH VDSSEYAFKNAA+IALK+ALKKANS++LEPIMKVE
Sbjct: 541 IKSGVILGYPVTKIKITLIDGSFHPVDSSEYAFKNAASIALKEALKKANSFLLEPIMKVE 600
Query: 600 VNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
+ P E+LGI++ DINKKRG I ++ID+ NFKIINS IPLRELFGYST+LRSNTKG
Sbjct: 601 IISPKEYLGIIISDINKKRGNIVSVIDNNNFKIINSLIPLRELFGYSTELRSNTKG 656
|
Source: Candidatus Carsonella ruddii PC isolate NHV Species: Candidatus Carsonella ruddii Genus: Candidatus Carsonella Family: Order: Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|116335060|ref|YP_802555.1| elongation factor G [Candidatus Carsonella ruddii PV] gi|123025704|sp|Q05FI2.1|EFG_CARRP RecName: Full=Elongation factor G; Short=EF-G gi|13272296|gb|AAK17079.1|AF274444_9 elongation factor G [Candidatus Carsonella ruddii] gi|116235341|dbj|BAF35189.1| elongation factor G [Candidatus Carsonella ruddii PV] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/657 (68%), Positives = 541/657 (82%), Gaps = 6/657 (0%)
Query: 3 NKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITIT 62
N + RNIGIIAHVDAGKTTTTERILF+SG SHKIGEVH G TITDWM+QEQERGITIT
Sbjct: 2 NDIKNIRNIGIIAHVDAGKTTTTERILFFSGFSHKIGEVHTGNTITDWMKQEQERGITIT 61
Query: 63 SASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW 122
SASV+ FW+ N + IN+IDTPGHVDFTIEVERSLRVLDGAVI+ICASSGIQPQTETVW
Sbjct: 62 SASVTFFWKTNFYNSSINLIDTPGHVDFTIEVERSLRVLDGAVILICASSGIQPQTETVW 121
Query: 123 FQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIIN 182
QS+K+ +PK++FVNK+DRIGA Y + I +IKKKF C +L IN NIGIE ++ GI+D+IN
Sbjct: 122 NQSEKFNIPKILFVNKLDRIGAKYLSIIENIKKKFFCNILIINLNIGIENSFSGIIDLIN 181
Query: 183 KKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242
K W + + I+NI + Y ++LETLS D+ FLEKYIN+N+SI DI SI
Sbjct: 182 MKELIWNNSQLEIRNITNKNFDISNKYRNILLETLSEYDDIFLEKYINSNFSIKDIIESI 241
Query: 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNN---DYNINLNSNKFV 299
RKLV+ NKIIPI CGSSLKNKGIEFLL+SI +LPSP D+ KN +Y++N+ S KF+
Sbjct: 242 RKLVILNKIIPIACGSSLKNKGIEFLLDSIVNFLPSPIDIGIKNVSNINYSVNIKS-KFL 300
Query: 300 SLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAH 359
+L+FK+F+DP+LG LSFIRIYSG I+ G +++N++K +KEKIFRI+RMFANSKKD+N A
Sbjct: 301 ALLFKVFNDPYLGLLSFIRIYSGKIEPGQIIFNNSKNIKEKIFRIIRMFANSKKDLNIAS 360
Query: 360 FGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKF 419
GDIVV++GLK S TGDTL +E + LE I P+PVIS+S+EPI KND EKLLN++ KF
Sbjct: 361 AGDIVVLIGLKNSFTGDTLSFDNEKVLLEKINIPLPVISVSVEPIVKNDYEKLLNLINKF 420
Query: 420 CKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIV 479
CKEDPSLL IN NTGE ILSGMGELHLEII+DRI E NIKTK SKPQVSYKESIKK +
Sbjct: 421 CKEDPSLLFKINENTGELILSGMGELHLEIIIDRINNEFNIKTKTSKPQVSYKESIKKTI 480
Query: 480 TQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQ 539
QEGKYIKQ+GG+GQYGHVV++IEPI +E K++FIFK E++GG IPKE+ +IEKGI+ Q
Sbjct: 481 IQEGKYIKQTGGRGQYGHVVLKIEPILIE-KDDFIFKIEVVGGVIPKEYFLSIEKGILEQ 539
Query: 540 INYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVE 599
I GVVLGYPV KIK+ L+NGSFH VDSSEYAFKNAA+IALK+ALKKANS++LEPIMKVE
Sbjct: 540 IKCGVVLGYPVTKIKITLINGSFHPVDSSEYAFKNAASIALKEALKKANSFLLEPIMKVE 599
Query: 600 VNLPSEFLGIVVGDINKKRGIINTIID-HENFKIINSYIPLRELFGYSTDLRSNTKG 655
+ P E+LGIV+ DI+KKRG I +++D + N KIINS IPLRELFGYSTDLRSNTKG
Sbjct: 600 IISPKEYLGIVISDISKKRGNIISVVDNNNNLKIINSLIPLRELFGYSTDLRSNTKG 656
|
Source: Candidatus Carsonella ruddii PV Species: Candidatus Carsonella ruddii Genus: Candidatus Carsonella Family: Order: Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|400404191|ref|YP_006587259.1| elongation factor G [Candidatus Carsonella ruddii CS isolate Thao2000] gi|400362759|gb|AFP83831.1| elongation factor G [Candidatus Carsonella ruddii CS isolate Thao2000] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/654 (67%), Positives = 531/654 (81%), Gaps = 5/654 (0%)
Query: 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
+L RNIGIIAHVDAGKTTTTERILFYSG SHKIGEVH G T+TDWM+QEQERGITITSA
Sbjct: 4 ILLIRNIGIIAHVDAGKTTTTERILFYSGYSHKIGEVHDGNTVTDWMKQEQERGITITSA 63
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
SV+IFW+ + INIIDTPGHVDFTIEVERSLRVLDGAVI+ICASSGIQ QTETVW Q
Sbjct: 64 SVTIFWKTKYYNSKINIIDTPGHVDFTIEVERSLRVLDGAVIVICASSGIQSQTETVWNQ 123
Query: 125 SQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKK 184
SQKY +PK+IF+NKMDRIGA Y I DIK KFNCI+L + N+GIE+N++G++D+I
Sbjct: 124 SQKYNIPKIIFINKMDRIGARYFEIIEDIKIKFNCILLILQINVGIEDNFKGVIDLIEFN 183
Query: 185 SFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRK 244
+W++N + KNI +D ++ Y E + E LS NDE F EKY+ N I DI SIRK
Sbjct: 184 FNYWEDNILKKKNIPQDYINLSLKYKEKIFEILSENDEIFFEKYVLNKVCIEDIIISIRK 243
Query: 245 LVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV---DFKNNDYNINLNSNKFVSL 301
LV+KN +IP++CG+SLKNKGIEFLLN I ++ PSP DV +F N +Y I +KF+SL
Sbjct: 244 LVIKNILIPVICGTSLKNKGIEFLLNYIVDFFPSPIDVGIKNFNNKEYKI-CKKSKFLSL 302
Query: 302 VFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFG 361
+FKI +D LG+LS+IRIYSG +KVGD++YNS+KK+KEK+FRILRMFANSKKDIN+A G
Sbjct: 303 LFKILNDNHLGTLSYIRIYSGILKVGDIIYNSSKKIKEKVFRILRMFANSKKDINEAFAG 362
Query: 362 DIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFCK 421
DIVVIVGLKES TGDTLC+++ENI LE I+ P+PVISISIEP FK DQEKLL L+K CK
Sbjct: 363 DIVVIVGLKESFTGDTLCNINENILLEKIKIPLPVISISIEPFFKKDQEKLLFCLKKLCK 422
Query: 422 EDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQ 481
EDPS+ LS NN+ E I+SGMGELHLEI++DRI KE NI+TKISKPQV YKESIK + Q
Sbjct: 423 EDPSINLSTNNHFSEVIISGMGELHLEIVIDRINKEFNIQTKISKPQVFYKESIKNTIIQ 482
Query: 482 EGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQIN 541
EGKYIKQSGG+GQYGHVV+++EPI L + ++ IF EIIGGSIPKEF IEKGI Q+
Sbjct: 483 EGKYIKQSGGRGQYGHVVLKVEPI-LNSNDDIIFLKEIIGGSIPKEFFQPIEKGIYEQLK 541
Query: 542 YGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVN 601
G++LG P+ KIK+ L++GSFHSVDSSEYAFKNAA IALK+ALKKANSY+LEPIMKV+++
Sbjct: 542 TGILLGSPLTKIKITLIDGSFHSVDSSEYAFKNAAMIALKEALKKANSYVLEPIMKVDIS 601
Query: 602 LPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
P +LG +VGDINKKRG I I D +NFK+I +PL ELFGYST+LRS TKG
Sbjct: 602 TPENYLGNIVGDINKKRGNIININDFKNFKVIFCTLPLNELFGYSTELRSITKG 655
|
Source: Candidatus Carsonella ruddii CS isolate Thao2000 Species: Candidatus Carsonella ruddii Genus: Candidatus Carsonella Family: Order: Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|400403953|ref|YP_006587069.1| elongation factor G [Candidatus Carsonella ruddii CE isolate Thao2000] gi|400362568|gb|AFP83641.1| elongation factor G [Candidatus Carsonella ruddii CE isolate Thao2000] | Back alignment and taxonomy information |
|---|
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/655 (67%), Positives = 536/655 (81%), Gaps = 5/655 (0%)
Query: 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITS 63
++L RNIGIIAHVDAGKTTTTERILFYSG SHKIGEVH G T+TDWM+QEQERGITITS
Sbjct: 3 EILLIRNIGIIAHVDAGKTTTTERILFYSGYSHKIGEVHDGNTVTDWMKQEQERGITITS 62
Query: 64 ASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF 123
ASV+IFW+ + INIIDTPGHVDFTIEVERSLRVLDGAVI+ICASSGIQ QTETVW
Sbjct: 63 ASVTIFWKTKYYHSKINIIDTPGHVDFTIEVERSLRVLDGAVIVICASSGIQSQTETVWN 122
Query: 124 QSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINK 183
QSQKY +PK+IF+NKMDRIGA + I D+K KFNCI+L + N+GIE+N++G++D+I
Sbjct: 123 QSQKYNIPKIIFINKMDRIGAKFFEIIEDVKIKFNCILLILQINVGIEDNFKGVIDLIEY 182
Query: 184 KSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIR 243
K +W++N +I K+I KD ++ Y E M E LS DEFF EKY+ N +INDI SIR
Sbjct: 183 KFNYWEDNILIKKDIPKDYINLSLQYKEKMFEILSEYDEFFFEKYVLNKITINDIIISIR 242
Query: 244 KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV---DFKNNDYNINLNSNKFVS 300
KLV+KN +IP++CG+SLKNKGIEFLLN I ++ PSP D+ +F N +Y + +KF+S
Sbjct: 243 KLVIKNILIPVICGTSLKNKGIEFLLNYIVDFFPSPVDIGIKNFFNKEYKV-CKKSKFLS 301
Query: 301 LVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHF 360
L+FKI +D LG LS+IRIYSG IKVGD++YNS+KK+KEK+FRILRMFANSKKDIN+A
Sbjct: 302 LLFKILNDDHLGILSYIRIYSGIIKVGDIIYNSSKKIKEKVFRILRMFANSKKDINEAIA 361
Query: 361 GDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFC 420
GDIVVIVGLKES TGDTLC+++ENI LE I+ P+PVISISIEP +K DQEKL+ L+K C
Sbjct: 362 GDIVVIVGLKESFTGDTLCNINENILLEKIKIPLPVISISIEPFYKKDQEKLILSLKKLC 421
Query: 421 KEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVT 480
KEDPS+ LS NN+ E I+SGMGELHLEI+VDRI KE NI TKISKPQV YKESIKK +
Sbjct: 422 KEDPSINLSTNNHFSEMIISGMGELHLEIVVDRINKEFNIPTKISKPQVFYKESIKKTII 481
Query: 481 QEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQI 540
QEGKYIKQSGG+GQYGHVV++IEPI+ +N ++ IF EIIGGSIPKE+ IEKGI Q+
Sbjct: 482 QEGKYIKQSGGRGQYGHVVLKIEPINNDN-DDIIFIKEIIGGSIPKEYFQPIEKGIYEQL 540
Query: 541 NYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEV 600
G++LG P+ KIK+ L++GSFH+VDSSEYAFKNAA IALK+ALKKANSY+LEPIMKVE+
Sbjct: 541 KTGIILGSPLTKIKITLLDGSFHAVDSSEYAFKNAAIIALKEALKKANSYVLEPIMKVEI 600
Query: 601 NLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
+ P +LG +VGDINKKRG I I D +NFK+I IPL ELFGYST+LRS TKG
Sbjct: 601 STPDNYLGNIVGDINKKRGNIVNINDFKNFKVIFCTIPLNELFGYSTELRSITKG 655
|
Source: Candidatus Carsonella ruddii CE isolate Thao2000 Species: Candidatus Carsonella ruddii Genus: Candidatus Carsonella Family: Order: Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|307543822|ref|YP_003896301.1| translation elongation factor G [Halomonas elongata DSM 2581] gi|307215846|emb|CBV41116.1| translation elongation factor G [Halomonas elongata DSM 2581] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/676 (50%), Positives = 483/676 (71%), Gaps = 22/676 (3%)
Query: 2 KNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI 61
K + +RNIGI+AHVDAGKTTTTERILFY+G SHK+GEVH G DWMQQEQERGITI
Sbjct: 4 KTPLKRYRNIGIVAHVDAGKTTTTERILFYTGLSHKVGEVHDGAATMDWMQQEQERGITI 63
Query: 62 TSASVSIFWEV--NKF-KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
TSA+ + FW+ +F ++ INIIDTPGHVDFTIEVERSLRVLDGAV+++C SSG+QPQT
Sbjct: 64 TSAATTCFWQGMDKQFDEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVLCGSSGVQPQT 123
Query: 119 ETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIV 178
ETVW Q+ KY+VP+M+FVNKMDR GA+Y I +K K V+PI N G E+N++G++
Sbjct: 124 ETVWRQANKYEVPRMVFVNKMDRAGADYFMVIDQLKSKLGANVVPIQINWGAEDNFKGVI 183
Query: 179 DIINKKSFFWKENSIIIK----NIDKDQLSAFDYYNELMLETLSNNDEFFLEKYIN-NNY 233
D+I K+ W E++ + +I D Y E M+E+ + E ++KY+ +
Sbjct: 184 DLIRMKAIQWDEDNFGMNYELVDIPADLEETAQKYREQMVESAAEASEELMDKYLEEGDL 243
Query: 234 SINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV-----DFKNND 288
S DIK +R+ L N+I+ + CGS+ KNKG++ +L+ + EY+PSP +V + + D
Sbjct: 244 SEEDIKAGLRRRTLDNEIVLVTCGSAFKNKGVQAVLDGVIEYMPSPTEVKAIEGELDDKD 303
Query: 289 YNINL----NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRI 344
+ ++ F +L FKI DPF+G+L+FIR+YSG +K GD VYNS K+ KE++ RI
Sbjct: 304 GTVATREADDNAPFAALAFKIATDPFVGTLTFIRVYSGVLKSGDSVYNSVKEKKERVGRI 363
Query: 345 LRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPI 404
++M +NS+++I + GDI +GLK+ +TGDTLC L++ I LE +E P PVIS+++EP
Sbjct: 364 VQMHSNSREEIKEVLAGDIAACIGLKDVTTGDTLCDLNDKIVLERMEFPDPVISVAVEPK 423
Query: 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464
K DQEK+ L K +EDPS + + TG+TI+SGMGELHL+IIVDR+ +E + I
Sbjct: 424 SKPDQEKMGTALGKLAQEDPSFQVKTDEETGQTIISGMGELHLDIIVDRLRREFKVDANI 483
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKEN-----FIFKSEI 519
KPQV+Y+E+I+K V QEGK+++QSGG+GQYGHV +RIEP++ E+K + F F SEI
Sbjct: 484 GKPQVAYRETIRKSVEQEGKFVRQSGGRGQYGHVHLRIEPLTAEDKGDDEDMHFKFASEI 543
Query: 520 IGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIA 579
+GG +PKE++PA+EKG Q+ GV+ GYP+I +KV L +GS+H VDS+E AFK A+++A
Sbjct: 544 VGGVVPKEYVPAVEKGAYEQLQNGVIAGYPMIDVKVTLFDGSYHDVDSNETAFKVASSMA 603
Query: 580 LKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPL 639
+K+ KA + +LEP+MKVEV P EF+G V+GD+N++RG++ + D K+I + +PL
Sbjct: 604 IKEGAPKAKAVLLEPVMKVEVVTPEEFMGDVMGDLNRRRGLVQGMDDTPAGKVIRATVPL 663
Query: 640 RELFGYSTDLRSNTKG 655
E+FGY+TDLRS ++G
Sbjct: 664 AEMFGYATDLRSQSQG 679
|
Source: Halomonas elongata DSM 2581 Species: Halomonas elongata Genus: Halomonas Family: Halomonadaceae Order: Oceanospirillales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|448747892|ref|ZP_21729544.1| Translation elongation factor EFG/EF2 [Halomonas titanicae BH1] gi|445564540|gb|ELY20659.1| Translation elongation factor EFG/EF2 [Halomonas titanicae BH1] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/671 (49%), Positives = 480/671 (71%), Gaps = 23/671 (3%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
+RNIGI+AHVDAGKTTTTER+LFY+G SHK+GEVH G DWM+QEQERGITITSA+ +
Sbjct: 10 YRNIGIVAHVDAGKTTTTERVLFYTGLSHKVGEVHDGAATMDWMEQEQERGITITSAATT 69
Query: 68 IFWE-VNKF--KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
FW+ +NK ++ INIIDTPGHVDFTIEVERSLRVLDGAV+++C SSG+QPQTETVW Q
Sbjct: 70 CFWQGMNKQFPEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVLCGSSGVQPQTETVWRQ 129
Query: 125 SQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKK 184
+ KY+VP+M+FVNKMDR GA++ + +K++ +PI N G EE+++G++D+I K
Sbjct: 130 ANKYEVPRMVFVNKMDRTGADFFMVVEQLKERLGAKAVPIQINWGTEEDFKGVIDLIQMK 189
Query: 185 SFFWKENSI----IIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDIK 239
+ W E S+ + +I + + Y E M+E + + +EKY+ S+ +IK
Sbjct: 190 AILWDEESLGMNYDLADIPAELQETAEKYREEMVEAAAEGSDELMEKYLEGGELSVEEIK 249
Query: 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV-----DFKNNDYNINL- 293
+R L N I+ + CGS+ KNKG++ +L+ + EY+PSP +V + + D ++
Sbjct: 250 AGLRARTLANDIVLVTCGSAFKNKGVQAVLDGVIEYMPSPTEVKAIEGELDDKDGTVDTR 309
Query: 294 ---NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFAN 350
+S F +L FKI DPF+G+L+FIR+YSG +K GD VYNS K+ KE++ RI++M AN
Sbjct: 310 EADDSAPFAALAFKIATDPFVGTLTFIRVYSGVLKSGDGVYNSVKQKKERVGRIVQMHAN 369
Query: 351 SKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQE 410
S+++I + GDI +GLK+ +TGDTLC + I LE +E P PVIS+++EP K DQE
Sbjct: 370 SREEIKEVLAGDIAACIGLKDVTTGDTLCDIDNKIVLERMEFPDPVISVAVEPKSKADQE 429
Query: 411 KLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVS 470
K+ L K +EDPS + + TG+TI+SGMGELHL+I+VDR+ +E ++ I KPQV+
Sbjct: 430 KMGVALGKLAQEDPSFQVKTDEETGQTIISGMGELHLDILVDRMRREFKVEANIGKPQVA 489
Query: 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKEN------FIFKSEIIGGSI 524
Y+E+I+ + QEGK+++QSGG+GQYGHV +RIEP++ E K F F SEI+GG++
Sbjct: 490 YRETIRGSIEQEGKFVRQSGGRGQYGHVWLRIEPLTAEEKGEGEDELFFKFNSEIVGGAV 549
Query: 525 PKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDAL 584
PKE++PA+EKG Q+ GV+ GYP+I +KV L +GSFH VDS+E AFK A+++A+K+
Sbjct: 550 PKEYVPAVEKGAFEQLKNGVIAGYPMIDVKVTLFDGSFHDVDSNETAFKIASSMAVKEGA 609
Query: 585 KKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFG 644
+KA + +LEP+MKVE+ P EF+G V+GD++++RG++ + D + K+I + +PL E+FG
Sbjct: 610 RKAKAVLLEPVMKVEIVTPEEFMGDVMGDLSRRRGLVQGMDDSSSGKVIRATVPLGEMFG 669
Query: 645 YSTDLRSNTKG 655
Y+TDLRS T+G
Sbjct: 670 YATDLRSQTQG 680
|
Source: Halomonas titanicae BH1 Species: Halomonas titanicae Genus: Halomonas Family: Halomonadaceae Order: Oceanospirillales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|407453086|ref|YP_006732405.1| Elongation factor G [Candidatus Portiera aleyrodidarum BT-QVLC] gi|405779803|gb|AFS18806.1| Elongation factor G [Candidatus Portiera aleyrodidarum BT-QVLC] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/683 (52%), Positives = 487/683 (71%), Gaps = 25/683 (3%)
Query: 2 KNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI 61
K + +RNIGIIAHVDAGKTTTTERILFY+G SHK+GEVH GT TDWM+QEQERGITI
Sbjct: 4 KTSINRYRNIGIIAHVDAGKTTTTERILFYTGRSHKLGEVHDGTAATDWMEQEQERGITI 63
Query: 62 TSASVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
TSA+V+ FW K +Y IN+IDTPGHVDFTIEVERSLRVLDGA++++C SSG+Q QT
Sbjct: 64 TSAAVTTFWNGMKGQYKEHRINLIDTPGHVDFTIEVERSLRVLDGAIVVLCGSSGVQAQT 123
Query: 119 ETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIV 178
ETVW Q+ KYKVP+++FVNKMDR GA + + + ++++ NC +P+ N G+EE ++GI+
Sbjct: 124 ETVWRQANKYKVPRIVFVNKMDRPGAEFLSVVKQLEERLNCKAVPVQLNWGVEETFKGII 183
Query: 179 DIINKKSFFWKENS----IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYS 234
D+I K+ +W EN+ I NI K+ YNEL+ + + ++E LEKY
Sbjct: 184 DLIEMKAIYWCENTNGSEYKIVNIPKELKVLSKQYNELIKDIAAESEESILEKYFEEGSL 243
Query: 235 IND-IKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL 293
D IK +R LKN+I+ + CGS+ KNKGI+ LL+++ +YLPSP D+D +I +
Sbjct: 244 SKDLIKKGLRIRSLKNEIVLVTCGSAFKNKGIQPLLDAVIDYLPSPLDIDLLKGKKSIFI 303
Query: 294 NSN------------KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKI 341
N F +L FKI D ++G+L+F+R+YSG IK GD VYNS K E+I
Sbjct: 304 NKKADIKKYMADDNASFAALAFKIATDSYVGNLTFVRVYSGKIKSGDKVYNSIKNKTERI 363
Query: 342 FRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISI 401
RI+++ AN+++DI + GDI VGLK ++TGDTLCS+ NI LE IE P PV++++I
Sbjct: 364 GRIVQLHANAREDIKEILAGDIAACVGLKVTTTGDTLCSVKNNIILERIEFPEPVLAVAI 423
Query: 402 EPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIK 461
EP K+DQEK+++ L K KEDPS ++ + G+TI+ GMGELH+EIIVDR+ +E ++
Sbjct: 424 EPKHKDDQEKMISALNKLEKEDPSFKVNYDKEIGQTIIYGMGELHIEIIVDRMRREFKVE 483
Query: 462 TKISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKE-----NFIFK 516
I KPQV+Y+E+I IV QEGK+I+QSGG+GQYGHV +RIEP +K N F
Sbjct: 484 ANIGKPQVAYRETINNIVKQEGKFIRQSGGRGQYGHVWLRIEPFKKVDKSNDKEINNKFC 543
Query: 517 SEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAA 576
SEI+GG+IPKEFIPAIEKG +Q+ GV+ GYP+I +KV + +GS+H VDS+E AFK A+
Sbjct: 544 SEIVGGTIPKEFIPAIEKGAYDQLKNGVLAGYPLINVKVTVFDGSYHEVDSNENAFKVAS 603
Query: 577 AIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSY 636
+IA+KD KA+ +LEPIMKVE+ P F+G VVGD+N++RGII ++ D+ N K+I +
Sbjct: 604 SIAVKDGAIKADVVLLEPIMKVEITTPELFMGDVVGDLNRRRGIIQSMEDNFNGKVITAM 663
Query: 637 IPLRELFGYSTDLRSNTKGTIGH 659
+PL+E+FGY+T LRSNT+G +
Sbjct: 664 VPLKEMFGYATVLRSNTQGRASY 686
|
Source: Candidatus Portiera aleyrodidarum BT-QVLC Species: Candidatus Portiera aleyrodidarum Genus: Candidatus Portiera Family: Halomonadaceae Order: Oceanospirillales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|402575070|ref|YP_006607962.1| translation elongation factor 2 (EF-2/EF-G) [Candidatus Portiera aleyrodidarum BT-B-HRs] gi|407681420|ref|YP_006796596.1| translation elongation factor G [Candidatus Portiera aleyrodidarum BT-QVLC] gi|407681702|ref|YP_006796877.1| Translation elongation factor G [Candidatus Portiera aleyrodidarum BT-B-HRs] gi|401871874|gb|AFQ24042.1| translation elongation factor 2 (EF-2/EF-G) [Candidatus Portiera aleyrodidarum BT-B-HRs] gi|407243031|gb|AFT80432.1| Translation elongation factor G [Candidatus Portiera aleyrodidarum BT-QVLC] gi|407243313|gb|AFT80713.1| Translation elongation factor G [Candidatus Portiera aleyrodidarum BT-B-HRs] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/683 (52%), Positives = 487/683 (71%), Gaps = 25/683 (3%)
Query: 2 KNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI 61
K + +RNIGIIAHVDAGKTTTTERILFY+G SHK+GEVH GT TDWM+QEQERGITI
Sbjct: 4 KTSINRYRNIGIIAHVDAGKTTTTERILFYTGRSHKLGEVHDGTAATDWMEQEQERGITI 63
Query: 62 TSASVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
TSA+V+ FW K +Y IN+IDTPGHVDFTIEVERSLRVLDGA++++C SSG+Q QT
Sbjct: 64 TSAAVTTFWNGMKGQYKEHRINLIDTPGHVDFTIEVERSLRVLDGAIVVLCGSSGVQAQT 123
Query: 119 ETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIV 178
ETVW Q+ KYKVP+++FVNKMDR GA + + + ++++ NC +P+ N G+EE ++GI+
Sbjct: 124 ETVWRQANKYKVPRIVFVNKMDRPGAEFLSVVKQLEERLNCKAVPVQLNWGVEETFKGII 183
Query: 179 DIINKKSFFWKENS----IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYS 234
D+I K+ +W EN+ I NI K+ YNEL+ + + ++E LEKY
Sbjct: 184 DLIEMKAIYWCENTNGSEYKIVNIPKELKVLSKQYNELIKDIAAESEESILEKYFEEGSL 243
Query: 235 IND-IKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL 293
D IK +R LKN+I+ + CGS+ KNKGI+ LL+++ +YLPSP D+D +I +
Sbjct: 244 SKDLIKKGLRIRSLKNEIVLVTCGSAFKNKGIQPLLDAVIDYLPSPLDIDLLKGKKSIFI 303
Query: 294 NSN------------KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKI 341
N F +L FKI D ++G+L+F+R+YSG IK GD VYNS K E+I
Sbjct: 304 NKKADIKKYMADDNASFAALAFKIATDSYVGNLTFVRVYSGKIKSGDKVYNSIKNKTERI 363
Query: 342 FRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISI 401
RI+++ AN+++DI + GDI VGLK ++TGDTLCS+ NI LE IE P PV++++I
Sbjct: 364 GRIVQLHANAREDIKEILAGDIAACVGLKVTTTGDTLCSVKNNIILERIEFPEPVLAVAI 423
Query: 402 EPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIK 461
EP K+DQEK+++ L K KEDPS ++ + G+TI+ GMGELH+EIIVDR+ +E ++
Sbjct: 424 EPKHKDDQEKMISALNKLEKEDPSFKVNYDKEIGQTIIYGMGELHIEIIVDRMRREFKVE 483
Query: 462 TKISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKE-----NFIFK 516
I KPQV+Y+E+I IV QEGK+I+QSGG+GQYGHV +RIEP +K N F
Sbjct: 484 ANIGKPQVAYRETINNIVKQEGKFIRQSGGRGQYGHVWLRIEPFKKVDKSNDKEINNKFC 543
Query: 517 SEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAA 576
SEI+GG+IPKEFIPAIEKG +Q+ GV+ GYP+I +KV + +GS+H VDS+E AFK A+
Sbjct: 544 SEIVGGTIPKEFIPAIEKGAYDQLKNGVLAGYPLINVKVTVFDGSYHEVDSNENAFKVAS 603
Query: 577 AIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSY 636
+IA+KD KA+ +LEPIMKVE+ P F+G VVGD+N++RGII ++ D+ N K+I +
Sbjct: 604 SIAVKDGAIKADVVLLEPIMKVEITTPELFMGDVVGDLNRRRGIIQSMEDNFNGKVITAM 663
Query: 637 IPLRELFGYSTDLRSNTKGTIGH 659
+PL+E+FGY+T LRSNT+G +
Sbjct: 664 VPLKEMFGYATVLRSNTQGRASY 686
|
Source: Candidatus Portiera aleyrodidarum BT-B-HRs Species: Candidatus Portiera aleyrodidarum Genus: Candidatus Portiera Family: Halomonadaceae Order: Oceanospirillales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1021 | ||||||
| TIGR_CMR|CHY_2313 | 692 | CHY_2313 "translation elongati | 0.627 | 0.926 | 0.462 | 4e-161 | |
| TIGR_CMR|CJE_0542 | 691 | CJE_0542 "translation elongati | 0.627 | 0.927 | 0.459 | 5.1e-161 | |
| TIGR_CMR|CBU_0235 | 699 | CBU_0235 "translation elongati | 0.631 | 0.922 | 0.459 | 8.4e-161 | |
| UNIPROTKB|Q9KUZ7 | 698 | fusA1 "Elongation factor G 1" | 0.638 | 0.934 | 0.471 | 2.2e-160 | |
| TIGR_CMR|VC_0361 | 698 | VC_0361 "elongation factor G" | 0.638 | 0.934 | 0.471 | 2.2e-160 | |
| TIGR_CMR|GSU_2860 | 692 | GSU_2860 "translation elongati | 0.652 | 0.962 | 0.446 | 5.3e-159 | |
| TIGR_CMR|SO_0228 | 698 | SO_0228 "translation elongatio | 0.632 | 0.925 | 0.450 | 4.8e-158 | |
| TIGR_CMR|CPS_4765 | 699 | CPS_4765 "translation elongati | 0.632 | 0.924 | 0.463 | 4.3e-157 | |
| TIGR_CMR|ECH_0961 | 690 | ECH_0961 "translation elongati | 0.632 | 0.936 | 0.451 | 3.8e-149 | |
| UNIPROTKB|P0A556 | 701 | fusA "Elongation factor G" [My | 0.629 | 0.917 | 0.413 | 5.5e-148 |
| TIGR_CMR|CHY_2313 CHY_2313 "translation elongation factor G" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1569 (557.4 bits), Expect = 4.0e-161, P = 4.0e-161
Identities = 305/659 (46%), Positives = 431/659 (65%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGI+AH+DAGKTTTTERILFY+G HK+GEVH G DWM QEQERGITITSA+ +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILFYTGKVHKMGEVHDGAATMDWMVQEQERGITITSAATTC 70
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
FW+ + INIIDTPGHVDFT+EVERSLRVLDGAV I CA G++PQ+ETVW Q+ KY
Sbjct: 71 FWK----NHRINIIDTPGHVDFTVEVERSLRVLDGAVAIFCAVGGVEPQSETVWRQADKY 126
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
VP++ +VNKMDR+GAN+ + IK++ +PI IG E+ ++G++D+I K+ +
Sbjct: 127 GVPRIAYVNKMDRMGANFFEVVRQIKERLGANPVPIQLPIGNEDTFQGVIDLIENKAIIY 186
Query: 189 KEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDIKNSIRK 244
++ + I + L Y E ++E + DE + KY++ + +I+ +RK
Sbjct: 187 TDDLGTQLAEAEIPAEMLDLVAEYREKVMEAAAEADEELMLKYLDGEELTPEEIRAGLRK 246
Query: 245 LVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV--------DFKNNDYNINLNSN 296
+ K++P++CGSS KNKG++ LL++I YLPSP D+ + + D+ +S
Sbjct: 247 ATIAVKVVPVLCGSSFKNKGVQPLLDAIVYYLPSPVDIPAVRGINPETGDEDFRKASDSE 306
Query: 297 KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIN 356
F +L FKI DP++G L+F R+YSG +K G V NSTK KE+I R+LRM AN +++I+
Sbjct: 307 PFAALAFKIMADPYVGKLTFFRVYSGVLKAGSYVLNSTKGKKERIGRLLRMHANHREEID 366
Query: 357 DAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQEKLLNIL 416
+ GDI VGLK++ TGDT+C I LE+ K DQEK+ L
Sbjct: 367 EVCSGDIAAAVGLKDTHTGDTICDEKHPIVLESMEFPEPVINVAIEPKTKQDQEKMSIAL 426
Query: 417 QKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIK 476
Q+ +EDP+ + + TG+TI++GMGELHLEIIVDR+++E ++ + KPQV+YKE+++
Sbjct: 427 QRLAEEDPTFKMWTDQETGQTIIAGMGELHLEIIVDRLMREFKVEANVGKPQVAYKETVR 486
Query: 477 KIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGI 536
EGKYI+Q+GG+GQYGHV I IEP LE + + F ++I+GG IPKE+IPA++ G+
Sbjct: 487 GTAKAEGKYIRQTGGRGQYGHVWIEIEP--LEPGKGYEFVNKIVGGVIPKEYIPAVDAGV 544
Query: 537 MNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYILEPIM 596
+ GV+ GYPVI ++V L +GSFH VDSSE +LEPIM
Sbjct: 545 REALESGVLAGYPVIDVRVTLFDGSFHEVDSSEMAFKIAGSMAAKQAVLKANPVLLEPIM 604
Query: 597 KVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
KVEV +P E++G V+GD+N +RG I + N +++ Y+PL E+FGY+TDLRS T+G
Sbjct: 605 KVEVVVPEEYMGEVIGDLNSRRGRIEGMEARNNMQVVRGYVPLAEMFGYATDLRSKTQG 663
|
|
| TIGR_CMR|CJE_0542 CJE_0542 "translation elongation factor G" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 1568 (557.0 bits), Expect = 5.1e-161, P = 5.1e-161
Identities = 303/659 (45%), Positives = 438/659 (66%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGI AH+DAGKTTT+ERILF++G SHKIGEVH G DWM+QE+ERGITITSA+ +
Sbjct: 11 RNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVHDGAATMDWMEQEKERGITITSAATTC 70
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
FW+ + IN+IDTPGHVDFTIEVERS+RVLDGAV + C+ G+QPQ+ETVW Q+ KY
Sbjct: 71 FWK----DHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQANKY 126
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
VP+++FVNKMDRIGAN+ N I+ + +P+ IG E+N++G++D++ K+ W
Sbjct: 127 GVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPVPLQIPIGAEDNFKGVIDLVTMKALVW 186
Query: 189 KENS----IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDIKNSIR 243
++++ + K I + + Y M+E +S + +EKY+ S+ +IK I+
Sbjct: 187 EDDTKPTDYVEKEIPAELKEKAEEYRTKMIEAVSETSDELMEKYLGGEELSLEEIKTGIK 246
Query: 244 KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYN----INLNSN--- 296
L I+P++CG++ KNKG++ LL+++ YLP+P +V +Y +++ S
Sbjct: 247 AGCLSLSIVPMLCGTAFKNKGVQPLLDAVVAYLPAPDEVANIKGEYEDGTEVSVKSTDDG 306
Query: 297 KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIN 356
+F L FKI DPF+G L+F+R+Y G ++ G YNSTK KE+I R+L+M +N +++I
Sbjct: 307 EFAGLAFKIMTDPFVGQLTFVRVYRGCLESGSYAYNSTKDKKERIGRLLKMHSNKREEIK 366
Query: 357 DAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQEKLLNIL 416
+ G+I +VGLK++ TGDTL S + + LE K DQEK+ L
Sbjct: 367 VLYAGEIGAVVGLKDTLTGDTLASEKDKVILERMDFPDPVISVAVEPKTKADQEKMSIAL 426
Query: 417 QKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIK 476
K +EDPS +S + +G+TI+SGMGELHLEIIVDR+L+E ++ ++ +PQV+Y+E+I+
Sbjct: 427 NKLAQEDPSFRVSTDEESGQTIISGMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIR 486
Query: 477 KIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGI 536
K V QE KY KQSGG+GQYGHV +R+EP LE + F ++I GG IPKE+IPA++KG+
Sbjct: 487 KTVEQEYKYAKQSGGRGQYGHVFLRLEP--LEPGSGYEFVNDIKGGVIPKEYIPAVDKGV 544
Query: 537 MNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYILEPIM 596
+ GV+ GYPV +KV + +GS+H VDSSE + ILEP+M
Sbjct: 545 QEALQNGVLAGYPVEDVKVTVYDGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMM 604
Query: 597 KVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
KVEV P +++G V+GD+NK+RG +N++ + KII ++ PL E+FGYSTDLRS T+G
Sbjct: 605 KVEVETPEDYMGDVIGDLNKRRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQG 663
|
|
| TIGR_CMR|CBU_0235 CBU_0235 "translation elongation factor G" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1566 (556.3 bits), Expect = 8.4e-161, P = 8.4e-161
Identities = 304/662 (45%), Positives = 440/662 (66%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGI+AH+DAGKTTTTER+L+Y+G SHK+GEVH G+ + DWM+QEQERGITITSA+ +
Sbjct: 13 RNIGIMAHIDAGKTTTTERVLYYTGVSHKMGEVHEGSAVMDWMEQEQERGITITSAATTC 72
Query: 69 FW---EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQS 125
+W + K+ INIIDTPGHVDFTIEVERSLRVLDGAV + C+ G++PQ+ETVW Q+
Sbjct: 73 YWLGMDQQYPKHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFCSVGGVEPQSETVWRQA 132
Query: 126 QKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKS 185
+Y VP++ FVNKMDR GAN+ + +K + N +PI IG EE+++G++D+I +K+
Sbjct: 133 NRYHVPRLGFVNKMDRAGANFLRVVNQVKDRLNANPIPIQLPIGAEEDFKGVIDLIREKA 192
Query: 186 FFWKE----NSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYIN-NNYSINDIKN 240
+W E + + +I +D + + E M+E + + E ++KY+ + S I+
Sbjct: 193 IYWNEADRGRTYELADIPEDMKAEVQKWREKMIEAAAESSEELMDKYLEAGDLSPEQIRQ 252
Query: 241 SIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDF---KNNDYNINLNS-- 295
+R+ L N+I+PI+CGS+ KNKG++ LL+++ +YLPSP DV + +D + S
Sbjct: 253 GLRQRTLANEIVPILCGSAFKNKGVQALLDAVIDYLPSPTDVPAIRGEEDDGSEGSRSAS 312
Query: 296 --NKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKK 353
F +L FKI DPF+G+L+F R+YSG +K GD VYN K KE+I R+L+M +NS++
Sbjct: 313 DDEPFAALAFKIASDPFVGTLTFFRVYSGILKSGDSVYNPIKGKKERIGRLLQMHSNSRE 372
Query: 354 DINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQEKLL 413
+I + GDI VGLK +TGDT+C+ I LE K DQEK+
Sbjct: 373 EIKEVRAGDIAAAVGLKTVTTGDTICNQQNIITLEKMDFPEPVISVAIEPKTKADQEKMG 432
Query: 414 NILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKE 473
L K +EDPS + + + +TI+ GMGELHLEIIVDR+ +E N++ + KP+V+Y+E
Sbjct: 433 VALGKLAQEDPSFRVHTDEESAQTIIEGMGELHLEIIVDRMRREFNVEANVGKPRVAYRE 492
Query: 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIE 533
+I++ V Q+GKYI+Q+GG+GQYG V +RIEP E F F++ I+GG +P+E+IPA+E
Sbjct: 493 TIRRSVEQQGKYIRQTGGRGQYGDVWLRIEP--REPGAGFEFENAIVGGVVPREYIPAVE 550
Query: 534 KGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYILE 593
KG+ Q+ G+ GYPV+ +KV + GS+H VDSSE +LE
Sbjct: 551 KGVREQMENGIRAGYPVVDVKVTIFEGSYHDVDSSEMAFKIAGSMAFKEGASKADPVLLE 610
Query: 594 PIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNT 653
PIMKVEV P E++G VVGD+N++RG+I + + KI++ +PL E+FGY+TDLRS +
Sbjct: 611 PIMKVEVVTPEEYMGDVVGDLNRRRGMIQGMDESPAGKIVDVEVPLAEMFGYATDLRSLS 670
Query: 654 KG 655
+G
Sbjct: 671 QG 672
|
|
| UNIPROTKB|Q9KUZ7 fusA1 "Elongation factor G 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1562 (554.9 bits), Expect = 2.2e-160, P = 2.2e-160
Identities = 316/670 (47%), Positives = 432/670 (64%)
Query: 2 KNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI 61
K + +RNIGI AHVDAGKTTTTERILFY+G SHKIGEVH G DWM QEQERGITI
Sbjct: 4 KTPIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATMDWMVQEQERGITI 63
Query: 62 TSASVSIFW---EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
TSA+ + FW E ++ INIIDTPGHVDFTIEVERSLRVLDGAV++ C +SG++PQ+
Sbjct: 64 TSAATTTFWRGMEAQFQEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS 123
Query: 119 ETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIV 178
ETVW Q+ KY VP+M+FVNKMDR GA++ + IK + +PI NIG EE ++G++
Sbjct: 124 ETVWRQADKYGVPRMVFVNKMDRAGADFLRVVGQIKHRLGANPVPIQLNIGAEEEFKGVI 183
Query: 179 DIINKKSFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-Y 233
D+I K+ W E S + I D L + ++E + E +EKY+ +
Sbjct: 184 DLIKMKAINWNEADQGMSFTYEEIPADMLELAQEWRNHLVEAAAEASEELMEKYLEDGEL 243
Query: 234 SINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV------DFKNN 287
S +IK ++R+ + N+I+ CGS+ KNKG++ +L+++ E+LPSP DV D + N
Sbjct: 244 SEVEIKQALRQRTINNEIVLAACGSAFKNKGVQAVLDAVIEFLPSPTDVPAIKGIDDREN 303
Query: 288 DYNINLNSNK-FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILR 346
+ + N+ F SL FKI DPF+GSL+FIR+YSG + GD VYNS K+ KE+ RI++
Sbjct: 304 SVERHADDNEPFSSLAFKIATDPFVGSLTFIRVYSGVVNSGDAVYNSVKQKKERFGRIVQ 363
Query: 347 MFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFK 406
M AN + +I + GDI +GLK+ +TGDTLC + + LE K
Sbjct: 364 MHANKRDEIKEIRAGDIAAAIGLKDVTTGDTLCDPNHVVILERMEFPEPVIQIAVEPRSK 423
Query: 407 NDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISK 466
DQEK+ L K EDPS + + TG+T++SGMGELHL+IIVDR+ +E + + K
Sbjct: 424 ADQEKMGIALGKLAAEDPSFRVETDAETGQTLISGMGELHLDIIVDRMKREFGVDCNVGK 483
Query: 467 PQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPK 526
PQV+Y+E+I+ EGK+++QSGG+GQYGHV ++IEP E + F+F I GG IPK
Sbjct: 484 PQVAYRETIRGKSEVEGKFVRQSGGRGQYGHVWLKIEPA--EPGQGFVFVDAIAGGVIPK 541
Query: 527 EFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXX 586
EFI + KGI Q+N GV+ GYPV+ +K L +GSFH VDSSE
Sbjct: 542 EFINPVAKGIEEQMNNGVLAGYPVLDVKATLFDGSFHDVDSSEMAFKIAGSMAFKKGALE 601
Query: 587 XXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE-NFKIINSYIPLRELFGY 645
+LEP+MKVE+ P +++G VVGD+N++RGII + + KII++ +PL E+FGY
Sbjct: 602 AQPVLLEPLMKVEITTPEDWMGDVVGDLNRRRGIIEGMDEGPAGLKIIHAKVPLSEMFGY 661
Query: 646 STDLRSNTKG 655
+TDLRS T+G
Sbjct: 662 ATDLRSATQG 671
|
|
| TIGR_CMR|VC_0361 VC_0361 "elongation factor G" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1562 (554.9 bits), Expect = 2.2e-160, P = 2.2e-160
Identities = 316/670 (47%), Positives = 432/670 (64%)
Query: 2 KNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI 61
K + +RNIGI AHVDAGKTTTTERILFY+G SHKIGEVH G DWM QEQERGITI
Sbjct: 4 KTPIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATMDWMVQEQERGITI 63
Query: 62 TSASVSIFW---EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
TSA+ + FW E ++ INIIDTPGHVDFTIEVERSLRVLDGAV++ C +SG++PQ+
Sbjct: 64 TSAATTTFWRGMEAQFQEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS 123
Query: 119 ETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIV 178
ETVW Q+ KY VP+M+FVNKMDR GA++ + IK + +PI NIG EE ++G++
Sbjct: 124 ETVWRQADKYGVPRMVFVNKMDRAGADFLRVVGQIKHRLGANPVPIQLNIGAEEEFKGVI 183
Query: 179 DIINKKSFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-Y 233
D+I K+ W E S + I D L + ++E + E +EKY+ +
Sbjct: 184 DLIKMKAINWNEADQGMSFTYEEIPADMLELAQEWRNHLVEAAAEASEELMEKYLEDGEL 243
Query: 234 SINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV------DFKNN 287
S +IK ++R+ + N+I+ CGS+ KNKG++ +L+++ E+LPSP DV D + N
Sbjct: 244 SEVEIKQALRQRTINNEIVLAACGSAFKNKGVQAVLDAVIEFLPSPTDVPAIKGIDDREN 303
Query: 288 DYNINLNSNK-FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILR 346
+ + N+ F SL FKI DPF+GSL+FIR+YSG + GD VYNS K+ KE+ RI++
Sbjct: 304 SVERHADDNEPFSSLAFKIATDPFVGSLTFIRVYSGVVNSGDAVYNSVKQKKERFGRIVQ 363
Query: 347 MFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFK 406
M AN + +I + GDI +GLK+ +TGDTLC + + LE K
Sbjct: 364 MHANKRDEIKEIRAGDIAAAIGLKDVTTGDTLCDPNHVVILERMEFPEPVIQIAVEPRSK 423
Query: 407 NDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISK 466
DQEK+ L K EDPS + + TG+T++SGMGELHL+IIVDR+ +E + + K
Sbjct: 424 ADQEKMGIALGKLAAEDPSFRVETDAETGQTLISGMGELHLDIIVDRMKREFGVDCNVGK 483
Query: 467 PQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPK 526
PQV+Y+E+I+ EGK+++QSGG+GQYGHV ++IEP E + F+F I GG IPK
Sbjct: 484 PQVAYRETIRGKSEVEGKFVRQSGGRGQYGHVWLKIEPA--EPGQGFVFVDAIAGGVIPK 541
Query: 527 EFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXX 586
EFI + KGI Q+N GV+ GYPV+ +K L +GSFH VDSSE
Sbjct: 542 EFINPVAKGIEEQMNNGVLAGYPVLDVKATLFDGSFHDVDSSEMAFKIAGSMAFKKGALE 601
Query: 587 XXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE-NFKIINSYIPLRELFGY 645
+LEP+MKVE+ P +++G VVGD+N++RGII + + KII++ +PL E+FGY
Sbjct: 602 AQPVLLEPLMKVEITTPEDWMGDVVGDLNRRRGIIEGMDEGPAGLKIIHAKVPLSEMFGY 661
Query: 646 STDLRSNTKG 655
+TDLRS T+G
Sbjct: 662 ATDLRSATQG 671
|
|
| TIGR_CMR|GSU_2860 GSU_2860 "translation elongation factor G" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1549 (550.3 bits), Expect = 5.3e-159, P = 5.3e-159
Identities = 307/688 (44%), Positives = 440/688 (63%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGI+AH+DAGKTTTTERIL+Y+G +HKIGEVH G DWM+QEQERGITITSA+ +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGVTHKIGEVHEGAATMDWMEQEQERGITITSAATTC 70
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
FW ++ +NIIDTPGHVDFTIEVERSLRVLDGAV + C+ G++PQ+ETVW Q+ KY
Sbjct: 71 FWGDHR----VNIIDTPGHVDFTIEVERSLRVLDGAVAVFCSVGGVEPQSETVWRQADKY 126
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
+VP++ F+NKMDR+GA++ + I+ + +PI IG E+ Y G+VD++ K+ W
Sbjct: 127 RVPRIAFINKMDRVGADFFRGVGMIRDRLKANPVPIQLPIGAEDTYRGVVDLVEMKAIIW 186
Query: 189 KENSIIIK----NIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDIKNSIR 243
E S+ K I D Y E ++E ++ D+ +EKY+ + ++IK ++R
Sbjct: 187 DEESLGAKYHEAEIPADLAEMAQEYREKLIEEIATFDDALMEKYLGGEELTTDEIKAAVR 246
Query: 244 KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV------DFKNNDYNINLNSNK 297
K + +I P++CGS+ KNKG++ LL+S+ YLPSP D+ D K+ + S+
Sbjct: 247 KATIDIQICPVICGSAFKNKGVQNLLDSVVAYLPSPLDIPAITGIDAKSGEEITRKASDD 306
Query: 298 --FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDI 355
F +L FKI DPF+G L F R+YSG + G VYNSTK+ KE+I R+L+M AN +++I
Sbjct: 307 EPFSALAFKIMTDPFVGQLCFFRVYSGVLNSGSYVYNSTKEKKERIGRLLKMHANKREEI 366
Query: 356 NDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQEKLLNI 415
+ + GDI VGLK ++TGDTLC + LE+ K DQEKL
Sbjct: 367 KEVYAGDIAAAVGLKYTTTGDTLCPEDSPVVLESIEFPEPVIAIAIEPKTKADQEKLGIS 426
Query: 416 LQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESI 475
LQK EDPS + + TG+TI+SGMGELHLEIIVDR+++E ++ + KPQV+Y+E++
Sbjct: 427 LQKLASEDPSFRVRTDEETGQTIISGMGELHLEIIVDRLMREFKVEANVGKPQVAYRETV 486
Query: 476 KKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKG 535
K V EGK+++QSGG+GQYGHV I +EP E + + F I GG +P+E+IPA++KG
Sbjct: 487 TKKVKVEGKFVRQSGGRGQYGHVWIELEP--QEAGKGYEFVDAIKGGVVPREYIPAVDKG 544
Query: 536 IMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYILEPI 595
I + GV+ GYP + KV LV+GS+H VDSSE +LEPI
Sbjct: 545 IQEAMETGVLAGYPTVDFKVALVDGSYHEVDSSEMAFKIAGSMAFKEAAAKAGPVLLEPI 604
Query: 596 MKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
M VEV +P E++G V+GD+N +RG I + +++++ +PL ++FGY+TDLRS T+G
Sbjct: 605 MSVEVVVPEEYMGDVIGDLNSRRGRIMGMEGRAGAQVVSAMVPLAQMFGYATDLRSATQG 664
Query: 656 TIGHV---DHGKTTLTAALTKVSSEIYG 680
+ DH + + ++ +++ G
Sbjct: 665 RATYTMTFDHYEQVPKSVSEEIVAKVKG 692
|
|
| TIGR_CMR|SO_0228 SO_0228 "translation elongation factor G" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1540 (547.2 bits), Expect = 4.8e-158, P = 4.8e-158
Identities = 299/664 (45%), Positives = 435/664 (65%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
+RNIGI AHVDAGKTTTTER+LFY+G SHKIGEVH G TDWM QEQERGITITSA+V+
Sbjct: 10 YRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGAATTDWMVQEQERGITITSAAVT 69
Query: 68 IFW---EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
FW + ++ INIIDTPGHVDFTIEVERSLRVLDGAV++ C +SG++PQ+ETVW Q
Sbjct: 70 TFWRGMDAQFTEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGASGVEPQSETVWRQ 129
Query: 125 SQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKK 184
+ KY+VP+++FVNKMDR GA++ + I+ + +PI NIG EEN+ G++D+I K
Sbjct: 130 ADKYRVPRIVFVNKMDRAGADFERVVKQIRTRLGATCVPIQLNIGAEENFTGVIDLIKMK 189
Query: 185 SFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDIK 239
+ W E + + I + + +E ++E + + ++KY+ S +IK
Sbjct: 190 AINWNEADQGMTFSYEAIPAHLTAKAEEMHEFLVEAAAEASDELMDKYLEEGTLSEEEIK 249
Query: 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD----FKNNDYNINLNS 295
++R+ + N+I+ CGS+ KNKG++ +L+++ E+LP+P DV +N+ + S
Sbjct: 250 KALRQRTINNEIVLATCGSAFKNKGVQAVLDAVVEFLPAPVDVPPIKGIDDNEQEVERPS 309
Query: 296 NK---FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSK 352
+ F +L FKI DPF+G+L+FIR+YSG ++ G VYNS K+ +E+I RI++M AN +
Sbjct: 310 DDNAPFAALAFKIATDPFVGTLTFIRVYSGVLESGSGVYNSVKQKRERIGRIVQMHANDR 369
Query: 353 KDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQEKL 412
++ + GDI +GLKE +TGDTLC + LE K DQ+K+
Sbjct: 370 TELKEVRAGDIAAAIGLKEVTTGDTLCDNDHKVILERMEFPEPVITIAVEPKSKADQDKM 429
Query: 413 LNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYK 472
LQK EDPS + + + +T++SGMGELHL+IIVDR+ +E ++ + KPQV+Y+
Sbjct: 430 GIALQKLAAEDPSFRVETDEESSQTLISGMGELHLDIIVDRMRREFGVECNVGKPQVAYR 489
Query: 473 ESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAI 532
E+I+ V EGK+++QSGG+GQ+GHV +++EP E + F + I+GG +P+EFIPA+
Sbjct: 490 ETIRGSVEAEGKFVRQSGGRGQFGHVWLKLEPN--EEGAGYEFINAIVGGVVPREFIPAV 547
Query: 533 EKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYIL 592
+KGI Q+ GV+ G+PV+ +KV L +GS+H VDS+E +L
Sbjct: 548 DKGIQEQMKNGVLAGFPVLDVKVTLFDGSYHDVDSNEMAFKIAGSMGFKKGALEAKPVLL 607
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIID-HENFKIINSYIPLRELFGYSTDLRS 651
EP MKVEV P ++G VVGD+N++RG+I + D KII++ +PL E+FGY+TDLRS
Sbjct: 608 EPCMKVEVTTPENYMGDVVGDLNRRRGLIEGMDDGFGGIKIIHAVVPLSEMFGYATDLRS 667
Query: 652 NTKG 655
T+G
Sbjct: 668 ATQG 671
|
|
| TIGR_CMR|CPS_4765 CPS_4765 "translation elongation factor G" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1531 (544.0 bits), Expect = 4.3e-157, P = 4.3e-157
Identities = 309/666 (46%), Positives = 436/666 (65%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
+RNIGI AHVDAGKTTTTER+LFY+G SHKIGEVH G DWM+QEQERGITITSA+ +
Sbjct: 10 YRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGAATMDWMEQEQERGITITSAATT 69
Query: 68 IFWE--VNKFK-YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
FW+ +F+ + INIIDTPGHVDFTIEVERSLRVLDGAV+++C SSG+QPQTETVW Q
Sbjct: 70 CFWKGMEGQFEDHRINIIDTPGHVDFTIEVERSLRVLDGAVLVLCGSSGVQPQTETVWRQ 129
Query: 125 SQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKK 184
+KY VP+++FVNKMDR GA++ + +K + +PI+ IG E+++EG+VD+I K
Sbjct: 130 MEKYAVPRIVFVNKMDRTGADFLYVVEQLKTRLGANAVPIHLAIGAEDDFEGVVDLIKMK 189
Query: 185 SFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIK 239
+ W + + + I D + + E ++ + +E ++KY+ + + +IK
Sbjct: 190 AINWNASDQGMTFSYEEIPADMQDMAEEWRENLISEAAEANEELMDKYLEEGDLTEEEIK 249
Query: 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV-------DFKNNDYNIN 292
+R L N+II CGS+ KNKG++ +L+++ EYLPSP +V D K+ I
Sbjct: 250 VGLRARTLANEIILCSCGSAFKNKGVQAVLDAVIEYLPSPTEVAAITGINDDKDESEGIR 309
Query: 293 LNSNK--FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFAN 350
++ F +L FKI DPF+G+L+F R+YSG ++ GD VYN K KE+ RI++M AN
Sbjct: 310 SADDEAPFSALAFKIATDPFVGTLTFFRVYSGVVQTGDSVYNPVKGKKERFGRIVQMHAN 369
Query: 351 SKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQE 410
+++I + GDI +GLK+ +TGDTLC I LE QE
Sbjct: 370 DRQEIKEVRAGDIAAAIGLKDVTTGDTLCDAKHIITLERMEFPEPVISVAVEPRTLAAQE 429
Query: 411 KLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVS 470
K+ L K EDPS ++ ++ TG+TI+SGMGELHL+I+V+R+ +E ++ + PQVS
Sbjct: 430 KMGIALGKLAAEDPSFRVATDDETGQTIISGMGELHLDILVERMKREFGVECNVGNPQVS 489
Query: 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIP 530
Y+E+I+ V EGK+I+QSGGKGQ+GHV +++EP E F F +EI+GG++PKEFIP
Sbjct: 490 YRETIRGTVEVEGKFIRQSGGKGQFGHVWLKMEPN--EEGAGFEFVNEIVGGTVPKEFIP 547
Query: 531 AIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSY 590
A+EKG Q++ GV+ GYP++ IKV L +GSFH VDS+E
Sbjct: 548 AVEKGCKEQMDSGVLAGYPLLDIKVTLYDGSFHDVDSNEIAFKVAASMGFRKGALEANPV 607
Query: 591 ILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE-NFKIINSYIPLRELFGYSTDL 649
ILEP+MKVEV P +G VVGD+N++RG+I+ + + KI+N+ +PL E+FGY+TDL
Sbjct: 608 ILEPMMKVEVTTPEANMGDVVGDLNRRRGMIDGMDEGPAGSKIVNALVPLAEMFGYATDL 667
Query: 650 RSNTKG 655
RS T+G
Sbjct: 668 RSATQG 673
|
|
| TIGR_CMR|ECH_0961 ECH_0961 "translation elongation factor G" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
Identities = 301/667 (45%), Positives = 430/667 (64%)
Query: 3 NKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITIT 62
N++ RNIGI+AH+DAGKTTTTERILFY+G ++IGEVH G DWM+QE+ERGITIT
Sbjct: 5 NELSKCRNIGIMAHIDAGKTTTTERILFYTGKQNRIGEVHEGAASMDWMEQEKERGITIT 64
Query: 63 SASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW 122
SA+ + FW ++ INIIDTPGHVDFTIEVERSLRVLDGAV + +G++PQ+ETVW
Sbjct: 65 SAATTCFWNGHR----INIIDTPGHVDFTIEVERSLRVLDGAVAVFDGVAGVEPQSETVW 120
Query: 123 FQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIIN 182
Q+ KY VP++ F+NKMDR+GA++ C+ + ++ L + IGIE+++ G+VD++
Sbjct: 121 RQADKYNVPRICFMNKMDRMGADFYRCVDMVVERLGATPLVLQLPIGIEKDFVGVVDLLE 180
Query: 183 KKSFFWKENSIIIK----NIDKDQLS-AFDYYNELMLETLSNNDEFFLEKYINNNYSIND 237
+S W E+S+ I KD L A +Y N+L+ + NDE + S++
Sbjct: 181 MRSIIWDEDSLGASFHYGEIPKDMLDKAQEYRNKLLESAVELNDEAMNLYFEGKEISVSL 240
Query: 238 IKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV------DFKNNDYNI 291
+K+ IR V+++K +P++CGS+ KN+G++ LL+++ ++LP+P D+ D K ++ I
Sbjct: 241 LKSCIRAGVIQSKFVPVLCGSAFKNRGVQPLLDAVVDFLPAPNDIPMMEALDVKTSN-TI 299
Query: 292 NLNSN---KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMF 348
N+ S+ KFV+L FK+ D F+GSL+FIRIYSG + V N+ K E I RIL M
Sbjct: 300 NIKSSIDGKFVALAFKVMTDKFVGSLTFIRIYSGRLSSKTTVLNAVKNSTESIGRILLMH 359
Query: 349 ANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKND 408
AN+++DI +A GDIV + GLK++ TGDTLC+L + I LE D
Sbjct: 360 ANNREDITEAKAGDIVALAGLKKTVTGDTLCTLDQPIILERMEFPEPVMEIAVEPKSTAD 419
Query: 409 QEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQ 468
QEK+ L + EDPSL + +N +G+TIL GMGELHLE+IVDR+ +E N++ I PQ
Sbjct: 420 QEKMGIALSRLVAEDPSLGMCVNPESGQTILKGMGELHLEVIVDRMRREFNVEANIGAPQ 479
Query: 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEF 528
V+Y+E+I K V E + KQ+GG GQ+ V I EP L F F+S+I GG+IPKE+
Sbjct: 480 VAYRETITKSVEIEYIHKKQTGGAGQFAKVNILFEP--LPPGSGFQFESKITGGAIPKEY 537
Query: 529 IPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXX 588
IP ++ G+ N G++ G+PVI K LV+G+FH VDSS
Sbjct: 538 IPGVQNGLENIRGSGMLAGFPVIDFKATLVDGAFHEVDSSPLAFELAAKGAFRDMVNKAG 597
Query: 589 SYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTD 648
+ +LEPIMKVE+ P E++G V+GDIN +RG + + D N K+I ++IPL ++FGY D
Sbjct: 598 AILLEPIMKVEIITPDEYMGDVIGDINSRRGRVAEMQDRHNTKVILAFIPLAKMFGYVKD 657
Query: 649 LRSNTKG 655
LRS ++G
Sbjct: 658 LRSMSQG 664
|
|
| UNIPROTKB|P0A556 fusA "Elongation factor G" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
Identities = 274/663 (41%), Positives = 430/663 (64%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RN GI+AH+DAGKTTTTERIL+Y+G ++KIGEVH G DWM+QEQERGITITSA+ +
Sbjct: 14 RNFGIMAHIDAGKTTTTERILYYTGINYKIGEVHDGAATMDWMEQEQERGITITSAATTT 73
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
FW+ N+ +NIIDTPGHVDFT+EVER+LRVLDGAV + G++PQ+E VW Q+ KY
Sbjct: 74 FWKDNQ----LNIIDTPGHVDFTVEVERNLRVLDGAVAVFDGKEGVEPQSEQVWRQADKY 129
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
VP++ FVNKMD+IGA++ + + ++ +PI +G E ++EG+VD++ + W
Sbjct: 130 DVPRICFVNKMDKIGADFYFSVRTMGERLGANAVPIQLPVGAEADFEGVVDLVEMNAKVW 189
Query: 189 KENSIIIKNIDKDQLSA-----FDYYNELMLETLSNNDEFFLEKYINNN-YSINDIKNSI 242
+ + + + D ++ A + Y +LE ++ +DE LEKY+ ++++IK +I
Sbjct: 190 RGETKLGETYDTVEIPADLAEQAEEYRTKLLEVVAESDEHLLEKYLGGEELTVDEIKGAI 249
Query: 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD-------FKNNDYNIN--L 293
RKL + ++I P++CGS+ KNKG++ +L+++ +YLPSP DV K ++ +
Sbjct: 250 RKLTIASEIYPVLCGSAFKNKGVQPMLDAVVDYLPSPLDVPPAIGHAPAKEDEEVVRKAT 309
Query: 294 NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKK 353
F +L FKI PF G L++IR+YSG ++ G V N+TK KE++ ++ +M +N +
Sbjct: 310 TDEPFAALAFKIATHPFFGKLTYIRVYSGTVESGSQVINATKGKKERLGKLFQMHSNKEN 369
Query: 354 DINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQEKLL 413
++ A G I ++GLK+++TGDTL ++ I LE+ K+DQEKL
Sbjct: 370 PVDRASAGHIYAVIGLKDTTTGDTLSDPNQQIVLESMTFPDPVIEVAIEPKTKSDQEKLS 429
Query: 414 NILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKE 473
+QK +EDP+ + +++ TG+T++ GMGELHL+I+VDR+ +E ++ + KPQV+YKE
Sbjct: 430 LSIQKLAEEDPTFKVHLDSETGQTVIGGMGELHLDILVDRMRREFKVEANVGKPQVAYKE 489
Query: 474 SIKKIVTQ-EGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAI 532
+IK++V E + KQ+GG GQ+ V+I +EP + E + F+S++ GG IP+E+IP++
Sbjct: 490 TIKRLVQNVEYTHKKQTGGSGQFAKVIINLEPFTGEEGATYEFESKVTGGRIPREYIPSV 549
Query: 533 EKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYIL 592
+ G + + YGV+ GYP++ +KV L++G++H VDSSE IL
Sbjct: 550 DAGAQDAMQYGVLAGYPLVNLKVTLLDGAYHEVDSSEMAFKIAGSQVLKKAAALAQPVIL 609
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSN 652
EPIM VEV P +++G V+GD+N +RG I + + +++ +++PL E+FGY DLRS
Sbjct: 610 EPIMAVEVTTPEDYMGDVIGDLNSRRGQIQAMEERAGARVVRAHVPLSEMFGYVGDLRSK 669
Query: 653 TKG 655
T+G
Sbjct: 670 TQG 672
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B9L7K0 | EFG_NAUPA | No assigned EC number | 0.4925 | 0.6346 | 0.9350 | yes | N/A |
| Q21M89 | EFG1_SACD2 | No assigned EC number | 0.4791 | 0.6405 | 0.9329 | yes | N/A |
| Q1LSY5 | EFG_BAUCH | No assigned EC number | 0.5007 | 0.6366 | 0.9219 | yes | N/A |
| Q2YB00 | EFG_NITMU | No assigned EC number | 0.4798 | 0.6385 | 0.9367 | yes | N/A |
| A5EX85 | EFG_DICNV | No assigned EC number | 0.4827 | 0.6297 | 0.9198 | yes | N/A |
| B5EFP7 | EFG_GEOBB | No assigned EC number | 0.4969 | 0.6278 | 0.9263 | yes | N/A |
| Q0AIJ8 | EFG_NITEC | No assigned EC number | 0.4880 | 0.6376 | 0.9353 | yes | N/A |
| Q3J8R1 | EFG_NITOC | No assigned EC number | 0.4820 | 0.6376 | 0.9340 | yes | N/A |
| C5BGM8 | EFG_EDWI9 | No assigned EC number | 0.4909 | 0.6336 | 0.9216 | yes | N/A |
| Q8PNS6 | EFG_XANAC | No assigned EC number | 0.4682 | 0.6523 | 0.9446 | yes | N/A |
| Q1CS71 | EFG_HELPH | No assigned EC number | 0.4939 | 0.6278 | 0.9263 | yes | N/A |
| A6Q1M7 | EFG_NITSB | No assigned EC number | 0.4977 | 0.6346 | 0.9364 | yes | N/A |
| Q82T70 | EFG_NITEU | No assigned EC number | 0.4857 | 0.6385 | 0.9367 | yes | N/A |
| A7H4P5 | EFG_CAMJD | No assigned EC number | 0.4810 | 0.6278 | 0.9276 | yes | N/A |
| Q7MA53 | EFG_WOLSU | No assigned EC number | 0.5007 | 0.6278 | 0.9249 | yes | N/A |
| Q83ES7 | EFG_COXBU | No assigned EC number | 0.4818 | 0.6317 | 0.9227 | yes | N/A |
| C5BQ43 | EFG_TERTT | No assigned EC number | 0.4880 | 0.6405 | 0.9302 | yes | N/A |
| B5Z8J0 | EFG_HELPG | No assigned EC number | 0.4969 | 0.6278 | 0.9263 | yes | N/A |
| Q1R0H8 | EFG_CHRSD | No assigned EC number | 0.5036 | 0.6395 | 0.9249 | yes | N/A |
| A9NAM1 | EFG_COXBR | No assigned EC number | 0.4818 | 0.6317 | 0.9227 | yes | N/A |
| Q3A9R2 | EFG_CARHZ | No assigned EC number | 0.4864 | 0.6346 | 0.9364 | yes | N/A |
| A7I3T6 | EFG_CAMHC | No assigned EC number | 0.4917 | 0.6356 | 0.9392 | yes | N/A |
| Q8R602 | EFG_FUSNN | No assigned EC number | 0.4954 | 0.6268 | 0.9235 | yes | N/A |
| B2UUV6 | EFG_HELPS | No assigned EC number | 0.4954 | 0.6278 | 0.9263 | yes | N/A |
| Q748Y8 | EFG2_GEOSL | No assigned EC number | 0.4893 | 0.6278 | 0.9263 | yes | N/A |
| Q9ZK24 | EFG_HELPJ | No assigned EC number | 0.4954 | 0.6278 | 0.9263 | yes | N/A |
| A1TYJ4 | EFG_MARAV | No assigned EC number | 0.4741 | 0.6454 | 0.9400 | yes | N/A |
| Q0VSL8 | EFG_ALCBS | No assigned EC number | 0.4939 | 0.6327 | 0.9241 | yes | N/A |
| Q39Y09 | EFG1_GEOMG | No assigned EC number | 0.4924 | 0.6278 | 0.9263 | yes | N/A |
| B8D0C1 | EFG_HALOH | No assigned EC number | 0.4848 | 0.6278 | 0.9303 | yes | N/A |
| P56002 | EFG_HELPY | No assigned EC number | 0.4969 | 0.6278 | 0.9263 | yes | N/A |
| Q3SLQ2 | EFG_THIDA | No assigned EC number | 0.4781 | 0.6327 | 0.9281 | yes | N/A |
| Q2RFP4 | EFG_MOOTA | No assigned EC number | 0.4901 | 0.6258 | 0.9234 | yes | N/A |
| Q8D3H2 | EFG_WIGBR | No assigned EC number | 0.5163 | 0.6415 | 0.9290 | yes | N/A |
| A9KD34 | EFG_COXBN | No assigned EC number | 0.4818 | 0.6317 | 0.9227 | yes | N/A |
| A5D5I7 | EFG_PELTS | No assigned EC number | 0.4795 | 0.6278 | 0.9263 | yes | N/A |
| A1VYJ8 | EFG_CAMJJ | No assigned EC number | 0.4810 | 0.6278 | 0.9276 | yes | N/A |
| B6J5C9 | EFG_COXB1 | No assigned EC number | 0.4803 | 0.6317 | 0.9227 | yes | N/A |
| B6JN34 | EFG_HELP2 | No assigned EC number | 0.4969 | 0.6278 | 0.9263 | yes | N/A |
| Q0ABH8 | EFG_ALHEH | No assigned EC number | 0.4659 | 0.6434 | 0.9399 | yes | N/A |
| C4K4F9 | EFG_HAMD5 | No assigned EC number | 0.4791 | 0.6395 | 0.9315 | yes | N/A |
| Q7VJ85 | EFG_HELHP | No assigned EC number | 0.4992 | 0.6346 | 0.9364 | yes | N/A |
| A7GZJ4 | EFG_CAMC5 | No assigned EC number | 0.4834 | 0.6346 | 0.9364 | yes | N/A |
| Q605A9 | EFG2_METCA | No assigned EC number | 0.4805 | 0.6395 | 0.9355 | yes | N/A |
| A8Z6I6 | EFG_CAMC1 | No assigned EC number | 0.4855 | 0.6278 | 0.9263 | yes | N/A |
| B6J266 | EFG_COXB2 | No assigned EC number | 0.4818 | 0.6317 | 0.9227 | yes | N/A |
| Q05FI2 | EFG_CARRP | No assigned EC number | 0.6864 | 0.6376 | 0.9559 | yes | N/A |
| Q2NQL6 | EFG_SODGM | No assigned EC number | 0.4782 | 0.6366 | 0.9272 | yes | N/A |
| Q17VN9 | EFG_HELAH | No assigned EC number | 0.4954 | 0.6278 | 0.9263 | yes | N/A |
| A0RQI0 | EFG_CAMFF | No assigned EC number | 0.4901 | 0.6278 | 0.9276 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1021 | |||
| PRK00007 | 693 | PRK00007, PRK00007, elongation factor G; Reviewed | 0.0 | |
| PRK12739 | 691 | PRK12739, PRK12739, elongation factor G; Reviewed | 0.0 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 0.0 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 0.0 | |
| PRK00049 | 396 | PRK00049, PRK00049, elongation factor Tu; Reviewed | 0.0 | |
| PRK12735 | 396 | PRK12735, PRK12735, elongation factor Tu; Reviewed | 0.0 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 0.0 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 0.0 | |
| PRK12736 | 394 | PRK12736, PRK12736, elongation factor Tu; Reviewed | 0.0 | |
| COG0050 | 394 | COG0050, TufB, GTPases - translation elongation fa | 0.0 | |
| TIGR00485 | 394 | TIGR00485, EF-Tu, translation elongation factor TU | 0.0 | |
| CHL00071 | 409 | CHL00071, tufA, elongation factor Tu | 0.0 | |
| PLN03127 | 447 | PLN03127, PLN03127, Elongation factor Tu; Provisio | 0.0 | |
| PLN03126 | 478 | PLN03126, PLN03126, Elongation factor Tu; Provisio | 1e-177 | |
| cd01886 | 270 | cd01886, EF-G, Elongation factor G (EF-G) family i | 1e-143 | |
| cd01884 | 195 | cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b | 1e-128 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 2e-80 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 6e-78 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 3e-75 | |
| cd04170 | 268 | cd04170, EF-G_bact, Elongation factor G (EF-G) fam | 4e-67 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 5e-62 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 6e-60 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 4e-59 | |
| cd01434 | 116 | cd01434, EFG_mtEFG1_IV, EFG_mtEFG1_IV: domains sim | 7e-55 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 5e-54 | |
| TIGR00483 | 426 | TIGR00483, EF-1_alpha, translation elongation fact | 1e-52 | |
| TIGR00475 | 581 | TIGR00475, selB, selenocysteine-specific elongatio | 3e-50 | |
| COG3276 | 447 | COG3276, SelB, Selenocysteine-specific translation | 2e-49 | |
| cd03697 | 87 | cd03697, EFTU_II, EFTU_II: Elongation factor Tu do | 4e-49 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 4e-46 | |
| PTZ00141 | 446 | PTZ00141, PTZ00141, elongation factor 1- alpha; Pr | 3e-45 | |
| cd03707 | 90 | cd03707, EFTU_III, Domain III of elongation factor | 6e-45 | |
| smart00889 | 120 | smart00889, EFG_IV, Elongation factor G, domain IV | 7e-45 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 1e-44 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 2e-43 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 3e-42 | |
| cd01885 | 218 | cd01885, EF2, Elongation Factor 2 (EF2) in archaea | 5e-42 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 3e-41 | |
| pfam03764 | 120 | pfam03764, EFG_IV, Elongation factor G, domain IV | 5e-40 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 8e-40 | |
| TIGR03680 | 406 | TIGR03680, eif2g_arch, translation initiation fact | 3e-39 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 1e-38 | |
| PRK00741 | 526 | PRK00741, prfC, peptide chain release factor 3; Pr | 7e-38 | |
| cd01883 | 219 | cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1 | 5e-37 | |
| PRK04000 | 411 | PRK04000, PRK04000, translation initiation factor | 2e-36 | |
| COG5258 | 527 | COG5258, GTPBP1, GTPase [General function predicti | 5e-36 | |
| PRK10512 | 614 | PRK10512, PRK10512, selenocysteinyl-tRNA-specific | 5e-35 | |
| PLN00043 | 447 | PLN00043, PLN00043, elongation factor 1-alpha; Pro | 2e-34 | |
| COG5257 | 415 | COG5257, GCD11, Translation initiation factor 2, g | 1e-33 | |
| cd01891 | 194 | cd01891, TypA_BipA, Tyrosine phosphorylated protei | 1e-32 | |
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 3e-32 | |
| cd04088 | 83 | cd04088, EFG_mtEFG_II, EFG_mtEFG_II: this subfamil | 2e-31 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 9e-31 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 4e-30 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 5e-29 | |
| pfam03143 | 91 | pfam03143, GTP_EFTU_D3, Elongation factor Tu C-ter | 8e-29 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 3e-28 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 3e-27 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 8e-27 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 4e-25 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 5e-25 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 1e-24 | |
| smart00838 | 85 | smart00838, EFG_C, Elongation factor G C-terminus | 1e-24 | |
| cd03713 | 78 | cd03713, EFG_mtEFG_C, EFG_mtEFG_C: domains similar | 1e-24 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 3e-24 | |
| cd01680 | 116 | cd01680, EFG_like_IV, Elongation Factor G-like dom | 3e-24 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 3e-24 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 8e-24 | |
| cd01888 | 197 | cd01888, eIF2_gamma, Gamma subunit of initiation f | 9e-24 | |
| cd03706 | 93 | cd03706, mtEFTU_III, Domain III of mitochondrial E | 3e-23 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 4e-23 | |
| cd04092 | 83 | cd04092, mtEFG2_II_like, mtEFG2_C: C-terminus of m | 4e-23 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 1e-22 | |
| TIGR02034 | 406 | TIGR02034, CysN, sulfate adenylyltransferase, larg | 2e-22 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 6e-22 | |
| cd01891 | 194 | cd01891, TypA_BipA, Tyrosine phosphorylated protei | 2e-21 | |
| cd01514 | 79 | cd01514, Elongation_Factor_C, Elongation factor G | 2e-21 | |
| PTZ00327 | 460 | PTZ00327, PTZ00327, eukaryotic translation initiat | 3e-21 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 5e-21 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 6e-21 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 8e-21 | |
| PRK05506 | 632 | PRK05506, PRK05506, bifunctional sulfate adenylylt | 9e-21 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 1e-20 | |
| pfam00679 | 89 | pfam00679, EFG_C, Elongation factor G C-terminus | 1e-20 | |
| cd03696 | 83 | cd03696, selB_II, selB_II: this subfamily represen | 2e-20 | |
| PRK05124 | 474 | PRK05124, cysN, sulfate adenylyltransferase subuni | 1e-19 | |
| cd04091 | 81 | cd04091, mtEFG1_II_like, mtEFG1_C: C-terminus of m | 3e-19 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 4e-19 | |
| cd04097 | 78 | cd04097, mtEFG1_C, mtEFG1_C: C-terminus of mitocho | 8e-19 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 1e-18 | |
| cd01885 | 218 | cd01885, EF2, Elongation Factor 2 (EF2) in archaea | 1e-18 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 1e-17 | |
| pfam03144 | 70 | pfam03144, GTP_EFTU_D2, Elongation factor Tu domai | 2e-17 | |
| cd01342 | 83 | cd01342, Translation_Factor_II_like, Translation_F | 2e-17 | |
| cd04170 | 268 | cd04170, EF-G_bact, Elongation factor G (EF-G) fam | 6e-17 | |
| cd03693 | 91 | cd03693, EF1_alpha_II, EF1_alpha_II: this family r | 6e-16 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 7e-15 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 9e-15 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 1e-14 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 2e-13 | |
| TIGR00483 | 426 | TIGR00483, EF-1_alpha, translation elongation fact | 2e-13 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 2e-13 | |
| cd01886 | 270 | cd01886, EF-G, Elongation factor G (EF-G) family i | 4e-13 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 4e-13 | |
| COG0050 | 394 | COG0050, TufB, GTPases - translation elongation fa | 5e-13 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 5e-13 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 6e-13 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 1e-12 | |
| PLN03126 | 478 | PLN03126, PLN03126, Elongation factor Tu; Provisio | 2e-12 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 2e-12 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 2e-12 | |
| cd01883 | 219 | cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1 | 5e-12 | |
| TIGR00485 | 394 | TIGR00485, EF-Tu, translation elongation factor TU | 7e-12 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 9e-12 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 2e-11 | |
| PRK12736 | 394 | PRK12736, PRK12736, elongation factor Tu; Reviewed | 2e-11 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 2e-11 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 4e-11 | |
| PLN03127 | 447 | PLN03127, PLN03127, Elongation factor Tu; Provisio | 6e-11 | |
| cd01884 | 195 | cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b | 1e-10 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 1e-10 | |
| cd03698 | 83 | cd03698, eRF3_II_like, eRF3_II_like: domain simila | 1e-10 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 2e-10 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 3e-10 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 4e-10 | |
| cd01342 | 83 | cd01342, Translation_Factor_II_like, Translation_F | 4e-10 | |
| PRK12735 | 396 | PRK12735, PRK12735, elongation factor Tu; Reviewed | 6e-10 | |
| CHL00071 | 409 | CHL00071, tufA, elongation factor Tu | 6e-10 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 7e-10 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 8e-10 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 8e-10 | |
| PRK12739 | 691 | PRK12739, PRK12739, elongation factor G; Reviewed | 1e-09 | |
| cd04096 | 80 | cd04096, eEF2_snRNP_like_C, eEF2_snRNP_like_C: thi | 1e-09 | |
| cd03691 | 86 | cd03691, BipA_TypA_II, BipA_TypA_II: domain II of | 1e-09 | |
| pfam03144 | 70 | pfam03144, GTP_EFTU_D2, Elongation factor Tu domai | 2e-09 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 2e-09 | |
| CHL00189 | 742 | CHL00189, infB, translation initiation factor 2; P | 2e-09 | |
| PRK00049 | 396 | PRK00049, PRK00049, elongation factor Tu; Reviewed | 3e-09 | |
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 3e-09 | |
| cd01684 | 115 | cd01684, Tet_like_IV, EF-G_domain IV_RPP domain is | 5e-09 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 6e-09 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 7e-09 | |
| PTZ00141 | 446 | PTZ00141, PTZ00141, elongation factor 1- alpha; Pr | 1e-08 | |
| PLN00043 | 447 | PLN00043, PLN00043, elongation factor 1-alpha; Pro | 1e-08 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-08 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 3e-08 | |
| cd04089 | 82 | cd04089, eRF3_II, eRF3_II: domain II of the eukary | 4e-08 | |
| cd03694 | 87 | cd03694, GTPBP_II, Domain II of the GP-1 family of | 7e-08 | |
| CHL00189 | 742 | CHL00189, infB, translation initiation factor 2; P | 1e-07 | |
| cd03695 | 81 | cd03695, CysN_NodQ_II, CysN_NodQ_II: This subfamil | 1e-07 | |
| cd03710 | 79 | cd03710, BipA_TypA_C, BipA_TypA_C: a C-terminal po | 7e-07 | |
| TIGR00491 | 590 | TIGR00491, aIF-2, translation initiation factor aI | 1e-06 | |
| cd01693 | 120 | cd01693, mtEFG2_like_IV, mtEF-G2 domain IV | 1e-06 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 2e-06 | |
| cd01513 | 102 | cd01513, Translation_factor_III, Domain III of Elo | 2e-06 | |
| cd03711 | 78 | cd03711, Tet_C, Tet_C: C-terminus of ribosomal pro | 2e-06 | |
| PRK00741 | 526 | PRK00741, prfC, peptide chain release factor 3; Pr | 3e-06 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 3e-06 | |
| PRK00007 | 693 | PRK00007, PRK00007, elongation factor G; Reviewed | 4e-06 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 4e-06 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 4e-06 | |
| PRK04004 | 586 | PRK04004, PRK04004, translation initiation factor | 4e-06 | |
| TIGR00475 | 581 | TIGR00475, selB, selenocysteine-specific elongatio | 7e-06 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 7e-06 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 9e-06 | |
| TIGR02034 | 406 | TIGR02034, CysN, sulfate adenylyltransferase, larg | 1e-05 | |
| cd03690 | 85 | cd03690, Tet_II, Tet_II: This subfamily represents | 1e-05 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 2e-05 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 2e-05 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 3e-05 | |
| cd04098 | 80 | cd04098, eEF2_C_snRNP, eEF2_C_snRNP: This family i | 3e-05 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 3e-05 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 4e-05 | |
| COG3276 | 447 | COG3276, SelB, Selenocysteine-specific translation | 5e-05 | |
| PRK05506 | 632 | PRK05506, PRK05506, bifunctional sulfate adenylylt | 5e-05 | |
| TIGR03680 | 406 | TIGR03680, eif2g_arch, translation initiation fact | 1e-04 | |
| COG5257 | 415 | COG5257, GCD11, Translation initiation factor 2, g | 1e-04 | |
| PRK05124 | 474 | PRK05124, cysN, sulfate adenylyltransferase subuni | 1e-04 | |
| TIGR00491 | 590 | TIGR00491, aIF-2, translation initiation factor aI | 1e-04 | |
| cd04165 | 224 | cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP | 1e-04 | |
| cd03700 | 93 | cd03700, eEF2_snRNP_like_II, EF2_snRNP_like_II: th | 1e-04 | |
| PRK14845 | 1049 | PRK14845, PRK14845, translation initiation factor | 4e-04 | |
| PRK04000 | 411 | PRK04000, PRK04000, translation initiation factor | 8e-04 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 0.001 | |
| cd03709 | 80 | cd03709, lepA_C, lepA_C: This family represents th | 0.001 | |
| cd01895 | 174 | cd01895, EngA2, EngA2 GTPase contains the second d | 0.002 |
| >gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 904 bits (2339), Expect = 0.0
Identities = 333/662 (50%), Positives = 459/662 (69%), Gaps = 20/662 (3%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
+RNIGI+AH+DAGKTTTTERILFY+G +HKIGEVH G DWM+QEQERGITITSA+ +
Sbjct: 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATT 69
Query: 68 IFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
FW+ + INIIDTPGHVDFTIEVERSLRVLDGAV + A G++PQ+ETVW Q+ K
Sbjct: 70 CFWK----DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK 125
Query: 128 YKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFF 187
YKVP++ FVNKMDR GA++ + IK + +PI IG E++++G+VD++ K+
Sbjct: 126 YKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAII 185
Query: 188 WKENS----IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDIKNSI 242
W E + I D + Y E ++E + DE +EKY+ + +IK ++
Sbjct: 186 WNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAAL 245
Query: 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD----FKNNDYNINL----- 293
RK + N+I+P++CGS+ KNKG++ LL+++ +YLPSP DV + +
Sbjct: 246 RKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKAS 305
Query: 294 NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKK 353
+ F +L FKI DPF+G L+F R+YSG ++ G V NSTK KE+I RIL+M AN ++
Sbjct: 306 DDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKRE 365
Query: 354 DINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLL 413
+I + GDI VGLK+++TGDTLC I LE++E P PVIS+++EP K DQEK+
Sbjct: 366 EIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESMEFPEPVISVAVEPKTKADQEKMG 425
Query: 414 NILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKE 473
LQK +EDPS +S + TG+TI++GMGELHL+IIVDR+ +E ++ + KPQV+Y+E
Sbjct: 426 IALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVGKPQVAYRE 485
Query: 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIE 533
+I+K V EGK++KQSGG+GQYGHVVI EP E + + F ++I+GG IPKE+IPA++
Sbjct: 486 TIRKKVEVEGKFVKQSGGRGQYGHVVIEFEP--NEPGKGYEFVNKIVGGVIPKEYIPAVD 543
Query: 534 KGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILE 593
KGI + GV+ GYPV+ +KV L +GS+H VDSSE AFK A ++A K+A KKAN +LE
Sbjct: 544 KGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLE 603
Query: 594 PIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNT 653
PIMKVEV P E++G V+GD+N +RG I + D K+I + +PL E+FGY+TDLRS T
Sbjct: 604 PIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRGGAKVIRAEVPLSEMFGYATDLRSMT 663
Query: 654 KG 655
+G
Sbjct: 664 QG 665
|
Length = 693 |
| >gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 894 bits (2314), Expect = 0.0
Identities = 326/668 (48%), Positives = 460/668 (68%), Gaps = 19/668 (2%)
Query: 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGIT 60
+ + RNIGI+AH+DAGKTTTTERIL+Y+G SHKIGEVH G DWM+QEQERGIT
Sbjct: 1 REFPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGIT 60
Query: 61 ITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET 120
ITSA+ + FW+ + INIIDTPGHVDFTIEVERSLRVLDGAV + A SG++PQ+ET
Sbjct: 61 ITSAATTCFWK----GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET 116
Query: 121 VWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDI 180
VW Q+ KY VP+++FVNKMDRIGA++ + IK + +PI IG E++++G++D+
Sbjct: 117 VWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDL 176
Query: 181 INKKSFFWKENS----IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSI 235
I K+ W + + ++I D + Y E ++E ++ DE +EKY+ +
Sbjct: 177 IKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITE 236
Query: 236 NDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD-----FKNNDYN 290
+IK +IRK + + P++CGS+ KNKG++ LL+++ +YLPSP DV + +
Sbjct: 237 EEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEE 296
Query: 291 INLNSN---KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRM 347
I ++ F +L FKI DPF+G L+F R+YSG ++ G V N+TK KE+I R+L+M
Sbjct: 297 IERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQM 356
Query: 348 FANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKN 407
AN +++I + + GDI VGLK+++TGDTLC I LE++E P PVIS+++EP K
Sbjct: 357 HANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESMEFPEPVISLAVEPKTKA 416
Query: 408 DQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKP 467
DQ+K+ LQK +EDP+ + + TG+TI+SGMGELHL+IIVDR+ +E ++ + P
Sbjct: 417 DQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAP 476
Query: 468 QVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKE 527
QV+Y+E+I K V EGKY KQSGG+GQYG V I EP E + F F ++I+GG IPKE
Sbjct: 477 QVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEP--NEEGKGFEFVNKIVGGVIPKE 534
Query: 528 FIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKA 587
+IPA+EKG+ + GV+ GYP++ +K L +GS+H VDSSE AFK AA++ALK+A KKA
Sbjct: 535 YIPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKA 594
Query: 588 NSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYST 647
ILEPIMKVEV P E++G V+GD+N++RG I + +I+ +++PL E+FGY+T
Sbjct: 595 GPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGAQIVKAFVPLSEMFGYAT 654
Query: 648 DLRSNTKG 655
DLRS T+G
Sbjct: 655 DLRSATQG 662
|
Length = 691 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 801 bits (2071), Expect = 0.0
Identities = 322/662 (48%), Positives = 455/662 (68%), Gaps = 18/662 (2%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
RNIGI+AH+DAGKTT TERILFY+G KIGEVH G DWM+QEQERGITITSA+ +
Sbjct: 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATT 69
Query: 68 IFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
+FW+ + Y IN+IDTPGHVDFTIEVERSLRVLDGAV+++ A G++PQTETVW Q+ K
Sbjct: 70 LFWKGD---YRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK 126
Query: 128 YKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFF 187
Y VP+++FVNKMDR+GA++ + +K++ +P+ IG EE +EG++D++ K+
Sbjct: 127 YGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVA 186
Query: 188 WKEN-SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKL 245
+ + I D + E +LE L+ DE +EKY+ + +IK ++RK
Sbjct: 187 FGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKG 246
Query: 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV----DFKNNDY-----NINLNSN 296
+ KI+P++CGS+ KNKG++ LL+++ +YLPSP DV +++ +
Sbjct: 247 TIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEG 306
Query: 297 KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIN 356
+LVFKI DPF+G L+F+R+YSG +K G V NSTK KE++ R+L M N +++++
Sbjct: 307 PLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVD 366
Query: 357 DAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLNIL 416
+ GDIV +VGLK+++TGDTLC ++ + LE++E P PVIS+++EP K DQEKL L
Sbjct: 367 EVPAGDIVALVGLKDATTGDTLCDENKPVILESMEFPEPVISVAVEPKTKADQEKLSEAL 426
Query: 417 QKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIK 476
K +EDP+ + + TGETI+SGMGELHLEIIVDR+ +E ++ ++ KPQV+Y+E+I+
Sbjct: 427 NKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAYRETIR 486
Query: 477 KIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGI 536
K EGK+ KQSGG GQYGHV I IEP LE+ F F +I+GG +PKE+IPA+EKG
Sbjct: 487 KKSEVEGKHKKQSGGPGQYGHVYIEIEP--LEDGSGFEFVDKIVGGVVPKEYIPAVEKGF 544
Query: 537 MNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIM 596
+ G + GYPV+ +KV L++GS+H VDSSE AFK AA++A K+A+ KA +LEPIM
Sbjct: 545 REALKSGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIM 604
Query: 597 KVEVNLPSEFLGIVVGDINKKRGII--NTIIDHENFKIINSYIPLRELFGYSTDLRSNTK 654
KVE+ P E++G V+GD+N +RG I +I + +PL E+FGY+TDLRS T+
Sbjct: 605 KVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQ 664
Query: 655 GT 656
G
Sbjct: 665 GR 666
|
Length = 697 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 797 bits (2060), Expect = 0.0
Identities = 298/651 (45%), Positives = 444/651 (68%), Gaps = 14/651 (2%)
Query: 14 IAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN 73
+ H AGKTT TE ILFY+G+ H+IGEV GTT D+M +E+ERGI+ITSA+ + W+ +
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGH 60
Query: 74 KFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM 133
K IN+IDTPGHVDFT EVER+LRVLDGAV+++CA G++PQTETVW Q++KY VP++
Sbjct: 61 K----INLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI 116
Query: 134 IFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKEN-S 192
IFVNKMDR GA++ + +++K V+P+ IG +++ G+VD+++ K++ + E
Sbjct: 117 IFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGP 176
Query: 193 IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKLVLKNKI 251
I + L + E +LE L+ D+ +EKY+ S +IK +RK L +I
Sbjct: 177 SEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEI 236
Query: 252 IPIMCGSSLKNKGIEFLLNSICEYLPSPYDV---DFKNNDYNINLNSN---KFVSLVFKI 305
+P+ CGS+LKNKG++ LL+++ +YLPSP +V D ++ + L + V+LVFK
Sbjct: 237 VPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKT 296
Query: 306 FHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVV 365
DPF+G LS +R+YSG +K GD +YNS KE++ R+ RM ++++++A GDIV
Sbjct: 297 MDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVA 356
Query: 366 IVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPS 425
+ LK+++TGDTLC + I LE +E P PVIS++IEP K D+EKL L K +EDP+
Sbjct: 357 VAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIEPKDKGDEEKLSEALGKLAEEDPT 416
Query: 426 LLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQEGKY 485
L + + TG+TILSGMGELHL++ ++R+ +E ++ + PQV Y+E+I+K G++
Sbjct: 417 LRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKAEGHGRH 476
Query: 486 IKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVV 545
KQSGG GQ+G V + +EP L E F F +++GG++P+++IPA+EKG+ + GV+
Sbjct: 477 KKQSGGHGQFGDVWLEVEP--LPRGEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVL 534
Query: 546 LGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSE 605
GYPV+ +KV L +GS+HSVDSSE AFK AA +A ++AL KA +LEPIMKVEV++P E
Sbjct: 535 AGYPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEE 594
Query: 606 FLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGT 656
F+G V+GD++ +RG I + ++ + +PL E+FGY+TDLRS T+G
Sbjct: 595 FVGDVIGDLSSRRGRILGMESRGGGDVVRAEVPLAEMFGYATDLRSLTQGR 645
|
Length = 668 |
| >gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 776 bits (2007), Expect = 0.0
Identities = 270/367 (73%), Positives = 315/367 (85%), Gaps = 1/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+TKV ++ G E +A+D ID APEEK RGITI+T+HVEYE+E +
Sbjct: 16 GTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKR 75
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVFL
Sbjct: 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFL 135
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T I+ GSAL ALEG DD + I +L
Sbjct: 136 NKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEE-WEKKILEL 194
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
+D +DS IPTP R DKPFLMPIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG + T
Sbjct: 195 MDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQ 254
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
KTT+TG+EMF+K LDEG AG+NVG LLR +KRE+VERGQVLAK GSI + FE EVY+L
Sbjct: 255 KTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGSITPHTKFEAEVYVL 314
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SKEEGGRHTPFFNGY+PQFYFRTTDVTG+ +LPE VEMV+PGDN+++ V L++ IA+E G
Sbjct: 315 SKEEGGRHTPFFNGYRPQFYFRTTDVTGVIELPEGVEMVMPGDNVEMTVELIAPIAMEEG 374
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 375 LRFAIRE 381
|
Length = 396 |
| >gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 763 bits (1972), Expect = 0.0
Identities = 275/367 (74%), Positives = 317/367 (86%), Gaps = 1/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+TKV ++ GGE +A+D IDNAPEEK RGITI+TSHVEYE+ N+
Sbjct: 16 GTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANR 75
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVFL
Sbjct: 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFL 135
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T I+ GSAL ALEG DD + I +L
Sbjct: 136 NKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEE-WEAKILEL 194
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
+D +DS IP P R DKPFLMPIEDVFSISGRGTVVTG++ERGIVK G+E+EIVG K+T
Sbjct: 195 MDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQ 254
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
KTT+TG+EMF+K LDEG AG+NVG+LLR KRE+VERGQVLAK GSIK + FE EVY+L
Sbjct: 255 KTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGSIKPHTKFEAEVYVL 314
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SKEEGGRHTPFFNGY+PQFYFRTTDVTG +LPE VEMV+PGDN+K+ V L++ IA+E G
Sbjct: 315 SKEEGGRHTPFFNGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNVKMTVELIAPIAMEEG 374
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 375 LRFAIRE 381
|
Length = 396 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 773 bits (1998), Expect = 0.0
Identities = 324/663 (48%), Positives = 458/663 (69%), Gaps = 25/663 (3%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
FRNIGI AH+DAGKTTTTERILFY+G HKIGEVH G DWM+QE+ERGITITSA+ +
Sbjct: 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATT 69
Query: 68 IFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
+FW+ + INIIDTPGHVDFT+EVERSLRVLDGAV ++ A G+QPQ+ETVW Q+ +
Sbjct: 70 VFWK----GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR 125
Query: 128 YKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFF 187
Y+VP++ FVNKMD+ GAN+ + IK++ +PI IG E+N+ G++D++ K++F
Sbjct: 126 YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYF 185
Query: 188 W---KENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYIN-NNYSINDIKNSIR 243
+ K I K I D L E ++E ++ DE +EKY+ +I +IKN+IR
Sbjct: 186 FNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIR 245
Query: 244 KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNK------ 297
K VL + P++CGS+ KNKG++ LL+++ +YLPSP DV I+ ++ K
Sbjct: 246 KGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVP---AIKGIDPDTEKEIERKA 302
Query: 298 -----FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSK 352
F +L FK+ DPF+G L+F+R+YSG +K G V NS K KE++ R+++M AN++
Sbjct: 303 SDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNR 362
Query: 353 KDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKL 412
++I + GDI +GLK+++TGDTLC ++ LE +E P PVIS+++EP K DQEK+
Sbjct: 363 EEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERMEFPEPVISLAVEPKTKADQEKM 422
Query: 413 LNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYK 472
L K +EDP+ + TG+TI++GMGELHL+IIVDR+ +E ++ + PQV+Y+
Sbjct: 423 GIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQVAYR 482
Query: 473 ESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAI 532
E+I+ V EGK+ KQSGG+GQYGHV IR EP+ + + F +EI GG IP+E+IPA+
Sbjct: 483 ETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPL---EPKGYEFVNEIKGGVIPREYIPAV 539
Query: 533 EKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYIL 592
+KG+ + G + GYPV+ IK L +GS+H VDSSE AFK AA++A K+A KKAN +L
Sbjct: 540 DKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLL 599
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSN 652
EPIMKVEV +P E++G V+GD++ +RGII + N + I + +PL E+FGY+TDLRS
Sbjct: 600 EPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARGNVQKIKAEVPLSEMFGYATDLRSF 659
Query: 653 TKG 655
T+G
Sbjct: 660 TQG 662
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 740 bits (1914), Expect = 0.0
Identities = 294/660 (44%), Positives = 443/660 (67%), Gaps = 19/660 (2%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGI+AH+DAGKTT TERILFY+G HK+GEV GTT+TDWM QEQERGITI SA+ S
Sbjct: 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSC 68
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
W+ + IN+IDTPGH+DFT EVERSLRVLDGAV++ A +G+QPQTETVW Q+ +Y
Sbjct: 69 DWD----NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY 124
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
+P++IF+NKMDR+GA+ + DI+++F LP+ IG E+ +EG+VD+I + +
Sbjct: 125 GIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHF 184
Query: 189 KENS----IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSIND-IKNSIR 243
E + I ++ L + E ++E L+ D+ LE Y+ + ++ +R
Sbjct: 185 SEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLR 244
Query: 244 KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD----FKNNDYNINLNSN--- 296
+ ++P++ GS+LKN GIE LL+++ +YLPSP +V K+N + ++ +
Sbjct: 245 EGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEK 304
Query: 297 KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIN 356
++LVFK+ +DP+ G L+++R+YSG ++ G +YN T +EK+ R+ R+ N +++++
Sbjct: 305 PLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVD 364
Query: 357 DAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLNIL 416
A GDIV + GLKE TGDTL ++ + LE + P PV+S+++EP + D++KL L
Sbjct: 365 RAKAGDIVAVAGLKELETGDTLHDSADPVLLELLTFPEPVVSLAVEPERRGDEQKLAEAL 424
Query: 417 QKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIK 476
+K EDPSL + + TG+TILSGMGELHLE+ ++R+ +E ++ KPQV+Y+E+I+
Sbjct: 425 EKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAYRETIR 484
Query: 477 KIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGI 536
K+ ++ KQ GGKGQ+G V +R+EP LE FIF S+++GG+IP+E IPA+EKGI
Sbjct: 485 KMAEGVYRHKKQFGGKGQFGEVHLRVEP--LERGAGFIFVSKVVGGAIPEELIPAVEKGI 542
Query: 537 MNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIM 596
+ G + GYPV ++V +++G +H VDSSE AFK AA A +A +KAN +LEPIM
Sbjct: 543 REALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIM 602
Query: 597 KVEVNLPSEFLGIVVGDINKKRGIINTIID-HENFKIINSYIPLRELFGYSTDLRSNTKG 655
++E+ +P+E +G V+GD++++RG I + ++ + PL ELFGY+T LRS TKG
Sbjct: 603 ELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLVKAEAPLAELFGYATRLRSMTKG 662
|
Length = 687 |
| >gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 712 bits (1839), Expect = 0.0
Identities = 257/367 (70%), Positives = 307/367 (83%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+TKV +E + + +D+ID APEEKERGITI+T+HVEYE+E +
Sbjct: 16 GTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKR 75
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILLARQVGVP +VVFL
Sbjct: 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFL 135
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL+EYDF G++ ++ GSAL ALEG +I +L
Sbjct: 136 NKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKW---EDAIMEL 192
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
+D +D IPTP R TDKPFLMP+EDVF+I+GRGTVVTG++ERG VK G+E+EIVG K+T
Sbjct: 193 MDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQ 252
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
KT +TG+EMF+K LDEG AG+NVG+LLR V R+EVERGQVLAK GSIK + F+ EVYIL
Sbjct: 253 KTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGSIKPHTKFKAEVYIL 312
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
+KEEGGRHTPFFN Y+PQFYFRTTDVTG +LPE EMV+PGDN+ + V L+ IA+E G
Sbjct: 313 TKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELPEGTEMVMPGDNVTITVELIHPIAMEQG 372
Query: 1015 LRFAIRE 1021
L+FAIRE
Sbjct: 373 LKFAIRE 379
|
Length = 394 |
| >gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 677 bits (1749), Expect = 0.0
Identities = 269/367 (73%), Positives = 312/367 (85%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ G E +A+D IDNAPEEK RGITI+T+HVEYE+ N+
Sbjct: 16 GTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANR 75
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILLARQVGVP IVVFL
Sbjct: 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFL 135
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL+EY F G++T I+ GSAL ALEG I++L
Sbjct: 136 NKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAK---WEAKIEEL 192
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
+D +DS IPTP R DKPFLMP+EDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T
Sbjct: 193 MDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQ 252
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
KTT+TG+EMF+K LDEG AG+NVG+LLR VKRE+VERGQVLAK GSIK + FE EVY+L
Sbjct: 253 KTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKPHTKFEAEVYVL 312
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SKEEGGRHTPFF+GY+PQFYFRTTDVTG LPE VEMV+PGDN+K+ V L+ IA+E G
Sbjct: 313 SKEEGGRHTPFFHGYRPQFYFRTTDVTGAITLPEGVEMVMPGDNVKMVVELIHPIAMEEG 372
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 373 LRFAIRE 379
|
Length = 394 |
| >gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU | Back alignment and domain information |
|---|
Score = 648 bits (1674), Expect = 0.0
Identities = 271/367 (73%), Positives = 312/367 (85%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ G RA+D IDNAPEEK RGITI+T+HVEYE+EN+
Sbjct: 16 GTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENR 75
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVFL
Sbjct: 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFL 135
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL+EYDF G++T I+ GSAL ALEG D + I +L
Sbjct: 136 NKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEG--DAE-WEAKILEL 192
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
+D +D IPTP R TDKPFLMPIEDVFSI+GRGTVVTG++ERGIVK GEE+EIVG K T
Sbjct: 193 MDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTR 252
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
KTT+TG+EMF+K LDEG AG+NVG+LLR +KREE+ERG VLAK GSIK + FE EVY+L
Sbjct: 253 KTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPGSIKPHTKFEAEVYVL 312
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
KEEGGRHTPFF+GY+PQFYFRTTDVTG LPE VEMV+PGDN+K+ V L+S IA+E G
Sbjct: 313 KKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLPEGVEMVMPGDNVKMTVELISPIALEQG 372
Query: 1015 LRFAIRE 1021
+RFAIRE
Sbjct: 373 MRFAIRE 379
|
This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation [Protein synthesis, Translation factors]. Length = 394 |
| >gnl|CDD|177010 CHL00071, tufA, elongation factor Tu | Back alignment and domain information |
|---|
Score = 630 bits (1627), Expect = 0.0
Identities = 252/380 (66%), Positives = 303/380 (79%), Gaps = 14/380 (3%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T + G + + +D ID+APEEK RGITI+T+HVEYE+EN+
Sbjct: 16 GTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENR 75
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV SA DGPMPQT+EHILLA+QVGVPNIVVFL
Sbjct: 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFL 135
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALE--------GKDDNQL 826
NK D V D+ELL+LVE+E+RELL++YDF G++ IV GSALLALE + +N+
Sbjct: 136 NKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKW 195
Query: 827 GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886
I L+D +DS IPTP R TDKPFLM IEDVFSI+GRGTV TG+IERG VK G+ +E
Sbjct: 196 -VDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVE 254
Query: 887 IVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNI 946
IVG ++T TT+TG+EMF+KTLDEGLAG+NVGILLR +++E++ERG VLAK G+I +
Sbjct: 255 IVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGTITPHTK 314
Query: 947 FECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-----PENVEMVLPGDNIKL 1001
FE +VYIL+KEEGGRHTPFF GY+PQFY RTTDVTG + EMV+PGD IK+
Sbjct: 315 FEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSKTEMVMPGDRIKM 374
Query: 1002 NVTLLSSIAIEIGLRFAIRE 1021
V L+ IAIE G+RFAIRE
Sbjct: 375 TVELIYPIAIEKGMRFAIRE 394
|
Length = 409 |
| >gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 631 bits (1628), Expect = 0.0
Identities = 244/369 (66%), Positives = 300/369 (81%), Gaps = 3/369 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+TKV +E + AFD ID APEEK RGITI+T+HVEYE+ +
Sbjct: 65 GTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKR 124
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDG ILV SA DGPMPQT+EHILLARQVGVP++VVFL
Sbjct: 125 HYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFL 184
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL+ Y F G+ I+ GSAL AL+G +D ++G +I KL
Sbjct: 185 NKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTND-EIGKNAILKL 243
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQ-- 892
+D +D IP P R+ DKPFLMPIEDVFSI GRGTV TG++E+G +K GEE+EIVG +
Sbjct: 244 MDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGG 303
Query: 893 TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVY 952
+KTT+TG+EMFKK LD+G AG+NVG+LLR +KRE+V+RGQV+ K GSIK+Y FE E+Y
Sbjct: 304 PLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGSIKTYKKFEAEIY 363
Query: 953 ILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIE 1012
+L+K+EGGRHTPFF+ Y+PQFY RT DVTG +LPE V+MV+PGDN+ L+S + +E
Sbjct: 364 VLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVELPEGVKMVMPGDNVTAVFELISPVPLE 423
Query: 1013 IGLRFAIRE 1021
G RFA+RE
Sbjct: 424 PGQRFALRE 432
|
Length = 447 |
| >gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 525 bits (1353), Expect = e-177
Identities = 234/380 (61%), Positives = 293/380 (77%), Gaps = 14/380 (3%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAALT + + G + +D ID APEE+ RGITI+T+ VEYE+EN+
Sbjct: 85 GTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENR 144
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV S DGPMPQT+EHILLA+QVGVPN+VVFL
Sbjct: 145 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFL 204
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEG--------KDDNQL 826
NK D V D+ELL+LVE+E+RELL+ Y+F G++ I+ GSALLALE + DN+
Sbjct: 205 NKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKW 264
Query: 827 GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886
I +L+D +DS IP P R TD PFL+ +EDVFSI+GRGTV TG++ERG VK GE ++
Sbjct: 265 -VDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVD 323
Query: 887 IVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNI 946
IVG ++T TT+TG+EMF+K LDE LAG+NVG+LLR +++ +++RG VLAK GSI +
Sbjct: 324 IVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTK 383
Query: 947 FECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTG-----ICKLPENVEMVLPGDNIKL 1001
FE VY+L KEEGGRH+PFF GY+PQFY RTTDVTG + E +MV+PGD +K+
Sbjct: 384 FEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKM 443
Query: 1002 NVTLLSSIAIEIGLRFAIRE 1021
V L+ +A E G+RFAIRE
Sbjct: 444 VVELIVPVACEQGMRFAIRE 463
|
Length = 478 |
| >gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis | Back alignment and domain information |
|---|
Score = 427 bits (1101), Expect = e-143
Identities = 142/274 (51%), Positives = 195/274 (71%), Gaps = 8/274 (2%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
NIGIIAH+DAGKTTTTERIL+Y+G HKIGEVH G DWM+QE+ERGITI SA+ + F
Sbjct: 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDWMEQERERGITIQSAATTCF 60
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
W+ + INIIDTPGHVDFTIEVERSLRVLDGAV + A +G+QPQTETVW Q+ +Y
Sbjct: 61 WK----DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVQPQTETVWRQADRYG 116
Query: 130 VPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWK 189
VP++ FVNKMDR GA++ + I++K +P+ IG E+++EG+VD+I K+ +W
Sbjct: 117 VPRIAFVNKMDRTGADFYRVVEQIREKLGANPVPLQLPIGAEDDFEGVVDLIEMKALYWD 176
Query: 190 ENS---IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDIKNSIRKL 245
I +I +D L + E ++ETL+ D+ +EKY+ + +IK +IRK
Sbjct: 177 GELGEKIEETDIPEDLLEEAEEAREELIETLAEVDDELMEKYLEGEEITEEEIKAAIRKG 236
Query: 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279
+ NKI+P++CGS+ KNKG++ LL+++ +YLPSP
Sbjct: 237 TIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members. Length = 270 |
| >gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins | Back alignment and domain information |
|---|
Score = 385 bits (992), Expect = e-128
Identities = 142/191 (74%), Positives = 161/191 (84%), Gaps = 1/191 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+TKV ++ G + + +D ID APEEK RGITI+T+HVEYE+ N+
Sbjct: 6 GTIGHVDHGKTTLTAAITKVLAKKGGAKAKKYDEIDKAPEEKARGITINTAHVEYETANR 65
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREH+LLARQVGVP IVVFL
Sbjct: 66 HYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFL 125
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NKAD V D+ELL+LVEME+RELL++Y FDG++T IV GSAL ALEG D N I +L
Sbjct: 126 NKADMVDDEELLELVEMEVRELLSKYGFDGDDTPIVRGSALKALEGDDPN-KWVDKILEL 184
Query: 835 LDVLDSSIPTP 845
LD LDS IPTP
Sbjct: 185 LDALDSYIPTP 195
|
EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 277 bits (709), Expect = 2e-80
Identities = 196/712 (27%), Positives = 344/712 (48%), Gaps = 107/712 (15%)
Query: 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV 66
+ RNIGI+AH+D GKTT ++ +L +G + E+ D+ +QEQERGITI +A+V
Sbjct: 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISE--ELAGQQLYLDFDEQEQERGITINAANV 75
Query: 67 SIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ 126
S+ E +Y+IN+IDTPGHVDF +V R++R +DGA++++CA G+ PQTETV Q+
Sbjct: 76 SMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQAL 135
Query: 127 KYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSF 186
K V ++F+NK+DR+ I ++K + +E E + II
Sbjct: 136 KENVKPVLFINKVDRL-------INELK-------------LTPQELQERFIKIIT---- 171
Query: 187 FWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIK------N 240
E + +IK + ++ + + + + F Y N S+ +K
Sbjct: 172 ---EVNKLIKAMAPEE------FRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFK 222
Query: 241 SIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPY-------------DVDFKNN 287
I K ++K + S L + +L+ + +LPSP D++ +
Sbjct: 223 DIYKYCKEDKQKELAKKSPLH----QVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVG 278
Query: 288 DYNINLNSNKFVSLVF-KIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILR 346
+N + ++L+ KI D G ++ R+YSG I+ G VY +K K +I ++
Sbjct: 279 KAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGV 338
Query: 347 MFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQ-LENIE-TPIPVISISIEPI 404
+ ++++ G+IV ++GLK++ G+T+C+ ENI E+I+ PV++++IE
Sbjct: 339 YMGPERVEVDEIPAGNIVAVIGLKDAVAGETICTTVENITPFESIKHISEPVVTVAIEAK 398
Query: 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464
D KL+ +L++ KEDP++ + IN TGE ++SGMGELHLEIIV++I ++ + +
Sbjct: 399 NTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDYGLDVET 458
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLE----NKENFIFKSEII 520
S P V Y+E+ VT + + ++ I +EP+ KE I ++
Sbjct: 459 SPPIVVYRET----VTGTSPVV-EGKSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMK 513
Query: 521 GGSIPKEFIPA---------------------IEKGI--MNQINYGVVLGY--------- 548
+ I A + +GI +++ ++ G+
Sbjct: 514 KKERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFREAMRNGPI 573
Query: 549 ---PVIKIKVFLVNGSFH--SVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLP 603
+ +KV L++ H +V A + A+ +A +LEP KV +N+P
Sbjct: 574 AREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVP 633
Query: 604 SEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
+ +G +I +RG I + + I + P+ E+FG++ +R T G
Sbjct: 634 QDMMGAATREIQNRRGQILEMKQEGDMVTIIAKAPVAEMFGFAGAIRGATSG 685
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 6e-78
Identities = 92/190 (48%), Positives = 118/190 (62%), Gaps = 12/190 (6%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
G IGHVDHGKTTLT AL V+ I + +D EE+ERGITI + V +E++ +
Sbjct: 7 GIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSFETKKR 66
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
+D PGH D+ K MI GA+Q DGAILV AV+G MPQTREH+LLA+ +GVP I+VF+
Sbjct: 67 LINIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMPQTREHLLLAKTLGVP-IIVFI 125
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D EL ++VE RELL +Y F GE +V GSAL I +L
Sbjct: 126 NKIDRVDDAELEEVVEEISRELLEKYGFGGETVPVVPGSALTGE-----------GIDEL 174
Query: 835 LDVLDSSIPT 844
L+ LD +P+
Sbjct: 175 LEALDLYLPS 184
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 3e-75
Identities = 105/271 (38%), Positives = 149/271 (54%), Gaps = 35/271 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
NIGI+AHVDAGKTT TE +L+ SG+ ++G V GTT TD M+ E++RGITI SA S
Sbjct: 1 NIGILAHVDAGKTTLTESLLYTSGAIRELGSVDKGTTRTDSMELERQRGITIFSAVASFQ 60
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
WE K +NIIDTPGH+DF EVERSL VLDGA+++I A G+Q QT ++ +K
Sbjct: 61 WEDTK----VNIIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILFRLLRKLN 116
Query: 130 VPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWK 189
+P +IFVNK+DR GA+ +IK+K + DI+ +
Sbjct: 117 IPTIIFVNKIDRAGADLEKVYQEIKEKLS-------------------PDIVPMQKVGLY 157
Query: 190 ENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNY-SINDIKNSIRKLVLK 248
N NID +Q +ET++ ++ LEKY++ ++ N + + K
Sbjct: 158 PNICDTNNIDDEQ-----------IETVAEGNDELLEKYLSGGPLEELELDNELSARIQK 206
Query: 249 NKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279
+ P+ GS+LK GI+ LL I P+
Sbjct: 207 ASLFPVYHGSALKGIGIDELLEGITNLFPTS 237
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family | Back alignment and domain information |
|---|
Score = 225 bits (577), Expect = 4e-67
Identities = 84/272 (30%), Positives = 158/272 (58%), Gaps = 6/272 (2%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
NI ++ H +GKTT E +L+ +G+ ++G V G T++D+ +E++R ++I ++ +
Sbjct: 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGRVEDGNTVSDYDPEEKKRKMSIETSVAPLE 60
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
W +K IN+IDTPG+ DF E +LR +D A+I++ A SG++ TE VW K
Sbjct: 61 WNGHK----INLIDTPGYADFVGETLSALRAVDAALIVVEAQSGVEVGTEKVWEFLDDAK 116
Query: 130 VPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWK 189
+P++IF+NKMDR A+++ + +++ F V+PI IG + + G+VD++++K++ +
Sbjct: 117 LPRIIFINKMDRARADFDKTLAALREAFGRPVVPIQLPIGEGDEFTGVVDLLSEKAYRYD 176
Query: 190 ENS-IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKLVL 247
+ I ++ E +LE ++ DE +EKY+ + +++ +R+ +
Sbjct: 177 PGEPSVEIEIPEELKEKVAEAREELLEAVAETDEELMEKYLEEGELTEEELRAGLRRALR 236
Query: 248 KNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279
I+P+ GS+L G+ LL+++ E PSP
Sbjct: 237 AGLIVPVFFGSALTGIGVRRLLDALVELAPSP 268
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 5e-62
Identities = 113/311 (36%), Positives = 175/311 (56%), Gaps = 48/311 (15%)
Query: 657 IGHVDHGKTTLTAAL--------------TKVSSEIYGGEVRAFDTI-DNAPEEKERGIT 701
IGHVDHGK+TL L + ++ G E F + D EE+ERG+T
Sbjct: 12 IGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVT 71
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVD--GPMPQTREHI 759
I +H ++E++ ++ VDCPGH D++KNMITGA+Q D A+LV +A D G MPQTREH+
Sbjct: 72 IDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHV 131
Query: 760 LLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818
LAR +G+ ++V +NK D V D++ + V+ E+ +LL + ++ + S A
Sbjct: 132 FLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVS---AF 188
Query: 819 EGKDDNQLGTTSIKK------------LLDVLDSSIPTPNRITDKPFLMPIEDVFSISGR 866
EG DN + K LL+ LD ++ P + TDKP +PI+DV+SISG
Sbjct: 189 EG--DN------VVKKSENMPWYNGPTLLEALD-NLKPPEKPTDKPLRIPIQDVYSISGV 239
Query: 867 GTVVTGKIERGIVKNGEEI--EIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSV 924
GTV G++E G++K G+++ G +K+ IEM + L + G+N+G +R V
Sbjct: 240 GTVPVGRVETGVLKVGDKVVFMPAGVVGEVKS----IEMHHEELPQAEPGDNIGFNVRGV 295
Query: 925 KREEVERGQVL 935
+++++RG V
Sbjct: 296 GKKDIKRGDVC 306
|
Length = 425 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 6e-60
Identities = 115/375 (30%), Positives = 184/375 (49%), Gaps = 43/375 (11%)
Query: 657 IGHVDHGKTTLTAAL---------------TKVSSEIYGGEVRAFDTI-DNAPEEKERGI 700
IGHVD GK+TL L K + E+ G E F + D EE+ERG+
Sbjct: 13 IGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKEL-GKESFKFAWVLDKTKEERERGV 71
Query: 701 TISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMP 753
TI +H ++E++ ++ +D PGH D++KNMITGA+Q D A+LV A DG
Sbjct: 72 TIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGG 131
Query: 754 QTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIG 812
QTREH LAR +G+ ++V +NK D V D+E + + E+ +LL ++ ++ +
Sbjct: 132 QTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPI 191
Query: 813 SALLALEGKDDNQLGTTS----IKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT 868
S +G + + LL+ LD + P R DKP +PI+DV+SISG GT
Sbjct: 192 S---GFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERPLDKPLRLPIQDVYSISGIGT 247
Query: 869 VVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREE 928
V G++E G++K G+++ + + IEM + + + G+NVG +R V++ +
Sbjct: 248 VPVGRVESGVIKPGQKVTF--MPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKND 305
Query: 929 VERGQVLAK-IGSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP 987
+ RG V+ F ++ +L +GY P + T V C++
Sbjct: 306 IRRGDVIGHSDNPPTVSPEFTAQIIVL-----WHPGIITSGYTPVLHAHTAQVA--CRIA 358
Query: 988 ENVEMVLPGDNIKLN 1002
E + + P KL
Sbjct: 359 ELLSKLDPRTGKKLE 373
|
Length = 428 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 4e-59
Identities = 69/185 (37%), Positives = 104/185 (56%), Gaps = 18/185 (9%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGII HVD GKTT T+ +L+ +G+ K E G + D +++E+ERGITI A+VS
Sbjct: 4 RNIGIIGHVDHGKTTLTDALLYVTGAISK--ESAKGARVLDKLKEERERGITIKIAAVSF 61
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
+ K +INIIDTPGHVDFT E+ R DGA++++ A G+ PQT ++
Sbjct: 62 ETK----KRLINIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMPQTREHLLLAKTL 117
Query: 129 KVPKMIFVNKMDRI-GANYNNCIIDIKKKF---------NCIVLPIN--FNIGIEENYEG 176
VP ++F+NK+DR+ A + +I ++ V+P + GI+E E
Sbjct: 118 GVPIIVFINKIDRVDDAELEEVVEEISRELLEKYGFGGETVPVVPGSALTGEGIDELLEA 177
Query: 177 IVDII 181
+ +
Sbjct: 178 LDLYL 182
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|238715 cd01434, EFG_mtEFG1_IV, EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 7e-55
Identities = 63/118 (53%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Query: 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIP 530
Y+E+I K E ++ KQSGG GQYGHVV+ IEP L F F ++I+GG+IPKE+IP
Sbjct: 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEP--LPRGSGFEFVNKIVGGAIPKEYIP 58
Query: 531 AIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588
A+EKG + G + GYPV+ +KV L +GS+H VDSSE AFK AA +A K+A KKA
Sbjct: 59 AVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKAK 116
|
Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG2s are not present in this group. Length = 116 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 5e-54
Identities = 79/194 (40%), Positives = 103/194 (53%), Gaps = 16/194 (8%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
G IGHVDHGKTTLT +L + I R +D EE+ERGITI T VE+E +
Sbjct: 3 GVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPKR 62
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
+D PGH D+ K + G AQ DGA+LV A +G PQTREH+ +A G I+V +
Sbjct: 63 RINFIDTPGHEDFSKETVRGLAQADGALLVVDANEGVEPQTREHLNIALA-GGLPIIVAV 121
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDF---DGENTKIVIGSALLALEGKDDNQLGTTSI 831
NK D V +E D V EI+ELL F G++ I+ SAL I
Sbjct: 122 NKIDRV-GEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPISALTGE-----------GI 169
Query: 832 KKLLDVLDSSIPTP 845
++LLD + +P P
Sbjct: 170 EELLDAIVEHLPPP 183
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 1e-52
Identities = 106/305 (34%), Positives = 167/305 (54%), Gaps = 37/305 (12%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFD---------------TIDNAPEEKERGIT 701
IGHVDHGK+T L I + F+ +D EE+ERG+T
Sbjct: 13 IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVT 72
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP---MPQTREH 758
I +H ++E++ VDCPGH D+IKNMITGA+Q D A+LV + DG PQTREH
Sbjct: 73 IDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREH 132
Query: 759 ILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLA 817
LAR +G+ ++V +NK D V D+E + ++ E+ L+ + ++ + + SA
Sbjct: 133 AFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAW-- 190
Query: 818 LEGKDDNQLGTTSI------KKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVT 871
DN + + K LL+ LD ++ P + TDKP +PI+DV+SI+G GTV
Sbjct: 191 ---NGDNVIKKSENTPWYKGKTLLEALD-ALEPPEKPTDKPLRIPIQDVYSITGVGTVPV 246
Query: 872 GKIERGIVKNGEEI--EIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEV 929
G++E G++K G+++ E G +K+ IEM + +++ G+N+G +R V ++++
Sbjct: 247 GRVETGVLKPGDKVVFEPAGVSGEVKS----IEMHHEQIEQAEPGDNIGFNVRGVSKKDI 302
Query: 930 ERGQV 934
RG V
Sbjct: 303 RRGDV 307
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels [Protein synthesis, Translation factors]. Length = 426 |
| >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 3e-50
Identities = 97/356 (27%), Positives = 158/356 (44%), Gaps = 44/356 (12%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
T GHVDHGKTTL ALT +++ D PEEK+RG+TI + +
Sbjct: 4 ATAGHVDHGKTTLLKALTGIAA-------------DRLPEEKKRGMTIDLGFAYFPLPDY 50
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
+D PGH +I N I G +D A+LV A +G M QT EH+ + +G+P+ +V +
Sbjct: 51 RLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVI 110
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
KAD V ++E + EM ++++L Y F +N KI SA +G + + +K L
Sbjct: 111 TKADRV-NEEEIKRTEMFMKQILNSYIFL-KNAKIFKTSAKTG-QGIGELK---KELKNL 164
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
L+ LD + KP M I+ F + G GTVVTG G VK G+ + ++ +
Sbjct: 165 LESLD------IKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEV 218
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
+ + I+ + ++ AG+ + + L V+ E ++RG ++ K + +
Sbjct: 219 R--VKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDPKLRVVVKFIA--- 273
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENV-------EMVLPGDNIKLNV 1003
P + TG L + ++ KL +
Sbjct: 274 -------EVPLLELQPYHIAHGMSVTTGKISLLDKGIALLTLDAPLILAKGDKLVL 322
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581 |
| >gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 2e-49
Identities = 109/353 (30%), Positives = 171/353 (48%), Gaps = 42/353 (11%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GT GH+DHGKTTL ALT ++ PEEK+RGITI + E+
Sbjct: 4 GTAGHIDHGKTTLLKALTGGVTDR-------------LPEEKKRGITIDLGFYYRKLEDG 50
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
+D PGH D+I N++ G +D A+LV +A +G M QT EH+L+ +G+ N ++ L
Sbjct: 51 VMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVL 110
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
KAD V + +E +I+++L + N KI SA G ++ + + L
Sbjct: 111 TKADRVDEAR----IEQKIKQILADLSL--ANAKIFKTSAKTG-RGIEELK---NELIDL 160
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
L+ R KPF + I+ F++ G GTVVTG + G VK G+++ + + +
Sbjct: 161 LE-------EIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEV 213
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
+ + I+ ++E AG+ VG+ L+ V++EE+ERG L K ++ E+ I
Sbjct: 214 R--VRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEID 271
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTG-ICKLPENVEMVL-----PGDNIKL 1001
+ G + VTG I L +N E+ L GDN +L
Sbjct: 272 PLFK----KTLKQGQPVHIHVGLRSVTGRIVPLEKNAELNLVKPIALGDNDRL 320
|
Length = 447 |
| >gnl|CDD|239668 cd03697, EFTU_II, EFTU_II: Elongation factor Tu domain II | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 4e-49
Identities = 66/87 (75%), Positives = 78/87 (89%)
Query: 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGL 912
FLMPIEDVFSI GRGTVVTG+IERG +K G+E+EIVG+ +T+KTT+TGIEMF+KTLDE
Sbjct: 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAE 60
Query: 913 AGENVGILLRSVKREEVERGQVLAKIG 939
AG+NVG+LLR VKRE+VERG VLAK G
Sbjct: 61 AGDNVGVLLRGVKREDVERGMVLAKPG 87
|
Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher affinity for GDP than for GTP. Length = 87 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 4e-46
Identities = 129/480 (26%), Positives = 233/480 (48%), Gaps = 58/480 (12%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH------HGTTITDWMQQEQERGITIT 62
R II+H DAGKTT TE++L + G+ + G V H + DWM+ E++RGI++T
Sbjct: 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKS--DWMEIEKQRGISVT 70
Query: 63 SASVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE 119
S+ V +F Y ++N++DTPGH DF+ + R+L +D AV++I A+ GI+PQT
Sbjct: 71 SS-------VMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL 123
Query: 120 TVWFQSQKYK-VPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIV 178
+ F+ + + +P F+NK+DR G + + +I+++ PI + IG+ ++++G+
Sbjct: 124 KL-FEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPITWPIGMGKDFKGVY 182
Query: 179 DIINK-------KSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN 231
+ N + + I+K +D +L A E + E L E N
Sbjct: 183 HLYNDEVELYESGHTDQERRADIVKGLDNPELDA--LLGEDLAEQLREELELVQGAG--N 238
Query: 232 NYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNI 291
+ + L ++ P+ GS+L N G++ L+++ ++ PSP + +
Sbjct: 239 EFD--------LEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQ--ADTREV 288
Query: 292 NLNSNKFVSLVFKI--FHDP-FLGSLSFIRIYSG-FIKVGDLVYNSTKKVKEKIFRILRM 347
+KF VFKI DP ++F+R+ SG F + + + T K K+ L
Sbjct: 289 EPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGK-DVKLSDALTF 347
Query: 348 FANSKKDINDAHFGDIVVIVGLKESST---GDTLCSLSENIQLENIETPIPVI--SISIE 402
A ++ + +A+ GD I+GL T GDT E ++ I P + + ++
Sbjct: 348 MAQDRETVEEAYAGD---IIGLHNHGTIQIGDTFTE-GEKLKFTGIPNFAPELFRRVRLK 403
Query: 403 PIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKT 462
K Q++L L++ +E + + + IL +G+L E++ R+ E N++
Sbjct: 404 DPLK--QKQLKKGLEQLAEEGAVQVFK-PLDGNDLILGAVGQLQFEVVQARLKNEYNVEA 460
|
Length = 528 |
| >gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 3e-45
Identities = 102/305 (33%), Positives = 155/305 (50%), Gaps = 31/305 (10%)
Query: 657 IGHVDHGKTTLTAALT---------------KVSSEIYGGEVRAFDTIDNAPEEKERGIT 701
IGHVD GK+T T L K ++E+ G + +D E+ERGIT
Sbjct: 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGIT 72
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP-------Q 754
I + ++E+ ++ +D PGH D+IKNMITG +Q D AILV ++ G Q
Sbjct: 73 IDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQ 132
Query: 755 TREHILLARQVGVPNIVVFLNKAD---CVQDKELLDLVEMEIRELLTEYDFDGENTKIVI 811
TREH LLA +GV ++V +NK D +E D ++ E+ L + ++ E +
Sbjct: 133 TREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIP 192
Query: 812 GSALLA--LEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTV 869
S + K DN LL+ LD+ P P R DKP +P++DV+ I G GTV
Sbjct: 193 ISGWQGDNMIEKSDNMPWYKG-PTLLEALDTLEP-PKRPVDKPLRLPLQDVYKIGGIGTV 250
Query: 870 VTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEV 929
G++E GI+K G + T T + +EM + L E + G+NVG +++V +++
Sbjct: 251 PVGRVETGILKPGMVVTFAPSGVT--TEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDI 308
Query: 930 ERGQV 934
+RG V
Sbjct: 309 KRGYV 313
|
Length = 446 |
| >gnl|CDD|239678 cd03707, EFTU_III, Domain III of elongation factor (EF) Tu | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 6e-45
Identities = 55/80 (68%), Positives = 65/80 (81%)
Query: 942 KSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKL 1001
K + FE EVY+L+KEEGGRHTPFF+GY+PQFY RTTDVTG LPE EMV+PGDN+K+
Sbjct: 1 KPHTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPEGTEMVMPGDNVKM 60
Query: 1002 NVTLLSSIAIEIGLRFAIRE 1021
V L+ IA+E GLRFAIRE
Sbjct: 61 TVELIHPIALEKGLRFAIRE 80
|
Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix and T stem of tRNA respectively. Length = 90 |
| >gnl|CDD|214887 smart00889, EFG_IV, Elongation factor G, domain IV | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 7e-45
Identities = 64/122 (52%), Positives = 83/122 (68%), Gaps = 3/122 (2%)
Query: 468 QVSYKESI-KKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPK 526
QV+Y+E+I K + EGK+ KQSGG GQY V++ +EP LE F F I+GG IPK
Sbjct: 1 QVAYRETITKPVKEAEGKHKKQSGGDGQYARVILEVEP--LERGSGFEFDDTIVGGVIPK 58
Query: 527 EFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKK 586
E+IPA+EKG + G + GYPV+ +KV L++GS+H VDSSE AFK AA A K+AL K
Sbjct: 59 EYIPAVEKGFREALEEGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKPAARRAFKEALLK 118
Query: 587 AN 588
A
Sbjct: 119 AG 120
|
Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. Length = 120 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 1e-44
Identities = 129/459 (28%), Positives = 229/459 (49%), Gaps = 85/459 (18%)
Query: 266 EFLLNSICEYLPSP-----Y--------DVDFKNNDYNINLNSN-KFVSLVFKIFHDPFL 311
E +L+ + ++LP+P Y D++ + +N + N V +V I DP
Sbjct: 245 EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHA 304
Query: 312 GSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKE 371
G ++ R++SG ++ G VY K K ++ ++ ++++ + G+I + GLK+
Sbjct: 305 GEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKD 364
Query: 372 SSTGDTLCSLSENIQLENIE-TPIPVISISIEPIFKN--DQEKLLNILQKFCKEDPSLLL 428
+ G+T+ S+ + E+++ PV++++IE KN D KL+ +L++ KEDP+L++
Sbjct: 365 ARAGETVVSVEDMTPFESLKHISEPVVTVAIEA--KNPKDLPKLIEVLRQLAKEDPTLVV 422
Query: 429 SINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKK---IVTQEGKY 485
IN TGE +LSGMGELHLE+I RI ++ I+ S+P V Y+E+++ +V EGK
Sbjct: 423 KINEETGEHLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVV--EGK- 479
Query: 486 IKQSGGKGQYGH--VVIRIEPISLE---------------NKENFIFKSEIIGGSIPKEF 528
S K H I +EP+ E KE I + ++I + K+
Sbjct: 480 ---SPNK----HNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEAGMDKDE 532
Query: 529 ---IPAIE---------KGI--MNQINYGVVLGY------------PVIKIKVFLVNGSF 562
+ AI KGI +N++ ++ G+ PV +KV L +
Sbjct: 533 AKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKL 592
Query: 563 HSVDSSEYAFKNAAAI------ALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINK 616
H D+ + A + A+ A+ A +LEPI KV++N+P +++G V +I
Sbjct: 593 HE-DA---IHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQG 648
Query: 617 KRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
+RG I + + II + P+ E+FG++ ++RS T+G
Sbjct: 649 RRGKILDMEQEGDMAIIEAEAPVAEMFGFAGEIRSATEG 687
|
Length = 731 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 2e-43
Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 20/186 (10%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G+I HVD GKTT T +L+ +G+ + G T D +++E+ERGITI + V
Sbjct: 1 NVGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRK--ETFLDTLKEERERGITIKTGVVEFE 58
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
W K IN IDTPGH DF+ E R L DGA++++ A+ G++PQT +
Sbjct: 59 WP----KRRINFIDTPGHEDFSKETVRGLAQADGALLVVDANEGVEPQTREHLNIALAGG 114
Query: 130 VPKMIFVNKMDRIG-ANYNNCIIDIKKKFNCIVLPINF-------------NIGIEENYE 175
+P ++ VNK+DR+G +++ + +IK+ I GIEE +
Sbjct: 115 LPIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPISALTGEGIEELLD 174
Query: 176 GIVDII 181
IV+ +
Sbjct: 175 AIVEHL 180
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 3e-42
Identities = 80/283 (28%), Positives = 151/283 (53%), Gaps = 29/283 (10%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH----HGTTITDWMQQEQERGITITSA 64
R II+H DAGKTT TE++L + G+ + G V +DWM+ E++RGI++TS+
Sbjct: 3 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGAVKARKSRKHATSDWMEIEKQRGISVTSS 62
Query: 65 SVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
V +F+Y +IN++DTPGH DF+ + R+L +D AV++I A+ G++PQT +
Sbjct: 63 -------VMQFEYKGCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKL 115
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII 181
+ + +P + F+NK+DR G + + +I+ + P+ + IG+ ++++G+ D
Sbjct: 116 FEVCRLRGIPIITFINKLDREGRDPLELLDEIENELGIDCAPMTWPIGMGKDFKGVYDRY 175
Query: 182 NKKSFFWKENS-----IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSIN 236
+K+ + ++ + + D + E + E L +E L + +
Sbjct: 176 DKEIYLYERGAGGAIKAPEETKGLDDPKLDELLGEDLAEQLR--EELELVEGAGPEFD-- 231
Query: 237 DIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279
++L L ++ P+ GS+L N G++ LL++ + P+P
Sbjct: 232 ------KELFLAGELTPVFFGSALNNFGVQELLDAFVKLAPAP 268
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 5e-42
Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 11/168 (6%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSG--SSHKIGEVHHGTTITDWMQQEQERGITITSASV 66
RNI IIAHVD GKTT ++ +L +G S G+ D + EQERGITI S+++
Sbjct: 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKAR----YLDTREDEQERGITIKSSAI 56
Query: 67 SIFWEVNKFK-----YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
S+++E + K Y+IN+ID+PGHVDF+ EV +LR+ DGA++++ A G+ QTETV
Sbjct: 57 SLYFEYEEEKMDGNDYLINLIDSPGHVDFSSEVTAALRLTDGALVVVDAVEGVCVQTETV 116
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIG 169
Q+ + +V ++ +NK+DR+ + ++ IV +N I
Sbjct: 117 LRQALEERVKPVLVINKIDRLILELKLSPEEAYQRLLRIVEDVNAIIE 164
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 3e-41
Identities = 118/488 (24%), Positives = 224/488 (45%), Gaps = 58/488 (11%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV------HHGTTITDWMQQEQERGITIT 62
R II+H DAGKTT TE++L Y G+ G V H + DWM+ E++RGI+IT
Sbjct: 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKS--DWMEMEKQRGISIT 69
Query: 63 SASVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE 119
++ V +F Y ++N++DTPGH DF+ + R+L +D +++I A+ G++ +T
Sbjct: 70 TS-------VMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTR 122
Query: 120 TVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVD 179
+ ++ P F+NK+DR + + +++ + PI + IG + ++G+
Sbjct: 123 KLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPITWPIGCGKLFKGVYH 182
Query: 180 IINKKSFFW-------KENSIIIKNIDKDQLSAF---DYYNELMLETLSNNDEFFLEKYI 229
++ +++ + + +K ++ L + D +L DE L +
Sbjct: 183 LLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQL-------RDELELVEGA 235
Query: 230 NNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDY 289
+N + ++ P+ G++L N G++ L+ + ++ P P ++
Sbjct: 236 SNEFD--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQ--SDTR 285
Query: 290 NINLNSNKFVSLVFKI--FHDP-FLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILR 346
+ KF VFKI DP ++F+R+ SG + G + + I L
Sbjct: 286 TVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALT 345
Query: 347 MFANSKKDINDAHFGDIVVIVGLKESST---GDTLCSLSENIQLENIETPIPVISISIEP 403
A ++ + +A+ GD I+GL T GDT E I+ I P + I
Sbjct: 346 FMAGDREHVEEAYAGD---IIGLHNHGTIQIGDTFTQ-GEKIKFTGIPNFAPELFRRIRL 401
Query: 404 IFKNDQEKLLNILQKFCKEDP-SLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKT 462
Q++LL L + +E + ++NN + I+ +G L +++V R+ +E N++
Sbjct: 402 KDPLKQKQLLKGLVQLSEEGAVQVFRPLDNN--DLIVGAVGVLQFDVVVYRLKEEYNVEA 459
Query: 463 KISKPQVS 470
+ V+
Sbjct: 460 RYEPVNVA 467
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|202760 pfam03764, EFG_IV, Elongation factor G, domain IV | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 5e-40
Identities = 59/123 (47%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 467 PQVSYKESIKKIV-TQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIP 525
PQV+Y+E+I K V + K KQSGG GQY V++RIEP F E GG P
Sbjct: 1 PQVAYRETIGKDVKERAYKLKKQSGGDGQYAKVILRIEP---LPGGGNEFVDETKGGQYP 57
Query: 526 KEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALK 585
EF PA+EKG + G + G PV +KV L +GS+H VDSSE AF AA A K+AL
Sbjct: 58 NEFKPAVEKGFQEAMKEGPLAGEPVRDVKVTLTDGSYHEVDSSEAAFIPAARRAFKEALL 117
Query: 586 KAN 588
KA
Sbjct: 118 KAG 120
|
This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. Length = 120 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 8e-40
Identities = 66/163 (40%), Positives = 92/163 (56%), Gaps = 19/163 (11%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITI--STSHVEYESE 712
GT GH+DHGKTTL ALT +T D PEEK+RGITI ++++
Sbjct: 3 GTAGHIDHGKTTLIKALT------------GIET-DRLPEEKKRGITIDLGFAYLDLPD- 48
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
K +D PGH ++KNM+ GA +D +LV +A +G MPQTREH+ + +G+ +V
Sbjct: 49 GKRLGFIDVPGHEKFVKNMLAGAGGIDAVLLVVAADEGIMPQTREHLEILELLGIKKGLV 108
Query: 773 FLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSAL 815
L KAD V D++ L+LVE EI ELL + I S++
Sbjct: 109 VLTKADLV-DEDRLELVEEEILELLAGTFL--ADAPIFPVSSV 148
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 3e-39
Identities = 112/338 (33%), Positives = 166/338 (49%), Gaps = 50/338 (14%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVR---------AFDTIDNAPE-EKERGITIST 704
G +GHVDHGKTTLT ALT V ++ + E++ A I PE + T
Sbjct: 8 GMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEP 67
Query: 705 SHVEYESENKHY---AHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHIL 760
SE + + VD PGH + M++GAA MDGA+LV +A + P PQTREH++
Sbjct: 68 VCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM 127
Query: 761 LARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEG 820
+G+ NIV+ NK D V ++ L+ E EI+E + EN I+ SAL
Sbjct: 128 ALEIIGIKNIVIVQNKIDLVSKEKALENYE-EIKEFVKGT--IAENAPIIPVSAL----- 179
Query: 821 KDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT--------VVTG 872
+ N I LL+ ++ IPTP R DKP LM + F ++ GT V+ G
Sbjct: 180 HNAN------IDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGG 233
Query: 873 KIERGIVKNGEEIEIV-GYK---------QTIKTTITGIEMFKKTLDEGLAGENVGI--- 919
+ +G +K G+EIEI G K + I T IT + ++E G VG+
Sbjct: 234 SLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTK 293
Query: 920 LLRSVKREEVERGQVLAKIGSI-KSYNIFECEVYILSK 956
L ++ + + GQV+ K G++ + E EV++L +
Sbjct: 294 LDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLER 331
|
This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 1e-38
Identities = 63/141 (44%), Positives = 93/141 (65%), Gaps = 6/141 (4%)
Query: 3 NKVLYFRNIGIIAHVDAGKTTTTERILFYSG--SSHKIGEVHHGTTITDWMQQEQERGIT 60
RNIGIIAH+D GKTT ++ +L +G S GE D+ ++EQ RGIT
Sbjct: 15 KNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQ----LALDFDEEEQARGIT 70
Query: 61 ITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET 120
I +A+VS+ E +Y+IN+IDTPGHVDF +V R++R +DGA++++ A G+ PQTET
Sbjct: 71 IKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET 130
Query: 121 VWFQSQKYKVPKMIFVNKMDR 141
V Q+ + +V ++F+NK+DR
Sbjct: 131 VLRQALRERVKPVLFINKVDR 151
|
Length = 731 |
| >gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 7e-38
Identities = 119/423 (28%), Positives = 200/423 (47%), Gaps = 87/423 (20%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV------HHGTTITDWMQQEQERGITIT 62
R II+H DAGKTT TE++L + G+ + G V H T +DWM+ E++RGI++T
Sbjct: 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHAT--SDWMEMEKQRGISVT 68
Query: 63 SASVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE 119
S+ V +F Y +IN++DTPGH DF+ + R+L +D A+++I A+ G++PQT
Sbjct: 69 SS-------VMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTR 121
Query: 120 TVWFQSQKYKV------PKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEEN 173
+ +V P F+NK+DR G + +I++ PI + IG+ +
Sbjct: 122 KL------MEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPITWPIGMGKR 175
Query: 174 YEGIVDIINKKSFFWK-------ENSIIIKNIDKDQLSAF---DYYNELM-----LETLS 218
++G+ D+ N + ++ + IIK +D +L D +L ++ S
Sbjct: 176 FKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGAS 235
Query: 219 NNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPS 278
N EF LE + L ++ P+ GS+L N G++ L++ E+ P+
Sbjct: 236 N--EFDLEAF------------------LAGELTPVFFGSALNNFGVQEFLDAFVEWAPA 275
Query: 279 PYDVDFKNNDYNINLNSNKFVSLVFKI-------FHDPFLGSLSFIRIYSG-FIKVGDLV 330
P + ++ + KF VFKI D ++F+R+ SG F K +
Sbjct: 276 P--QPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRD----RIAFVRVCSGKFEKGMKVR 329
Query: 331 YNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESST---GDTLCSLSENIQL 387
+ T K +I L A ++ + +A+ GD I+GL T GDT E ++
Sbjct: 330 HVRTGK-DVRISNALTFMAQDREHVEEAYAGD---IIGLHNHGTIQIGDTFTQ-GEKLKF 384
Query: 388 ENI 390
I
Sbjct: 385 TGI 387
|
Length = 526 |
| >gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein family | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 5e-37
Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 27/185 (14%)
Query: 657 IGHVDHGKTTLT---------------AALTKVSSEIYGGEVRAFDTI-DNAPEEKERGI 700
IGHVD GK+TLT K + E+ G E + + D EE+ERG+
Sbjct: 5 IGHVDAGKSTLTGHLLYKLGGVDKRTIEKYEKEAKEM-GKESFKYAWVLDKLKEERERGV 63
Query: 701 TISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMP 753
TI ++E+E + +D PGH D++KNMITGA+Q D A+LV SA G
Sbjct: 64 TIDVGLAKFETEKYRFTIIDAPGHRDFVKNMITGASQADVAVLVVSARKGEFEAGFEKGG 123
Query: 754 QTREHILLARQVGVPNIVVFLNKADCVQ---DKELLDLVEMEIRELLTEYDFDGENTKIV 810
QTREH LLAR +GV ++V +NK D V +E D ++ ++ L + ++ ++ +
Sbjct: 124 QTREHALLARTLGVKQLIVAVNKMDDVTVNWSQERYDEIKKKVSPFLKKVGYNPKDVPFI 183
Query: 811 IGSAL 815
S
Sbjct: 184 PISGF 188
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 219 |
| >gnl|CDD|235194 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-36
Identities = 107/339 (31%), Positives = 151/339 (44%), Gaps = 85/339 (25%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITI------------ 702
G +GHVDHGKTTL ALT V + D EE +RGITI
Sbjct: 13 GMVGHVDHGKTTLVQALTGVWT-------------DRHSEELKRGITIRLGYADATIRKC 59
Query: 703 -STSHVEYESENKHYAH-------------VDCPGHADYIKNMITGAAQMDGAILVCSAV 748
E + + VD PGH + M++GAA MDGAILV +A
Sbjct: 60 PDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAAN 119
Query: 749 DG-PMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG--- 804
+ P PQT+EH++ +G+ NIV+ NK D V + L+ E +I+E + G
Sbjct: 120 EPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYE-QIKEFV-----KGTVA 173
Query: 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSIS 864
EN I+ SAL N I L++ ++ IPTP R DKP M + F ++
Sbjct: 174 ENAPIIPVSAL-----HKVN------IDALIEAIEEEIPTPERDLDKPPRMYVARSFDVN 222
Query: 865 GRGT--------VVTGKIERGIVKNGEEIEIV-GYK---------QTIKTTITGIEMFKK 906
GT V+ G + +G++K G+EIEI G K + I T I + +
Sbjct: 223 KPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGE 282
Query: 907 TLDE----GLAGENVGILLR-SVKREEVERGQVLAKIGS 940
++E GL G VG L S+ + + G V K G+
Sbjct: 283 KVEEARPGGLVG--VGTKLDPSLTKADALAGSVAGKPGT 319
|
Length = 411 |
| >gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 5e-36
Identities = 118/416 (28%), Positives = 188/416 (45%), Gaps = 71/416 (17%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEY----- 709
G GHVDHGK+TL L + G R++ +D E ERG++ S Y
Sbjct: 121 GVAGHVDHGKSTLVGVLVTGRLDDGDGATRSY--LDVQKHEVERGLSADISLRVYGFDDG 178
Query: 710 ------------------ESENKHYAHVDCPGHADYIKNMITG--AAQMDGAILVCSAVD 749
+ +K + VD GH +++ I G ++D +LV +A D
Sbjct: 179 KVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADD 238
Query: 750 GPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809
G T+EH+ +A + +P IVV + K D V D +VE EI LL
Sbjct: 239 GVTKMTKEHLGIALAMELPVIVV-VTKIDMVPDDRFQGVVE-EISALLK----------- 285
Query: 810 VIGSALLALEGKDDNQLGTTSIK----------------KLLDVLD---SSIPTPNRITD 850
+G L ++ DD L ++K + LD+LD +P R D
Sbjct: 286 RVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKRRRWDD 345
Query: 851 K-PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYK--QTIKTTITGIEMFKKT 907
+ PFLM I+ ++S++G GTVV+G ++ GI+ G+ + + +K + + + IEM
Sbjct: 346 EGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYR 405
Query: 908 LDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRH-TPFF 966
+D AG +GI L+ V++EE+ERG VL+ K+ F+ EV +L RH T
Sbjct: 406 VDSAKAGSIIGIALKGVEKEELERGMVLSAGADPKAVREFDAEVLVL------RHPTTIR 459
Query: 967 NGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLL-SSIAIEIGLRFAIRE 1021
GY+P F++ T + + ++PGD + + +E G +F RE
Sbjct: 460 AGYEPVFHYETIREAVYFE-EIDKGFLMPGDRGVVRMRFKYRPHHVEEGQKFVFRE 514
|
Length = 527 |
| >gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 5e-35
Identities = 86/289 (29%), Positives = 137/289 (47%), Gaps = 52/289 (17%)
Query: 656 TIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH 715
T GHVDHGKTTL A+T V++ D PEEK+RG+TI
Sbjct: 5 TAGHVDHGKTTLLQAITGVNA-------------DRLPEEKKRGMTIDLG---------- 41
Query: 716 YAH-----------VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQ 764
YA+ +D PGH ++ NM+ G +D A+LV + DG M QTREH+ + +
Sbjct: 42 YAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQL 101
Query: 765 VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN 824
G P + V L KAD V D+ + V +++ +L EY F K+ + + A EG
Sbjct: 102 TGNPMLTVALTKADRV-DEARIAEVRRQVKAVLREYGFAE--AKLFVTA---ATEG---- 151
Query: 825 QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEE 884
I L + L +P F + I+ F++ G G VVTG G VK G+
Sbjct: 152 ----RGIDALREHL-LQLPEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDT 206
Query: 885 IEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGI-LLRSVKREEVERG 932
+ + G + ++ + G+ + ++ AG+ + + + ++E++ RG
Sbjct: 207 LWLTGVNKPMR--VRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRG 253
|
Length = 614 |
| >gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-34
Identities = 100/310 (32%), Positives = 157/310 (50%), Gaps = 41/310 (13%)
Query: 657 IGHVDHGKTTLTAALT---------------KVSSEIYGGEVRAFDTIDNAPEEKERGIT 701
IGHVD GK+T T L K ++E+ + +D E+ERGIT
Sbjct: 13 IGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIT 72
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP-------Q 754
I + ++E+ + +D PGH D+IKNMITG +Q D A+L+ + G Q
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 755 TREHILLARQVGVPNIVVFLNKADCVQ---DKELLDLVEMEIRELLTEYDFDGENTKIVI 811
TREH LLA +GV ++ NK D K D + E+ L + ++ + V
Sbjct: 133 TREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV- 191
Query: 812 GSALLALEGKDDNQLG-TTSIK-----KLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG 865
+ EG DN + +T++ LL+ LD I P R +DKP +P++DV+ I G
Sbjct: 192 --PISGFEG--DNMIERSTNLDWYKGPTLLEALD-QINEPKRPSDKPLRLPLQDVYKIGG 246
Query: 866 RGTVVTGKIERGIVKNGEEIEIVGYKQT-IKTTITGIEMFKKTLDEGLAGENVGILLRSV 924
GTV G++E G++K G +V + T + T + +EM ++L E L G+NVG +++V
Sbjct: 247 IGTVPVGRVETGVIKPG---MVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNV 303
Query: 925 KREEVERGQV 934
++++RG V
Sbjct: 304 AVKDLKRGYV 313
|
Length = 447 |
| >gnl|CDD|227582 COG5257, GCD11, Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-33
Identities = 102/351 (29%), Positives = 160/351 (45%), Gaps = 76/351 (21%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITI------------ 702
G +GHVDHGKTTLT AL+ V + D EE +RGITI
Sbjct: 14 GMVGHVDHGKTTLTKALSGVWT-------------DRHSEELKRGITIKLGYADAKIYKC 60
Query: 703 ------STSHVEYESEN--------KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAV 748
E + N + + VD PGH + M++GAA MDGA+LV +A
Sbjct: 61 PECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAAN 120
Query: 749 DG-PMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807
+ P PQTREH++ +G+ NI++ NK D V + L+ E +I+E + EN
Sbjct: 121 EPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYE-QIKEFVKGT--VAENA 177
Query: 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRG 867
I+ SA +I L++ ++ IPTP R DKP M + F ++ G
Sbjct: 178 PIIPISAQHK-----------ANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPG 226
Query: 868 T--------VVTGKIERGIVKNGEEIEIV-GYK---------QTIKTTITGIEMFKKTLD 909
T V+ G + +G+++ G+EIEI G + I T I ++ + ++
Sbjct: 227 TPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVE 286
Query: 910 EGLAGENVGI---LLRSVKREEVERGQVLAKIGSIKS-YNIFECEVYILSK 956
E G VG+ L ++ + + GQV+ K G++ + E ++L +
Sbjct: 287 EARPGGLVGVGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLER 337
|
Length = 415 |
| >gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-32
Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 6/138 (4%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
RNI IIAHVD GKTT + +L SG+ + EV G + D E+ERGITI + + +
Sbjct: 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEV--GERVMDSNDLERERGITILAKNTA 59
Query: 68 IFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
I ++ INIIDTPGH DF EVER L ++DG ++++ AS G PQT V ++ +
Sbjct: 60 ITYKD----TKINIIDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE 115
Query: 128 YKVPKMIFVNKMDRIGAN 145
+ ++ +NK+DR A
Sbjct: 116 AGLKPIVVINKIDRPDAR 133
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-32
Identities = 58/179 (32%), Positives = 101/179 (56%), Gaps = 9/179 (5%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RN IIAH+D GK+T +R+L +G+ + E + D M E+ERGITI + +V +
Sbjct: 1 RNFSIIAHIDHGKSTLADRLLELTGT---VSEREMKEQVLDSMDLERERGITIKAQAVRL 57
Query: 69 FWEVNKFK-YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
F++ + Y++N+IDTPGHVDF+ EV RSL +GA++++ A+ G++ QT ++ + +
Sbjct: 58 FYKAKDGEEYLLNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTLANFYLALE 117
Query: 128 YKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF-----NIGIEENYEGIVDII 181
+ + +NK+D A+ + +I+ +G+E+ E IV+ I
Sbjct: 118 NNLEIIPVINKIDLPAADPDRVKQEIEDVLGLDASEAILVSAKTGLGVEDLLEAIVERI 176
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|239755 cd04088, EFG_mtEFG_II, EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-31
Identities = 44/83 (53%), Positives = 62/83 (74%)
Query: 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIND 357
FV+LVFK HDPF+G LSF+R+YSG +K G +YNSTK KE++ R+LRM ++++ +
Sbjct: 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEE 60
Query: 358 AHFGDIVVIVGLKESSTGDTLCS 380
A GDI + GLK+++TGDTLC
Sbjct: 61 AGAGDIGAVAGLKDTATGDTLCD 83
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. mtEFG1 and mtEFG2 show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. Length = 83 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 9e-31
Identities = 85/312 (27%), Positives = 140/312 (44%), Gaps = 42/312 (13%)
Query: 656 TIGHVDHGKTTLTAALTKVSSEIYGGEV-----------RAFDTIDNA------PEEKER 698
T G VD GK+TL L + IY ++ + ID A E+E+
Sbjct: 11 TCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQ 70
Query: 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
GITI ++ + +E + + D PGH Y +NM TGA+ D AIL+ A G + QTR H
Sbjct: 71 GITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRH 130
Query: 759 ILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLA 817
+A +G+ ++VV +NK D V +E+ + + + + + I I A
Sbjct: 131 SFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLK-DVRFIPIS----A 185
Query: 818 LEGKDDNQLGTT------SIKKLLDVLDSSIPTPNRITDKPFLMPIEDV--FSISGRGTV 869
L G DN + + LL++L+ ++ + + K F P++ V ++ RG
Sbjct: 186 LLG--DNVVSKSENMPWYKGPTLLEILE-TVEIADDRSAKAFRFPVQYVNRPNLDFRG-- 240
Query: 870 VTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKRE-E 928
G I G VK G+ E+V + + I F L + AGE V ++L E +
Sbjct: 241 YAGTIASGSVKVGD--EVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVL---ADEID 295
Query: 929 VERGQVLAKIGS 940
+ RG ++ +
Sbjct: 296 ISRGDLIVAADA 307
|
Length = 431 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 4e-30
Identities = 59/147 (40%), Positives = 92/147 (62%), Gaps = 12/147 (8%)
Query: 3 NKVLYFRNIGIIAHVDAGKTTTTERILFYSG--SSHKIGEVHHGTTITDWMQQEQERGIT 60
+ RN+ +IAHVD GK+T T+ ++ +G SS G+ TD EQERGIT
Sbjct: 14 DNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGD----ARFTDTRADEQERGIT 69
Query: 61 ITSASVSIFWE------VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI 114
I S +S+++E +K ++IN+ID+PGHVDF+ EV +LRV DGA++++ G+
Sbjct: 70 IKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGV 129
Query: 115 QPQTETVWFQSQKYKVPKMIFVNKMDR 141
QTETV Q+ + ++ ++F+NK+DR
Sbjct: 130 CVQTETVLRQALQERIRPVLFINKVDR 156
|
Length = 836 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-29
Identities = 56/137 (40%), Positives = 80/137 (58%), Gaps = 6/137 (4%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
RNI IIAHVD GKTT + +L SG+ V + D E+ERGITI + + +
Sbjct: 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE--RVMDSNDLERERGITILAKNTA 58
Query: 68 IFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
I + K INI+DTPGH DF EVER L ++DG ++++ AS G PQT V ++ +
Sbjct: 59 IRYNGTK----INIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE 114
Query: 128 YKVPKMIFVNKMDRIGA 144
+ ++ +NK+DR A
Sbjct: 115 LGLKPIVVINKIDRPSA 131
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|217387 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 8e-29
Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 940 SIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNI 999
IK + F+ +VYIL+ TP FNGY+P FY T DVTG LP E V+PGDN
Sbjct: 1 PIKPHTKFKAQVYILNH-----PTPIFNGYRPVFYCHTADVTGKFILPGKKEFVMPGDNA 55
Query: 1000 KLNVTLLSSIAIEIGLRFAIRE 1021
+ V L+ IA+E G RFAIRE
Sbjct: 56 IVTVELIKPIAVEKGQRFAIRE 77
|
Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA and binding to EF-Ts pfam00889. Length = 91 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-28
Identities = 86/279 (30%), Positives = 127/279 (45%), Gaps = 29/279 (10%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEV---RAFDTIDNAPEEKERGITISTSHVEYESEN 713
I HVDHGKTTL AL K S E R D+ D E+ERGITI +
Sbjct: 7 IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSND---LERERGITILAKNTAIRYNG 63
Query: 714 KHYAHVDCPGHADY------IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGV 767
VD PGHAD+ + M+ DG +L+ A +GPMPQTR + A ++G+
Sbjct: 64 TKINIVDTPGHADFGGEVERVLGMV------DGVLLLVDASEGPMPQTRFVLKKALELGL 117
Query: 768 PNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE--NTKIVIGSALLALEGKDDNQ 825
IVV +NK D + D V E+ +L E D E + IV S D +
Sbjct: 118 KPIVV-INKID--RPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD 174
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
+ L D + +P P D+P M + ++ G + G++ RG VK G+++
Sbjct: 175 PSDN-MAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQV 233
Query: 886 EIVGYKQTIKTT-ITGIEMFK----KTLDEGLAGENVGI 919
++ TI+ I+ + F+ +DE AG+ V +
Sbjct: 234 ALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAV 272
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-27
Identities = 55/137 (40%), Positives = 80/137 (58%), Gaps = 6/137 (4%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
RNI IIAHVD GKTT + +L SG+ + EV + D E+ERGITI + + +
Sbjct: 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV--AERVMDSNDLEKERGITILAKNTA 62
Query: 68 IFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
+ + INI+DTPGH DF EVER L ++DG ++++ AS G PQT V ++
Sbjct: 63 VNYN----GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA 118
Query: 128 YKVPKMIFVNKMDRIGA 144
+ ++ +NK+DR A
Sbjct: 119 LGLKPIVVINKIDRPDA 135
|
Length = 603 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 8e-27
Identities = 59/147 (40%), Positives = 90/147 (61%), Gaps = 18/147 (12%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSG--SSHKIGEVHHGTTITDWMQQEQERGITITSASV 66
RN+ +IAHVD GK+T T+ ++ +G + G+V +TD E ERGITI S +
Sbjct: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR----MTDTRADEAERGITIKSTGI 75
Query: 67 SIFWEVNK-----FK-------YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI 114
S+++E+ FK Y+IN+ID+PGHVDF+ EV +LR+ DGA++++ G+
Sbjct: 76 SLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
Query: 115 QPQTETVWFQSQKYKVPKMIFVNKMDR 141
QTETV Q+ ++ ++ VNKMDR
Sbjct: 136 CVQTETVLRQALGERIRPVLTVNKMDR 162
|
Length = 843 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 4e-25
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 19/178 (10%)
Query: 656 TIGHVDHGKTTLTAAL---TK----------VSSEIYGGEVRAFD---TIDNAPEEKERG 699
T G VD GK+TL L +K S+ G + D +D E+E+G
Sbjct: 4 TCGSVDDGKSTLIGRLLYDSKSIFEDQLAALERSKSSGTQGEKLDLALLVDGLQAEREQG 63
Query: 700 ITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHI 759
ITI ++ + + + + D PGH Y +NM+TGA+ D AIL+ A G + QTR H
Sbjct: 64 ITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHS 123
Query: 760 LLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIGSALL 816
+A +G+ ++VV +NK D V D+E+ + ++ + E+ + SAL
Sbjct: 124 YIASLLGIRHVVVAVNKMDLVDYDEEVFEEIKADYLAFAASLGI--EDITFIPISALE 179
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 5e-25
Identities = 49/111 (44%), Positives = 73/111 (65%), Gaps = 4/111 (3%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RN IIAH+D GK+T +R+L Y+G+ I E + D M E+ERGITI + +V +
Sbjct: 4 RNFSIIAHIDHGKSTLADRLLEYTGA---ISEREMREQVLDSMDLERERGITIKAQAVRL 60
Query: 69 FW-EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
+ + Y++N+IDTPGHVDF+ EV RSL +GA++++ A+ GI+ QT
Sbjct: 61 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQT 111
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-24
Identities = 90/282 (31%), Positives = 127/282 (45%), Gaps = 35/282 (12%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGE---VRAFDTIDNAPEEKERGITI---STSHVEYE 710
I HVDHGKTTL AL K S E R D+ D EKERGITI +T+ V Y
Sbjct: 11 IAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSND---LEKERGITILAKNTA-VNYN 66
Query: 711 SENKHYAHVDCPGHADY------IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQ 764
VD PGHAD+ + +M+ DG +L+ A +GPMPQTR + A
Sbjct: 67 --GTRINIVDTPGHADFGGEVERVLSMV------DGVLLLVDASEGPMPQTRFVLKKALA 118
Query: 765 VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK--IVIGSALLALEGKD 822
+G+ IVV +NK D + D V E+ +L E E IV SA D
Sbjct: 119 LGLKPIVV-INKID--RPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLD 175
Query: 823 DNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNG 882
+ L + + +P P D+P M + + S G + G+I RG VK
Sbjct: 176 PEDEADD-MAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPN 234
Query: 883 EEIEIVGYKQTIKT-TITGIEMF----KKTLDEGLAGENVGI 919
+++ ++ T + IT + F + ++E AG+ V I
Sbjct: 235 QQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAI 276
|
Length = 603 |
| >gnl|CDD|197906 smart00838, EFG_C, Elongation factor G C-terminus | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 1e-24
Identities = 33/65 (50%), Positives = 48/65 (73%)
Query: 591 ILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLR 650
+LEPIMKVEV +P E++G V+GD+N +RG I + ++I + +PL E+FGY+TDLR
Sbjct: 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLR 60
Query: 651 SNTKG 655
S T+G
Sbjct: 61 SATQG 65
|
This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. Length = 85 |
| >gnl|CDD|239683 cd03713, EFG_mtEFG_C, EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 1e-24
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSN 652
EPIMKVEV +P E++G V+GD++ +RG I +K+I + +PL E+FGYSTDLRS
Sbjct: 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRSL 60
Query: 653 TKGT 656
T+G
Sbjct: 61 TQGR 64
|
Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. Length = 78 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-24
Identities = 47/111 (42%), Positives = 72/111 (64%), Gaps = 4/111 (3%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RN IIAH+D GK+T +R+L +G + E + D M E+ERGITI + +V +
Sbjct: 10 RNFSIIAHIDHGKSTLADRLLELTGG---LSEREMRAQVLDSMDIERERGITIKAQAVRL 66
Query: 69 FWEVNKFK-YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
++ + Y++N+IDTPGHVDF+ EV RSL +GA++++ AS G++ QT
Sbjct: 67 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT 117
|
Length = 603 |
| >gnl|CDD|238838 cd01680, EFG_like_IV, Elongation Factor G-like domain IV | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 3e-24
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIP 530
Y+E+I+K V G++ ++ GGK Q+G V +R+EP LE + +P E
Sbjct: 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEP--LERGSGVRVVDPVDEELLPAELKE 58
Query: 531 AIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKA 587
A+E+GI + G + GYP+ ++V +++ +H S+E F+ AA A + A +KA
Sbjct: 59 AVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKA 115
|
This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm. Length = 116 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-24
Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 13/150 (8%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTI---TDWMQQEQERGITITSAS 65
RN+ I H+ GKT+ + ++ + + V G TD + EQERGI+I S
Sbjct: 1 RNVCIAGHLHHGKTSLLDMLIEQT--HKRTPSVKLGWKPLRYTDTRKDEQERGISIKSNP 58
Query: 66 VSIFWEVNKFK-YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
+S+ E +K K Y+INIIDTPGHV+F EV +LR+ DG V+++ G+ TE +
Sbjct: 59 ISLVLEDSKGKSYLINIIDTPGHVNFMDEVAAALRLCDGVVLVVDVVEGLTSVTERLIRH 118
Query: 125 SQKYKVPKMIFVNKMDRIGANYNNCIIDIK 154
+ + +P ++ +NK+DR+ I+++K
Sbjct: 119 AIQEGLPMVLVINKIDRL-------ILELK 141
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 8e-24
Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 24/144 (16%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITI----STSHVEYE 710
G +GHVD GKT+L AL++++S AFD P+ +ERGIT+ S+ V+
Sbjct: 4 GLLGHVDSGKTSLAKALSEIAS------TAAFD---KNPQSQERGITLDLGFSSFEVDKP 54
Query: 711 SENKHYAH----------VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHIL 760
+ + VDCPGHA I+ +I GA +D +LV A G QT E ++
Sbjct: 55 KHLEDNENPQIENYQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDAKKGIQTQTAECLV 114
Query: 761 LARQVGVPNIVVFLNKADCVQDKE 784
+ + P IVV LNK D + ++E
Sbjct: 115 IGELLCKPLIVV-LNKIDLIPEEE 137
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
| >gnl|CDD|206675 cd01888, eIF2_gamma, Gamma subunit of initiation factor 2 (eIF2 gamma) | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 9e-24
Identities = 69/221 (31%), Positives = 99/221 (44%), Gaps = 55/221 (24%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITI------------ 702
GTIGHV HGKTTL AL+ V + EE +R ITI
Sbjct: 4 GTIGHVAHGKTTLVKALSGVWT-------------VRHKEELKRNITIKLGYANAKIYKC 50
Query: 703 -------STSHVEYESEN--------KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSA 747
E E +H + VDCPGH + M++GAA MDGA+L+ +A
Sbjct: 51 PNCGCPRPYDTPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAA 110
Query: 748 VDG-PMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806
+ P PQT EH+ +G+ +I++ NK D V++++ L+ E +I+E + EN
Sbjct: 111 NEPCPQPQTSEHLAALEIMGLKHIIILQNKIDLVKEEQALENYE-QIKEFVKGT--IAEN 167
Query: 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR 847
I+ SA L +I L + + IPTP R
Sbjct: 168 APIIPISAQLK-----------YNIDVLCEYIVKKIPTPPR 197
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the selenocysteine-specific elongation factor from eubacteria. The translational factor components of the ternary complex, IF2 in eubacteria and eIF2 in eukaryotes are not the same protein (despite their unfortunately similar names). Both factors are GTPases; however, eubacterial IF-2 is a single polypeptide, while eIF2 is heterotrimeric. eIF2-gamma is a member of the same family as eubacterial IF2, but the two proteins are only distantly related. This family includes translation initiation, elongation, and release factors. Length = 197 |
| >gnl|CDD|239677 cd03706, mtEFTU_III, Domain III of mitochondrial EF-TU (mtEF-TU) | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 3e-23
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 942 KSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKL 1001
K ++ E +VYILSK EGGRH PF + ++PQ + T D LP EMV+PG++ K+
Sbjct: 1 KPHDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLPPGKEMVMPGEDTKV 60
Query: 1002 NVTLLSSIAIEIGLRFAIRE 1021
+ L + +E G RF +R+
Sbjct: 61 TLILRRPMVLEKGQRFTLRD 80
|
mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors. Length = 93 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 4e-23
Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 22/120 (18%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTIT---------DWMQQEQERGI 59
RN IIAH+D GK+T +R++ +G T++ D M E+ERGI
Sbjct: 8 RNFSIIAHIDHGKSTLADRLIELTG------------TLSEREMKAQVLDSMDLERERGI 55
Query: 60 TITSASVSIFWEVNKFK-YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
TI + +V + ++ + Y++N+IDTPGHVDF+ EV RSL +GA++++ AS G++ QT
Sbjct: 56 TIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT 115
|
Length = 600 |
| >gnl|CDD|239759 cd04092, mtEFG2_II_like, mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 4e-23
Identities = 37/81 (45%), Positives = 54/81 (66%)
Query: 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIND 357
+L FK+ HDP G L+F+R+YSG +K G +YN+ KE+I R+L+ FA+ ++I
Sbjct: 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPS 60
Query: 358 AHFGDIVVIVGLKESSTGDTL 378
G+I VI GLK++ TGDTL
Sbjct: 61 LSAGNIGVITGLKQTRTGDTL 81
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are not present in this group. Length = 83 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-22
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 30/183 (16%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
I I+ + GK+T R+L S I E GTT +E G T
Sbjct: 2 IKIVIVGDPNVGKSTLLNRLLGNKIS---ITEYKPGTTRNYVTTVIEEDGKTYK------ 52
Query: 69 FWEVNKFKYMINIIDTPGHVDF-------TIEVERSLRVLDGAVIIICASSGIQPQTETV 121
N++DT G D+ VE SLRV D ++++ ++ QT+ +
Sbjct: 53 ----------FNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEI 102
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFN-CIVLPINFNIGIEENYEGIVDI 180
+ VP ++ NK+D A + + K N ++P+ + +N + I
Sbjct: 103 I-HHAESGVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPL--SAETGKNIDSAFKI 159
Query: 181 INK 183
+
Sbjct: 160 VEA 162
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-22
Identities = 85/313 (27%), Positives = 145/313 (46%), Gaps = 42/313 (13%)
Query: 656 TIGHVDHGKTTLTAALTKVSSEIY-----------------GGEVRAFDTIDNAPEEKER 698
T G VD GK+TL L + +IY GGE+ +D E+E+
Sbjct: 5 TCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQ 64
Query: 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
GITI ++ + ++ + + D PGH Y +NM TGA+ D A+L+ A G + QTR H
Sbjct: 65 GITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH 124
Query: 759 ILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLA 817
+A +G+ ++V+ +NK D V D+E+ + ++ + + F + + SAL
Sbjct: 125 SYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGF--RDVTFIPLSAL-- 180
Query: 818 LEGKDDNQL-GTTSIK-----KLLDVLDSSIPTPNRITDKPFLMPIEDVF--SISGRGTV 869
K DN + + S+ LL++L+ ++ D P P++ V ++ RG
Sbjct: 181 ---KGDNVVSRSESMPWYSGPTLLEILE-TVEVERDAQDLPLRFPVQYVNRPNLDFRG-- 234
Query: 870 VTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKRE-E 928
G I G V G+E+ ++ + + I F L++ AG+ V + L E +
Sbjct: 235 YAGTIASGSVHVGDEVVVL--PSGRSSRVARIVTFDGDLEQARAGQAVTLTL---DDEID 289
Query: 929 VERGQVLAKIGSI 941
+ RG +LA S
Sbjct: 290 ISRGDLLAAADSA 302
|
Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-22
Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFDTI-DNAPEEKERGITISTS--HVE 708
G + H+D GKTTLT + T + S+I GEV D +E+ERGITI+++ +
Sbjct: 14 GIVAHIDAGKTTLTERILFYTGIISKI--GEVHDGAATMDWMEQEQERGITITSAATTLF 71
Query: 709 YESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVP 768
++ + + +D PGH D+ + +DGA++V AV+G PQT A + GVP
Sbjct: 72 WKGDYRINL-IDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVP 130
Query: 769 NIVVFLNKADCVQDKELLDLVEM 791
++F+NK D + +VE
Sbjct: 131 -RILFVNKMD-RLGADFYLVVEQ 151
|
Length = 697 |
| >gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 2e-21
Identities = 65/201 (32%), Positives = 96/201 (47%), Gaps = 26/201 (12%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
I HVDHGKTTL AL K S E +D+ E+ERGITI + ++
Sbjct: 8 IAHVDHGKTTLVDALLKQSGTFRENEEVGERVMDSNDLERERGITILAKNTAITYKDTKI 67
Query: 717 AHVDCPGHADY------IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
+D PGHAD+ + +M+ DG +L+ A +GPMPQTR + A + G+ I
Sbjct: 68 NIIDTPGHADFGGEVERVLSMV------DGVLLLVDASEGPMPQTRFVLKKALEAGLKPI 121
Query: 771 VVFLNKAD--CVQDKELLDLVEMEIRELLTEYDFDGE--NTKIVIGSAL--LALEGKDDN 824
VV +NK D + +E++D E+ +L E + E + IV SA A DD
Sbjct: 122 VV-INKIDRPDARPEEVVD----EVFDLFLELNATDEQLDFPIVYASAKNGWASLNLDDP 176
Query: 825 QLGTTSIKKLLDVLDSSIPTP 845
+ + L + + +P P
Sbjct: 177 ---SEDLDPLFETIIEHVPAP 194
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194 |
| >gnl|CDD|238772 cd01514, Elongation_Factor_C, Elongation factor G C-terminus | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 2e-21
Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRG-IINTIIDHENFKIINSYIPLRELFGYSTDLRS 651
EPIMKVE+ +P E+LG V+GD++K+RG I+ +I + +PL E+FG++TDLRS
Sbjct: 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRS 60
Query: 652 NTKGT 656
T+G
Sbjct: 61 LTQGR 65
|
This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. Tet(M) and Tet(O) mediate Tc resistance. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. Yeast Snu114p is essential for cell viability and for splicing in vivo. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. The function of LepA proteins is unknown. Length = 79 |
| >gnl|CDD|240362 PTZ00327, PTZ00327, eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 3e-21
Identities = 81/277 (29%), Positives = 123/277 (44%), Gaps = 73/277 (26%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITIS----------- 703
GTIGHV HGK+T+ AL+ V + + EK R ITI
Sbjct: 38 GTIGHVAHGKSTVVKALSGVKTVRF-------------KREKVRNITIKLGYANAKIYKC 84
Query: 704 ------TSHVEYESEN----------------KHYAHVDCPGHADYIKNMITGAAQMDGA 741
T + Y S +H + VDCPGH + M+ GAA MD A
Sbjct: 85 PKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAA 144
Query: 742 ILVCSAVDG-PMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800
+L+ +A + P PQT EH+ + + +I++ NK D V++ + D E EIR +
Sbjct: 145 LLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYE-EIRNFVK-- 201
Query: 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR-ITDKPFLM---- 855
+N I+ SA L +I +L+ + + IP P R +T P ++
Sbjct: 202 GTIADNAPIIPISAQLKY-----------NIDVVLEYICTQIPIPKRDLTSPPRMIVIRS 250
Query: 856 -----PIEDVFSISGRGTVVTGKIERGIVKNGEEIEI 887
P ED+ ++ +G V G I +G++K G+EIEI
Sbjct: 251 FDVNKPGEDIENL--KGGVAGGSILQGVLKVGDEIEI 285
|
Length = 460 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 5e-21
Identities = 56/137 (40%), Positives = 80/137 (58%), Gaps = 6/137 (4%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
RNI IIAHVD GKTT +++L SG+ E + D E+ERGITI + + +
Sbjct: 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQE--RVMDSNDLEKERGITILAKNTA 62
Query: 68 IFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
I W Y INI+DTPGH DF EVER + ++D ++++ A G PQT V ++
Sbjct: 63 IKWN----DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA 118
Query: 128 YKVPKMIFVNKMDRIGA 144
Y + ++ +NK+DR GA
Sbjct: 119 YGLKPIVVINKVDRPGA 135
|
Length = 607 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 6e-21
Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYG-GEVRAFDTI-DNAPEEKERGITISTSHVEYESENK 714
+GH GKTTLT A+ + I+ GEV T D PEE+ERGI+I+++ E +
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGH 60
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
+D PGH D+ + +DGA++V AV G PQT A + GVP I +F+
Sbjct: 61 KINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFV 119
Query: 775 NKAD 778
NK D
Sbjct: 120 NKMD 123
|
Length = 668 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 8e-21
Identities = 56/165 (33%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 658 GHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYESENKH 715
GHVDHGKTTL + K + + GE GIT I V + +
Sbjct: 7 GHVDHGKTTLLDKIRK--TNVAAGEAG--------------GITQHIGAYQVPIDVKIPG 50
Query: 716 YAHVDCPGHADYIKNMITGAAQM-DGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
+D PGH + NM A + D AILV +A DG MPQT E I A+ VP I+V +
Sbjct: 51 ITFIDTPGHEAF-TNMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAANVP-IIVAI 108
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGEN----TKIVIGSAL 815
NK D E ++ L+E GE IV SA
Sbjct: 109 NKIDKPYGTEADP---ERVKNELSELGLVGEEWGGDVSIVPISAK 150
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 9e-21
Identities = 91/317 (28%), Positives = 148/317 (46%), Gaps = 60/317 (18%)
Query: 656 TIGHVDHGKTTLT---------------AALTKVSSEI--YGGEVRAFDTIDNAPEEKER 698
T G VD GK+TL AAL + S ++ G E+ +D E+E+
Sbjct: 29 TCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQ 88
Query: 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
GITI ++ + + + + D PGH Y +NM+TGA+ D AI++ A G + QTR H
Sbjct: 89 GITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH 148
Query: 759 ILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLA 817
+A +G+ ++V+ +NK D V D+E+ D + + R + + T I I SAL
Sbjct: 149 SFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGL-HDVTFIPI-SAL-- 204
Query: 818 LEGKDDNQL----------GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDV------F 861
K DN + G + LL+ L++ +R K F P++ V F
Sbjct: 205 ---KGDNVVTRSARMPWYEGPS----LLEHLETVEIASDR-NLKDFRFPVQYVNRPNLDF 256
Query: 862 SISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILL 921
RG G + G+V+ G+E+ ++ +T + + I LDE AG+ V + L
Sbjct: 257 ----RG--FAGTVASGVVRPGDEVVVLPSGKT--SRVKRIVTPDGDLDEAFAGQAVTLTL 308
Query: 922 RSVKREEVE--RGQVLA 936
+E++ RG +LA
Sbjct: 309 ----ADEIDISRGDMLA 321
|
Length = 632 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 56/149 (37%), Positives = 83/149 (55%), Gaps = 9/149 (6%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFDTI-DNAPEEKERGITISTSHVEYE 710
G + HVD GKTTLT +L + E+ G V T D+ E++RGITI ++ ++
Sbjct: 3 GILAHVDAGKTTLTESLLYTSGAIREL--GSVDKGTTRTDSMELERQRGITIFSAVASFQ 60
Query: 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
E+ +D PGH D+I + + +DGAILV SAV+G QTR L R++ +P I
Sbjct: 61 WEDTKVNIIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILFRLLRKLNIPTI 120
Query: 771 VVFLNKADCVQDKELLDLVEMEIRELLTE 799
+F+NK D + L+ V EI+E L+
Sbjct: 121 -IFVNKID--RAGADLEKVYQEIKEKLSP 146
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|201388 pfam00679, EFG_C, Elongation factor G C-terminus | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 1e-20
Identities = 34/67 (50%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 591 ILEPIMKVEVNLPSEFLGIVVGDINKKRG-IINTIIDHENFKIINSYIPLRELFGYSTDL 649
+LEPIMKVE+ +P E+LG V+GD+N++RG I++ D +I + +PL ELFG+ST+L
Sbjct: 2 LLEPIMKVEITVPEEYLGDVIGDLNQRRGEILDMEPDGGGRVVIEAEVPLAELFGFSTEL 61
Query: 650 RSNTKGT 656
RS T+G
Sbjct: 62 RSLTQGR 68
|
This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. Length = 89 |
| >gnl|CDD|239667 cd03696, selB_II, selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 2e-20
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGL 912
F +PI+ VF++ G+GTVVTG + G VK G+++EI+ + + + I++ K ++E
Sbjct: 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETR--VRSIQVHGKDVEEAK 58
Query: 913 AGENVGILLRSVKREEVERGQVLAK 937
AG+ V + L V +++ERG VL+
Sbjct: 59 AGDRVALNLTGVDAKDLERGDVLSS 83
|
SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. Length = 83 |
| >gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-19
Identities = 87/318 (27%), Positives = 151/318 (47%), Gaps = 53/318 (16%)
Query: 656 TIGHVDHGKTTLTAALTKVSSEIYGGEVRAF-----------DTIDNA------PEEKER 698
T G VD GK+TL L + +IY ++ + + +D A E+E+
Sbjct: 32 TCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQ 91
Query: 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
GITI ++ + +E + + D PGH Y +NM TGA+ D AIL+ A G + QTR H
Sbjct: 92 GITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH 151
Query: 759 ILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLA 817
+A +G+ ++VV +NK D V +E+ + + + + + + + V L A
Sbjct: 152 SFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGN-LDIRFV---PLSA 207
Query: 818 LEGKDDNQL----------GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVF--SISG 865
LEG DN + G T LL+VL+ ++ + +PF P++ V ++
Sbjct: 208 LEG--DNVVSQSESMPWYSGPT----LLEVLE-TVDIQRVVDAQPFRFPVQYVNRPNLDF 260
Query: 866 RGTVVTGKIERGIVKNGEEIEIV--GYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRS 923
RG G + G+VK G+ ++++ G + + +T F L+E AGE + ++L
Sbjct: 261 RG--YAGTLASGVVKVGDRVKVLPSGKESNVARIVT----FDGDLEEAFAGEAITLVL-- 312
Query: 924 VKRE-EVERGQVLAKIGS 940
+ E ++ RG +L
Sbjct: 313 -EDEIDISRGDLLVAADE 329
|
Length = 474 |
| >gnl|CDD|239758 cd04091, mtEFG1_II_like, mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 3e-19
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIND 357
FV L FK+ F G L+++RIY G +K GD +YN K ++ R++RM +N +++ +
Sbjct: 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEE 59
Query: 358 AHFGDIVVIVGLKESSTGDTLCS 380
A GDI I G+ + ++GDT
Sbjct: 60 AGAGDICAIFGI-DCASGDTFTD 81
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG2s are not present in this group. Length = 81 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (229), Expect = 4e-19
Identities = 77/234 (32%), Positives = 109/234 (46%), Gaps = 6/234 (2%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
I HVDHGKTTL L + S +D+ EKERGITI + + +
Sbjct: 11 IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRI 70
Query: 717 AHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNK 776
VD PGHAD+ + + +D +LV A DGPMPQTR A G+ IVV +NK
Sbjct: 71 NIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVV-INK 129
Query: 777 ADCVQDKELLDLVEMEIRELLTEYDFDGE--NTKIVIGSALLALEGKDDNQLGTTSIKKL 834
D + D V ++ +L D E + IV SAL + G D + + L
Sbjct: 130 VD--RPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMA-EDMTPL 186
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIV 888
+ +P P+ D PF M I + S G + G+I+RG VK +++ I+
Sbjct: 187 YQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTII 240
|
Length = 607 |
| >gnl|CDD|239764 cd04097, mtEFG1_C, mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 8e-19
Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGII-NTIIDHENFKIINSYIPLRELFGYSTDLRS 651
EPIMKVEV P+EF G V+G +NK++G I +T + F + + +PL ++FGYST+LRS
Sbjct: 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLE-AEVPLNDMFGYSTELRS 59
Query: 652 NTKG 655
T+G
Sbjct: 60 MTQG 63
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG2s are not present in this group. Length = 78 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-18
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 5/145 (3%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYG-GEVRAFDTI-DNAPEEKERGITISTSHVEYESE 712
G + H+D GKTTLT + + +I+ GEV T+ D P+E+ERGITI ++ + +
Sbjct: 12 GILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD 71
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
N +D PGH D+ + +DGA++V AV G PQT A + G+P ++
Sbjct: 72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP-RLI 130
Query: 773 FLNKADCVQDKELLDLVEMEIRELL 797
F+NK D V +L ++E +I E
Sbjct: 131 FINKMDRVGA-DLFKVLE-DIEERF 153
|
Length = 687 |
| >gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-18
Identities = 51/138 (36%), Positives = 70/138 (50%), Gaps = 20/138 (14%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV---- 707
I HVDHGKTTL+ +L + SE G+ R DT + +E+ERGITI +S +
Sbjct: 4 CIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYLDTRE---DEQERGITIKSSAISLYF 60
Query: 708 EYESE---NKHYA--HVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLA 762
EYE E Y +D PGH D+ + DGA++V AV+G QT +L
Sbjct: 61 EYEEEKMDGNDYLINLIDSPGHVDFSSEVTAALRLTDGALVVVDAVEGVCVQT--ETVL- 117
Query: 763 RQVGVPNI--VVFLNKAD 778
RQ + V+ +NK D
Sbjct: 118 RQALEERVKPVLVINKID 135
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 1e-17
Identities = 64/153 (41%), Positives = 85/153 (55%), Gaps = 23/153 (15%)
Query: 655 GTIGHVDHGKTTLT----AALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE-- 708
G I H+DHGKTTL+ A +S E+ GE A D + EE+ RGITI ++V
Sbjct: 24 GIIAHIDHGKTTLSDNLLAGAGMISEEL-AGEQLALDFDE---EEQARGITIKAANVSMV 79
Query: 709 YESENKHYA--HVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV- 765
+E E K Y +D PGH D+ ++ +DGAI+V AV+G MPQT E +L RQ
Sbjct: 80 HEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVL--RQAL 136
Query: 766 --GV-PNIVVFLNKADCVQDKEL-LDLVEMEIR 794
V P V+F+NK D + KEL L EM+ R
Sbjct: 137 RERVKP--VLFINKVDRLI-KELKLTPQEMQQR 166
|
Length = 731 |
| >gnl|CDD|217388 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2 | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-17
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 867 GTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKR 926
GTV TG++E G +K G+++ I K +T +EMF L E +AG N GI+L +
Sbjct: 1 GTVATGRVESGTLKKGDKVVIGPNGTGKKGRVTSLEMFHGDLREAVAGANAGIILAGIGL 60
Query: 927 EEVERGQVLA 936
++++RG L
Sbjct: 61 KDIKRGDTLT 70
|
Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain. Length = 70 |
| >gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-17
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGL 912
+ VF GRGTV TG++E G +K G+++ + +K + ++ FK +DE +
Sbjct: 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAV 60
Query: 913 AGENVGILLRSVKREEVERGQVLAK 937
AG+ VGI+L+ +++++ G L
Sbjct: 61 AGDIVGIVLK--DKDDIKIGDTLTD 83
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. Length = 83 |
| >gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 6e-17
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYG-GEVRAFDTI-DNAPEEKERGITISTSHVEYESENK 714
+GH GKTTL AL + I G V +T+ D PEEK+R ++I TS E
Sbjct: 5 VGHSGSGKTTLAEALLYATGAIDRLGRVEDGNTVSDYDPEEKKRKMSIETSVAPLEWNGH 64
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
+D PG+AD++ ++ +D A++V A G T + +P ++F+
Sbjct: 65 KINLIDTPGYADFVGETLSALRAVDAALIVVEAQSGVEVGTEKVWEFLDDAKLP-RIIFI 123
Query: 775 NKAD 778
NK D
Sbjct: 124 NKMD 127
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 |
| >gnl|CDD|239664 cd03693, EF1_alpha_II, EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 6e-16
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 849 TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTL 908
TDKP +PI+DV+ I G GTV G++E G++K G + + + +EM + L
Sbjct: 1 TDKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG--VTGEVKSVEMHHEPL 58
Query: 909 DEGLAGENVGILLRSVKREEVERGQV 934
+E L G+NVG +++V +++++RG V
Sbjct: 59 EEALPGDNVGFNVKNVSKKDIKRGDV 84
|
EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression. Length = 91 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 7e-15
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 35/189 (18%)
Query: 655 GTIGHVDHGKTTLT----AALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV--- 707
G + H+DHGKTTL+ A +S E+ G+ D + +E+ERGITI+ ++V
Sbjct: 23 GIVAHIDHGKTTLSDNLLAGAGMISEEL-AGQQLYLDFDE---QEQERGITINAANVSMV 78
Query: 708 -EYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVG 766
EYE +D PGH D+ ++ +DGAI+V AV+G MPQT E +L RQ
Sbjct: 79 HEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVL--RQAL 135
Query: 767 VPNI--VVFLNKADCVQDKELLDLVEMEIR------------------ELLTEYDFDGEN 806
N+ V+F+NK D + ++ L E++ R E ++ E+
Sbjct: 136 KENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVED 195
Query: 807 TKIVIGSAL 815
+ GSA
Sbjct: 196 GSVAFGSAY 204
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 9e-15
Identities = 70/244 (28%), Positives = 96/244 (39%), Gaps = 64/244 (26%)
Query: 658 GHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYES-E 712
GHVDHGKTTL + T V A E GIT I V + +
Sbjct: 12 GHVDHGKTTLLDKIRKTNV-----------------AAGE-AGGITQHIGAYQVPLDVIK 53
Query: 713 NKHYAHVDCPGHADYIKNMIT-GAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIV 771
+D PGH M GA+ D AILV +A DG MPQT E I A+ GVP IV
Sbjct: 54 IPGITFIDTPGHE-AFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP-IV 111
Query: 772 VFLNKADCVQDKELLDLVEMEIRELLTEYDFD----GENTKIVIGSALLALEGKDDNQLG 827
V +NK D + + +EL EY G + V SA
Sbjct: 112 VAINKIDKPEAN-----PDKVKQEL-QEYGLVPEEWGGDVIFVPVSAK-----------T 154
Query: 828 TTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERG-------IVK 880
I +LL+++ + + ++ RGTV+ K+++G IV+
Sbjct: 155 GEGIDELLELILLL-------AEV---LELKANPEGPARGTVIEVKLDKGLGPVATVIVQ 204
Query: 881 NGEE 884
+G
Sbjct: 205 DGTL 208
|
Length = 509 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-14
Identities = 73/236 (30%), Positives = 104/236 (44%), Gaps = 41/236 (17%)
Query: 657 IGHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYESE 712
+GHVDHGKT+L ++ TKV+ GG IT I HVE E +
Sbjct: 93 MGHVDHGKTSLLDSIRKTKVAQGEAGG------------------ITQHIGAYHVENE-D 133
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
K +D PGH + GA D +LV +A DG MPQT E I A+ VP I+V
Sbjct: 134 GKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIV 192
Query: 773 FLNKADCVQDKELLDLVEMEIREL-LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSI 831
+NK D + + D V+ E+ E L D+ G+ T V SAL I
Sbjct: 193 AINKID--KPEANPDRVKQELSEYGLVPEDWGGD-TIFVPVSALTG-----------DGI 238
Query: 832 KKLLD--VLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
+LLD +L S + + + + GRG V T ++ G ++ G+ +
Sbjct: 239 DELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIV 294
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-13
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 34/171 (19%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGS--SHKIGEVHHGTT-----------ITDWMQQEQE 56
N+ +I HVD GK+T R+L+ +G+ H I E+ + D +++E+E
Sbjct: 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERE 67
Query: 57 RGITITSASVSIFWEVNKF---KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICA--S 111
RG+TI A KF KY I+D PGH DF + D AV+++ A +
Sbjct: 68 RGVTIDLAHK-------KFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA 120
Query: 112 SGIQPQTETVWFQSQKYKVPKMIF-VNKMDRIGANYNNCIIDIKKKFNCIV 161
G+ PQT F ++ + ++I +NKMD + NY+ +K++ +
Sbjct: 121 GGVMPQTREHVFLARTLGINQLIVAINKMDAV--NYD------EKRYEEVK 163
|
Length = 425 |
| >gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-13
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 29/169 (17%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGS---------SHKIGEVHHGTT----ITDWMQQEQE 56
N+ I HVD GK+TT +L+ G+ + E + + D +++E+E
Sbjct: 9 NVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERE 68
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIIC---ASSG 113
RG+TI A W+ KY + I+D PGH DF + D AV+++
Sbjct: 69 RGVTIDVA----HWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE 124
Query: 114 IQPQTETVWFQSQKYKVPKMIF-VNKMDRIGANYNNCIIDIKKKFNCIV 161
+QPQT F ++ + ++I +NKMD + NY+ +++F I
Sbjct: 125 VQPQTREHAFLARTLGINQLIVAINKMDSV--NYD------EEEFEAIK 165
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels [Protein synthesis, Translation factors]. Length = 426 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-13
Identities = 51/221 (23%), Positives = 103/221 (46%), Gaps = 30/221 (13%)
Query: 268 LLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVG 327
L ++I ++P+P +L+ LV + +D +LG ++ R++ G +K G
Sbjct: 182 LFDAIVRHVPAP----------KGDLD-EPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKG 230
Query: 328 D---LVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSEN 384
L+ +I ++L + +I++A GDIV + GL++ + G+T+
Sbjct: 231 QQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVP 290
Query: 385 IQLENIETPIPVISISIEPIFKND-----QE-------KLLNILQKFCKEDPSLLLSINN 432
L I P +S++ ND +E + + L + + + +L +
Sbjct: 291 EALPTITVDEPTLSMTFSV---NDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTE 347
Query: 433 NTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKE 473
+ + +SG GELHL I+++ + +E + ++ +PQV YKE
Sbjct: 348 SADKFEVSGRGELHLSILIETMRRE-GFELQVGRPQVIYKE 387
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 4e-13
Identities = 47/132 (35%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 655 GTIGHVDHGKTTLTAA---LTKVSSEIYGGEVRAFDTI-DNAPEEKERGITISTSHVEYE 710
G I H+D GKTT T T +I GEV D +E+ERGITI ++
Sbjct: 3 GIIAHIDAGKTTTTERILYYTGRIHKI--GEVHGGGATMDWMEQERERGITIQSAATTCF 60
Query: 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQT----REHILLARQVG 766
++ +D PGH D+ + +DGA+ V AV G PQT R+ A + G
Sbjct: 61 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVQPQTETVWRQ----ADRYG 116
Query: 767 VPNIVVFLNKAD 778
VP I F+NK D
Sbjct: 117 VPRI-AFVNKMD 127
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members. Length = 270 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 71/274 (25%), Positives = 118/274 (43%), Gaps = 25/274 (9%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV-----EYES 711
I H+DHGK+TL L + + I E+R +D+ E+ERGITI V +
Sbjct: 9 IAHIDHGKSTLADRLLEYTGAISEREMRE-QVLDSMDLERERGITIKAQAVRLNYKAKDG 67
Query: 712 ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIV 771
E +D PGH D+ + A +GA+L+ A G QT ++ LA + + I+
Sbjct: 68 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDL-EII 126
Query: 772 VFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSI 831
+NK D + V+ EI E++ G + I A G I
Sbjct: 127 PVINKIDLPSAD--PERVKKEIEEVI------GLDASEAI--LASAKTG--------IGI 168
Query: 832 KKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYK 891
+++L+ + +P P D P I D + RG V ++ G +K G++I +
Sbjct: 169 EEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTG 228
Query: 892 QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVK 925
+ + G+ K T + L+ VG ++ +K
Sbjct: 229 KEYEVDEVGVFTPKLTKTDELSAGEVGYIIAGIK 262
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 5e-13
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T I + K G D +E+ RGITI +A V
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTV--LAKKGGAEAKAYDQIDNAPEEKARGITINTAHV--E 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+E Y +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 70 YETANRHY--AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVG 127
Query: 130 VPKMI-FVNKMD 140
VP ++ F+NK+D
Sbjct: 128 VPYIVVFLNKVD 139
|
Length = 394 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 5e-13
Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 32/222 (14%)
Query: 268 LLNSICEYLPSPYDVDFKNNDYNINLNSNK-FVSLVFKIFHDPFLGSLSFIRIYSGFIKV 326
L +I +++P+P + ++ V ++ ++ ++G + RI+ G +K
Sbjct: 186 LFETILDHVPAPKG------------DLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKP 233
Query: 327 GD---LVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSE 383
L+ + +I ++L + +I +A GDIV I GL++ + GDT+C
Sbjct: 234 NQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDN 293
Query: 384 NIQLENIETPIPVISISIEPIFKND-----QE-------KLLNILQKFCKEDPSLLLSIN 431
L + P +S++ ND +E ++ + L K + + +L +
Sbjct: 294 PEALPALSVDEPTLSMTFSV---NDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEET 350
Query: 432 NNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKE 473
+ +SG GELHL I+++ + +E + ++S+P+V KE
Sbjct: 351 ESPDAFEVSGRGELHLSILIENMRRE-GFELQVSRPEVIIKE 391
|
Length = 603 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-13
Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 25/156 (16%)
Query: 639 LRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTK---VSSEIYGGEVRAFDTIDNAPEE 695
+RE+ +R+ + I HVDHGK+TLT +L + S G+ R DT +E
Sbjct: 9 IREIMDNPDQIRNMS--VIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDT---RADE 63
Query: 696 KERGITI-STS---HVEYESENKHYAH------VDCPGHADYIKNMITGAAQM-DGAILV 744
+ERGITI ST + E++ E+ +D PGH D+ + +T A ++ DGA++V
Sbjct: 64 QERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVDF-SSEVTAALRVTDGALVV 122
Query: 745 CSAVDGPMPQTREHILLARQVGVPNI--VVFLNKAD 778
V+G QT E +L RQ I V+F+NK D
Sbjct: 123 VDCVEGVCVQT-ETVL--RQALQERIRPVLFINKVD 155
|
Length = 836 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-12
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 9/145 (6%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIY-GGEVRA-----FDTIDNAPEEKERGITISTSHVEYE 710
I H D GKTTLT L I G V+ D EK+RGI++++S ++++
Sbjct: 18 ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFD 77
Query: 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
+ +D PGH D+ ++ +D A++V A G PQT + + R +P I
Sbjct: 78 YADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-I 136
Query: 771 VVFLNKADCV-QDK-ELLDLVEMEI 793
F+NK D +D ELLD +E E+
Sbjct: 137 FTFINKLDREGRDPLELLDEIEEEL 161
|
Length = 528 |
| >gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 2e-12
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILFY-----SGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
NIG I HVD GKTT T + + K E+ D +E+ RGITI +A
Sbjct: 83 NIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEI-------DAAPEERARGITINTA 135
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
+V E + + +D PGH D+ + +DGA++++ + G PQT+
Sbjct: 136 TVEYETENRHYAH----VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILL 191
Query: 125 SQKYKVPKM-IFVNKMDRI 142
+++ VP M +F+NK D++
Sbjct: 192 AKQVGVPNMVVFLNKQDQV 210
|
Length = 478 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGS--SHKIGEVHHGTT-----------ITDWMQQEQE 56
N+ I HVDAGK+T R+L+ G + ++ + D ++E+E
Sbjct: 9 NLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERE 68
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIII-------C 109
RG+TI A + KY IID PGH DF + D AV+++
Sbjct: 69 RGVTIDVA----HSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFE 124
Query: 110 ASSGIQPQTETVWFQSQKYKVPKMIF-VNKMDRIGANYNNCIIDIKKKFNCIV 161
A G+ QT F ++ + ++I VNKMD + +++ +++F IV
Sbjct: 125 AGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLV--SWD------EERFEEIV 169
|
Length = 428 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 657 IGHVDHGKTTLTAAL------TKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE 710
I H D GKTTLT L + + + + R T D EK+RGI++++S +++E
Sbjct: 8 ISHPDAGKTTLTEKLLLFGGAIQEAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE 67
Query: 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
+ +D PGH D+ ++ +D A++V A G PQTR+ + R G+P I
Sbjct: 68 YKGCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-I 126
Query: 771 VVFLNKAD-CVQDK-ELLDLVEMEI 793
+ F+NK D +D ELLD +E E+
Sbjct: 127 ITFINKLDREGRDPLELLDEIENEL 151
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein family | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 5e-12
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 43/179 (24%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTT-------------------ITDW 50
N+ +I HVDAGK+T T +L+ K+G V T + D
Sbjct: 1 NLVVIGHVDAGKSTLTGHLLY------KLGGVDKRTIEKYEKEAKEMGKESFKYAWVLDK 54
Query: 51 MQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICA 110
+++E+ERG+TI + KY IID PGH DF + D AV+++ A
Sbjct: 55 LKEERERGVTIDVG----LAKFETEKYRFTIIDAPGHRDFVKNMITGASQADVAVLVVSA 110
Query: 111 SSG-------IQPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYNNCIIDIKKKFNCIV 161
G QT ++ V ++I VNKMD + N++ +++++ I
Sbjct: 111 RKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWS------QERYDEIK 163
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 219 |
| >gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 7e-12
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 10 NIGIIAHVDAGKTTTTERI-----LFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
NIG I HVD GKTT T I ++ ++ D +E+ RGITI +A
Sbjct: 14 NIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQI-------DNAPEEKARGITINTA 66
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
V +E Y +D PGH D+ + +DGA++++ A+ G PQT
Sbjct: 67 HVE--YETENRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILL 122
Query: 125 SQKYKVPKMI-FVNKMDRI 142
+++ VP ++ F+NK D +
Sbjct: 123 ARQVGVPYIVVFLNKCDMV 141
|
This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation [Protein synthesis, Translation factors]. Length = 394 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 9e-12
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 31/223 (13%)
Query: 264 GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323
GIE +L +I + +P P +L+F +D + G ++ +R++ G
Sbjct: 167 GIEEILEAIVKRVPPPKGDPDA-----------PLKALIFDSHYDNYRGVVALVRVFEGT 215
Query: 324 IKVGDLV-YNSTKKVKEKIFRILRMFANSKKDINDAHF--GDI-VVIVGLKESS---TGD 376
IK GD + + ST K + + + + K G++ +I G+K+ S GD
Sbjct: 216 IKPGDKIRFMSTGKE----YEVDEVGVFTPKLTKTDELSAGEVGYIIAGIKDVSDVRVGD 271
Query: 377 TLCSLSENI--QLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNT 434
T+ + L + P++ + PI D E L + L+K D S L+ +
Sbjct: 272 TITHVKNPAKEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDAS--LTYEPES 329
Query: 435 GETILSG-----MGELHLEIIVDRILKENNIKTKISKPQVSYK 472
+ G +G LH+EII +R+ +E N+ + P V Y+
Sbjct: 330 SPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSVIYR 372
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-11
Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVR-AFDTIDNAPEEKERGITISTSHVEYE 710
G H+D GKTT T + T +I GEV T+D +EKERGITI+++
Sbjct: 14 GISAHIDAGKTTTTERILFYTGRIHKI--GEVHDGAATMDWMEQEKERGITITSAATTVF 71
Query: 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
+ +D PGH D+ + +DGA+ V AV G PQ+ A + VP I
Sbjct: 72 WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI 131
Query: 771 VVFLNKAD 778
F+NK D
Sbjct: 132 -AFVNKMD 138
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQ-----QEQERGITITSA 64
NIG I HVD GKTT T I K+ D+ +E+ERGITI +A
Sbjct: 14 NIGTIGHVDHGKTTLTAAIT-------KVLAERGLNQAKDYDSIDAAPEEKERGITINTA 66
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
V +E K Y +D PGH D+ + +DGA++++ A+ G PQT
Sbjct: 67 HVE--YETEKRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 122
Query: 125 SQKYKVPKMI-FVNKMD 140
+++ VP ++ F+NK+D
Sbjct: 123 ARQVGVPYLVVFLNKVD 139
|
Length = 394 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 61/188 (32%), Positives = 79/188 (42%), Gaps = 58/188 (30%)
Query: 617 KRGI---INTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG-------------TI-GH 659
K G+ IN +D E +++ E FG+ L S + TI GH
Sbjct: 204 KLGVMATINQSLDQETAELLA------EEFGHEVKLVSLLEDDDEEDLVPRPPVVTIMGH 257
Query: 660 VDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYESENKH 715
VDHGKT+L A+ T V++ GE GIT I VE
Sbjct: 258 VDHGKTSLLDAIRKTNVAA----GE--------------AGGITQHIGAYQVETN--GGK 297
Query: 716 YAHVDCPGHADYIKNMIT-----GAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
+D PGH + T GA D +LV +A DG MPQT E I A+ GVP I
Sbjct: 298 ITFLDTPGHEAF-----TAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-I 351
Query: 771 VVFLNKAD 778
+V +NK D
Sbjct: 352 IVAINKID 359
|
Length = 746 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-11
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 29/181 (16%)
Query: 315 SFIRIYSGFIKVG--------DLVYNSTKKVKEK-IFRILRMFANSKKDINDAHFGDIVV 365
+F R++SG + G + V + + EK I R + M + I D G+ V
Sbjct: 390 AFGRVFSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVG 449
Query: 366 IVG----LKESSTGDTLCSLSENIQLENIE----TPIPVISISIEPIFKNDQE--KLLNI 415
+VG L +S T ++ + NI + PV+ +++EP KN ++ KL+
Sbjct: 450 LVGVDQYLVKSGT------ITTSETAHNIRDMKYSVSPVVRVAVEP--KNPKDLPKLVEG 501
Query: 416 LQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKE-NNIKTKISKPQVSYKES 474
L++ K DP L++ +GE I++G GELH+EI + + + NI +S P VSY+E+
Sbjct: 502 LKRLAKSDP-LVVCTTEESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRET 560
Query: 475 I 475
+
Sbjct: 561 V 561
|
Length = 836 |
| >gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 6e-11
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 10 NIGIIAHVDAGKTTTTERI---LFYSGSSHKIG--EVHHGTTITDWMQQEQERGITITSA 64
N+G I HVD GKTT T I L G + + E+ D +E+ RGITI +A
Sbjct: 63 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEI-------DKAPEEKARGITIATA 115
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
V +E K Y +D PGH D+ + +DG ++++ A G PQT+
Sbjct: 116 HVE--YETAKRHYA--HVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILL 171
Query: 125 SQKYKVPKMI-FVNKMD 140
+++ VP ++ F+NK+D
Sbjct: 172 ARQVGVPSLVVFLNKVD 188
|
Length = 447 |
| >gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T I + + I D +E+ RGITI +A V
Sbjct: 4 NVGTIGHVDHGKTTLTAAITKVL-AKKGGAKAKKYDEI-DKAPEEKARGITINTAHV--E 59
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQKY 128
+E Y +D PGH D+ + +DGA++++ A+ G PQT E + Q
Sbjct: 60 YETANRHY--AHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ-V 116
Query: 129 KVPKMI-FVNKMD 140
VP ++ F+NK D
Sbjct: 117 GVPYIVVFLNKAD 129
|
EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 16 HVDAGKTTTTERILFYSGS--SHKIGEVH----HGTT--------ITDWMQQEQERGITI 61
VD GK+T R+L+ S S ++ + GT + D +Q E+E+GITI
Sbjct: 7 SVDDGKSTLIGRLLYDSKSIFEDQLAALERSKSSGTQGEKLDLALLVDGLQAEREQGITI 66
Query: 62 TSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
A ++ K K++I DTPGH +T + D A++++ A G+ QT
Sbjct: 67 DVAY--RYFSTPKRKFII--ADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRH 122
Query: 122 WFQSQKYKVPKMIF-VNKMDRIG 143
+ + + ++ VNKMD +
Sbjct: 123 SYIASLLGIRHVVVAVNKMDLVD 145
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|239669 cd03698, eRF3_II_like, eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 1e-10
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 852 PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEG 911
PF +PI D + GTVV+GK+E G ++ G+ + ++ K+++ + I + + +D
Sbjct: 1 PFRLPISDKYK-DQGGTVVSGKVESGSIQKGDTLLVMPSKESV--EVKSIYVDDEEVDYA 57
Query: 912 LAGENVGILLRSVKREEVERGQVLA 936
+AGENV + L+ + E++ G VL
Sbjct: 58 VAGENVRLKLKGIDEEDISPGDVLC 82
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils. This group also contains proteins similar to S. cerevisiae Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 83 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 19/158 (12%)
Query: 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTI-----------DNAPEEKER 698
+ T I H D GKTT+T + +YGG ++ + D EK+R
Sbjct: 10 KRRTFAIISHPDAGKTTITEKVL-----LYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQR 64
Query: 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
GI+I+TS +++ + +D PGH D+ ++ +D ++V A G +TR+
Sbjct: 65 GISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKL 124
Query: 759 ILLARQVGVPNIVVFLNKAD--CVQDKELLDLVEMEIR 794
+ + R P I F+NK D ELLD VE E++
Sbjct: 125 MEVTRLRDTP-IFTFMNKLDRDIRDPLELLDEVENELK 161
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 3e-10
Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 33/224 (14%)
Query: 264 GIEFLLNSICEYLPSP-YDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSG 322
GIE +L +I E +P P D D +L+F ++D +LG + +RI+ G
Sbjct: 173 GIEDVLEAIVEKIPPPKGDPD------------APLKALIFDSWYDNYLGVVVLVRIFDG 220
Query: 323 FIKVGDLVY-NSTKKVKEKIFRILRM--FANSKKDINDAHFGDI-VVIVGLKESS---TG 375
+K GD + ST K + + + F +++ G++ +I G+K+ G
Sbjct: 221 TLKKGDKIRMMSTGKE----YEVDEVGIFTPKMVKVDELKAGEVGYIIAGIKDVRDARVG 276
Query: 376 DTLCSLSENIQ--LENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNN 433
DT+ S L + P++ + P+ +D E L + L+K D S L+
Sbjct: 277 DTITLASNPATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDAS--LTYEPE 334
Query: 434 TGETILSG-----MGELHLEIIVDRILKENNIKTKISKPQVSYK 472
T + + G +G LH+EII +R+ +E ++ + P V YK
Sbjct: 335 TSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYK 378
|
Length = 603 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRA---FDTIDNAPEEKERGITISTSHVEYESEN 713
GH+ HGKT+L L + + + D +E+ERGI+I ++ + E+
Sbjct: 6 AGHLHHGKTSLLDMLIEQTHKRTPSVKLGWKPLRYTDTRKDEQERGISIKSNPISLVLED 65
Query: 714 -KHYAHV----DCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVP 768
K +++ D PGH +++ + DG +LV V+G T I A Q G+P
Sbjct: 66 SKGKSYLINIIDTPGHVNFMDEVAAALRLCDGVVLVVDVVEGLTSVTERLIRHAIQEGLP 125
Query: 769 NIVVFLNKAD 778
+V+ +NK D
Sbjct: 126 -MVLVINKID 134
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-10
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNST--KKVKEKIFRILRMFANSKKDI 355
+LVFK+F D G+++ R+ SG +K GD V VK K+ + R K ++
Sbjct: 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRF----KGEV 56
Query: 356 NDAHFGDIVVIVGLKES--STGDTLCS 380
++A GDIV IV + GDTL
Sbjct: 57 DEAVAGDIVGIVLKDKDDIKIGDTLTD 83
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. Length = 83 |
| >gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 6e-10
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 19/138 (13%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQ-----QEQERGITITSA 64
N+G I HVD GKTT T I K+ G + Q +E+ RGITI ++
Sbjct: 14 NVGTIGHVDHGKTTLTAAIT-------KVLAKKGGGEAKAYDQIDNAPEEKARGITINTS 66
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWF 123
V +E Y +D PGH D+ + +DGA++++ A+ G PQT E +
Sbjct: 67 HVE--YETANRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL 122
Query: 124 QSQKYKVPKMI-FVNKMD 140
Q VP ++ F+NK D
Sbjct: 123 ARQ-VGVPYIVVFLNKCD 139
|
Length = 396 |
| >gnl|CDD|177010 CHL00071, tufA, elongation factor Tu | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 6e-10
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 10 NIGIIAHVDAGKTTTTERI-----LFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
NIG I HVD GKTT T I + K E+ D +E+ RGITI +A
Sbjct: 14 NIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEI-------DSAPEEKARGITINTA 66
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
V +E Y +D PGH D+ + +DGA++++ A+ G PQT+
Sbjct: 67 HVE--YETENRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILL 122
Query: 125 SQKYKVPKMI-FVNKMDRI 142
+++ VP ++ F+NK D++
Sbjct: 123 AKQVGVPNIVVFLNKEDQV 141
|
Length = 409 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 7e-10
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 24/132 (18%)
Query: 13 IIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGIT--ITSASVSIFW 70
++ HVD GKTT ++I T + + GIT I + V I
Sbjct: 5 VMGHVDHGKTTLLDKI--------------RKTNV----AAGEAGGITQHIGAYQVPIDV 46
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV 130
++ I IDTPGH FT R V D A++++ A G+ PQT ++ V
Sbjct: 47 KIPG----ITFIDTPGHEAFTNMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAANV 102
Query: 131 PKMIFVNKMDRI 142
P ++ +NK+D+
Sbjct: 103 PIIVAINKIDKP 114
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-10
Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 33/163 (20%)
Query: 639 LRELFGYSTDLRSNTKGTIGHVDHGKTTLT----AALTKVSSEIYGGEVRAFDTIDNAPE 694
LR + ++R+ + I HVDHGK+TLT AA ++ E+ G+VR DT +
Sbjct: 9 LRRIMDKKHNIRNMS--VIAHVDHGKSTLTDSLVAAAGIIAQEV-AGDVRMTDTRA---D 62
Query: 695 EKERGITI--------------STSHVEYESENKHYA--HVDCPGHADYIKNMITGAAQM 738
E ERGITI S + E + Y +D PGH D+ + +T A ++
Sbjct: 63 EAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDF-SSEVTAALRI 121
Query: 739 -DGAILVCSAVDGPMPQTREHILLARQVGVPNI--VVFLNKAD 778
DGA++V ++G QT E +L RQ I V+ +NK D
Sbjct: 122 TDGALVVVDCIEGVCVQT-ETVL--RQALGERIRPVLTVNKMD 161
|
Length = 843 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 8e-10
Identities = 78/280 (27%), Positives = 125/280 (44%), Gaps = 37/280 (13%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE----YESE 712
I H+DHGK+TL L +++ + E+RA +D+ E+ERGITI V +
Sbjct: 15 IAHIDHGKSTLADRLLELTGGLSEREMRA-QVLDSMDIERERGITIKAQAVRLNYKAKDG 73
Query: 713 NKHYAH-VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIV 771
+ + +D PGH D+ + A +GA+LV A G QT ++ LA + + I+
Sbjct: 74 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL-EII 132
Query: 772 VFLNKADCVQDKELL-----DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQL 826
LNK D L + V+ EI E + + V+ SA +
Sbjct: 133 PVLNKID-------LPAADPERVKQEI-----EDIIGIDASDAVLVSA--------KTGI 172
Query: 827 GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886
G I+ +L+ + IP P D P I D + + G VV +I G +K G++I
Sbjct: 173 G---IEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIR 229
Query: 887 IVGYKQTIKTTITGIEMFKKTLDEGL-AGENVGILLRSVK 925
++ + + GI K + L AGE VG ++ +K
Sbjct: 230 MMSTGKEYEVDEVGIFTPKMVKVDELKAGE-VGYIIAGIK 268
|
Length = 603 |
| >gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-09
Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFD---TIDNAPEEKERGITISTSHVE 708
G + H+D GKTT T + T S +I GEV D T+D +E+ERGITI+++
Sbjct: 12 GIMAHIDAGKTTTTERILYYTGKSHKI--GEVH--DGAATMDWMEQEQERGITITSAATT 67
Query: 709 YESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVP 768
+ +D PGH D+ + +DGA+ V AV G PQ+ A + GVP
Sbjct: 68 CFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP 127
Query: 769 NIVVFLNKAD 778
I VF+NK D
Sbjct: 128 RI-VFVNKMD 136
|
Length = 691 |
| >gnl|CDD|239763 cd04096, eEF2_snRNP_like_C, eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 1e-09
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIIN--TIIDHENFKIINSYIPLRELFGYSTDLR 650
EPI VE+ P + LG V ++K+RG + + I +Y+P+ E FG+ TDLR
Sbjct: 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLR 60
Query: 651 SNTKG 655
S T G
Sbjct: 61 SATSG 65
|
Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. Length = 80 |
| >gnl|CDD|239662 cd03691, BipA_TypA_II, BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 1e-09
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 301 LVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFA---NSKKDIND 357
LV + +D ++G ++ RI+ G +KVG V + K + +I ++F + ++ +
Sbjct: 4 LVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEE 63
Query: 358 AHFGDIVVIVGLKESSTGDTLCS 380
A GDIV I G+++ + GDT+C
Sbjct: 64 AEAGDIVAIAGIEDITIGDTICD 86
|
BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. Length = 86 |
| >gnl|CDD|217388 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2 | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 312 GSLSFIRIYSGFIKVGDLVYN--STKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGL 369
G+++ R+ SG +K GD V + K ++ + + ++ + A+ G I+ +GL
Sbjct: 1 GTVATGRVESGTLKKGDKVVIGPNGTGKKGRVTSLEMFHGDLREAVAGANAGIILAGIGL 60
Query: 370 KESSTGDTLC 379
K+ GDTL
Sbjct: 61 KDIKRGDTLT 70
|
Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain. Length = 70 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW 70
+ I+ HVD GKT+ + I K+ + G GIT + +
Sbjct: 90 VTIMGHVDHGKTSLLDSI-----RKTKVAQGEAG-------------GITQHIGAYHVEN 131
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV 130
E K MI +DTPGH FT R +V D V+++ A G+ PQT ++ V
Sbjct: 132 EDGK---MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANV 188
Query: 131 PKMIFVNKMDRIGAN 145
P ++ +NK+D+ AN
Sbjct: 189 PIIVAINKIDKPEAN 203
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW 70
+ I+ HVD GKTT ++I T I Q++ GIT + + +
Sbjct: 247 VTILGHVDHGKTTLLDKI--------------RKTQIA----QKEAGGITQKIGAYEVEF 288
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV 130
E I +DTPGH F+ R V D A++II A G++PQT Q V
Sbjct: 289 EYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANV 348
Query: 131 PKMIFVNKMDRIGAN 145
P ++ +NK+D+ AN
Sbjct: 349 PIIVAINKIDKANAN 363
|
Length = 742 |
| >gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 3e-09
Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQ-----QEQERGITITSA 64
N+G I HVD GKTT T I G + Q +E+ RGITI +A
Sbjct: 14 NVGTIGHVDHGKTTLTAAITKVLAK-------KGGAEAKAYDQIDKAPEEKARGITINTA 66
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWF 123
V +E K Y +D PGH D+ + +DGA++++ A+ G PQT E +
Sbjct: 67 HVE--YETEKRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL 122
Query: 124 QSQKYKVPKMI-FVNKMD 140
Q VP ++ F+NK D
Sbjct: 123 ARQ-VGVPYIVVFLNKCD 139
|
Length = 396 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITI--STSHVEYESENK 714
I H+DHGK+TL L +++ + E++ +D+ E+ERGITI + Y++++
Sbjct: 6 IAHIDHGKSTLADRLLELTGTVSEREMKE-QVLDSMDLERERGITIKAQAVRLFYKAKDG 64
Query: 715 H---YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIV 771
+D PGH D+ + A +GA+LV A G QT + LA + + I+
Sbjct: 65 EEYLLNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTLANFYLALENNL-EII 123
Query: 772 VFLNKADCV 780
+NK D
Sbjct: 124 PVINKIDLP 132
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|238841 cd01684, Tet_like_IV, EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-09
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 469 VSYKESIKKIVTQEGKYIKQSGGKGQY--GHVVIRIEPISLENKENFIFKSEIIGGSIPK 526
V YKE G+ ++ V +R+EP L ++SE+ GS+P+
Sbjct: 1 VIYKERPL----GTGEGVEHIEVPPNPFWATVGLRVEP--LPRGSGLQYESEVSLGSLPR 54
Query: 527 EFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKK 586
F A+E+ + + G+ G+ V KV L G +HS S+ F+ L+ ALKK
Sbjct: 55 SFQNAVEETVRETLQQGL-YGWEVTDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKK 113
Query: 587 AN 588
A
Sbjct: 114 AG 115
|
RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue. Length = 115 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-09
Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 20/179 (11%)
Query: 314 LSFIRIYSGFIKVGDLV------YNSTKK----VKEKIFRILRMFANSKKDINDAHFGDI 363
+F R++SG + G V Y +K VK + R + ++ + D G+
Sbjct: 393 FAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVK-SVQRTVIWMGKKQESVEDVPCGNT 451
Query: 364 VVIVGLKESSTGDTLCSLSENIQLENIE----TPIPVISISIEPIFKNDQEKLLNILQKF 419
V +VGL + T + + + + I+ + PV+ ++++ +D KL+ L++
Sbjct: 452 VAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVSPVVRVAVQCKNASDLPKLVEGLKRL 511
Query: 420 CKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKE---NNIKTKISKPQVSYKESI 475
K DP + +I +GE I++G GELHLEI + + L++ + K+S P VS++E++
Sbjct: 512 AKSDPMVQCTIEE-SGEHIIAGAGELHLEICL-KDLQDDFMGGAEIKVSDPVVSFRETV 568
|
Length = 843 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 7e-09
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 13 IIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGIT--ITSASVSIFW 70
I+ HVD GKTT ++I T + + GIT I + V +
Sbjct: 10 IMGHVDHGKTTLLDKI--------------RKTNV----AAGEAGGITQHIGAYQVPLDV 51
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV 130
I IDTPGH FT R V D A++++ A G+ PQT ++ V
Sbjct: 52 IKIP---GITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGV 108
Query: 131 PKMIFVNKMDRIGAN 145
P ++ +NK+D+ AN
Sbjct: 109 PIVVAINKIDKPEAN 123
|
Length = 509 |
| >gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 25/158 (15%)
Query: 10 NIGIIAHVDAGKTTTTERILF------------YSGSSHKIGEVHHGTT-ITDWMQQEQE 56
N+ +I HVD+GK+TTT +++ + + ++G+ + D ++ E+E
Sbjct: 9 NLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 68
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-- 114
RGITI A W+ KY IID PGH DF + D A++++ +++G
Sbjct: 69 RGITIDIA----LWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFE 124
Query: 115 -----QPQTETVWFQSQKYKVPKMIF-VNKMDRIGANY 146
QT + V +MI +NKMD NY
Sbjct: 125 AGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162
|
Length = 446 |
| >gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 1e-08
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 26/180 (14%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHK---------IGEVHHGTTITDW----MQQEQE 56
NI +I HVD+GK+TTT +++ G K E++ + W ++ E+E
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 68
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG--- 113
RGITI A W+ KY +ID PGH DF + D AV+II +++G
Sbjct: 69 RGITIDIA----LWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFE 124
Query: 114 ----IQPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYNNCIID-IKKKFNCIVLPINFN 167
QT + V +MI NKMD Y+ D I K+ + + + +N
Sbjct: 125 AGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYN 184
|
Length = 447 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 27/173 (15%), Positives = 60/173 (34%), Gaps = 31/173 (17%)
Query: 12 GIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWE 71
++ GK++ +L G GTT E
Sbjct: 1 VVVGRGGVGKSSLLNALL---GGEVGEVSDVPGTTR----------------DPDVYVKE 41
Query: 72 VNKFKYMINIIDTPGHVDF-----TIEVERSLRVLDGAVIIICASSG--IQPQTETVWFQ 124
++K K + ++DTPG +F LR D ++++ ++ + + +
Sbjct: 42 LDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRR 101
Query: 125 SQKYKVPKMIFVNKMDRIGAN---YNNCIIDIKKKFNCIVLPIN--FNIGIEE 172
+K +P ++ NK+D + + ++ K V ++ G++E
Sbjct: 102 LRKEGIPIILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDE 154
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 16 HVDAGKTTTTERILFYSGS--SHKIGEVH-----HGTT--------ITDWMQQEQERGIT 60
VD GK+T R+L+ + + ++ + GT + D ++ E+E+GIT
Sbjct: 14 SVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGIT 73
Query: 61 ITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET 120
I A ++ K K++I DTPGH +T + D A++++ A G+ QT
Sbjct: 74 IDVAY--RYFSTEKRKFII--ADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRR 129
Query: 121 VWFQSQKYKVPKMIF-VNKMD 140
F + + ++ VNKMD
Sbjct: 130 HSFIASLLGIRHVVVAVNKMD 150
|
Length = 431 |
| >gnl|CDD|239756 cd04089, eRF3_II, eRF3_II: domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-08
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 852 PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEG 911
P +PI D + GTVV GK+E G +K G+++ ++ K ++ + I +
Sbjct: 1 PLRLPIIDKYK--DMGTVVLGKVESGTIKKGDKLLVMPNKTQVE--VLSIYNEDVEVRYA 56
Query: 912 LAGENVGILLRSVKREEVERGQVL 935
GENV + L+ ++ E++ G VL
Sbjct: 57 RPGENVRLRLKGIEEEDISPGFVL 80
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils. Length = 82 |
| >gnl|CDD|239665 cd03694, GTPBP_II, Domain II of the GP-1 family of GTPase | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 7e-08
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYK--QTIKTTITGIEMFKKTLDE 910
I++++S+ G GTVV G + +G+++ G+ + + + T+ I + +
Sbjct: 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRV 60
Query: 911 GLAGENVGILLRSVKREEVERGQVLA 936
AG++ + L+ + R + +G VL
Sbjct: 61 VRAGQSASLALKKIDRSLLRKGMVLV 86
|
This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. Length = 87 |
| >gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 50/154 (32%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTS----HVEYESE 712
+GHVDHGKTTL + K ++I E GIT EY+ E
Sbjct: 250 LGHVDHGKTTLLDKIRK--TQIAQKEAG--------------GITQKIGAYEVEFEYKDE 293
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
N+ +D PGH + GA D AIL+ +A DG PQT E I + VP I+V
Sbjct: 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIV 352
Query: 773 FLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806
+NK DK + I++ L +Y+ E
Sbjct: 353 AINKI----DKANANTE--RIKQQLAKYNLIPEK 380
|
Length = 742 |
| >gnl|CDD|239666 cd03695, CysN_NodQ_II, CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 1e-07
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 853 FLMPIEDV--FSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDE 910
F P++ V + RG G I G ++ G+E+ + + + IE F LDE
Sbjct: 1 FRFPVQYVIRPNADFRG--YAGTIASGSIRVGDEVVV--LPSGKTSRVKSIETFDGELDE 56
Query: 911 GLAGENVGILLRSVKRE-EVERGQVLAK 937
AGE+V + L + E +V RG V+
Sbjct: 57 AGAGESVTLTL---EDEIDVSRGDVIVA 81
|
Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which shows no aa sequence similarity to CysN or NodQ. CysN and the N-terminal portion of NodQ show similarity to GTPases involved in translation, in particular, EF-Tu and EF-1alpha. Length = 81 |
| >gnl|CDD|239681 cd03710, BipA_TypA_C, BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2 | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 7e-07
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 13/79 (16%)
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHEN------FKIINSYIPLRELFGYS 646
EPI ++ +++P E+ G V+ + K++G + + N FK IP R L G+
Sbjct: 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFK-----IPSRGLIGFR 55
Query: 647 TDLRSNTKGT--IGHVDHG 663
++ ++T+GT + HV G
Sbjct: 56 SEFLTDTRGTGIMNHVFDG 74
|
A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. Length = 79 |
| >gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTTITDWMQQEQERGITITSASVSI 68
+ ++ HVD GKTT ++I + + + G + H G T E + +
Sbjct: 7 VSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGAT---------EIPMDVIEGICGD 57
Query: 69 FWEVNKFKYMIN---IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQS 125
+ K + I IDTPGH FT +R + D A++I+ + G +PQT+
Sbjct: 58 LLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNIL 117
Query: 126 QKYKVPKMIFVNKMDRI 142
+ YK P ++ NK+DRI
Sbjct: 118 RMYKTPFVVAANKIDRI 134
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. Length = 590 |
| >gnl|CDD|238842 cd01693, mtEFG2_like_IV, mtEF-G2 domain IV | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIF-KSEIIGGSIPKE 527
++Y+E+I + K G K V + + P + + + + K
Sbjct: 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSAIEVLLKR 60
Query: 528 FIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAI-ALKDALKK 586
A+E G+ + + G +LG+PV + + L + + S +A A ++ ALK
Sbjct: 61 IQEAVENGVHSALLQGPLLGFPVQDVAITLHSLTIGPGTSP--TMISACASQCVQKALKS 118
Query: 587 A 587
A
Sbjct: 119 A 119
|
This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. Length = 120 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 591 ILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFK------IINSYIPLRELFG 644
+LEP+ V++ P + +G + +N++RG++ E + I +Y+P+ E FG
Sbjct: 718 LLEPMFLVDITAPEDAMGGIYSVLNRRRGVVI----GEEQRPGTPLSNIKAYLPVAESFG 773
Query: 645 YSTDLRSNTKG 655
++ LR+ T G
Sbjct: 774 FTAALRAATSG 784
|
Length = 836 |
| >gnl|CDD|238771 cd01513, Translation_factor_III, Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 22/97 (22%)
Query: 942 KSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-----------ENV 990
++ + F E+Y+L E P GYKP T V G +
Sbjct: 1 QAVDKFVAEIYVLDHPE-----PLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPP 55
Query: 991 EMVLPGDNIKLNVTLLSSIAIEI------GLRFAIRE 1021
E + G+ + V L +A+E G RFA+R+
Sbjct: 56 EFLKSGERGIVEVELQKPVALETFSENQEGGRFALRD 92
|
Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the same fold (although they are not completely superimposable), the double split beta-alpha-beta fold. This fold is observed in a large number of ribonucleotide binding proteins and is also referred to as the ribonucleoprotein (RNP) or RNA recognition (RRM) motif. This domain III is found in several elongation factors, as well as in peptide chain release factors and in GT-1 family of GTPase (GTPBP1). Length = 102 |
| >gnl|CDD|239682 cd03711, Tet_C, Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-06
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSN 652
EP ++ E+ +P + LG + D+ K + + IP+ Y ++L S
Sbjct: 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSY 60
Query: 653 TKG 655
T G
Sbjct: 61 THG 63
|
This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. Length = 78 |
| >gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 3e-06
Identities = 50/147 (34%), Positives = 71/147 (48%), Gaps = 19/147 (12%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIY-GGEVRA-----FDTIDNAPEEKERGITISTSHVEYE 710
I H D GKTTLT L I G V+ T D EK+RGI++++S +++
Sbjct: 16 ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFP 75
Query: 711 SENKHYAHVDCPGHAD-----YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV 765
+ +D PGH D Y T A +D A++V A G PQTR+ + + R
Sbjct: 76 YRDCLINLLDTPGHEDFSEDTY----RTLTA-VDSALMVIDAAKGVEPQTRKLMEVCRLR 130
Query: 766 GVPNIVVFLNKAD-CVQDK-ELLDLVE 790
P I F+NK D ++ ELLD +E
Sbjct: 131 DTP-IFTFINKLDRDGREPLELLDEIE 156
|
Length = 526 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 21/157 (13%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI-------- 61
N+G++ HVD+GKT+ + L S T D Q QERGIT+
Sbjct: 2 NVGLLGHVDSGKTSLA-KALSEIAS----------TAAFDKNPQSQERGITLDLGFSSFE 50
Query: 62 --TSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE 119
+ Y I ++D PGH + +++D ++++ A GIQ QT
Sbjct: 51 VDKPKHLEDNENPQIENYQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDAKKGIQTQTA 110
Query: 120 TVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKK 156
+ P ++ +NK+D I I+ KK
Sbjct: 111 ECLVIGELLCKPLIVVLNKIDLIPEEERKRKIEKMKK 147
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
| >gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 4e-06
Identities = 50/139 (35%), Positives = 70/139 (50%), Gaps = 29/139 (20%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFD---TIDNAPEEKERGITISTSHVE 708
G + H+D GKTT T + T V+ +I GEV D T+D +E+ERGITI TS
Sbjct: 14 GIMAHIDAGKTTTTERILFYTGVNHKI--GEVH--DGAATMDWMEQEQERGITI-TSAAT 68
Query: 709 YESENKHYAHV-DCPGHADYI----KNMITGAAQMDGAILVCSAVDGPMPQT----REHI 759
H ++ D PGH D+ +++ +DGA+ V AV G PQ+ R+
Sbjct: 69 TCFWKDHRINIIDTPGHVDFTIEVERSL----RVLDGAVAVFDAVGGVEPQSETVWRQ-- 122
Query: 760 LLARQVGVPNIVVFLNKAD 778
A + VP I F+NK D
Sbjct: 123 --ADKYKVPRI-AFVNKMD 138
|
Length = 693 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-06
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 587 ANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIIN--SYIPLRELFG 644
A +LEP+ VE+ P + LG + +N+KRG + + + N +Y+P+ E FG
Sbjct: 721 AKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFG 780
Query: 645 YSTDLRSNTKG 655
+S LR+ T G
Sbjct: 781 FSGTLRAATSG 791
|
Length = 843 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 4e-06
Identities = 49/218 (22%), Positives = 101/218 (46%), Gaps = 24/218 (11%)
Query: 268 LLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVG 327
L +I +++P+P DVD D + + ++ ++ ++G + RI G +K
Sbjct: 186 LYQAIVDHVPAP-DVDL---DGPFQMQ-------ISQLDYNSYVGVIGIGRIKRGKVKPN 234
Query: 328 D---LVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSEN 384
++ + K K+ ++L + + + A GDIV I GL E + DT+C
Sbjct: 235 QQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNV 294
Query: 385 IQLENIETPIPVIS----ISIEPIFKNDQEKLLN--ILQKFCKE---DPSLLLSINNNTG 435
L + P +S ++ P + + + + IL + KE + +L + +
Sbjct: 295 EALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDAD 354
Query: 436 ETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKE 473
+SG GELHL ++++ + +E + +S+P+V ++E
Sbjct: 355 AFRVSGRGELHLSVLIENMRRE-GFELAVSRPKVIFRE 391
|
Length = 607 |
| >gnl|CDD|235195 PRK04004, PRK04004, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 4e-06
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 42/146 (28%)
Query: 16 HVDAGKTTTTERILFYSGSSHKIGEV-----HHGTTITDWMQQEQERGITITSASVSIFW 70
HVD GKTT ++I G++ E H G T I + +
Sbjct: 14 HVDHGKTTLLDKI---RGTAVAAKEAGGITQHIGATEVPID--------VIEKIAGPL-- 60
Query: 71 EVNKFKYMINI-----IDTPGHVDFTIEVERSLR-----VLDGAVIIICASSGIQPQTET 120
+ I IDTPGH FT +LR + D A++++ + G QPQT
Sbjct: 61 -KKPLPIKLKIPGLLFIDTPGHEAFT-----NLRKRGGALADIAILVVDINEGFQPQTI- 113
Query: 121 VWFQS----QKYKVPKMIFVNKMDRI 142
++ ++ K P ++ NK+DRI
Sbjct: 114 ---EAINILKRRKTPFVVAANKIDRI 136
|
Length = 586 |
| >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 7e-06
Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 20/134 (14%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
I HVD GKTT + + +G + D + +E++RG+TI
Sbjct: 2 IIATAGHVDHGKTTLLKAL---TGIA------------ADRLPEEKKRGMTIDLGFAYFP 46
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
Y + ID PGH F +D A++++ A G+ QT
Sbjct: 47 LP----DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLG 102
Query: 130 VPKMIFV-NKMDRI 142
+P I V K DR+
Sbjct: 103 IPHTIVVITKADRV 116
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 20/110 (18%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTI-TDWMQQEQERGITITSASVSIF 69
IG H+D GKTT + + T I TD + +E++RGITI +
Sbjct: 2 IGTAGHIDHGKTTLIKAL----------------TGIETDRLPEEKKRGITIDLGFAYLD 45
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE 119
K + ID PGH F + +D ++++ A GI PQT
Sbjct: 46 LPDGK---RLGFIDVPGHEKFVKNMLAGAGGIDAVLLVVAADEGIMPQTR 92
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-06
Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 26/140 (18%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYESE 712
+G + GK+TL L + E + G T T+ +E + +
Sbjct: 5 VIVGDPNVGKSTLLNRLLGN---------------KISITEYKPGTTRNYVTTVIEEDGK 49
Query: 713 NKHYAHVDCPGHADYIK------NMITGAAQM-DGAILVCSAVDGPMPQTREHILLARQV 765
+ +D G DY + + ++ D ILV + QT+E I A
Sbjct: 50 TYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES- 108
Query: 766 GVPNIVVFLNKADCVQDKEL 785
GVP I++ NK D K
Sbjct: 109 GVP-IILVGNKIDLRDAKLK 127
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 17 VDAGKTTTTERILFYSGSSHKIGEVH----------HGTT--------ITDWMQQEQERG 58
VD GK+T R+L + I E HGT + D +Q E+E+G
Sbjct: 9 VDDGKSTLIGRLLHDTKQ---IYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQG 65
Query: 59 ITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
ITI A ++ +K K++ + DTPGH +T + D AV+++ A G+ QT
Sbjct: 66 ITIDVAYR--YFSTDKRKFI--VADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT 121
Query: 119 ETVWFQSQKYKVPKMIF-VNKMDRIGANYNNCIID-IKKKFNCIVLPINF 166
+ + + ++ VNKMD + Y+ + + IKK + + F
Sbjct: 122 RRHSYIASLLGIRHVVLAVNKMDLVD--YDEEVFENIKKDYLAFAEQLGF 169
|
Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406 |
| >gnl|CDD|239661 cd03690, Tet_II, Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-05
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 295 SNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVY---NSTKKVKEKIFRILRMFANS 351
++ VFKI D L+++R+YSG +++ D V K+ E LR+F N
Sbjct: 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNREEKIKITE-----LRVFNNG 55
Query: 352 K-KDINDAHFGDIVVIVGLKESSTGDTL 378
+ + GDI ++ GLK GD L
Sbjct: 56 EVVTADTVTAGDIAILTGLKGLRVGDVL 83
|
This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. Length = 85 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 2e-05
Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 33/224 (14%)
Query: 264 GIEFLLNSICEYLPSP-YDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSG 322
GIE +L +I E +P P D D +L+F ++D + G + +R+ G
Sbjct: 171 GIEEVLEAIVERIPPPKGDPD------------APLKALIFDSWYDNYRGVVVLVRVVDG 218
Query: 323 FIKVGDLVY-NSTKKVKEKIFRILRM--FANSKKDINDAHFGDI-VVIVGLKE---SSTG 375
+K GD + ST K + + + F +++ G++ +I G+K+ + G
Sbjct: 219 TLKKGDKIKMMSTGKE----YEVDEVGVFTPKMVPVDELSAGEVGYIIAGIKDVRDARVG 274
Query: 376 DTLCSLSENIQ--LENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNN 433
DT+ + L + P++ + P+ +D E L + L+K D S L+
Sbjct: 275 DTITLAKNPAEEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDAS--LTYEPE 332
Query: 434 TGETILSG-----MGELHLEIIVDRILKENNIKTKISKPQVSYK 472
T + + G +G LH+EII +R+ +E ++ + P V Y+
Sbjct: 333 TSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYE 376
|
Length = 600 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 719 VDCPG-------HADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQVGVPNI 770
VD PG H + ++ + + D I V SA D P+ ++ RE + + I
Sbjct: 51 VDTPGLNSTIEHHTEITESFL---PRADAVIFVLSA-DQPLTESEREFLKEILKWSGKKI 106
Query: 771 VVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN 824
LNK D + ++EL +++E RE L + G +I SA ALE +
Sbjct: 107 FFVLNKIDLLSEEELEEVLE-YSREELGVLELGGGEPRIFPVSAKEALEARLQG 159
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 27/156 (17%)
Query: 657 IGHVDHGKTTLTAALTK---VSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
+G GK++L AL G R D ++ + + +
Sbjct: 3 VGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVL----------- 51
Query: 714 KHYAHVDCPGHADYIKNMITGAAQM-----DGAILVCSAVDGPMP--QTREHILLARQVG 766
VD PG ++ A++ D +LV + D + R+ G
Sbjct: 52 -----VDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEG 106
Query: 767 VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802
+P I++ NK D ++++E+ +L+ +E +
Sbjct: 107 IP-IILVGNKIDLLEEREVEELLRLEELAKILGVPV 141
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|239765 cd04098, eEF2_C_snRNP, eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGII--NTIIDHENFKIINSYIPLRELFGYSTDLR 650
EPI +VE+ P++ + V ++++RG + +T I + ++IP+ E FG+ TDLR
Sbjct: 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLR 60
Query: 651 SNTKGT---IGHVDH 662
+T+G DH
Sbjct: 61 VHTQGQAFCQSVFDH 75
|
This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. Length = 80 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 14/132 (10%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQE-RGITITSASVSIF 69
I +I V AGKTT + S K IT+ +G T+ ++
Sbjct: 13 IVVIGPVGAGKTTFVRAL------SDKP------LVITEADASSVSGKGKRPTTVAMDFG 60
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQKY 128
+++ TPG F E R GA++++ +S I E + F + +
Sbjct: 61 SIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRN 120
Query: 129 KVPKMIFVNKMD 140
+P ++ +NK D
Sbjct: 121 PIPVVVAINKQD 132
|
Length = 187 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-05
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 78 MINIIDTPGHVDFTIEVERSLR-----VLDGAVIIICASSGIQPQTETVWFQSQKYKVPK 132
I +DTPGH FT ++R V D V+++ A G+ PQT ++ VP
Sbjct: 297 KITFLDTPGHEAFT-----AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPI 351
Query: 133 MIFVNKMDRIGAN 145
++ +NK+D+ GAN
Sbjct: 352 IVAINKIDKPGAN 364
|
Length = 746 |
| >gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 43/182 (23%), Positives = 67/182 (36%), Gaps = 26/182 (14%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
IG H+D GKTT + L +TD + +E++RGITI F
Sbjct: 2 IIGTAGHIDHGKTTLLK-ALTG--------------GVTDRLPEEKKRGITIDLG----F 42
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+ ++ ID PGH DF + L +D A++++ A G+ QT
Sbjct: 43 YYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLG 102
Query: 130 VPKMIFV-NKMDRIGANYNNCIID------IKKKFNCIVLPINFNIGIEENYEGIVDIIN 182
+ I V K DR+ I GIEE ++D++
Sbjct: 103 IKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162
Query: 183 KK 184
+
Sbjct: 163 EI 164
|
Length = 447 |
| >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 5e-05
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 26/146 (17%)
Query: 17 VDAGKTTTTERILFYSGSSHKIGEVH----------HGTT--------ITDWMQQEQERG 58
VD GK+T R+L+ S I E GT + D + E+E+G
Sbjct: 33 VDDGKSTLIGRLLY---DSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQG 89
Query: 59 ITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
ITI A ++ K K++ + DTPGH +T + D A+I++ A G+ QT
Sbjct: 90 ITIDVAYR--YFATPKRKFI--VADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT 145
Query: 119 ETVWFQSQKYKVPKMIF-VNKMDRIG 143
F + + ++ VNKMD +
Sbjct: 146 RRHSFIASLLGIRHVVLAVNKMDLVD 171
|
Length = 632 |
| >gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 39/155 (25%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITIT--SASVS 67
NIG++ HVD GKTT T+ + +G TD +E +RGI+I A
Sbjct: 6 NIGMVGHVDHGKTTLTKAL---TG------------VWTDTHSEELKRGISIRLGYADAE 50
Query: 68 IFWEVNKFKYM--------------------INIIDTPGHVDFTIEVERSLRVLDGAVII 107
I+ ++ +D PGH + ++DGA+++
Sbjct: 51 IYKCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLV 110
Query: 108 ICASSGI-QPQTETVWFQSQKYKVPKMIFV-NKMD 140
I A+ QPQT + + ++ V NK+D
Sbjct: 111 IAANEPCPQPQTREHLMALEIIGIKNIVIVQNKID 145
|
This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406 |
| >gnl|CDD|227582 COG5257, GCD11, Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 39/155 (25%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI-------- 61
NIG++ HVD GKTT T+ + SG TD +E +RGITI
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---SGVW------------TDRHSEELKRGITIKLGYADAK 56
Query: 62 --------------TSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVII 107
T + ++ +D PGH + ++DGA+++
Sbjct: 57 IYKCPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLV 116
Query: 108 ICAS-SGIQPQTETVWFQSQKYKVPKMIFV-NKMD 140
I A+ QPQT + + +I V NK+D
Sbjct: 117 IAANEPCPQPQTREHLMALEIIGIKNIIIVQNKID 151
|
Length = 415 |
| >gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 32/146 (21%)
Query: 17 VDAGKTTTTERILFYSGSSHKIGE-----VH-----HGTT--------ITDWMQQEQERG 58
VD GK+T R+L + +I E +H HGT + D +Q E+E+G
Sbjct: 36 VDDGKSTLIGRLLH---DTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQG 92
Query: 59 ITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
ITI A ++ K K++ I DTPGH +T + D A+++I A G+ QT
Sbjct: 93 ITIDVAYR--YFSTEKRKFI--IADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT 148
Query: 119 ETVWFQSQ----KYKVPKMIFVNKMD 140
F + K+ V + VNKMD
Sbjct: 149 RRHSFIATLLGIKHLV---VAVNKMD 171
|
Length = 474 |
| >gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 649 LRSNTKGTIGHVDHGKTTLTAAL--TKVSSEIYGG---EVRA----FDTIDNAPEEKERG 699
LRS +GHVDHGKTTL + + V+ GG + A D I+ + +
Sbjct: 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKK 61
Query: 700 ITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHI 759
I + +D PGH + G A D AIL+ +G PQT+E +
Sbjct: 62 FKI-------RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEAL 114
Query: 760 LLARQVGVPNIVVFLNKAD 778
+ R P VV NK D
Sbjct: 115 NILRMYKTP-FVVAANKID 132
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. Length = 590 |
| >gnl|CDD|206728 cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP1)-like family includes GTPBP2 | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 28/142 (19%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSH--VEYESE-- 712
+G+VD GK+TL LT+ E+ G +A + E E G T S S+ + ++S+
Sbjct: 5 VGNVDAGKSTLLGVLTQ--GELDNGRGKARLNLFRHKHEVESGRTSSVSNDILGFDSDGE 62
Query: 713 --NKHYAH------------------VDCPGHADYIKNMITG--AAQMDGAILVCSAVDG 750
N H +D GH Y+K + G D A+LV A G
Sbjct: 63 VVNYPDNHLGELDVEICEKSSKVVTFIDLAGHERYLKTTVFGMTGYAPDYAMLVVGANAG 122
Query: 751 PMPQTREHILLARQVGVPNIVV 772
+ T+EH+ LA + VP VV
Sbjct: 123 IIGMTKEHLGLALALKVPVFVV 144
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and survival. This fusion product may contribute to the onset of GBM. Length = 224 |
| >gnl|CDD|239671 cd03700, eEF2_snRNP_like_II, EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 298 FVSLVFKIFHDPFLGSL-SFIRIYSGFIKVGDLVY---------NSTKKVKEKIFRILRM 347
V V K+ P G +F R++SG I+ G V + K+ I R+ M
Sbjct: 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLM 60
Query: 348 FANSKKDINDAHFGDIVVIVGLKESSTGDTLCS 380
++ +++ G+IV+IVGL + +G T
Sbjct: 61 MGRYREPVDEVPAGNIVLIVGLDQLKSGTTATI 93
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. Length = 93 |
| >gnl|CDD|237833 PRK14845, PRK14845, translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMD 140
IDTPGH FT +R + D AV+++ + G +PQT ++YK P ++ NK+D
Sbjct: 530 FIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKID 589
Query: 141 RI 142
I
Sbjct: 590 LI 591
|
Length = 1049 |
| >gnl|CDD|235194 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 8e-04
Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 54/141 (38%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI-------- 61
NIG++ HVD GKTT + + +G TD +E +RGITI
Sbjct: 11 NIGMVGHVDHGKTTLVQAL---TGVW------------TDRHSEELKRGITIRLGYADAT 55
Query: 62 --------------TSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSL--------R 99
T + ++ +D PGH E L
Sbjct: 56 IRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGH-----ET---LMATMLSGAA 107
Query: 100 VLDGAVIIICASSGI-QPQTE 119
++DGA+++I A+ QPQT+
Sbjct: 108 LMDGAILVIAANEPCPQPQTK 128
|
Length = 411 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 592 LEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSY-IPLRELFGYSTDLR 650
LEPI ++ +++P E +G V+ + K++G + + N + + IP R L G+ T+
Sbjct: 393 LEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFL 452
Query: 651 SNTKGT 656
++T+GT
Sbjct: 453 TDTRGT 458
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|239680 cd03709, lepA_C, lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.001
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSY-IPLREL-FGYSTDLR 650
EP +K + PSE+LG ++ ++RG+ + + +++ +Y +PL E+ + + L+
Sbjct: 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLK 60
Query: 651 SNTKG 655
S +KG
Sbjct: 61 SISKG 65
|
LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage. Length = 80 |
| >gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 55 QERGIT-----ITSASVSIFWEVNKFKYMINIIDTPG-----HVDFTIE---VERSLRVL 101
+ER I T S+ + +E + KY +IDT G V IE V R+L+ +
Sbjct: 25 EERVIVSDIAGTTRDSIDVPFEYDGQKYT--LIDTAGIRKKGKVTEGIEKYSVLRTLKAI 82
Query: 102 DGA---VIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGAN---YNNCIIDIKK 155
+ A ++++ AS GI Q + + +I VNK D + + ++++
Sbjct: 83 ERADVVLLVLDASEGITEQDLRIAGLILEEGKALIIVVNKWDLVEKDEKTMKEFEKELRR 142
Query: 156 KFNCI 160
K +
Sbjct: 143 KLPFL 147
|
This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1021 | |||
| KOG0465|consensus | 721 | 100.0 | ||
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 100.0 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 100.0 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 100.0 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 100.0 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 100.0 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 100.0 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 100.0 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 100.0 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 100.0 | |
| KOG0464|consensus | 753 | 100.0 | ||
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 100.0 | |
| KOG0469|consensus | 842 | 100.0 | ||
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 100.0 | |
| KOG0468|consensus | 971 | 100.0 | ||
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 100.0 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 100.0 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 100.0 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 100.0 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 100.0 | |
| KOG0467|consensus | 887 | 100.0 | ||
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 100.0 | |
| KOG0462|consensus | 650 | 100.0 | ||
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 100.0 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 100.0 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 100.0 | |
| KOG0460|consensus | 449 | 100.0 | ||
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 100.0 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 100.0 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 100.0 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 100.0 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 100.0 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 100.0 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 100.0 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 100.0 | |
| CHL00071 | 409 | tufA elongation factor Tu | 100.0 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 100.0 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 100.0 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 100.0 | |
| KOG0458|consensus | 603 | 100.0 | ||
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 100.0 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 100.0 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 100.0 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 100.0 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 100.0 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 100.0 | |
| KOG0459|consensus | 501 | 100.0 | ||
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 100.0 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 100.0 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 100.0 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 100.0 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 100.0 | |
| KOG0463|consensus | 641 | 100.0 | ||
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 100.0 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 100.0 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 100.0 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 100.0 | |
| KOG1143|consensus | 591 | 100.0 | ||
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 100.0 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 100.0 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 100.0 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 100.0 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 100.0 | |
| CHL00071 | 409 | tufA elongation factor Tu | 100.0 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 100.0 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 100.0 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 100.0 | |
| KOG0461|consensus | 522 | 100.0 | ||
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 100.0 | |
| KOG0462|consensus | 650 | 100.0 | ||
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 100.0 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 100.0 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 100.0 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 100.0 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 100.0 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 100.0 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 100.0 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 100.0 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 100.0 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 100.0 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 100.0 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 100.0 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 100.0 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 100.0 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.98 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.97 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.97 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.97 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.97 | |
| KOG0460|consensus | 449 | 99.97 | ||
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.97 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.97 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.97 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.97 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.97 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.96 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.96 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.96 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.96 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.96 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.96 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.96 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.96 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.95 | |
| KOG1145|consensus | 683 | 99.95 | ||
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.95 | |
| KOG0458|consensus | 603 | 99.94 | ||
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.94 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.94 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.94 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.94 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.94 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.94 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.94 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.94 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.94 | |
| KOG0052|consensus | 391 | 99.93 | ||
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.93 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.93 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.93 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.93 | |
| KOG0466|consensus | 466 | 99.93 | ||
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.93 | |
| KOG1145|consensus | 683 | 99.93 | ||
| PRK12740 | 668 | elongation factor G; Reviewed | 99.93 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.92 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.92 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.92 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.92 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.92 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.92 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.92 | |
| KOG0461|consensus | 522 | 99.92 | ||
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.92 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.92 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.91 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.91 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.91 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.91 | |
| PF03764 | 120 | EFG_IV: Elongation factor G, domain IV; InterPro: | 99.91 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.9 | |
| cd01684 | 115 | Tet_like_IV EF-G_domain IV_RPP domain is a part of | 99.9 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.88 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.88 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.88 | |
| cd01434 | 116 | EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to do | 99.88 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.87 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.87 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.87 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.87 | |
| cd01680 | 116 | EFG_like_IV Elongation Factor G-like domain IV. Th | 99.87 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.87 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.86 | |
| KOG0459|consensus | 501 | 99.86 | ||
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.85 | |
| cd01693 | 120 | mtEFG2_like_IV mtEF-G2 domain IV. This subfamily i | 99.85 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.85 | |
| KOG0465|consensus | 721 | 99.85 | ||
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.84 | |
| cd01683 | 178 | EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part | 99.83 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.83 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.83 | |
| PF14492 | 75 | EFG_II: Elongation Factor G, domain II; PDB: 1WDT_ | 99.82 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.82 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.82 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.8 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.8 | |
| KOG1144|consensus | 1064 | 99.8 | ||
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.79 | |
| cd01681 | 177 | aeEF2_snRNP_like_IV This family represents domain | 99.79 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.78 | |
| KOG0463|consensus | 641 | 99.77 | ||
| KOG1144|consensus | 1064 | 99.76 | ||
| KOG1143|consensus | 591 | 99.75 | ||
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.74 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.74 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.74 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.74 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.72 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.72 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.72 | |
| cd03690 | 85 | Tet_II Tet_II: This subfamily represents domain II | 99.72 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.71 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.71 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.71 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.7 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.7 | |
| cd03693 | 91 | EF1_alpha_II EF1_alpha_II: this family represents | 99.7 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.7 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.69 | |
| KOG0469|consensus | 842 | 99.69 | ||
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.69 | |
| cd04092 | 83 | mtEFG2_II_like mtEFG2_C: C-terminus of mitochondri | 99.68 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.67 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.67 | |
| KOG0464|consensus | 753 | 99.67 | ||
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.66 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.66 | |
| cd03694 | 87 | GTPBP_II Domain II of the GP-1 family of GTPase. T | 99.66 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.66 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.65 | |
| cd03689 | 85 | RF3_II RF3_II: this subfamily represents the domai | 99.65 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.65 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.65 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.64 | |
| cd04088 | 83 | EFG_mtEFG_II EFG_mtEFG_II: this subfamily represen | 99.64 | |
| cd03697 | 87 | EFTU_II EFTU_II: Elongation factor Tu domain II. E | 99.64 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.64 | |
| cd03698 | 83 | eRF3_II_like eRF3_II_like: domain similar to domai | 99.64 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.64 | |
| KOG0092|consensus | 200 | 99.64 | ||
| cd04091 | 81 | mtEFG1_II_like mtEFG1_C: C-terminus of mitochondri | 99.63 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.63 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.63 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.63 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.63 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.63 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.63 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.62 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.62 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.62 | |
| KOG0466|consensus | 466 | 99.62 | ||
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.62 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.62 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.61 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.61 | |
| KOG0094|consensus | 221 | 99.61 | ||
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.61 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.6 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.6 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.6 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.6 | |
| cd04089 | 82 | eRF3_II eRF3_II: domain II of the eukaryotic class | 99.6 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.6 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.59 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.59 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.59 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.59 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.59 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.59 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.59 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.59 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.59 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.59 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.58 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.58 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.58 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.58 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.58 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.58 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.58 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.58 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.58 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.58 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.58 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.57 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.57 | |
| cd03696 | 83 | selB_II selB_II: this subfamily represents the dom | 99.57 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.57 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.57 | |
| cd03691 | 86 | BipA_TypA_II BipA_TypA_II: domain II of BipA (also | 99.57 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.57 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.57 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.57 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.57 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.57 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.57 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.57 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.57 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.56 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.56 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.56 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.56 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.56 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.56 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.56 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.56 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.56 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.56 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.56 | |
| KOG0467|consensus | 887 | 99.55 | ||
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.55 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.55 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.55 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.55 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.55 | |
| cd03699 | 86 | lepA_II lepA_II: This subfamily represents the dom | 99.55 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.55 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.55 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.55 | |
| KOG1423|consensus | 379 | 99.55 | ||
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.55 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.54 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.54 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.54 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.54 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.54 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.54 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.54 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.54 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.54 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.54 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.54 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.54 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.54 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.54 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.54 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.53 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.53 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.53 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.53 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.53 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.53 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.53 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.53 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.53 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.53 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.53 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.53 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.53 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.53 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.53 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.52 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.52 | |
| cd03695 | 81 | CysN_NodQ_II CysN_NodQ_II: This subfamily represen | 99.52 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.52 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.52 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.52 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.52 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.52 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.52 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.52 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.52 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.51 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.51 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.51 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.51 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.51 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.51 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.51 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.51 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.51 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.51 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.51 | |
| KOG0084|consensus | 205 | 99.51 | ||
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.51 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.5 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.5 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.5 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.5 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.5 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.5 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.5 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.5 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.5 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.5 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.5 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.5 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.5 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.5 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.5 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.5 | |
| KOG0092|consensus | 200 | 99.5 | ||
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.5 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.5 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.5 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.5 | |
| KOG0084|consensus | 205 | 99.5 | ||
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.5 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.5 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.49 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.49 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.49 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.49 | |
| cd03700 | 93 | eEF2_snRNP_like_II EF2_snRNP_like_II: this subfami | 99.49 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.49 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.49 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.49 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.49 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.49 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.49 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.49 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.49 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.49 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.49 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.49 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.48 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.48 | |
| cd04098 | 80 | eEF2_C_snRNP eEF2_C_snRNP: This family includes a | 99.48 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.48 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.48 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.48 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.48 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.48 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.48 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.48 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.47 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.47 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.47 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.47 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.47 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.47 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.47 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.47 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.47 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.47 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.47 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.47 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.47 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.47 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.47 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.47 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.47 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.47 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.47 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.47 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.46 | |
| cd04090 | 94 | eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C termina | 99.46 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.46 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.46 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.46 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.46 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.46 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.46 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.46 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.46 | |
| KOG0468|consensus | 971 | 99.46 | ||
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.45 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.45 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.45 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.45 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.45 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.45 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.45 | |
| KOG0094|consensus | 221 | 99.45 | ||
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.45 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.45 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.45 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.44 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.44 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.44 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.44 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.44 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.44 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.43 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.43 | |
| KOG0078|consensus | 207 | 99.43 | ||
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.43 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.43 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.43 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.43 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.43 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.42 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.42 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.42 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.42 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.42 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.42 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.42 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.42 | |
| smart00838 | 85 | EFG_C Elongation factor G C-terminus. This domain | 99.41 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.41 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.41 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.41 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.41 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.41 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.41 | |
| KOG0394|consensus | 210 | 99.4 | ||
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.4 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.4 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.4 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.39 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.39 | |
| PF00679 | 89 | EFG_C: Elongation factor G C-terminus; InterPro: I | 99.39 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.39 | |
| KOG0073|consensus | 185 | 99.39 | ||
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.39 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.39 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.38 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.38 | |
| KOG0394|consensus | 210 | 99.38 | ||
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.38 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.38 | |
| cd03710 | 79 | BipA_TypA_C BipA_TypA_C: a C-terminal portion of B | 99.38 | |
| KOG0078|consensus | 207 | 99.38 | ||
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.38 | |
| KOG0080|consensus | 209 | 99.37 | ||
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.37 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.37 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.37 | |
| cd03711 | 78 | Tet_C Tet_C: C-terminus of ribosomal protection pr | 99.37 | |
| cd04097 | 78 | mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elo | 99.37 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.37 | |
| KOG0098|consensus | 216 | 99.37 | ||
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.36 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.36 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.36 | |
| KOG0098|consensus | 216 | 99.36 | ||
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.36 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.35 |
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-137 Score=1128.72 Aligned_cols=653 Identities=43% Similarity=0.753 Sum_probs=628.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+++|||+|++|.|+|||||+++++|++|.+.+.|+++.+.+.+||++.|++|||||++++.++.|. ++.||+||
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~----~~~iNiID 110 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR----DYRINIID 110 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec----cceeEEec
Confidence 56789999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.||.-++++|+++.|+|++|+|++.|+++||..+|+|++++++|.|.|+||||+.++++.+++++++.+|..+++.
T Consensus 111 TPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~ 190 (721)
T KOG0465|consen 111 TPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAV 190 (721)
T ss_pred CCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCceeeEEecccceeeeecCCC---eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENS---IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIK 239 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~ 239 (1021)
+|+|++.++.|.|++|++.+++++|+++. ....++|++..+.+.+.|++|+|.+++.||+|.|.||++ .++.+++.
T Consensus 191 vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~ 270 (721)
T KOG0465|consen 191 VQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLK 270 (721)
T ss_pred eEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999999999766 556899999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC-----Cc-ccccc----CCCceEEEEEEEeecC
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN-----ND-YNINL----NSNKFVSLVFKIFHDP 309 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~-----~~-~~~~~----~~~p~~~~V~k~~~~~ 309 (1021)
.++++++..+.++|||||||++|.||++|||++++|||+|.+.+... ++ +++.+ .+.||++++||+..++
T Consensus 271 ~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~ 350 (721)
T KOG0465|consen 271 AAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGR 350 (721)
T ss_pred HHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecC
Confidence 99999999999999999999999999999999999999999876543 11 12222 3349999999999999
Q ss_pred CCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccC-Ccccccc
Q psy5021 310 FLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSL-SENIQLE 388 (1021)
Q Consensus 310 ~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~-~~~~~~~ 388 (1021)
+ |.+.|+|||+|+|++||.+||.++++++|+.+|++||++..++|+++.|||||++.|+ ++.+|||+.+. .....+.
T Consensus 351 f-GqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTftd~~~~~~~m~ 428 (721)
T KOG0465|consen 351 F-GQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTFTDKQNLALSME 428 (721)
T ss_pred c-cceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecc-ccccCceeccCccccceee
Confidence 9 9999999999999999999999999999999999999999999999999999999999 89999999997 5567789
Q ss_pred CCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCe
Q psy5021 389 NIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQ 468 (1021)
Q Consensus 389 ~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~ 468 (1021)
.+.+|+||+++||+|.+.+|.++|.+||.++.+|||++++..|.|+||++|+|||||||||..+||++|||+++.+++|+
T Consensus 429 si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp~ 508 (721)
T KOG0465|consen 429 SIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKPQ 508 (721)
T ss_pred eeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCccccc
Q psy5021 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGY 548 (1021)
Q Consensus 469 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~ 548 (1021)
|+|||||+++++.++.|+||+||.+|||++.-.++|++...+..++|.+++.|+++|++|++|+++||.+++++|||.|+
T Consensus 509 VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~gh 588 (721)
T KOG0465|consen 509 VAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGH 588 (721)
T ss_pred eeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCC
Confidence 99999999999999999999999999999999999998544456789999999999999999999999999999999999
Q ss_pred ceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC
Q psy5021 549 PVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE 628 (1021)
Q Consensus 549 pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~ 628 (1021)
|+.|+++.|.||.+|.+||++.+|+.|++-|+++|+.+|+|+||||||.|||++|+|++|.|+++|++|+|.|.+.+..+
T Consensus 589 pl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~ 668 (721)
T KOG0465|consen 589 PLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSE 668 (721)
T ss_pred cccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 629 NFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 629 ~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+.++|+|.+|+.+||+|.++||++|.|.+-|++.
T Consensus 669 ~~~ti~A~VPL~~mfgYss~LRslTqGkgeftME 702 (721)
T KOG0465|consen 669 DYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTME 702 (721)
T ss_pred ceEEEEecccHHHHhhhhhhhhhhhcCcceEEEe
Confidence 9999999999999999999999999999988874
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-133 Score=1179.32 Aligned_cols=653 Identities=49% Similarity=0.848 Sum_probs=628.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCc-eeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFK-YMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~-~~i~li 82 (1021)
..+++|||+|+||+|||||||+++|++++|.+++.|+++.|++++||+++|++|||||+++++++.|+ + ++||||
T Consensus 6 ~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~----~~~~iNlI 81 (697)
T COG0480 6 PLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWK----GDYRINLI 81 (697)
T ss_pred ccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc----CceEEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999 6 999999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCcee
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 162 (1021)
|||||+||..++.++++++|+||+|+||.+|+++||+.+|+++.++++|+++|+||||+.++++..++++++++|+.++.
T Consensus 82 DTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~ 161 (697)
T COG0480 82 DTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPV 161 (697)
T ss_pred CCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecccCCceeeEEecccceeeeecC-CCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKE-NSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKN 240 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~ 240 (1021)
++|+|++..+.|.|++|++.++++.|+. ..+...++|.+..+...++|..++|.+++.|++++|+||++ +++.+++.+
T Consensus 162 ~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~ 241 (697)
T COG0480 162 PVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKK 241 (697)
T ss_pred eeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHH
Confidence 9999999999999999999999999994 33555888988888889999999999999999999999999 999999999
Q ss_pred HHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC---Cc---ccc--cc-CCCceEEEEEEEeecCCC
Q psy5021 241 SIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN---ND---YNI--NL-NSNKFVSLVFKIFHDPFL 311 (1021)
Q Consensus 241 ~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~---~~---~~~--~~-~~~p~~~~V~k~~~~~~~ 311 (1021)
.+++.+..+.++|++|+||.+|.|++.|||++++++|+|.+.+... .+ +.. .. +++|++++|||+..||+.
T Consensus 242 ~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~ 321 (697)
T COG0480 242 ALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFV 321 (697)
T ss_pred HHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCC
Confidence 9999999999999999999999999999999999999999876433 11 111 11 579999999999999999
Q ss_pred ceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCc
Q psy5021 312 GSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIE 391 (1021)
Q Consensus 312 g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~ 391 (1021)
|+++|+|||||+|++||.++|.+.++++++.+|+.++|+++.++++++||||+++.||+++.+|||||+...+..++++.
T Consensus 322 g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~~v~~~~~~ 401 (697)
T COG0480 322 GKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESME 401 (697)
T ss_pred CeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887667889999
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
+|+||++++|+|++++|++||.++|++|++|||+++++.|+||||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 402 ~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~Y 481 (697)
T COG0480 402 FPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAY 481 (697)
T ss_pred CCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceE
Q psy5021 472 KESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551 (1021)
Q Consensus 472 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~ 551 (1021)
|||+.+.+...++|+||+||++||+++.+++||++ +|.++.|.+++.+|.+|++|++++++||++++++|||+||||+
T Consensus 482 rETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~--~~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~ 559 (697)
T COG0480 482 RETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLE--DGSGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVV 559 (697)
T ss_pred EEeecccccceeeeeeccCCCCcccEEEEEEEeCC--CCcceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceE
Confidence 99999998899999999999999999999999998 7889999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC--C
Q psy5021 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE--N 629 (1021)
Q Consensus 552 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~ 629 (1021)
||+|+|.|+++|++||++++|+.|+++||++|+.+|+|+||||||+|||++|++|+|+|+++|++|||+|++++..+ +
T Consensus 560 dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~ 639 (697)
T COG0480 560 DVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGG 639 (697)
T ss_pred eeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred eEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 630 FKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 630 ~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+..|+|++|++|||||+++||+.|+|.+.+++.
T Consensus 640 ~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~ 672 (697)
T COG0480 640 LDVIKAEVPLAEMFGYATDLRSATQGRASFSME 672 (697)
T ss_pred eEEEEEEechHHhccchhhhHhhcCCceeEEEE
Confidence 589999999999999999999999999998875
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-122 Score=1116.18 Aligned_cols=656 Identities=51% Similarity=0.872 Sum_probs=624.0
Q ss_pred CCC-CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 1 MKN-KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 1 m~~-~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
|.+ +.++||||+|+||+|||||||+++|++.+|.+...|.++++++++|+.++|++||+|++++..++.|+ ++++
T Consensus 2 ~~~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~----~~~~ 77 (693)
T PRK00007 2 ARETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----DHRI 77 (693)
T ss_pred CCcCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC----CeEE
Confidence 445 68899999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
+|||||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+++|+||||+.++++.+.++++++.++.
T Consensus 78 ~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 78 NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred EEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCC----CeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCC
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYS 234 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~ 234 (1021)
.+.+.++|+.....|.|++|++.+..+.|... .+...++|....+.+.+++++|+|.+++.||++||+||++ +++
T Consensus 158 ~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~ 237 (693)
T PRK00007 158 NPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELT 237 (693)
T ss_pred CeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCC
Confidence 99999999999999999999999999999531 2566778888888899999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC----Cc----ccccc-CCCceEEEEEEE
Q psy5021 235 INDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN----ND----YNINL-NSNKFVSLVFKI 305 (1021)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~----~~----~~~~~-~~~p~~~~V~k~ 305 (1021)
.+++.+.+++++..+.++||||+||+++.|+++|||+|++++|+|.+++... +. ....| +++|++++|||+
T Consensus 238 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~ 317 (693)
T PRK00007 238 EEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKI 317 (693)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEe
Confidence 9999999999999999999999999999999999999999999998765321 01 11234 789999999999
Q ss_pred eecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccc
Q psy5021 306 FHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENI 385 (1021)
Q Consensus 306 ~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~ 385 (1021)
.+|++.|+++|+|||||+|++||.|++.+.++.+++.+|+.++|+++.+++++.|||||++.|++++.+||||++...+.
T Consensus 318 ~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~~~~~ 397 (693)
T PRK00007 318 MTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPI 397 (693)
T ss_pred eecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCCCCcc
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999877777
Q ss_pred cccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEe
Q psy5021 386 QLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKIS 465 (1021)
Q Consensus 386 ~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~ 465 (1021)
.++++.+|+|+++++|+|.++.|.+||.+||++|++|||||+|.++++|||++|+|||||||||+++||+++|+++++++
T Consensus 398 ~l~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s 477 (693)
T PRK00007 398 ILESMEFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVG 477 (693)
T ss_pred ccCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEec
Confidence 78888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcc
Q psy5021 466 KPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVV 545 (1021)
Q Consensus 466 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl 545 (1021)
+|+|+|||||.++++..++|++|+||++||++++++++|++ ++.++.|.+++.++.+|++|++||++||++|+++|||
T Consensus 478 ~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~--~~~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL 555 (693)
T PRK00007 478 KPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNE--PGKGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVL 555 (693)
T ss_pred CCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCC--CCCCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999998888999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred cccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeee
Q psy5021 546 LGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTII 625 (1021)
Q Consensus 546 ~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~ 625 (1021)
|||||+||+|+|+|+.+|++|+++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|+||++|++|||+|.+++
T Consensus 556 ~g~pv~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~ 635 (693)
T PRK00007 556 AGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGME 635 (693)
T ss_pred CCCceeeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 626 DHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 626 ~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+.++++.|+|.+|++|+++|.++||++|.|.+.+...
T Consensus 636 ~~~~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~ 672 (693)
T PRK00007 636 DRGGAKVIRAEVPLSEMFGYATDLRSMTQGRATYSME 672 (693)
T ss_pred ccCCcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEE
Confidence 8778899999999999999999999999999877654
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-121 Score=1108.72 Aligned_cols=653 Identities=50% Similarity=0.857 Sum_probs=623.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.++||||+|+||+|||||||+++|++.+|.+.+.|.++++++++|+.++|++||+|++++..++.|+ +++++|||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----~~~i~liD 79 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----GHRINIID 79 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC----CEEEEEEc
Confidence 56889999999999999999999999999999888999999999999999999999999999999998 99999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++.++++.+|++|+|||+.+|++.|++.+|+++...++|+|+|+||||+.++++.+.++++++.++..+.+
T Consensus 80 TPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~ 159 (691)
T PRK12739 80 TPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVP 159 (691)
T ss_pred CCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCceeeEEecccceeeeecCC----CeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDI 238 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~ 238 (1021)
.++|+.....|.|++|+++++.+.|... .+...++|.+..+++.+++++|+|.+++.||+++|+||++ +++.+++
T Consensus 160 ~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l 239 (691)
T PRK12739 160 IQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEI 239 (691)
T ss_pred EEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHH
Confidence 9999999999999999999999999653 2566788888899999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCC-----c--ccccc-CCCceEEEEEEEeecCC
Q psy5021 239 KNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNN-----D--YNINL-NSNKFVSLVFKIFHDPF 310 (1021)
Q Consensus 239 ~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~-----~--~~~~~-~~~p~~~~V~k~~~~~~ 310 (1021)
.+.+++++..+.++|||++||.++.|++.|||+|++++|+|.+++.... . ....| +++|++++|||+.+|++
T Consensus 240 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~ 319 (691)
T PRK12739 240 KAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPF 319 (691)
T ss_pred HHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCC
Confidence 9999999999999999999999999999999999999999987654321 1 12344 78899999999999999
Q ss_pred CceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCC
Q psy5021 311 LGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENI 390 (1021)
Q Consensus 311 ~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~ 390 (1021)
+|+++|+|||||+|++||.|++.+.++++++.+||.++|+++.++++++||||++|.|++++.+||||++......++++
T Consensus 320 ~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~l~~~ 399 (691)
T PRK12739 320 VGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESM 399 (691)
T ss_pred CCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCCCccccCCC
Confidence 99999999999999999999999988899999999999999999999999999999999999999999988777778888
Q ss_pred cCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEE
Q psy5021 391 ETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVS 470 (1021)
Q Consensus 391 ~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~ 470 (1021)
.+|+|+++++|+|.+++|+++|.+||++|+++||+|++.++++|||++|+||||||||+|++||+++|++++++|+|+|+
T Consensus 400 ~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~V~ 479 (691)
T PRK12739 400 EFPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVA 479 (691)
T ss_pred CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccce
Q psy5021 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPV 550 (1021)
Q Consensus 471 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv 550 (1021)
|||||.+.++..++|++|+||++||++++++++|++ +|+++.|.+++.++.+|++|++||++||+||+++||||||||
T Consensus 480 yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~--~~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv 557 (691)
T PRK12739 480 YRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNE--EGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPM 557 (691)
T ss_pred EeeccCCcccccceeccccCCCCceeEEEEEEEECC--CCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCce
Confidence 999999998888999999999999999999999998 789999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCe
Q psy5021 551 IKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENF 630 (1021)
Q Consensus 551 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~ 630 (1021)
+||+|+|+|+.+|++++++++|+.|+++||++|+++|+|+||||||+|||+||++++|+||++|++|||+|.+++..+++
T Consensus 558 ~~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~ 637 (691)
T PRK12739 558 VDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGA 637 (691)
T ss_pred eeEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred EEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 631 KIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 631 ~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
..|+|.+|++|+++|.++||++|+|.+.+...
T Consensus 638 ~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~ 669 (691)
T PRK12739 638 QIVKAFVPLSEMFGYATDLRSATQGRATFSME 669 (691)
T ss_pred EEEEEEeCHHHhhccHHHHHhhccCceEEEEE
Confidence 99999999999999999999999999877653
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-119 Score=1099.24 Aligned_cols=655 Identities=49% Similarity=0.847 Sum_probs=622.9
Q ss_pred CCC-CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 1 MKN-KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 1 m~~-~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
|.+ ++++||||+|+||+|||||||+++|++.++.+.+.|++++|++++|+.+.|++||+|+++...++.|+ ++++
T Consensus 2 ~~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~----~~~i 77 (689)
T TIGR00484 2 ARTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK----GHRI 77 (689)
T ss_pred CCcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC----CeEE
Confidence 455 88999999999999999999999999999999889999999999999999999999999999999999 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
+|||||||.+|..++.++++.+|++|+|+|+.+|++.+++.+|+++...++|+++|+||+|+.++++.+.++++++.++.
T Consensus 78 ~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~ 157 (689)
T TIGR00484 78 NIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGA 157 (689)
T ss_pred EEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCC---eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENS---IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSI 235 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~ 235 (1021)
.+.+.++|+....+|.|++|++.++.++|+++. +...++|++..+.+.++|++|+|++++.||++||+||++ +++.
T Consensus 158 ~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~ 237 (689)
T TIGR00484 158 NAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTI 237 (689)
T ss_pred CceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCH
Confidence 999999999999999999999999999997643 567788999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC----Cc---ccccc-CCCceEEEEEEEee
Q psy5021 236 NDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN----ND---YNINL-NSNKFVSLVFKIFH 307 (1021)
Q Consensus 236 ~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~----~~---~~~~~-~~~p~~~~V~k~~~ 307 (1021)
+++.++++++++.+.++|||++||.+|.|+++|||+|+.++|+|.+++... .. ....| +++|++++|||+.+
T Consensus 238 ~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~ 317 (689)
T TIGR00484 238 EEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVAT 317 (689)
T ss_pred HHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeee
Confidence 999999999999999999999999999999999999999999998754321 00 11233 68999999999999
Q ss_pred cCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccc
Q psy5021 308 DPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQL 387 (1021)
Q Consensus 308 ~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~ 387 (1021)
|++.|+++|+|||||+|+.||.|++...++.+++.+++.++|+++.++++++|||||++.|++++.+||||++......+
T Consensus 318 d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~ 397 (689)
T TIGR00484 318 DPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVIL 397 (689)
T ss_pred cCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCCCcccc
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999987777778
Q ss_pred cCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCC
Q psy5021 388 ENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKP 467 (1021)
Q Consensus 388 ~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p 467 (1021)
+++.+|+|+++++|+|.++.|.+||.+||++|+++||+|++.++++|||++|+|||||||||+++||+++|++++++++|
T Consensus 398 ~~~~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p 477 (689)
T TIGR00484 398 ERMEFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAP 477 (689)
T ss_pred CCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccc
Q psy5021 468 QVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLG 547 (1021)
Q Consensus 468 ~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g 547 (1021)
+|+|||||.+.++..++|++|++|++|||+|+++++|++ + .|+.|.+++.+|.+|++|++||++||+||+++|||||
T Consensus 478 ~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~--~-~g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g 554 (689)
T TIGR00484 478 QVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLE--P-KGYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAG 554 (689)
T ss_pred EEEEeecccCccccccccccccCCCCceEEEEEEEEECC--C-CCcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCC
Confidence 999999999998888999999999999999999999997 4 4899999999999999999999999999999999999
Q ss_pred cceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeec
Q psy5021 548 YPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDH 627 (1021)
Q Consensus 548 ~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~ 627 (1021)
|||+||+|+|+++.+|+++|++++|+.|+++||++|+++|+|+||||||+|||+||++++|+|+++|++|||+|.+++..
T Consensus 555 ~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~ 634 (689)
T TIGR00484 555 YPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEAR 634 (689)
T ss_pred CceeeEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 628 ENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 628 ~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
++++.|+|++|++|+++|.++||++|+|.+.+...
T Consensus 635 ~~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~ 669 (689)
T TIGR00484 635 GNVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSME 669 (689)
T ss_pred CCcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEE
Confidence 78899999999999999999999999999877653
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-117 Score=1080.11 Aligned_cols=653 Identities=45% Similarity=0.777 Sum_probs=620.8
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+++|||+|+||+|||||||+++|++.+|.+.+.|.++.|++.+|+.+.|++||+|+.++..++.|. ++.++|||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~----~~~i~liD 79 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD----NHRINLID 79 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC----CEEEEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++..+++.+|++++|+|++++++.+++.+|+++...++|+++|+||+|+.++++.++++++++.|+..+.+
T Consensus 80 tPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 159 (687)
T PRK13351 80 TPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLP 159 (687)
T ss_pred CCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCceeeEEecccceeeeecCC----CeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDI 238 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~ 238 (1021)
+|+|++.+..|.|++|++.++.+.|... .+...++|+.+.+.+.+++++++|.+++.||+++|+||++ .++.+++
T Consensus 160 ~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l 239 (687)
T PRK13351 160 LQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQL 239 (687)
T ss_pred EEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHH
Confidence 9999999999999999999999999652 2566788989999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCC------cccccc-CCCceEEEEEEEeecCCC
Q psy5021 239 KNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNN------DYNINL-NSNKFVSLVFKIFHDPFL 311 (1021)
Q Consensus 239 ~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~------~~~~~~-~~~p~~~~V~k~~~~~~~ 311 (1021)
...+++++..+.++|+|||||++|.|++.|||+|++++|+|.+.+.... .....| +++|++++|||+.++++.
T Consensus 240 ~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~ 319 (687)
T PRK13351 240 RAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYA 319 (687)
T ss_pred HHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCC
Confidence 9999999999999999999999999999999999999999986543221 012234 678999999999999999
Q ss_pred ceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCc
Q psy5021 312 GSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIE 391 (1021)
Q Consensus 312 g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~ 391 (1021)
|+++|+|||||+|++||.|++.+.++.+++.+|+.++|.++.++++|.||||+++.|++++.+||||++......++++.
T Consensus 320 G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~ 399 (687)
T PRK13351 320 GKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLT 399 (687)
T ss_pred ceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCCccccCCCC
Confidence 99999999999999999999999888999999999999999999999999999999999999999999877666777888
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
+|+|+++++|+|.+++|.++|.+||++|++|||+|++++++||||++|+||||||||++++||+++|++++++++|+|+|
T Consensus 400 ~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y 479 (687)
T PRK13351 400 FPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAY 479 (687)
T ss_pred CCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceE
Q psy5021 472 KESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551 (1021)
Q Consensus 472 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~ 551 (1021)
||||++.++..++|+++++|++||++++++++|++ +++|+.|.+.+.++.+|++|++||++||++|+++||||||||+
T Consensus 480 ~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~--~~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~ 557 (687)
T PRK13351 480 RETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLE--RGAGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVT 557 (687)
T ss_pred EeeccccccccceeeeccCCCceEEEEEEEEEECC--CCCCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCcee
Confidence 99999998888899999999999999999999998 7889999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeE
Q psy5021 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFK 631 (1021)
Q Consensus 552 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 631 (1021)
||+|+|+|+.+|+++|++++|+.|+++||++|+++|+|+||||||+|||+||++++|+||++|++|||+|.+++..+++.
T Consensus 558 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 637 (687)
T PRK13351 558 DLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGE 637 (687)
T ss_pred eEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred E-EEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 632 I-INSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 632 ~-i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
. |+|.+|++|+++|.++||++|+|.+.+...
T Consensus 638 ~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~ 669 (687)
T PRK13351 638 VLVKAEAPLAELFGYATRLRSMTKGRGSFTME 669 (687)
T ss_pred EEEEEEECHHHhhChHHHHHhhcCCceEEEEE
Confidence 5 999999999999999999999999877653
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-110 Score=1024.50 Aligned_cols=643 Identities=46% Similarity=0.804 Sum_probs=610.4
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHH
Q psy5021 14 IAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIE 93 (1021)
Q Consensus 14 iG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~ 93 (1021)
+||+|||||||+++|++.+|.+.+.|+++++.+++|+.+.|++||+|+..+..++.|+ ++.+++||||||.+|..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~----~~~i~liDtPG~~~~~~~ 76 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK----GHKINLIDTPGHVDFTGE 76 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC----CEEEEEEECCCcHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeeecccCCc
Q psy5021 94 VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEEN 173 (1021)
Q Consensus 94 ~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~ 173 (1021)
+.++++.+|++|+|+|++.++..++..+|+.+...++|+++|+||+|+..++..+.++++++.++..+++.++|+..+..
T Consensus 77 ~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~ 156 (668)
T PRK12740 77 VERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDD 156 (668)
T ss_pred HHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEecccceeeeecCCC-eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHHHHHHhcCce
Q psy5021 174 YEGIVDIINKKSFFWKENS-IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKLVLKNKI 251 (1021)
Q Consensus 174 ~~g~id~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~~~~~~~~~~ 251 (1021)
|.|++|++.++.+.|+.+. +...++|+...+++.+++++++|.+++.||+++++||++ .++.++++..++++++.+.+
T Consensus 157 ~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~ 236 (668)
T PRK12740 157 FTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEI 236 (668)
T ss_pred ceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCE
Confidence 9999999999999998433 566778888888899999999999999999999999999 99999999999999999999
Q ss_pred eEEEeccccCcccHHHHHHHHHHhCCCCccccccCC-----cccccc-CCCceEEEEEEEeecCCCceEEEEEEEeeEEe
Q psy5021 252 IPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNN-----DYNINL-NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIK 325 (1021)
Q Consensus 252 ~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~-----~~~~~~-~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~ 325 (1021)
+|+|++||++|.|++.||++|++++|+|.+.+.... .....| +++|++++|||++++++.|+++|+|||||+|+
T Consensus 237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~ 316 (668)
T PRK12740 237 VPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLK 316 (668)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEc
Confidence 999999999999999999999999999976442210 011234 67899999999999999999999999999999
Q ss_pred cCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCcCCCCeEEEEEEeCC
Q psy5021 326 VGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIF 405 (1021)
Q Consensus 326 ~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~~~~Pv~~~~iep~~ 405 (1021)
+||.|++...++.+++.+++.++|++..++++|.||||+++.|++.+.+||||++......++++.+++|+++++|+|.+
T Consensus 317 ~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~~~~~i~p~~ 396 (668)
T PRK12740 317 KGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIEPKD 396 (668)
T ss_pred CCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcceEEEEEECC
Confidence 99999999888889999999999999999999999999999999999999999987767778888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEEEeecccceeeeeEE
Q psy5021 406 KNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQEGKY 485 (1021)
Q Consensus 406 ~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~ 485 (1021)
++|.++|.++|++|+++||+|++..+++|||++|+|+|||||||+++||+++|++++.+++|+|+|||||.++++..++|
T Consensus 397 ~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~~~~~~~ 476 (668)
T PRK12740 397 KGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKAEGHGRH 476 (668)
T ss_pred cchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccC
Q psy5021 486 IKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSV 565 (1021)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~ 565 (1021)
++++||++||++|+++++|++ +++|+.|.+++.++.+|++|++||++||++|+++||||||||+||+|+|+++.+|++
T Consensus 477 ~~~~~~~~~~~~v~l~~ep~~--~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~ 554 (668)
T PRK12740 477 KKQSGGHGQFGDVWLEVEPLP--RGEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSV 554 (668)
T ss_pred ccccCCCCceEEEEEEEEECC--CCCceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccC
Confidence 999999999999999999998 788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccC
Q psy5021 566 DSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGY 645 (1021)
Q Consensus 566 ~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~ 645 (1021)
++++++|+.|+++||++|+++|+|+||||||+|||++|++++|+|+++|++|||+|.+++..++.+.|+|++|++|+++|
T Consensus 555 ~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~ 634 (668)
T PRK12740 555 DSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEVPLAEMFGY 634 (668)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCCEEEEEEcCHHHhhch
Confidence 99999999999999999999999999999999999999999999999999999999999887666999999999999999
Q ss_pred Ccccccceeeeeeeeec
Q psy5021 646 STDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 646 ~~~l~~~t~g~~g~~~~ 662 (1021)
.++||++|.|.+.+...
T Consensus 635 ~~~Lr~~T~G~a~~~~~ 651 (668)
T PRK12740 635 ATDLRSLTQGRGSFSME 651 (668)
T ss_pred HHHHHHhcCCeEEEEEE
Confidence 99999999999877653
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-108 Score=1011.32 Aligned_cols=644 Identities=24% Similarity=0.342 Sum_probs=552.1
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----------
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------- 72 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------- 72 (1021)
+.++||||||+||+|||||||+++|++.+|.+... ...+++++|++++|++||+|++++.+++.|..
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 67899999999999999999999999999988763 44557779999999999999999999999962
Q ss_pred -ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC-------C-
Q psy5021 73 -NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI-------G- 143 (1021)
Q Consensus 73 -~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~-------~- 143 (1021)
++.++.+||||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++...++|+++|+||||++ .
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~ 172 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHH
Confidence 2347899999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred ---CCHHHHHHHHHHH---hCCcee-eeee-ecccC----------------------CceeeEEecccceee---eecC
Q psy5021 144 ---ANYNNCIIDIKKK---FNCIVL-PINF-NIGIE----------------------ENYEGIVDIINKKSF---FWKE 190 (1021)
Q Consensus 144 ---~~~~~~~~~i~~~---l~~~~~-~~~~-p~~~~----------------------~~~~g~id~~~~~~~---~~~~ 190 (1021)
+++.+++++++.. ++.... ++++ |.+.+ ++|.+.+|++..+.| +|++
T Consensus 173 ~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~ 252 (843)
T PLN00116 173 EAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (843)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcC
Confidence 5788899999832 221111 2333 55442 223333444433333 5543
Q ss_pred CC--eeecc--CCh---hhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC---CCCHHHHHHHHHHHHhcCceeEEEecccc
Q psy5021 191 NS--IIIKN--IDK---DQLSAFDYYNELMLETLSNNDEFFLEKYINN---NYSINDIKNSIRKLVLKNKIIPIMCGSSL 260 (1021)
Q Consensus 191 ~~--~~~~~--~~~---~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~---~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~ 260 (1021)
.+ +...+ .+. .+.+++.+++++++|.+++.|++++++|+++ +++.+++.. +++++++..+.|+|++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~~~s-- 329 (843)
T PLN00116 253 ATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWLPAS-- 329 (843)
T ss_pred CCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhcCCh--
Confidence 33 33333 222 2344556799999999999999999999986 699999988 99999999999999976
Q ss_pred CcccHHHHHHHHHHhCCCCccccccC---------C----cccccc-CCCceEEEEEEEeecCCCce-EEEEEEEeeEEe
Q psy5021 261 KNKGIEFLLNSICEYLPSPYDVDFKN---------N----DYNINL-NSNKFVSLVFKIFHDPFLGS-LSFIRIYSGFIK 325 (1021)
Q Consensus 261 ~~~Gi~~Ll~~i~~~lP~p~~~~~~~---------~----~~~~~~-~~~p~~~~V~k~~~~~~~g~-~~~~RV~sG~l~ 325 (1021)
+.|||+|++++|+|.+++..+ + .....| +++|++++|||+.++++.|+ ++|+|||||+|+
T Consensus 330 -----~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~ 404 (843)
T PLN00116 330 -----DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVA 404 (843)
T ss_pred -----HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeec
Confidence 799999999999998643211 0 112344 67899999999999998887 999999999999
Q ss_pred cCCEEE----eCCCcee-----eEeceEEEeecCCeeccccccCCCEEEEecCCcccc-CCeeccCC--ccccccCCcCC
Q psy5021 326 VGDLVY----NSTKKVK-----EKIFRILRMFANSKKDINDAHFGDIVVIVGLKESST-GDTLCSLS--ENIQLENIETP 393 (1021)
Q Consensus 326 ~gd~v~----~~~~~~~-----~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~-gdtl~~~~--~~~~~~~~~~~ 393 (1021)
+||.|+ |...+++ +++.+||.++|+++.++++|+|||||++.|+++..+ ||||++.. .+..++++.+|
T Consensus 405 ~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~ 484 (843)
T PLN00116 405 TGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFS 484 (843)
T ss_pred CCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccC
Confidence 999998 4444433 589999999999999999999999999999998654 99998876 56677888888
Q ss_pred -CCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc--CeeeEEeCCeEE
Q psy5021 394 -IPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN--NIKTKISKPQVS 470 (1021)
Q Consensus 394 -~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~--~v~v~~~~p~V~ 470 (1021)
+|+++++|||.+++|+++|.+||++|++|||+|++. ++||||++|+||||||||||++||+++| ++++++|+|+|+
T Consensus 485 ~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~ 563 (843)
T PLN00116 485 VSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCT-IEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVS 563 (843)
T ss_pred CCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEE-EcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEE
Confidence 999999999999999999999999999999999986 5999999999999999999999999999 999999999999
Q ss_pred EEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCC------------------------------------------
Q psy5021 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLE------------------------------------------ 508 (1021)
Q Consensus 471 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~------------------------------------------ 508 (1021)
|||||.++++..+++ ++ .++|++++++++|++.+
T Consensus 564 yrETI~~~~~~~~~~-~~---~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp 639 (843)
T PLN00116 564 FRETVLEKSCRTVMS-KS---PNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGP 639 (843)
T ss_pred EEecccccccCcEEE-ec---CCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecC
Confidence 999999988766663 44 56789999999999731
Q ss_pred -CCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeecc--CCCCHHHHHHHHHHHHHHHHH
Q psy5021 509 -NKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHS--VDSSEYAFKNAAAIALKDALK 585 (1021)
Q Consensus 509 -~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~~~a~~~a~~ 585 (1021)
...++.|.+++.+..+.+++++||++||++|+++||||||||+||+|+|+|+.+|+ .++.+++|+.|+++||++||+
T Consensus 640 ~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~ 719 (843)
T PLN00116 640 ETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQL 719 (843)
T ss_pred CCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHH
Confidence 01238899988887777888899999999999999999999999999999999998 566788999999999999999
Q ss_pred hcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCe--EEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 586 KANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENF--KIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 586 ~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+|+|+||||||+|||+||++++|+|++||++|||+|.++++.+++ +.|+|++|++|+++|.++||++|+|.+.+...
T Consensus 720 ~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~ 798 (843)
T PLN00116 720 TAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 798 (843)
T ss_pred hCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEE
Confidence 999999999999999999999999999999999999999887654 89999999999999999999999999877653
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-107 Score=1001.27 Aligned_cols=638 Identities=26% Similarity=0.404 Sum_probs=555.0
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec------ccCce
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV------NKFKY 77 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~------~~~~~ 77 (1021)
+.++||||||+||+|||||||+++|++.+|.+.+. ....++++|++++|++||+|++++.+++.|.. ++.++
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK--NAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPF 92 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc--cCCceeecccchhhHhhcceeeccceEEEeecccccccCCCce
Confidence 57899999999999999999999999999987763 22335569999999999999999999999973 23468
Q ss_pred eEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC----C-------CCH
Q psy5021 78 MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI----G-------ANY 146 (1021)
Q Consensus 78 ~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~----~-------~~~ 146 (1021)
.+||+|||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++...++|+++|+||||+. + +++
T Consensus 93 ~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~ 172 (836)
T PTZ00416 93 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNF 172 (836)
T ss_pred EEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998 4 678
Q ss_pred HHHHHHHHHHhC-----------CceeeeeeecccCC--------ceeeE------Eecccceee-----eecCCC--ee
Q psy5021 147 NNCIIDIKKKFN-----------CIVLPINFNIGIEE--------NYEGI------VDIINKKSF-----FWKENS--II 194 (1021)
Q Consensus 147 ~~~~~~i~~~l~-----------~~~~~~~~p~~~~~--------~~~g~------id~~~~~~~-----~~~~~~--~~ 194 (1021)
.+++++++..++ .++.+.|+|++++. .|.++ +++...+.+ +|++.+ +.
T Consensus 173 ~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~ 252 (836)
T PTZ00416 173 VKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWI 252 (836)
T ss_pred HHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEE
Confidence 999999998775 37888999998765 24443 333333333 444332 22
Q ss_pred ecc-------CChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHc--C-CCCHHHH--HH-HHHHHHhcCceeEEEeccccC
Q psy5021 195 IKN-------IDKDQLSAFDYYNELMLETLSNNDEFFLEKYIN--N-NYSINDI--KN-SIRKLVLKNKIIPIMCGSSLK 261 (1021)
Q Consensus 195 ~~~-------~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~--~-~~~~~~~--~~-~~~~~~~~~~~~Pv~~~Sa~~ 261 (1021)
..+ .|..+.+++.+++++|+|.+++.||+++++|++ + +++++++ .. .+.++++ ++|+|+
T Consensus 253 ~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv------- 324 (836)
T PTZ00416 253 KDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA------- 324 (836)
T ss_pred eccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch-------
Confidence 222 355677899999999999999999999999999 5 7888874 33 6777777 799998
Q ss_pred cccHHHHHHHHHHhCCCCccccccC-----C----c----ccccc-CCCceEEEEEEEeecCCCce-EEEEEEEeeEEec
Q psy5021 262 NKGIEFLLNSICEYLPSPYDVDFKN-----N----D----YNINL-NSNKFVSLVFKIFHDPFLGS-LSFIRIYSGFIKV 326 (1021)
Q Consensus 262 ~~Gi~~Ll~~i~~~lP~p~~~~~~~-----~----~----~~~~~-~~~p~~~~V~k~~~~~~~g~-~~~~RV~sG~l~~ 326 (1021)
++.|||+|++++|+|.+++... . . ....| +++|++++|||+.++++.|+ ++|+|||||+|+.
T Consensus 325 ---~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~ 401 (836)
T PTZ00416 325 ---ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVAT 401 (836)
T ss_pred ---HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecC
Confidence 7999999999999998654321 0 1 12344 67899999999999999998 8999999999999
Q ss_pred CCEEE----eCCCceee-----EeceEEEeecCCeeccccccCCCEEEEecCCc--cccCCeeccCCccccccCCcCC-C
Q psy5021 327 GDLVY----NSTKKVKE-----KIFRILRMFANSKKDINDAHFGDIVVIVGLKE--SSTGDTLCSLSENIQLENIETP-I 394 (1021)
Q Consensus 327 gd~v~----~~~~~~~~-----~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~--~~~gdtl~~~~~~~~~~~~~~~-~ 394 (1021)
||.|+ +...+.++ ++.+||.++|++..++++|+|||||+|.|+++ +.+| ||++......++++.++ +
T Consensus 402 g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~~~~ 480 (836)
T PTZ00416 402 GQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVS 480 (836)
T ss_pred CCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccccCCC
Confidence 99998 44444444 59999999999999999999999999999998 7899 99987767777888886 9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc-CeeeEEeCCeEEEEe
Q psy5021 395 PVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQVSYKE 473 (1021)
Q Consensus 395 Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~-~v~v~~~~p~V~yrE 473 (1021)
|+++++|||.+++|++||.++|++|++|||+|.+. +++|||++|+||||+|||+|++||+++| ++++++|+|+|+|||
T Consensus 481 Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~-~~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrE 559 (836)
T PTZ00416 481 PVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCT-TEESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRE 559 (836)
T ss_pred CeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEE-EcCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEE
Confidence 99999999999999999999999999999999996 4899999999999999999999999999 999999999999999
Q ss_pred ecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCC------------------------CCce-----------EEec
Q psy5021 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENK------------------------ENFI-----------FKSE 518 (1021)
Q Consensus 474 ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~------------------------~~~~-----------f~~~ 518 (1021)
||.+.++..++|++++++ ++++++++|+++ + .++. |.++
T Consensus 560 TI~~~s~~~~~~~~~~~~----~~v~~~~ePl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~ 633 (836)
T PTZ00416 560 TVTEESSQTCLSKSPNKH----NRLYMKAEPLTE--ELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPE 633 (836)
T ss_pred EecccccceEEEECCCCC----eeEEEEEEECCH--HHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCC
Confidence 999999989999999765 389999999973 2 1333 6666
Q ss_pred cccCCC------chhhHH----HHHHHHHHHHhcCcccccceEEEEEEEEeeeecc--CCCCHHHHHHHHHHHHHHHHHh
Q psy5021 519 IIGGSI------PKEFIP----AIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHS--VDSSEYAFKNAAAIALKDALKK 586 (1021)
Q Consensus 519 ~~~~~~------~~~~~~----~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~~~a~~~a~~~ 586 (1021)
+.|+++ +.+|++ ||++||+||+++||||||||+||+|+|+|+.+|+ .++++++|+.|+++||++|+++
T Consensus 634 ~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~ 713 (836)
T PTZ00416 634 NKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELT 713 (836)
T ss_pred CCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhh
Confidence 677766 555555 9999999999999999999999999999999998 7888999999999999999999
Q ss_pred cCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCe--EEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 587 ANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENF--KIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 587 a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
|+|+||||||+|||+||++++|+|++||++|||+|+++++.+++ ++|+|++|++|++||.++||++|+|.+.+...
T Consensus 714 a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~ 791 (836)
T PTZ00416 714 ASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCV 791 (836)
T ss_pred CCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEE
Confidence 99999999999999999999999999999999999999887665 89999999999999999999999999887654
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-103 Score=955.51 Aligned_cols=605 Identities=31% Similarity=0.502 Sum_probs=529.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+++|||+|+||+|||||||+++|++.+|.+.+. ...+++++|+.++|++||+|++++.+++.|..++.+++++|||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liD 92 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLID 92 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEe
Confidence 56789999999999999999999999999988762 3445678999999999999999998886655555589999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++.++++.+|++|+|+|+.+|++.+++.+|+.+...++|+++|+||+|+..++++.+++++++.++..+..
T Consensus 93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~ 172 (720)
T TIGR00490 93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITE 172 (720)
T ss_pred CCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765443
Q ss_pred eeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHc---------C-CC
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYIN---------N-NY 233 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~---------~-~~ 233 (1021)
++.++... .+++ ++..+.+..++.++.+++.|++ . .+
T Consensus 173 v~~~~~~~--------------------------~~~~-------~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~ 219 (720)
T TIGR00490 173 VNKLIKAM--------------------------APEE-------FRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGI 219 (720)
T ss_pred HHhhhhcc--------------------------CCHH-------HhhceEechhhCCHHHHhhhhcccccchhHhhcCC
Confidence 33332110 0110 1112334455666777777766 3 45
Q ss_pred CHHHHHHHHHHHHhcC--ceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC---------C----cccccc-CCCc
Q psy5021 234 SINDIKNSIRKLVLKN--KIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN---------N----DYNINL-NSNK 297 (1021)
Q Consensus 234 ~~~~~~~~~~~~~~~~--~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~---------~----~~~~~~-~~~p 297 (1021)
+.+++.+.+.+..... .++|+ ++.|||+|++++|+|.+++... . .....| +++|
T Consensus 220 ~~~~l~~~~~~~~~~~~~~~~Pv----------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p 289 (720)
T TIGR00490 220 GFKDIYKYCKEDKQKELAKKSPL----------HQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGP 289 (720)
T ss_pred CHHHHHHHHHhccHHHHhhhhhH----------HHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCC
Confidence 6666666655444333 58888 5899999999999998643111 0 012334 6789
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCe
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDT 377 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdt 377 (1021)
++++|||+.++++.|+++|+|||||+|++||.|++.+.+..++|.+|+.++|++..++++|.|||||++.|++++.+|||
T Consensus 290 l~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 369 (720)
T TIGR00490 290 LALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGET 369 (720)
T ss_pred eEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECccccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcc-ccccCC-cCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHH
Q psy5021 378 LCSLSEN-IQLENI-ETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRIL 455 (1021)
Q Consensus 378 l~~~~~~-~~~~~~-~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~ 455 (1021)
||+.... ..++++ .+|+|+++++|+|.+++|+++|.++|++|++|||+|+++++++|||++|+||||||||++++||+
T Consensus 370 L~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~ 449 (720)
T TIGR00490 370 ICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIR 449 (720)
T ss_pred eecCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHH
Confidence 9987644 345655 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCeeeEEeCCeEEEEeeccccee-eeeEEEecCCCCceeEEEEEEEeecCCCCC------------------------
Q psy5021 456 KENNIKTKISKPQVSYKESIKKIVT-QEGKYIKQSGGKGQYGHVVIRIEPISLENK------------------------ 510 (1021)
Q Consensus 456 ~~~~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~------------------------ 510 (1021)
++|++++++++|+|+|||||.+.++ .+++| .++|++++++++|++ ++
T Consensus 450 ~~~~vev~~~~P~V~YrETi~~~~~~~~~~~------~~~~~~v~l~iePl~--~~~~~~i~~~~~~~~~~~~~~~~~~~ 521 (720)
T TIGR00490 450 EDYGLDVETSPPIVVYRETVTGTSPVVEGKS------PNKHNRFYIVVEPLE--ESVIQAFKEGKIVDMKMKKKERRRLL 521 (720)
T ss_pred HHhCCceeecCCEEEEEEeccccccceEEEc------CCCcEEEEEEEEECC--cchhhhhhcccccccccchHHHHHHH
Confidence 9999999999999999999999876 55554 237899999999998 44
Q ss_pred -----------------CCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeecc--CCCCHHH
Q psy5021 511 -----------------ENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHS--VDSSEYA 571 (1021)
Q Consensus 511 -----------------~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~ 571 (1021)
.|+.|.+++.++.+|++|++||++||+||+++||||||||+||+|+|+|+.+|+ +||++++
T Consensus 522 ~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~ 601 (720)
T TIGR00490 522 IEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQ 601 (720)
T ss_pred HhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccch
Confidence 789999999999999999999999999999999999999999999999999995 8899999
Q ss_pred HHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCccccc
Q psy5021 572 FKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRS 651 (1021)
Q Consensus 572 ~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~ 651 (1021)
|+.|+++||++|+.+|+|+||||||+|||+||++++|+|+++|++|||+|.+++..++.+.|+|++|++|+|||.++||+
T Consensus 602 f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~I~A~vP~~e~fgy~~~Lrs 681 (720)
T TIGR00490 602 VIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEGDMVTIIAKAPVAEMFGFAGAIRG 681 (720)
T ss_pred HHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCCCcEEEEEEEehHHhcCCcHHHHh
Confidence 99999999999999999999999999999999999999999999999999998876778999999999999999999999
Q ss_pred ceeeeeeeee
Q psy5021 652 NTKGTIGHVD 661 (1021)
Q Consensus 652 ~t~g~~g~~~ 661 (1021)
+|+|.+.+..
T Consensus 682 ~T~G~a~~~~ 691 (720)
T TIGR00490 682 ATSGRCLWST 691 (720)
T ss_pred hCCCCceEEE
Confidence 9999988765
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-106 Score=838.27 Aligned_cols=648 Identities=36% Similarity=0.580 Sum_probs=581.0
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+..++|||+|++|+|+||||.+++++|.+|++...|++++|.+++|++..|++||||+++++++|.|+ +|++|+||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk----g~rinlid 108 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK----GHRINLID 108 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc----cceEeeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||+||.-++++.+++.||++.|+|++.|+++||..+|+++.+.++|.+.|+||||+..++++..+++++++|+..++.
T Consensus 109 tpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~ 188 (753)
T KOG0464|consen 109 TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALK 188 (753)
T ss_pred CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCce-eeEEecccceeeeecCCC-----eeecc----CChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC--
Q psy5021 164 INFNIGIEENY-EGIVDIINKKSFFWKENS-----IIIKN----IDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-- 231 (1021)
Q Consensus 164 ~~~p~~~~~~~-~g~id~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-- 231 (1021)
+|+|+++...| .|++|++..+.+.|+-+. |...+ ..++..+...+++..|++++++.|+++.++||+.
T Consensus 189 l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~ 268 (753)
T KOG0464|consen 189 LQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFD 268 (753)
T ss_pred EEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhh
Confidence 99999999999 899999999999995322 44443 3456777788899999999999999999998875
Q ss_pred ----CCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEee
Q psy5021 232 ----NYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFH 307 (1021)
Q Consensus 232 ----~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 307 (1021)
.++.++++..+++.+...+..|++||||.++.||++|||++.-|+|+|.+++... +.--...++++.||+.+
T Consensus 269 ~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyef----lqwykddlcalafkvlh 344 (753)
T KOG0464|consen 269 ENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEF----LQWYKDDLCALAFKVLH 344 (753)
T ss_pred ccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHH----HhhhhhhHHHHhhhhhc
Confidence 6889999999999999999999999999999999999999999999999874210 01134678999999999
Q ss_pred cCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCC-----
Q psy5021 308 DPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLS----- 382 (1021)
Q Consensus 308 ~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~----- 382 (1021)
|+.+|.++|.|||||+++++-.++|.+.+..+.+.+++.+.+++..++.++.||+|...+||+...+|||+..++
T Consensus 345 dkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivaskasa~a 424 (753)
T KOG0464|consen 345 DKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVASKASAEA 424 (753)
T ss_pred ccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEecchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997642
Q ss_pred -------------------ccccccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecC
Q psy5021 383 -------------------ENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMG 443 (1021)
Q Consensus 383 -------------------~~~~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~G 443 (1021)
....+.++++|.|||++.|||.+-..++.+..+|+.|.+||||+.++.|++|||+++.|||
T Consensus 425 a~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~g 504 (753)
T KOG0464|consen 425 AAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGMG 504 (753)
T ss_pred HHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEeccc
Confidence 1233678899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCeeeEEeCCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCC---CCceEE--ec
Q psy5021 444 ELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENK---ENFIFK--SE 518 (1021)
Q Consensus 444 elhLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~---~~~~f~--~~ 518 (1021)
|||+|++.+|++|+||+++-+++.+|+|||+|.+......+.....|.+.+-..|.+.+.|.+...- +-++|+ ..
T Consensus 505 elhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~kkiefe~~es 584 (753)
T KOG0464|consen 505 ELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPFKKIEFELAES 584 (753)
T ss_pred hhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccccccceeEEeecccc
Confidence 9999999999999999999999999999999999877766777666666665555555555431011 112332 11
Q ss_pred cccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEE
Q psy5021 519 IIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKV 598 (1021)
Q Consensus 519 ~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ 598 (1021)
...+ +-+--+.||+.|+..||.+|||+|+|+.+|+++|.+...|....++.-+..|+.+|+.+||.+|.-+++||+|++
T Consensus 585 ~n~~-~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad~~l~eplm~l 663 (753)
T KOG0464|consen 585 ANEG-LLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKADKQLLEPLMEL 663 (753)
T ss_pred ccch-hhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHHHHhhhhHHHhhhhhhe
Confidence 1111 112238999999999999999999999999999999999998888888889999999999999999999999999
Q ss_pred EEEcCC-ccHhhHHHHHHcCCcEEeeeeecCCe--EEEEEEcchhhhccCCcccccceeeeeeee
Q psy5021 599 EVNLPS-EFLGIVVGDINKKRGIINTIIDHENF--KIINSYIPLRELFGYSTDLRSNTKGTIGHV 660 (1021)
Q Consensus 599 ei~~p~-~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~ 660 (1021)
+|.+.. +++..|+++|.+|||.+.+.+...+. ..|-|.+|++|..+|+..+|.+|+|.+.+.
T Consensus 664 ei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~a 728 (753)
T KOG0464|consen 664 EIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFA 728 (753)
T ss_pred EEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEE
Confidence 998866 99999999999999999988876644 569999999999999999999999987665
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-102 Score=949.68 Aligned_cols=610 Identities=30% Similarity=0.491 Sum_probs=504.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.++||||+|+||+|||||||+++|++.+|.+.+. ..++++++|+.++|++||+|++++.+++.|..++.++++||||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD 93 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID 93 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence 57899999999999999999999999999988763 3445788999999999999999999999996555689999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+|+|+||||+..++++...+++++.++...
T Consensus 94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~-- 171 (731)
T PRK07560 94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKII-- 171 (731)
T ss_pred CCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999989999999999999998887777777666653210
Q ss_pred eeeecccCCceeeEEecccceee----eecCCC--eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSF----FWKENS--IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSIND 237 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~ 237 (1021)
..+.++++.+.++.+ .+++.. .... ..+..+....+.+.+. ....++
T Consensus 172 --------~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~---------------sa~~~~~~~~~~~~~~----~~~~~~ 224 (731)
T PRK07560 172 --------KDVNKLIKGMAPEEFKEKWKVDVEDGTVAFG---------------SALYNWAISVPMMQKT----GIKFKD 224 (731)
T ss_pred --------HHHHHHHHHhhhhhhhcceeecCCCCcEeee---------------ecccccceeHHHHHHh----CCCHHH
Confidence 011111211111111 011100 0000 0000000000111110 011111
Q ss_pred HHHHHH----HHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC---------Cc----ccccc-CCCceE
Q psy5021 238 IKNSIR----KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN---------ND----YNINL-NSNKFV 299 (1021)
Q Consensus 238 ~~~~~~----~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~---------~~----~~~~~-~~~p~~ 299 (1021)
+.+... ..+ ..++|++ +.|||+|++++|+|.++++.. .+ ....| +++|++
T Consensus 225 l~e~~~~~~~~~l--~~~~Pv~----------~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~ 292 (731)
T PRK07560 225 IIDYYEKGKQKEL--AEKAPLH----------EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLV 292 (731)
T ss_pred HHHHHhcCCHHHH--Hhhccch----------hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEE
Confidence 111110 000 0124442 489999999999998654311 00 11234 678999
Q ss_pred EEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeec
Q psy5021 300 SLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLC 379 (1021)
Q Consensus 300 ~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~ 379 (1021)
++|||+.+|++.|+++|+|||||+|++||.|++.+.+.++++.+|+.++|++..++++|.||||+++.|++++.+||||+
T Consensus 293 a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL~ 372 (731)
T PRK07560 293 MMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETVV 372 (731)
T ss_pred EEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEcccccccCCEEe
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred cCCccccccCC-cCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc
Q psy5021 380 SLSENIQLENI-ETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN 458 (1021)
Q Consensus 380 ~~~~~~~~~~~-~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~ 458 (1021)
+......++++ .+|+|+++++|+|.++.|.+||.++|++|++|||+|++.++++|||++|+||||||||++++||+++|
T Consensus 373 ~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~ 452 (731)
T PRK07560 373 SVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDY 452 (731)
T ss_pred CCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHh
Confidence 87766677776 48899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEeCCeEEEEeeccccee-eeeEEEecCCCCceeEEEEEEEeecCCCC----------------------------
Q psy5021 459 NIKTKISKPQVSYKESIKKIVT-QEGKYIKQSGGKGQYGHVVIRIEPISLEN---------------------------- 509 (1021)
Q Consensus 459 ~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~~~---------------------------- 509 (1021)
++++++++|+|+|||||.++++ ..++ ++ ++|++|+++++|++.+.
T Consensus 453 ~vev~~~~p~V~yrETI~~~~~~~~~~----~~--~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 526 (731)
T PRK07560 453 GIEVVTSEPIVVYRETVRGKSQVVEGK----SP--NKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEA 526 (731)
T ss_pred CCceEecCCEEEEEEecccCccceEEE----CC--CCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhc
Confidence 9999999999999999998864 3322 33 33789999999997310
Q ss_pred -------------CCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeec--cCCCCHHHHHH
Q psy5021 510 -------------KENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFH--SVDSSEYAFKN 574 (1021)
Q Consensus 510 -------------~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~--~~~s~~~~~~~ 574 (1021)
+.++.|.+++.++.+|++|++||++||+||+++||||||||+||+|+|+|+++| ..++++++|+.
T Consensus 527 g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~ 606 (731)
T PRK07560 527 GMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIP 606 (731)
T ss_pred CCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHH
Confidence 137999999999999999999999999999999999999999999999999999 45778999999
Q ss_pred HHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCccccccee
Q psy5021 575 AAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTK 654 (1021)
Q Consensus 575 a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~ 654 (1021)
|+++||++|+++|+|+||||||+|||+||++|+|+|+++|++|||+|.+++..++.+.|+|++|++|+++|.++||++|+
T Consensus 607 a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~ 686 (731)
T PRK07560 607 AVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEGDMAIIEAEAPVAEMFGFAGEIRSATE 686 (731)
T ss_pred HHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCCCcEEEEEEEehHHhcCCchHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999887778999999999999999999999999
Q ss_pred eeeeeeec
Q psy5021 655 GTIGHVDH 662 (1021)
Q Consensus 655 g~~g~~~~ 662 (1021)
|.+.+...
T Consensus 687 G~~~~~~~ 694 (731)
T PRK07560 687 GRALWSTE 694 (731)
T ss_pred CCceEEEE
Confidence 99887654
|
|
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-95 Score=771.69 Aligned_cols=641 Identities=26% Similarity=0.361 Sum_probs=516.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----------
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------- 72 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------- 72 (1021)
+..+|||+.+++|+|||||||+++|...+|.++.. -..+++++|++++|++|||||+++++++.++.
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~a--kaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAA--KAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeec--ccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 56789999999999999999999999999988642 13458999999999999999999999998765
Q ss_pred -ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCH----H
Q psy5021 73 -NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANY----N 147 (1021)
Q Consensus 73 -~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~----~ 147 (1021)
++.++.|||||.|||+||++++..|||+.|||++|||+.+|++.||+.+++|+...++..++|+||||+.-.++ +
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHH
Confidence 24678999999999999999999999999999999999999999999999999999999999999999975443 3
Q ss_pred HHHHHHHHHh-CCceeee----------e-eec----ccCCceeeE----------------EecccceeeeecCCCe--
Q psy5021 148 NCIIDIKKKF-NCIVLPI----------N-FNI----GIEENYEGI----------------VDIINKKSFFWKENSI-- 193 (1021)
Q Consensus 148 ~~~~~i~~~l-~~~~~~~----------~-~p~----~~~~~~~g~----------------id~~~~~~~~~~~~~~-- 193 (1021)
+..+.+++.. +.+.... + .|. +.++.+.|+ +|...+-..+|++..+
T Consensus 173 eLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ 252 (842)
T KOG0469|consen 173 ELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNP 252 (842)
T ss_pred HHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCc
Confidence 3333333322 1222211 1 121 112233332 4555555667765432
Q ss_pred -----ee-------ccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC---CCCHHHHH---HHHHHHHhcCceeEEE
Q psy5021 194 -----II-------KNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN---NYSINDIK---NSIRKLVLKNKIIPIM 255 (1021)
Q Consensus 194 -----~~-------~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~---~~~~~~~~---~~~~~~~~~~~~~Pv~ 255 (1021)
.. .+....+..++.....++++++.+...+-...||+. .+..++.. +++-+.+. ++|+|-
T Consensus 253 ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vM-r~wLPA- 330 (842)
T KOG0469|consen 253 KTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVM-RKWLPA- 330 (842)
T ss_pred cCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHH-HHhcch-
Confidence 11 122334555666778899999988877666666654 22222211 22333222 468885
Q ss_pred eccccCcccHHHHHHHHHHhCCCCccccccC---------Ccc----cccc-CCCceEEEEEEEeecCCC-ceEEEEEEE
Q psy5021 256 CGSSLKNKGIEFLLNSICEYLPSPYDVDFKN---------NDY----NINL-NSNKFVSLVFKIFHDPFL-GSLSFIRIY 320 (1021)
Q Consensus 256 ~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~---------~~~----~~~~-~~~p~~~~V~k~~~~~~~-g~~~~~RV~ 320 (1021)
-+.||++|+-+||||..+|..+ +++ -..| +++|+.+||+|+...... .+++|+|||
T Consensus 331 ---------adallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVF 401 (842)
T KOG0469|consen 331 ---------ADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVF 401 (842)
T ss_pred ---------HHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeee
Confidence 5899999999999999888755 111 1245 899999999999977665 469999999
Q ss_pred eeEEecCCEEEe----CCCceee-----EeceEEEeecCCeeccccccCCCEEEEecCCc-cccCCeeccCCccccccCC
Q psy5021 321 SGFIKVGDLVYN----STKKVKE-----KIFRILRMFANSKKDINDAHFGDIVVIVGLKE-SSTGDTLCSLSENIQLENI 390 (1021)
Q Consensus 321 sG~l~~gd~v~~----~~~~~~~-----~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~gdtl~~~~~~~~~~~~ 390 (1021)
||++..|++++. +..++++ .|.+...|+|+..++++.++||+|+++.|+++ +.++.||+.......++.+
T Consensus 402 sG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvM 481 (842)
T KOG0469|consen 402 SGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVM 481 (842)
T ss_pred cceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceEE
Confidence 999999999994 4445543 36667789999999999999999999999998 5677888887777777778
Q ss_pred cCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc-CeeeEEeCCe
Q psy5021 391 ETP-IPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQ 468 (1021)
Q Consensus 391 ~~~-~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~-~v~v~~~~p~ 468 (1021)
+|. .||+++++|++++.|++||.++|++|+++||.+.+.+ +|+||+++.|.||||||||+++|++.| ++.++.|+|.
T Consensus 482 KFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~-~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~sdPv 560 (842)
T KOG0469|consen 482 KFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPV 560 (842)
T ss_pred EeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEe-ccCCceEEeccchhhHHHHHhhHhhcccCCceecCCCe
Confidence 776 8999999999999999999999999999999999986 589999999999999999999999999 9999999999
Q ss_pred EEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCC------CC--------------------------------
Q psy5021 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLE------NK-------------------------------- 510 (1021)
Q Consensus 469 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~------~~-------------------------------- 510 (1021)
|+||||+.+.++.... +.....+.++.+.++|++++ .|
T Consensus 561 VsYrEtvs~~ss~~~l----sKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCf 636 (842)
T KOG0469|consen 561 VSYRETVSEESSQTCL----SKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCF 636 (842)
T ss_pred eeeecccccccchhhh----ccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEe
Confidence 9999999987653221 11222346788999999751 00
Q ss_pred -----CCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCCCHHHH--HHHHHHHHHHH
Q psy5021 511 -----ENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAF--KNAAAIALKDA 583 (1021)
Q Consensus 511 -----~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~--~~a~~~a~~~a 583 (1021)
..|.+.|.+.+-.+-.++++++..||+||.++|||+|+.|++|+|.+.|...|....+.+.. ...+|++|+.+
T Consensus 637 gPd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~ 716 (842)
T KOG0469|consen 637 GPDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYAS 716 (842)
T ss_pred CCCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHH
Confidence 13555666666677789999999999999999999999999999999999999877666544 45999999999
Q ss_pred HHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCC--eEEEEEEcchhhhccCCcccccceeeeeeeee
Q psy5021 584 LKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHEN--FKIINSYIPLRELFGYSTDLRSNTKGTIGHVD 661 (1021)
Q Consensus 584 ~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~ 661 (1021)
++.|+|+|+||+|.|||+||++++|.||+.|++|||++.+++...| ++.|+|++|+.|+|||..+||+.|.|.++..+
T Consensus 717 ~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~ 796 (842)
T KOG0469|consen 717 VLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQM 796 (842)
T ss_pred HHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccce
Confidence 9999999999999999999999999999999999999999988765 59999999999999999999999999987665
Q ss_pred c
Q psy5021 662 H 662 (1021)
Q Consensus 662 ~ 662 (1021)
+
T Consensus 797 v 797 (842)
T KOG0469|consen 797 V 797 (842)
T ss_pred e
Confidence 4
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-78 Score=702.99 Aligned_cols=449 Identities=25% Similarity=0.426 Sum_probs=410.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccC----CcccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHH----GTTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~----~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
..+++|||+|+||+|||||||+++|++.+|.+...|.++. ..+++||++.|++||+|+.++..++.|+ ++.+
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~----~~~i 81 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR----DCLI 81 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC----CEEE
Confidence 4578999999999999999999999999999999998863 2356999999999999999999999999 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
|+||||||.+|..++.++++.+|++|+|+|+++|++.+++.+|+.+...++|+++|+||+|+.++++.++++++++.|+.
T Consensus 82 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 82 NLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred EEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDI 238 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~ 238 (1021)
.++++++|++.++.|.|++|+++++.+.|..+.-. ...+.|.+++.||++|++|+++ .+ +++
T Consensus 162 ~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~---------------~~~~~e~~~~~dd~lle~~l~~~~~--~~l 224 (526)
T PRK00741 162 ACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGH---------------TIQEVEIIKGLDNPELDELLGEDLA--EQL 224 (526)
T ss_pred CCeeEEeccccCCceeEEEEeecceeeecccCCCC---------------cceeeeeccCCCHHHHHHHhcccHH--HHH
Confidence 99999999999999999999999999999532100 0134568899999999999997 44 666
Q ss_pred HHHH-----------HHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEee
Q psy5021 239 KNSI-----------RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFH 307 (1021)
Q Consensus 239 ~~~~-----------~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 307 (1021)
...+ ++++..+.++|||||||++|.||++|||+|++++|+|.+++... ......+.+++++|||+.+
T Consensus 225 ~~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~--~~~~~~~~~~~~~VFK~~~ 302 (526)
T PRK00741 225 REELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDE--REVEPTEEKFSGFVFKIQA 302 (526)
T ss_pred HHHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccc--eeecCCCCceEEEEEEEEe
Confidence 6666 88999999999999999999999999999999999997643210 0111245679999999994
Q ss_pred ---cCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCcc
Q psy5021 308 ---DPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSEN 384 (1021)
Q Consensus 308 ---~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~ 384 (1021)
++++|+++|+|||||+|++||.|+|.++++++++.+++.++|+++.++++|.||||+++.|++++++|||||... +
T Consensus 303 ~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL~~~~-~ 381 (526)
T PRK00741 303 NMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-K 381 (526)
T ss_pred cCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCCccCCC-c
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999865 6
Q ss_pred ccccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEE
Q psy5021 385 IQLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464 (1021)
Q Consensus 385 ~~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~ 464 (1021)
..++++++|+|+++++|+|+++.|.+||.+||++|++||| +++.++++|||++|+|||||||||+++||+++||+++.+
T Consensus 382 ~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ey~v~v~~ 460 (526)
T PRK00741 382 LKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNEYNVEAIY 460 (526)
T ss_pred cccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHHhCCEEEE
Confidence 7788999999999999999999999999999999999995 999999999999999999999999999999999999999
Q ss_pred eCCeEEEEeeccc
Q psy5021 465 SKPQVSYKESIKK 477 (1021)
Q Consensus 465 ~~p~V~yrEti~~ 477 (1021)
++|+|++-.-+..
T Consensus 461 ~~~~v~~~rw~~~ 473 (526)
T PRK00741 461 EPVGVATARWVEC 473 (526)
T ss_pred ecCCccEEEEEeC
Confidence 9999999887753
|
|
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=666.15 Aligned_cols=642 Identities=21% Similarity=0.312 Sum_probs=499.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~li 82 (1021)
...++|||+++||.+||||+|.+.|..+++.--. -..+..-+++|.+..|++||++|++...++...+ +++.|.+|++
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~-~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFS-KNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceecccccc-ccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 5788999999999999999999999877763221 1123346899999999999999999999988876 6788999999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCH-----------HHHHH
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANY-----------NNCII 151 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~-----------~~~~~ 151 (1021)
|||||++|+.++.++++.+|++++|||+.+|+.-+|+.+++++-+.++|+++|+||+||...++ ..+++
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~ 282 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIID 282 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999974432 33445
Q ss_pred HHHHHhC---CceeeeeeecccCCcee---------------------eEEecccceeeeec-----CCC--eeec----
Q psy5021 152 DIKKKFN---CIVLPINFNIGIEENYE---------------------GIVDIINKKSFFWK-----ENS--IIIK---- 196 (1021)
Q Consensus 152 ~i~~~l~---~~~~~~~~p~~~~~~~~---------------------g~id~~~~~~~~~~-----~~~--~~~~---- 196 (1021)
+++..+. ..-.++--|+..+-.|. |-++.......+|+ ..+ |..+
T Consensus 283 ~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~ 362 (971)
T KOG0468|consen 283 EINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDG 362 (971)
T ss_pred HhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCC
Confidence 5554332 22222333433222221 11344344444443 333 2222
Q ss_pred cCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC---CCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHH
Q psy5021 197 NIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN---NYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSIC 273 (1021)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~---~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~ 273 (1021)
..+..+.+++.+..+++++.+...-++-+...+.. .++.++++...+-.++ .++.-|++.. ..+.|+++
T Consensus 363 ~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~--lvc~~ffg~~------sgfvd~~v 434 (971)
T KOG0468|consen 363 SGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLR--LVCKSFFGIE------SGFVDMPV 434 (971)
T ss_pred cccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHH--HHHHHhccch------hhhhHhhH
Confidence 12346888999999999987766555555555544 6777776644332221 0111233332 46899999
Q ss_pred HhCCCCccccccC-----C--------cccccc-CCCceEEEEEEEeec-CCCceEEEEEEEeeEEecCCEEEeCCCc--
Q psy5021 274 EYLPSPYDVDFKN-----N--------DYNINL-NSNKFVSLVFKIFHD-PFLGSLSFIRIYSGFIKVGDLVYNSTKK-- 336 (1021)
Q Consensus 274 ~~lP~p~~~~~~~-----~--------~~~~~~-~~~p~~~~V~k~~~~-~~~g~~~~~RV~sG~l~~gd~v~~~~~~-- 336 (1021)
+++|+|.+..... . ..++.| +++|++..+.|++.. ....+.+|+||+||+++.|+.|.....+
T Consensus 435 ~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~ 514 (971)
T KOG0468|consen 435 EHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYS 514 (971)
T ss_pred hhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeecccc
Confidence 9999998743322 1 124566 889999999999964 4467899999999999999999843221
Q ss_pred -------eeeEeceEEEeecCCeeccccccCCCEEEEecCCc-cccCCeeccCCc---cccccCCcC-CCCeEEEEEEeC
Q psy5021 337 -------VKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKE-SSTGDTLCSLSE---NIQLENIET-PIPVISISIEPI 404 (1021)
Q Consensus 337 -------~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~gdtl~~~~~---~~~~~~~~~-~~Pv~~~~iep~ 404 (1021)
....|.+++...+++..+|++|+||.++.|.|+++ +.+..|+++... ...++++.+ +.|++++++||.
T Consensus 515 leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP~ 594 (971)
T KOG0468|consen 515 LEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEPL 594 (971)
T ss_pred CCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEeccC
Confidence 34578899999999999999999999999999987 678888887543 344666654 589999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc-CeeeEEeCCeEEEEeecccceeeee
Q psy5021 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQVSYKESIKKIVTQEG 483 (1021)
Q Consensus 405 ~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~-~v~v~~~~p~V~yrEti~~~~~~~~ 483 (1021)
+|++++||.+||++.++.+|.+... .+|+||++|.|.|||+|++++.+||+.| .+++++++|.|.|+||+.++++..
T Consensus 595 nPsELPKmldgLrKinKsYPl~~tk-VEESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssik- 672 (971)
T KOG0468|consen 595 NPSELPKMLDGLRKINKSYPLVITK-VEESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIK- 672 (971)
T ss_pred ChhhhhHHHHHHHhhcccCCcEEEe-hhhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchh-
Confidence 9999999999999999999999887 4799999999999999999999999999 999999999999999998866431
Q ss_pred EEEecCCCCceeEEEEEEEeecCC------CCC-------------------------------------CCceEEeccc
Q psy5021 484 KYIKQSGGKGQYGHVVIRIEPISL------ENK-------------------------------------ENFIFKSEII 520 (1021)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~P~~~------~~~-------------------------------------~~~~f~~~~~ 520 (1021)
++ ..+..+ -..+.+-+||++. ++| .+|.+.|.+.
T Consensus 673 cf-aetpnk--knkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTL 749 (971)
T KOG0468|consen 673 CF-AETPNK--KNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTL 749 (971)
T ss_pred hh-ccCCCc--cCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCcC
Confidence 11 111111 2457788888862 010 1245555555
Q ss_pred cCCCchh----hHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCCCHH--HHHHHHHHHHHHHHHhcCcceeee
Q psy5021 521 GGSIPKE----FIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEY--AFKNAAAIALKDALKKANSYILEP 594 (1021)
Q Consensus 521 ~~~~~~~----~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~--~~~~a~~~a~~~a~~~a~~~llEP 594 (1021)
..+++++ ++++|.+||+|++++||||+||+++|+++|.|+...+...+.+ ....+||++++.|+..|.|+||||
T Consensus 750 p~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP 829 (971)
T KOG0468|consen 750 PTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEP 829 (971)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhhcCc
Confidence 5555554 5777999999999999999999999999999998876544443 445699999999999999999999
Q ss_pred eEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCe--EEEEEEcchhhhccCCcccccceeeeeee
Q psy5021 595 IMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENF--KIINSYIPLRELFGYSTDLRSNTKGTIGH 659 (1021)
Q Consensus 595 ~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~~~~~~l~~~t~g~~g~ 659 (1021)
+|.|||++|.+++..|+..|++|||+|....+..|+ +.|+|++|+.++|||.++||..|+|.+-+
T Consensus 830 ~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C 896 (971)
T KOG0468|consen 830 VYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFC 896 (971)
T ss_pred eEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHH
Confidence 999999999999999999999999999988877664 89999999999999999999999999643
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-77 Score=707.56 Aligned_cols=460 Identities=26% Similarity=0.411 Sum_probs=407.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~li 82 (1021)
+.++||||+|+||+|||||||+++|++.+|.+... ..+.+++|+++.|++||+|++++.+++.|.. +++++.++||
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~---~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLi 79 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSER---EMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLI 79 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCccc---ccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEE
Confidence 56889999999999999999999999999988763 2367899999999999999999999999974 4567899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCcee
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 162 (1021)
|||||.+|..++.++++.+|++|+|||+++|++.|+...|..+...++|+++|+||+|+..++..+..+++.+.++.+
T Consensus 80 DTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-- 157 (600)
T PRK05433 80 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-- 157 (600)
T ss_pred ECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC--
Confidence 999999999999999999999999999999999999999999988899999999999998776665555555544321
Q ss_pred eeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~ 242 (1021)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T PRK05433 158 -------------------------------------------------------------------------------- 157 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEee
Q psy5021 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSG 322 (1021)
Q Consensus 243 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG 322 (1021)
..+++++||++|.|+++|+++|.+.+|+|... +++|+.++|||+++|+++|.++++||++|
T Consensus 158 --------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~-----------~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG 218 (600)
T PRK05433 158 --------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKGD-----------PDAPLKALIFDSWYDNYRGVVVLVRVVDG 218 (600)
T ss_pred --------cceEEEEecCCCCCHHHHHHHHHHhCccccCC-----------CCCCceEEEEEEEecCCCceEEEEEEEcC
Confidence 01378889999999999999999999999753 57899999999999999999999999999
Q ss_pred EEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe-c---CCccccCCeeccCCcc--ccccCCcCCCCe
Q psy5021 323 FIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV-G---LKESSTGDTLCSLSEN--IQLENIETPIPV 396 (1021)
Q Consensus 323 ~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~gdtl~~~~~~--~~~~~~~~~~Pv 396 (1021)
+|+.||.|++.+.+..+++.+++.+.+ +..+++++.||||+++. | ++++++||||++...+ ..+++++.|+|+
T Consensus 219 ~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~ 297 (600)
T PRK05433 219 TLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEVKPM 297 (600)
T ss_pred EEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCCCCCCcE
Confidence 999999999999999999999986555 78999999999999885 4 4568999999987765 468889999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEe-----cChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 397 ISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSG-----MGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 397 ~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g-----~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
++++++|.+.+|.++|.++|++|++|||||.++ +||++.++.| ||+|||||+++||+++||+++.+++|.|+|
T Consensus 298 v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v~~~~P~V~Y 375 (600)
T PRK05433 298 VFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVY 375 (600)
T ss_pred EEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHhhCceEEEecCEEEE
Confidence 999999999999999999999999999999997 6899999999 999999999999999999999999999999
Q ss_pred EeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceE
Q psy5021 472 KESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551 (1021)
Q Consensus 472 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~ 551 (1021)
|||+++. +++.|.+ | .|||
T Consensus 376 reti~~g--------------------------------~~~~~~~--------------------------p-~~~p-- 394 (600)
T PRK05433 376 EVTLTDG--------------------------------EVIEVDN--------------------------P-SKLP-- 394 (600)
T ss_pred EEEEeCC--------------------------------cEEEEEC--------------------------c-ccCC--
Confidence 9998751 0111211 1 2343
Q ss_pred EEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeE
Q psy5021 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFK 631 (1021)
Q Consensus 552 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 631 (1021)
||++++ .||||||+++|.+|++|+|+||++|++|||++.+++..+++.
T Consensus 395 --------------ds~~~~------------------~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~ 442 (600)
T PRK05433 395 --------------DPGKIE------------------EIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLGNRV 442 (600)
T ss_pred --------------Cccccc------------------eEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecCCeE
Confidence 455432 899999999999999999999999999999999999987889
Q ss_pred EEEEEcchhhh-ccCCcccccceeeeeeeeecc
Q psy5021 632 IINSYIPLREL-FGYSTDLRSNTKGTIGHVDHG 663 (1021)
Q Consensus 632 ~i~a~~P~~e~-~~~~~~l~~~t~g~~g~~~~G 663 (1021)
.|+|.+|++|+ ++|.++|+++|+|++.+...-
T Consensus 443 ~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~ 475 (600)
T PRK05433 443 ELTYELPLAEIVFDFFDRLKSVSRGYASLDYEF 475 (600)
T ss_pred EEEEEechHHhhhhHHHHhHhhcCCEEEEEEEE
Confidence 99999999999 999999999999999988753
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-76 Score=698.52 Aligned_cols=441 Identities=29% Similarity=0.434 Sum_probs=402.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
||||+|+||+|||||||+++|++.+|.+...+.++. +++|+.++|++||+|+.++..++.|+ ++++||||||||
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~--~~~D~~~~ErerGiTI~~~~~~v~~~----~~kinlIDTPGh 74 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE--RVMDSNDLERERGITILAKNTAIRYN----GTKINIVDTPGH 74 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee--ecccCchHHHhCCccEEeeeEEEEEC----CEEEEEEECCCH
Confidence 799999999999999999999999999888776654 69999999999999999999999999 999999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeee
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFN 167 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 167 (1021)
.||..++.++++.+|++|+|||+.+|++.||+.+|+.+...++|+++|+||+|++.+++.++++++.+.+..-
T Consensus 75 ~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~------- 147 (594)
T TIGR01394 75 ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL------- 147 (594)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh-------
Confidence 9999999999999999999999999999999999999999999999999999998888888888777765310
Q ss_pred cccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy5021 168 IGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVL 247 (1021)
Q Consensus 168 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~ 247 (1021)
. . +.
T Consensus 148 --------------------------------------------------g-~-------------~~------------ 151 (594)
T TIGR01394 148 --------------------------------------------------G-A-------------DD------------ 151 (594)
T ss_pred --------------------------------------------------c-c-------------cc------------
Confidence 0 0 00
Q ss_pred cCceeEEEeccccCcc----------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEE
Q psy5021 248 KNKIIPIMCGSSLKNK----------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFI 317 (1021)
Q Consensus 248 ~~~~~Pv~~~Sa~~~~----------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~ 317 (1021)
....+|++++||++|. |+++|++.|++++|+|... .++||.++||+++++++.|+++++
T Consensus 152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~-----------~~~pl~~~V~~i~~d~~~Grv~~g 220 (594)
T TIGR01394 152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGD-----------LDEPLQMLVTNLDYDEYLGRIAIG 220 (594)
T ss_pred ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCC-----------CCCCEEEEEEEEEeeCCCceEEEE
Confidence 0113689999999996 7999999999999999653 578999999999999999999999
Q ss_pred EEEeeEEecCCEEEeCCCc---eeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCcCCC
Q psy5021 318 RIYSGFIKVGDLVYNSTKK---VKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPI 394 (1021)
Q Consensus 318 RV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~~~~ 394 (1021)
||+||+|++||.|++.+.+ ..++|++|+.+.|.++.++++|.||||+++.|++++.+|||||+...+..++++++++
T Consensus 221 RV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~~~l~~~~~~~ 300 (594)
T TIGR01394 221 RVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVPEALPTITVDE 300 (594)
T ss_pred EEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCccccCCCCCCCC
Confidence 9999999999999987653 3579999999999999999999999999999999999999999998888899999999
Q ss_pred CeEEEEEEeCCC---CCHHH------HHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEe
Q psy5021 395 PVISISIEPIFK---NDQEK------LLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKIS 465 (1021)
Q Consensus 395 Pv~~~~iep~~~---~d~~k------l~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~ 465 (1021)
|+++++++|.+. .+..| |.++|.++.++||+|+++.++++++++|+|+|||||+|+++||+++ |+++.++
T Consensus 301 P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre-g~e~~~~ 379 (594)
T TIGR01394 301 PTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE-GFELQVG 379 (594)
T ss_pred CeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc-CceEEEe
Confidence 999999999865 33333 9999999999999999999999999999999999999999999999 9999999
Q ss_pred CCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcc
Q psy5021 466 KPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVV 545 (1021)
Q Consensus 466 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl 545 (1021)
+|+|+||| +.+
T Consensus 380 ~P~V~yre-i~g-------------------------------------------------------------------- 390 (594)
T TIGR01394 380 RPQVIYKE-IDG-------------------------------------------------------------------- 390 (594)
T ss_pred CCEEEEEe-CCC--------------------------------------------------------------------
Confidence 99999999 520
Q ss_pred cccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeee
Q psy5021 546 LGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTII 625 (1021)
Q Consensus 546 ~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~ 625 (1021)
.+|||||+++|.+|++|+|+||++|++|||++.+++
T Consensus 391 --------------------------------------------~llEPi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~ 426 (594)
T TIGR01394 391 --------------------------------------------KKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDME 426 (594)
T ss_pred --------------------------------------------eEECCEEEEEEEechHHHHHHHHHHHHhCCEEeccE
Confidence 468999999999999999999999999999999999
Q ss_pred ecC-CeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 626 DHE-NFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 626 ~~~-~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+.+ ++..|+|.+|++++++|..+|+++|.|.+.+...
T Consensus 427 ~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~ 464 (594)
T TIGR01394 427 PSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHV 464 (594)
T ss_pred ECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEE
Confidence 854 6899999999999999999999999999887654
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-76 Score=696.34 Aligned_cols=457 Identities=26% Similarity=0.405 Sum_probs=402.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDT 84 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDt 84 (1021)
++||||+|+||+|||||||+++|++.++.+... +.+.+++|+.++|++||+|++++.+++.|.. ++..+.++||||
T Consensus 1 ~~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~---~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDT 77 (595)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEYTGAISER---EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDT 77 (595)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHcCCCccc---cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEEC
Confidence 469999999999999999999999999888753 3467899999999999999999999999963 345689999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeee
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPI 164 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 164 (1021)
|||.+|..++.++++.+|++|+|+|+++|++.++...|..+...++|+++|+||+|+..++.++..+++.+.++..
T Consensus 78 PG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~---- 153 (595)
T TIGR01393 78 PGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD---- 153 (595)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999999999988888899999999999997666555555554444311
Q ss_pred eeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHH
Q psy5021 165 NFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRK 244 (1021)
Q Consensus 165 ~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~ 244 (1021)
T Consensus 154 -------------------------------------------------------------------------------- 153 (595)
T TIGR01393 154 -------------------------------------------------------------------------------- 153 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEE
Q psy5021 245 LVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFI 324 (1021)
Q Consensus 245 ~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l 324 (1021)
..+++++||++|.|+++|+++|.+++|+|... +++|+.++||++++|+++|.++++||++|+|
T Consensus 154 ------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~-----------~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~l 216 (595)
T TIGR01393 154 ------ASEAILASAKTGIGIEEILEAIVKRVPPPKGD-----------PDAPLKALIFDSHYDNYRGVVALVRVFEGTI 216 (595)
T ss_pred ------cceEEEeeccCCCCHHHHHHHHHHhCCCCCCC-----------CCCCeEEEEEEEEEeCCCcEEEEEEEECCEE
Confidence 11378899999999999999999999999763 5789999999999999999999999999999
Q ss_pred ecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe-c---CCccccCCeeccCCcc--ccccCCcCCCCeEE
Q psy5021 325 KVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV-G---LKESSTGDTLCSLSEN--IQLENIETPIPVIS 398 (1021)
Q Consensus 325 ~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~gdtl~~~~~~--~~~~~~~~~~Pv~~ 398 (1021)
++||.|++.+.++.+++.+++.+.+.. .+++++.||||+++. | ++++++||||++...+ ..++++++++|+++
T Consensus 217 k~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~ 295 (595)
T TIGR01393 217 KPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKEVKPMVF 295 (595)
T ss_pred ecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCCCCcCCCcEEE
Confidence 999999999989899999999666655 899999999998884 4 5668999999987765 36888999999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEe-----cChhHHHHHHHHHHhhcCeeeEEeCCeEEEEe
Q psy5021 399 ISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSG-----MGELHLEIIVDRILKENNIKTKISKPQVSYKE 473 (1021)
Q Consensus 399 ~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g-----~GelhLei~~~rL~~~~~v~v~~~~p~V~yrE 473 (1021)
++++|.+.+|.++|.+||++|++|||||.++ .||+|.++.| ||+|||||+++||+++||+++.+++|+|+|||
T Consensus 296 ~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~v~~~~P~V~Yre 373 (595)
T TIGR01393 296 AGLYPIDTEDYEDLRDALEKLKLNDASLTYE--PESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSVIYRV 373 (595)
T ss_pred EEEEECCcccHHHHHHHHHHHhccCCeEEEE--ecCCcccccccEEeeeeHHHHHHHHHHHHHHhCCeeEEecCEEEEEE
Confidence 9999999999999999999999999999997 4899988775 99999999999999999999999999999999
Q ss_pred ecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEE
Q psy5021 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKI 553 (1021)
Q Consensus 474 ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v 553 (1021)
|+++. + ++.|.+ | .|||+.|.
T Consensus 374 ti~~g---------------~-----------------~~~~~~--------------------------p-~~~p~~~~ 394 (595)
T TIGR01393 374 YLTNG---------------E-----------------VIEVDN--------------------------P-SDLPDPGK 394 (595)
T ss_pred EecCC---------------c-----------------EEEEEC--------------------------c-ccCCCccc
Confidence 98641 1 111221 2 37887652
Q ss_pred EEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC-CeEE
Q psy5021 554 KVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE-NFKI 632 (1021)
Q Consensus 554 ~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~ 632 (1021)
-|.||||||+++|.+|++|+|+||++|++|||++.+++..+ ++..
T Consensus 395 ----------------------------------~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~~ 440 (595)
T TIGR01393 395 ----------------------------------IEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVE 440 (595)
T ss_pred ----------------------------------ccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCCCeEE
Confidence 27999999999999999999999999999999999999854 5899
Q ss_pred EEEEcchhhh-ccCCcccccceeeeeeeeec
Q psy5021 633 INSYIPLREL-FGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 633 i~a~~P~~e~-~~~~~~l~~~t~g~~g~~~~ 662 (1021)
|+|.+|++|+ ++|.++|+++|.|++.+...
T Consensus 441 i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~ 471 (595)
T TIGR01393 441 LIYEMPLAEIVYDFFDKLKSISRGYASFDYE 471 (595)
T ss_pred EEEEeccchhhhchhHHhhhhcCCEEEEEEE
Confidence 9999999997 99999999999999988765
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-75 Score=684.12 Aligned_cols=444 Identities=27% Similarity=0.415 Sum_probs=401.7
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++||||+|+||+|||||||+++|++.+|.+...+... .+++|+.+.|+++|+|+.+...++.|+ ++.+++|||
T Consensus 2 ~~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~v~D~~~~E~erGiTi~~~~~~i~~~----~~~inliDT 75 (607)
T PRK10218 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQ--ERVMDSNDLEKERGITILAKNTAIKWN----DYRINIVDT 75 (607)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccc--eeeeccccccccCceEEEEEEEEEecC----CEEEEEEEC
Confidence 46899999999999999999999999988877654433 489999999999999999999999998 999999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeee
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPI 164 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 164 (1021)
|||.+|..++.++++.+|++|+|+|+.+|++.|++.+|+.+...++|.++|+||+|+++++++++++++.+.+..-
T Consensus 76 PG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l---- 151 (607)
T PRK10218 76 PGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL---- 151 (607)
T ss_pred CCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999888888776310
Q ss_pred eeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHH
Q psy5021 165 NFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRK 244 (1021)
Q Consensus 165 ~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~ 244 (1021)
+ ...
T Consensus 152 --------------~-----------------------------------------------------~~~--------- 155 (607)
T PRK10218 152 --------------D-----------------------------------------------------ATD--------- 155 (607)
T ss_pred --------------C-----------------------------------------------------ccc---------
Confidence 0 000
Q ss_pred HHhcCceeEEEeccccCcc----------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceE
Q psy5021 245 LVLKNKIIPIMCGSSLKNK----------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSL 314 (1021)
Q Consensus 245 ~~~~~~~~Pv~~~Sa~~~~----------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~ 314 (1021)
...-+|++++||++|. |+.+||++|.+++|+|... +++||.++|||++++++.|++
T Consensus 156 ---~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~-----------~~~Pl~~~V~k~~~d~~~G~i 221 (607)
T PRK10218 156 ---EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVD-----------LDGPFQMQISQLDYNSYVGVI 221 (607)
T ss_pred ---cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCC-----------CCCCeEEEEEeeEecCCCcEE
Confidence 0112789999999998 6999999999999999642 578999999999999999999
Q ss_pred EEEEEEeeEEecCCEEEeCCC-ce--eeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCc
Q psy5021 315 SFIRIYSGFIKVGDLVYNSTK-KV--KEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIE 391 (1021)
Q Consensus 315 ~~~RV~sG~l~~gd~v~~~~~-~~--~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~ 391 (1021)
+++||++|+|+.||.|++.+. ++ +++|++||.+.|.++.++++|.||||++++|++++.+|||||+...+..+++++
T Consensus 222 ~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~ 301 (607)
T PRK10218 222 GIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALS 301 (607)
T ss_pred EEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCCCcccCCCCC
Confidence 999999999999999998765 33 689999999999999999999999999999999999999999988888889999
Q ss_pred CCCCeEEEEEEeCC---CCCHHHHHH---HHHHHHH---cCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeee
Q psy5021 392 TPIPVISISIEPIF---KNDQEKLLN---ILQKFCK---EDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKT 462 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~---~~d~~kl~~---~L~~L~~---eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v 462 (1021)
+++|++++++.|.+ ..|..|+.. +|++|.+ +||+|+++.+++|+|++|+|+|||||+|+++||+++ |+++
T Consensus 302 ~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre-g~e~ 380 (607)
T PRK10218 302 VDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE-GFEL 380 (607)
T ss_pred CCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC-CceE
Confidence 99999999999999 778889854 5555555 999999999999999999999999999999999999 9999
Q ss_pred EEeCCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhc
Q psy5021 463 KISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINY 542 (1021)
Q Consensus 463 ~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~ 542 (1021)
.+++|+|+|||| . |
T Consensus 381 ~~~~P~V~yret--~--------------------------------g-------------------------------- 394 (607)
T PRK10218 381 AVSRPKVIFREI--D--------------------------------G-------------------------------- 394 (607)
T ss_pred EEeCCEEEEEEE--C--------------------------------C--------------------------------
Confidence 999999999998 0 0
Q ss_pred CcccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEe
Q psy5021 543 GVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIIN 622 (1021)
Q Consensus 543 Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~ 622 (1021)
+.||||++++|.+|++|+|+||++|++|||+++
T Consensus 395 -----------------------------------------------~klEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~ 427 (607)
T PRK10218 395 -----------------------------------------------RKQEPYENVTLDVEEQHQGSVMQALGERKGDLK 427 (607)
T ss_pred -----------------------------------------------EEeCCeEEEEEEechhhHHHHHHHHHhcCCEEe
Confidence 015999999999999999999999999999999
Q ss_pred eeeec-CCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 623 TIIDH-ENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 623 ~~~~~-~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+++.. +++..|+|.+|++++++|..+|+++|.|.+.+...
T Consensus 428 ~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~ 468 (607)
T PRK10218 428 NMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYST 468 (607)
T ss_pred ccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEE
Confidence 99985 46899999999999999999999999999877653
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-74 Score=670.81 Aligned_cols=444 Identities=24% Similarity=0.410 Sum_probs=395.1
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccC-C---cccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHH-G---TTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~-~---~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
...++|||+|+||+|||||||+++|++.+|.+...|.+++ + .+++||++.|++||+|+.++...+.|+ ++++
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~----~~~i 82 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR----DCLV 82 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC----CeEE
Confidence 4678999999999999999999999999999999998873 3 488999999999999999999999999 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
||||||||.+|..++.++++.+|++|+|+|++.|++.+++.+|+.+...++|+++|+||+|+.++++.++++++++.++.
T Consensus 83 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 83 NLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred EEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCC---eeec------cCChh----hHHHHHHHHHHHHHHhcCCCHHHHH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENS---IIIK------NIDKD----QLSAFDYYNELMLETLSNNDEFFLE 226 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~---~~~~------~~~~~----~~~~~~~~~~~l~e~~~~~d~~l~e 226 (1021)
.+.+.++|++.+..|.|++|++.++.++|..+. .... +.|.. ..+..+++++++ |.+.+.+++
T Consensus 163 ~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~~--- 238 (527)
T TIGR00503 163 NCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASNE--- 238 (527)
T ss_pred CCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhccc---
Confidence 999999999999999999999999999996431 2111 11111 112334455555 666655543
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEe
Q psy5021 227 KYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIF 306 (1021)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~ 306 (1021)
++ .+++..+.++|||||||.+|.||++|||+|++++|+|.+++.. .......++|++++|||+.
T Consensus 239 ------~~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~--~~~~~~~~~~~~~~VFK~~ 302 (527)
T TIGR00503 239 ------FD--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSD--TRTVEPTEEKFSGFVFKIQ 302 (527)
T ss_pred ------cC--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCC--ceecCCCCCCeeEEEEEEE
Confidence 22 3567789999999999999999999999999999999864321 0111225678999999999
Q ss_pred e--c-CCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCc
Q psy5021 307 H--D-PFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSE 383 (1021)
Q Consensus 307 ~--~-~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~ 383 (1021)
+ | +++|+++|+|||||+|++||.|++.++++++++.+++.++|++++++++|.||||+++.|++++++|||||+. .
T Consensus 303 ~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~~~-~ 381 (527)
T TIGR00503 303 ANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQG-E 381 (527)
T ss_pred eccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEecCC-C
Confidence 8 8 4899999999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred cccccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeE
Q psy5021 384 NIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTK 463 (1021)
Q Consensus 384 ~~~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~ 463 (1021)
+..++++++|+|+++++|+|+++.|.+||.+||++|++||| +++.++++|+|++|+|||||||||+++||+++||+++.
T Consensus 382 ~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey~v~v~ 460 (527)
T TIGR00503 382 KIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEYNVEAR 460 (527)
T ss_pred ceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHhCCeEE
Confidence 67788899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EeCCeEEEEe
Q psy5021 464 ISKPQVSYKE 473 (1021)
Q Consensus 464 ~~~p~V~yrE 473 (1021)
+++|+|+.--
T Consensus 461 ~~~~~v~~~r 470 (527)
T TIGR00503 461 YEPVNVATAR 470 (527)
T ss_pred EeCCCceEEE
Confidence 9999998553
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-74 Score=646.79 Aligned_cols=634 Identities=23% Similarity=0.345 Sum_probs=469.9
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+.|||||+++|+|||||||+++|+..+|.|+. ++.+.-+++|++++|+.||||++++.++...+ +|.+||||
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~--rlagkirfld~redeq~rgitmkss~is~~~~----~~~~nlid 78 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISS--RLAGKIRFLDTREDEQTRGITMKSSAISLLHK----DYLINLID 78 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEech--hhccceeeccccchhhhhceeeeccccccccC----ceEEEEec
Confidence 6789999999999999999999999999998876 33445789999999999999999999998888 99999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCC----H-------HHHHHH
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGAN----Y-------NNCIID 152 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~----~-------~~~~~~ 152 (1021)
+|||+||++++.+|.+.+|+|+++||+.+|++.||..+++|+...+...++|+||||+...+ + -+++++
T Consensus 79 spghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 79 SPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred CCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976433 2 234445
Q ss_pred HHHHhCCc---eeeee----------e---ecccCCceeeEEe--------------------cccceeeeecCCC----
Q psy5021 153 IKKKFNCI---VLPIN----------F---NIGIEENYEGIVD--------------------IINKKSFFWKENS---- 192 (1021)
Q Consensus 153 i~~~l~~~---~~~~~----------~---p~~~~~~~~g~id--------------------~~~~~~~~~~~~~---- 192 (1021)
++..+|.- .+.++ + |-..+--|....| -.......|.+.+
T Consensus 159 vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~k 238 (887)
T KOG0467|consen 159 VNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPK 238 (887)
T ss_pred hhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecch
Confidence 55444310 00000 0 0000000110000 0000112222111
Q ss_pred -------eeeccCChhhHHHHHHHHHHHHHH-hcCCCHHHHHHHHcC---CCCHHHHHHHHHHHHhcCceeEEEeccccC
Q psy5021 193 -------IIIKNIDKDQLSAFDYYNELMLET-LSNNDEFFLEKYINN---NYSINDIKNSIRKLVLKNKIIPIMCGSSLK 261 (1021)
Q Consensus 193 -------~~~~~~~~~~~~~~~~~~~~l~e~-~~~~d~~l~e~~l~~---~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~ 261 (1021)
.......+-+.+...+..|++++. +...|-+-+++.... .+.+++++..+... .+.|+|+
T Consensus 239 tk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~i--m~~wLPl------- 309 (887)
T KOG0467|consen 239 TKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAI--MSTWLPL------- 309 (887)
T ss_pred hhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHHH--HHhhccc-------
Confidence 001111223344555667788884 444566667777765 56667766333322 2578887
Q ss_pred cccHHHHHHHHHHhCCCCccccccC------C-c---------ccccc-CCCceEEEEEEEeecC-----CCceEEEEEE
Q psy5021 262 NKGIEFLLNSICEYLPSPYDVDFKN------N-D---------YNINL-NSNKFVSLVFKIFHDP-----FLGSLSFIRI 319 (1021)
Q Consensus 262 ~~Gi~~Ll~~i~~~lP~p~~~~~~~------~-~---------~~~~~-~~~p~~~~V~k~~~~~-----~~g~~~~~RV 319 (1021)
-+..+-+.+.++|+|.+.+..+ . + ....| +++|..+||.|+...+ ....++|+||
T Consensus 310 ---s~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari 386 (887)
T KOG0467|consen 310 ---SDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARI 386 (887)
T ss_pred ---ccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeee
Confidence 2466677778999988754322 0 0 01234 7899999999998544 3236899999
Q ss_pred EeeEEecCCEEEeCCC-------ceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCcccc-ccCCc
Q psy5021 320 YSGFIKVGDLVYNSTK-------KVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQ-LENIE 391 (1021)
Q Consensus 320 ~sG~l~~gd~v~~~~~-------~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~-~~~~~ 391 (1021)
||||++.||.+|..+. -...+|.++|.++|+..+|.+++++|++++|.|-+......|||+.....+ +....
T Consensus 387 ~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f 466 (887)
T KOG0467|consen 387 FSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNF 466 (887)
T ss_pred ccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeee
Confidence 9999999999996544 245689999999999999999999999999999444778899999744333 33233
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc-CeeeEEeCCeEE
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQVS 470 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~-~v~v~~~~p~V~ 470 (1021)
..+|.++++|+|.+|.|+++|.++|+.|++-||++.+.. +++||+++...||+|||.|+.+|++ | ++++++|+|.|+
T Consensus 467 ~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v-~~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~vSeP~vp 544 (887)
T KOG0467|consen 467 QITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRV-EENGEHVLVTAGEVHLERCLKDLKE-FAKIEISVSEPLVP 544 (887)
T ss_pred eeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHH-hhccceeeeeccHHHHHHHHHHHhh-hhceEEEecCCccc
Confidence 349999999999999999999999999999999999985 6899999999999999999999999 7 999999999999
Q ss_pred EEeecccceeeee--EEEecCC--CCceeEEEEEEEeecCCC--------------------------------------
Q psy5021 471 YKESIKKIVTQEG--KYIKQSG--GKGQYGHVVIRIEPISLE-------------------------------------- 508 (1021)
Q Consensus 471 yrEti~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~P~~~~-------------------------------------- 508 (1021)
||||+.+.+...- .+.++.. ..++ -.+.+++.|+..-
T Consensus 545 frET~~e~s~l~~~~~I~~~~~~~~~~~-~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls 623 (887)
T KOG0467|consen 545 FRETIIEDSDLLANLSIGQETKCLPRGQ-LKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLS 623 (887)
T ss_pred hhhhccccchhhhhhhcCcccccccccc-eeEEeeecccccceeccccccchhccchhcccccccccccccccccccccc
Confidence 9999955442210 0000000 0000 1223333333210
Q ss_pred --------------------------------CCCCceEEecc-------ccCC-CchhhHHHHHHHHHHHHhcCccccc
Q psy5021 509 --------------------------------NKENFIFKSEI-------IGGS-IPKEFIPAIEKGIMNQINYGVVLGY 548 (1021)
Q Consensus 509 --------------------------------~~~~~~f~~~~-------~~~~-~~~~~~~~i~~g~~~~~~~Gpl~g~ 548 (1021)
-|.++.|...- .+.. +++ +-+++..||+.++..||||.|
T Consensus 624 ~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~-l~~~ivsgfql~~~sGPlc~E 702 (887)
T KOG0467|consen 624 LLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVAR-LSESIVSGFQLATSSGPLCNE 702 (887)
T ss_pred HHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHH-HHHHHhhhHhhhhccCccccc
Confidence 00011111000 0000 112 558899999999999999999
Q ss_pred ceEEEEEEEEeeeeccCCC---CHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeee
Q psy5021 549 PVIKIKVFLVNGSFHSVDS---SEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTII 625 (1021)
Q Consensus 549 pv~~v~v~l~~~~~~~~~s---~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~ 625 (1021)
|+.|++|.+..+...+..+ ..++...|++.+|++|++...|||+.|||.|+|++..|++|++|++|++|+|+|++++
T Consensus 703 p~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEe 782 (887)
T KOG0467|consen 703 PMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEE 782 (887)
T ss_pred CcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhhh
Confidence 9999999998855544333 1245567999999999999999999999999999999999999999999999999999
Q ss_pred ecCC--eEEEEEEcchhhhccCCcccccceeeeeee
Q psy5021 626 DHEN--FKIINSYIPLRELFGYSTDLRSNTKGTIGH 659 (1021)
Q Consensus 626 ~~~~--~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~ 659 (1021)
+.+| .|.|+|++|+.|+|||++++|..|+|.+..
T Consensus 783 m~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~p 818 (887)
T KOG0467|consen 783 MKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASP 818 (887)
T ss_pred hhCCCCcEEEEEEeeeeccccHHHHHhhccccccch
Confidence 8875 599999999999999999999999998643
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-72 Score=596.24 Aligned_cols=459 Identities=28% Similarity=0.422 Sum_probs=403.4
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~li 82 (1021)
+.++|||++|++|+|||||||+++|+..+|.+... +-...++|+++.|+||||||+.+.+++.|+. +++.|.+|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~R---em~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlI 81 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSER---EMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLI 81 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChH---HHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEc
Confidence 78999999999999999999999999999887652 3346899999999999999999999999997 5688999999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCcee
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 162 (1021)
|||||+||+.++.++|..|+||||||||+.|+++||......+...++-+|.|+||+|++.++++++.+++.+.+|.++
T Consensus 82 DTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~- 160 (603)
T COG0481 82 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA- 160 (603)
T ss_pred CCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998642
Q ss_pred eeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~ 242 (1021)
.+
T Consensus 161 -------------------------------------------------------------------------~d----- 162 (603)
T COG0481 161 -------------------------------------------------------------------------SD----- 162 (603)
T ss_pred -------------------------------------------------------------------------ch-----
Confidence 01
Q ss_pred HHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEee
Q psy5021 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSG 322 (1021)
Q Consensus 243 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG 322 (1021)
.+.+||++|.||+++|++|++.+|+|... +++|+.|++|..++|+++|.++++||+.|
T Consensus 163 -----------av~~SAKtG~gI~~iLe~Iv~~iP~P~g~-----------~~~pLkALifDS~yD~Y~GVv~~vRi~dG 220 (603)
T COG0481 163 -----------AVLVSAKTGIGIEDVLEAIVEKIPPPKGD-----------PDAPLKALIFDSWYDNYLGVVVLVRIFDG 220 (603)
T ss_pred -----------heeEecccCCCHHHHHHHHHhhCCCCCCC-----------CCCcceEEEEeccccccceEEEEEEEeec
Confidence 45679999999999999999999999865 78999999999999999999999999999
Q ss_pred EEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE-ecCC---ccccCCeeccCCc--cccccCCcCCCCe
Q psy5021 323 FIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI-VGLK---ESSTGDTLCSLSE--NIQLENIETPIPV 396 (1021)
Q Consensus 323 ~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i-~gl~---~~~~gdtl~~~~~--~~~~~~~~~~~Pv 396 (1021)
++++||++....++++..|.++..+.. ...+.+++.||+++.+ +|++ +++.|||++.... ..++++++-..|+
T Consensus 221 ~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~~P~ 299 (603)
T COG0481 221 TLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVKPM 299 (603)
T ss_pred eecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcCCce
Confidence 999999999999999999998876665 6788999999999988 5665 4789999985443 3567888889999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEE-----ecChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 397 ISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILS-----GMGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 397 ~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~-----g~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
+++.+.|.+..|.+.|.+||.+|..+|.+|.++ +||.+.+-. .+|-|||||+++||+|||++++....|.|.|
T Consensus 300 Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E--~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~TaPsV~Y 377 (603)
T COG0481 300 VFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVY 377 (603)
T ss_pred EEEeecccChhHHHHHHHHHHhcccccceeeec--cccchhccCceeehhhhHHHHHHHHHHHHHhhCcceEecCCceEE
Confidence 999999999999999999999999999999997 577765543 4799999999999999999999999999999
Q ss_pred EeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceE
Q psy5021 472 KESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551 (1021)
Q Consensus 472 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~ 551 (1021)
+-..+... ...--.|.. +|.
T Consensus 378 ~v~~~~g~------------------~~~i~NPs~-----------------~P~------------------------- 397 (603)
T COG0481 378 KVELTDGE------------------EIEVDNPSD-----------------LPD------------------------- 397 (603)
T ss_pred EEEEcCCc------------------EEEecChHh-----------------CCC-------------------------
Confidence 96544311 100011211 111
Q ss_pred EEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC-Ce
Q psy5021 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE-NF 630 (1021)
Q Consensus 552 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~ 630 (1021)
.+. --.+.||+.+++|.+|+||+|.||..++.+||...+++.-+ .+
T Consensus 398 ---------------~~~------------------I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~~r 444 (603)
T COG0481 398 ---------------PNK------------------IEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQNR 444 (603)
T ss_pred ---------------hhh------------------hheeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecCce
Confidence 000 01567999999999999999999999999999999999877 78
Q ss_pred EEEEEEcchhhh-ccCCcccccceeeeeeeeec
Q psy5021 631 KIINSYIPLREL-FGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 631 ~~i~a~~P~~e~-~~~~~~l~~~t~g~~g~~~~ 662 (1021)
..+...+|++|. +.|.+.|+|.|.|++++.-.
T Consensus 445 v~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe 477 (603)
T COG0481 445 VMLTYELPLAEIVFDFFDKLKSISKGYASFDYE 477 (603)
T ss_pred EEEEEecchHHHHHHHhHhhhccccceeeeccc
Confidence 999999999999 68999999999999988654
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-71 Score=601.69 Aligned_cols=459 Identities=27% Similarity=0.423 Sum_probs=394.1
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
|.++|||++|++|+|||||||+++|+..+|.+... ....+++|..+.|+||||||++...++.|.. ++.|.+|+||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~---~~q~q~LDkl~vERERGITIkaQtasify~~-~~~ylLNLID 131 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN---IGQEQVLDKLQVERERGITIKAQTASIFYKD-GQSYLLNLID 131 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCC---CchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-CCceEEEeec
Confidence 56899999999999999999999999999977652 2347899999999999999999999999995 6679999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||+||+.|+.+++..||||||||||++|+++||...+..+.+.++.+|.|+||+|++.++++++..++.+.++..+
T Consensus 132 TPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~-- 209 (650)
T KOG0462|consen 132 TPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP-- 209 (650)
T ss_pred CCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998886431
Q ss_pred eeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIR 243 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~ 243 (1021)
T Consensus 210 -------------------------------------------------------------------------------- 209 (650)
T KOG0462|consen 210 -------------------------------------------------------------------------------- 209 (650)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeE
Q psy5021 244 KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323 (1021)
Q Consensus 244 ~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~ 323 (1021)
-+++.+||++|.|++++|++|++.+|+|... .++||.+++|.+++|+++|.++++||..|.
T Consensus 210 --------~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~-----------~d~plr~Lifds~yD~y~G~I~~vrv~~G~ 270 (650)
T KOG0462|consen 210 --------AEVIYVSAKTGLNVEELLEAIIRRVPPPKGI-----------RDAPLRMLIFDSEYDEYRGVIALVRVVDGV 270 (650)
T ss_pred --------cceEEEEeccCccHHHHHHHHHhhCCCCCCC-----------CCcchHHHhhhhhhhhhcceEEEEEEeeee
Confidence 1378899999999999999999999999875 689999999999999999999999999999
Q ss_pred EecCCEEEeCCCceeeEeceEEEe--ecCCeeccccccCCCEEEEec-CCccccCCeeccCC---ccccccCCcCCCCeE
Q psy5021 324 IKVGDLVYNSTKKVKEKIFRILRM--FANSKKDINDAHFGDIVVIVG-LKESSTGDTLCSLS---ENIQLENIETPIPVI 397 (1021)
Q Consensus 324 l~~gd~v~~~~~~~~~~i~~i~~~--~g~~~~~v~~a~aGdIv~i~g-l~~~~~gdtl~~~~---~~~~~~~~~~~~Pv~ 397 (1021)
+++||+|....+++...++.+-.| ..-...+++...+|+|++-.+ +++.+.|||++... ....++..+...|++
T Consensus 271 vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~~pMv 350 (650)
T KOG0462|consen 271 VRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPTKPMV 350 (650)
T ss_pred eecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcccCcCCCCCCCcceE
Confidence 999999998887766655555333 333444555566666666655 77899999999866 234567777889999
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCC----cEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEEEe
Q psy5021 398 SISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTG----ETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKE 473 (1021)
Q Consensus 398 ~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etg----e~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~yrE 473 (1021)
++...|.+.+|...|.+++.+|+.+|+++.+..+ .++ -|.++++|+|||||+.+||++|||.++.+++|.|+||-
T Consensus 351 Fvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~-~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Yr~ 429 (650)
T KOG0462|consen 351 FVGLFPLDGSDYETLRDAIERLVLNDESVTVIKE-SSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTPPTVPYRV 429 (650)
T ss_pred EeccccCccchhhhHHHHHHHHhcccccceeeec-CCcccccceEeeccceeeHHHHHHHHHHhcCceeeecCCcceEEE
Confidence 9999999999999999999999999999999864 444 37899999999999999999999999999999999995
Q ss_pred ecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEE
Q psy5021 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKI 553 (1021)
Q Consensus 474 ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v 553 (1021)
-..+..+ ..-..|. .|.+.
T Consensus 430 ~~~~~~~------------------~~i~np~--------~fp~~----------------------------------- 448 (650)
T KOG0462|consen 430 VYSNGDE------------------ILISNPA--------LFPDP----------------------------------- 448 (650)
T ss_pred EecCCce------------------eeecChh--------hCCCc-----------------------------------
Confidence 4332110 0111221 11110
Q ss_pred EEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeec-CCeEE
Q psy5021 554 KVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDH-ENFKI 632 (1021)
Q Consensus 554 ~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~ 632 (1021)
+. -..++||+...+|.+|+||+|.|+..++.|||...++... +.+..
T Consensus 449 -------------~~-------------------v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~nr~~ 496 (650)
T KOG0462|consen 449 -------------SD-------------------VKEFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDGNRVM 496 (650)
T ss_pred -------------cc-------------------chhhcCceEEEEEECcHHHHHHHHHHHHHhhhheecceeccCCeEE
Confidence 00 1146799999999999999999999999999999999877 46799
Q ss_pred EEEEcchhhhcc-CCcccccceeeeeeeee
Q psy5021 633 INSYIPLRELFG-YSTDLRSNTKGTIGHVD 661 (1021)
Q Consensus 633 i~a~~P~~e~~~-~~~~l~~~t~g~~g~~~ 661 (1021)
++..+|++++.+ |.+.|++.|.|++.+.-
T Consensus 497 lky~lPl~elv~df~~~lks~tsGyAs~dy 526 (650)
T KOG0462|consen 497 LKYQLPLRELVGDFFDRLKSLTSGYASFDY 526 (650)
T ss_pred EEEecChHHHHHHHHHHHhccccceeEEee
Confidence 999999999988 99999999999988754
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-66 Score=551.94 Aligned_cols=438 Identities=29% Similarity=0.448 Sum_probs=395.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
..+|||||++|+|||||||++.||.++|.....+.+. .++||+...|+||||||-+....+.|+ +++||++|||
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~--ERvMDSnDlEkERGITILaKnTav~~~----~~~INIvDTP 76 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVA--ERVMDSNDLEKERGITILAKNTAVNYN----GTRINIVDTP 76 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchh--hhhcCccchhhhcCcEEEeccceeecC----CeEEEEecCC
Confidence 5799999999999999999999999999988755553 589999999999999999999999999 9999999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeee
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 165 (1021)
||.||.+++++.+...|+++|+|||.+|..+||+.+++.+.+.+++.|+|+||+|+++++++++++++.+.|-
T Consensus 77 GHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~------- 149 (603)
T COG1217 77 GHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFV------- 149 (603)
T ss_pred CcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877651
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
.+...| ++
T Consensus 150 --------------------------------------------------~L~A~d--------------eQ-------- 157 (603)
T COG1217 150 --------------------------------------------------ELGATD--------------EQ-------- 157 (603)
T ss_pred --------------------------------------------------HhCCCh--------------hh--------
Confidence 011111 11
Q ss_pred HhcCceeEEEeccccCcc----------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEE
Q psy5021 246 VLKNKIIPIMCGSSLKNK----------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLS 315 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~----------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~ 315 (1021)
--+|++..||+.|. ..++|++.|.+|+|+|... .++||.++|+...++++.|++.
T Consensus 158 ----LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~-----------~d~PlQ~qvt~Ldyn~y~GrIg 222 (603)
T COG1217 158 ----LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGD-----------LDEPLQMQVTQLDYNSYVGRIG 222 (603)
T ss_pred ----CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCC-----------CCCCeEEEEEeeccccccceeE
Confidence 12678888888764 2679999999999999864 6899999999999999999999
Q ss_pred EEEEEeeEEecCCEEEeCCCc---eeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCcC
Q psy5021 316 FIRIYSGFIKVGDLVYNSTKK---VKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIET 392 (1021)
Q Consensus 316 ~~RV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~~ 392 (1021)
.+||++|++++|+.|.....+ +..||.+++-+.|-++.++++|.||||++|+|+.++..|||+|++..+..++.+.+
T Consensus 223 igRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~~~~~aLp~l~i 302 (603)
T COG1217 223 IGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSV 302 (603)
T ss_pred EEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCCCCccCCCCccc
Confidence 999999999999999865443 45689999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEeCCCC---------CHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeE
Q psy5021 393 PIPVISISIEPIFKN---------DQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTK 463 (1021)
Q Consensus 393 ~~Pv~~~~iep~~~~---------d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~ 463 (1021)
-+|.+++.+...++. -..++.+.|.+-.+.+-+|+++..++-..|.++|.|||||-|+++.+||| |.|+.
T Consensus 303 DePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE-GfEl~ 381 (603)
T COG1217 303 DEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE-GFELQ 381 (603)
T ss_pred CCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc-ceEEE
Confidence 999999999877652 25789999999999999999997666688999999999999999999999 99999
Q ss_pred EeCCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcC
Q psy5021 464 ISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYG 543 (1021)
Q Consensus 464 ~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~G 543 (1021)
+|.|+|.||| +.+
T Consensus 382 VsrP~Vi~ke-idG------------------------------------------------------------------ 394 (603)
T COG1217 382 VSRPEVIIKE-IDG------------------------------------------------------------------ 394 (603)
T ss_pred ecCceEEEEe-cCC------------------------------------------------------------------
Confidence 9999999998 321
Q ss_pred cccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEee
Q psy5021 544 VVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINT 623 (1021)
Q Consensus 544 pl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~ 623 (1021)
..+||+-.+.|.||++|.|.|+..|..|+|...+
T Consensus 395 ----------------------------------------------~~~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~ 428 (603)
T COG1217 395 ----------------------------------------------VKCEPFEEVTIDVPEEHQGAVIEKLGERKGEMKD 428 (603)
T ss_pred ----------------------------------------------cCcCcceeEEecCchhhhhHHHHHHhhhhHhHhh
Confidence 2348999999999999999999999999999999
Q ss_pred eeecC-CeEEEEEEcchhhhccCCcccccceeeee
Q psy5021 624 IIDHE-NFKIINSYIPLRELFGYSTDLRSNTKGTI 657 (1021)
Q Consensus 624 ~~~~~-~~~~i~a~~P~~e~~~~~~~l~~~t~g~~ 657 (1021)
+.+.+ |+.++...+|...+.||.+++-+.|.|.+
T Consensus 429 M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~G 463 (603)
T COG1217 429 MAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTG 463 (603)
T ss_pred cccCCCCeEEEEEEccCcceeccchheeeccccce
Confidence 99875 78999999999999999999999999985
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=545.59 Aligned_cols=364 Identities=32% Similarity=0.506 Sum_probs=331.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccc---------------cccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEI---------------YGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~---------------~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..++..+.||+|||||||+++|+...+.+ +...+...|.||++++||+||+|++.++..|+++.+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 45678899999999999999998544333 234445667899999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELL 786 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~ 786 (1021)
.++++|+|||++|+++|+.++++||+|||||||+.+ ..+||+||+.+++.+|+.++||++||||+++ ++++|
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf 165 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERF 165 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHH
Confidence 999999999999999999999999999999999998 6799999999999999999999999999996 67899
Q ss_pred HHHHHHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCC
Q psy5021 787 DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG 865 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g 865 (1021)
+++++++..+++.+||+.++++|+|+||++|.|..... ...||..++|+++|+. +..|.++.++|||++|+++|++.|
T Consensus 166 ~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd~-~~~p~~~~d~Plr~pI~~v~~i~~ 244 (428)
T COG5256 166 EEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQ-LEPPERPLDKPLRLPIQDVYSISG 244 (428)
T ss_pred HHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHhc-cCCCCCCCCCCeEeEeeeEEEecC
Confidence 99999999999999999889999999999997765443 6789999999999994 777889999999999999999999
Q ss_pred ceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-ccce
Q psy5021 866 RGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSY 944 (1021)
Q Consensus 866 ~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~ 944 (1021)
.|+|..|+|++|.|++||+|.+.|.+ ...+|+||++|+++.+.|.+||+|++++++++.+||++|||+++++. +..+
T Consensus 245 ~gtv~vGrVEsG~i~~g~~v~~~p~~--~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t~s 322 (428)
T COG5256 245 IGTVPVGRVESGVIKPGQKVTFMPAG--VVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNPPTVS 322 (428)
T ss_pred CceEEEEEEeeeeeccCCEEEEecCc--ceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCCCcccc
Confidence 99999999999999999999999865 56899999999999999999999999999999999999999998774 5667
Q ss_pred eeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeee-cc------------CCCcccccCCCeEEEEEEEceeeec
Q psy5021 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGIC-KL------------PENVEMVLPGDNIKLNVTLLSSIAI 1011 (1021)
Q Consensus 945 ~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~-~~------------~~~~~~l~~g~~~~v~~~~~~pi~~ 1011 (1021)
.+|.|++.++.|+ .+|.+||+|++|+|++.++|++ ++ .+++.++++|+.++|.+++++|+|+
T Consensus 323 ~~f~a~i~vl~~p-----~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~~~ 397 (428)
T COG5256 323 PEFTAQIIVLWHP-----GIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPLCL 397 (428)
T ss_pred cceEEEEEEEecC-----ccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCceEe
Confidence 8999999999998 5999999999999999999765 22 2468999999999999999999999
Q ss_pred ccC------CeEEEeC
Q psy5021 1012 EIG------LRFAIRE 1021 (1021)
Q Consensus 1012 ~~~------~rf~lr~ 1021 (1021)
+.. +||+|||
T Consensus 398 e~~~~~~~Lgrfalrd 413 (428)
T COG5256 398 EKVSEIPQLGRFALRD 413 (428)
T ss_pred eecccCCccceEEEEe
Confidence 865 7999997
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=543.07 Aligned_cols=439 Identities=26% Similarity=0.448 Sum_probs=381.4
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCC----cccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHG----TTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
...+.|++|||.|+|||||||++.||...|+|..+|.|... .+.+||++.|++|||++.+++..|.|. ++.+
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~----~~~i 83 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA----DCLV 83 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC----CeEE
Confidence 46788999999999999999999999999999999988643 678999999999999999999999999 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
||+|||||.||+..+.+.|..+|.||+||||..|+++||+.+++-|+.+++|++-|+||+||.+.++-+.+++|.+.|+.
T Consensus 84 NLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 84 NLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred eccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCe--e-----ec--cCChhhHH-----HHHHHHH---HHHHHhcCCCH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSI--I-----IK--NIDKDQLS-----AFDYYNE---LMLETLSNNDE 222 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~--~-----~~--~~~~~~~~-----~~~~~~~---~l~e~~~~~d~ 222 (1021)
.+.|++|||+.+..|.|++|+.+.....|.++.. . .. +.|+ ... ...++++ -+.++..++|
T Consensus 164 ~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~-~~~~l~~~~~~~~~ee~EL~~~a~~~Fd- 241 (528)
T COG4108 164 QCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPE-LDALLGEDLAEQLREELELVQGAGNEFD- 241 (528)
T ss_pred ceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChh-HHhhhchHHHHHHHHHHHHHHhhccccC-
Confidence 9999999999999999999999999998976531 0 01 1111 100 0111111 1111222222
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEE
Q psy5021 223 FFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLV 302 (1021)
Q Consensus 223 ~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V 302 (1021)
..+++.+...|||+|||++|.||+.+|+.++++.|+|..++... ..+...+..+.++|
T Consensus 242 --------------------~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~--~~v~p~e~kfsGFV 299 (528)
T COG4108 242 --------------------LEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADT--REVEPTEDKFSGFV 299 (528)
T ss_pred --------------------HHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCc--CcccCCCCccceEE
Confidence 23456788999999999999999999999999999998764311 11122445699999
Q ss_pred EEEe--ecCC-CceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeec
Q psy5021 303 FKIF--HDPF-LGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLC 379 (1021)
Q Consensus 303 ~k~~--~~~~-~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~ 379 (1021)
||++ .||. +.++||.||.||.+.+|+++...++++..+++.-..+++++++.+++|.||||+++.+-..++.|||++
T Consensus 300 FKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t 379 (528)
T COG4108 300 FKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFT 379 (528)
T ss_pred EEEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceee
Confidence 9998 4664 789999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred cCCccccccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcC
Q psy5021 380 SLSENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENN 459 (1021)
Q Consensus 380 ~~~~~~~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~ 459 (1021)
.. ....+++++...|-++..|..+++....+|.+||++|++|-. +++.....+++.+++..|.||+||+.+||+.||+
T Consensus 380 ~G-e~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ 457 (528)
T COG4108 380 EG-EKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYN 457 (528)
T ss_pred cC-ceeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcCe-eEEEecCCCCCceEEeeeeeehHHHHHHHHhhhC
Confidence 87 778889999999999999999999999999999999999986 6666677889999999999999999999999999
Q ss_pred eeeEEeCCeEEEE
Q psy5021 460 IKTKISKPQVSYK 472 (1021)
Q Consensus 460 v~v~~~~p~V~yr 472 (1021)
+++.+.+..++..
T Consensus 458 ve~~~e~~~~~~a 470 (528)
T COG4108 458 VEAVFEPVNFSTA 470 (528)
T ss_pred CeEEEeeccceEE
Confidence 9999987665544
|
|
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-65 Score=522.09 Aligned_cols=376 Identities=65% Similarity=1.054 Sum_probs=355.5
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
|..+.....+|..||++||||||.-++++.....+...+..+.-.|+.++|+.||+||+..++.|++.++.|.-+|+|||
T Consensus 48 f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH 127 (449)
T KOG0460|consen 48 FVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH 127 (449)
T ss_pred cccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch
Confidence 45566678999999999999999999998766666666666777899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+|++||+.++.+.|++||||.|++|+.+||+||+.++++.|+++++|.+||.|++++++.++-++-+++++|..+||++
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999878888989999999999999999
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCE
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEE 884 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~ 884 (1021)
++.|+|..||+..+++.++ +.+...+..|++++++++|.|.|..++||.++|.++|+++|.|||++|++++|.|++||+
T Consensus 208 d~~PvI~GSAL~ALeg~~p-eig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e 286 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQP-EIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDE 286 (449)
T ss_pred CCCCeeecchhhhhcCCCc-cccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCE
Confidence 9999999999998877433 345567999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCcc
Q psy5021 885 IEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTP 964 (1021)
Q Consensus 885 v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~ 964 (1021)
+.|...++.++..|.+|++++..+++|.|||++|+.|.+++.++++||+|+|.++.....+.|+|++++|+...|+.++|
T Consensus 287 ~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~k~ea~~YiLsk~EGGR~~p 366 (449)
T KOG0460|consen 287 VEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHNKFEAQLYILSKEEGGRHKP 366 (449)
T ss_pred EEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCcccccceeeEEEEEEEhhhCCCccc
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 965 FFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 965 i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+..+|+|.+|+.|..+++++.+....+.+.|||.+.+.+.+.+|+++++|+||.|||
T Consensus 367 f~s~y~~q~fs~TwD~~~~v~~~~~~~mvMPGe~~~~~~~Li~pm~le~GqrFtiRe 423 (449)
T KOG0460|consen 367 FVSGYRPQMFSRTWDVTGRVDIPPEKEMVMPGENVKVEVTLIRPMPLEKGQRFTLRE 423 (449)
T ss_pred hhhccchhheeeecccceEEEccChHhcccCCCCeEEEEEEecccccCCCceeeEcc
Confidence 999999999999999999999888789999999999999999999999999999997
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=502.82 Aligned_cols=369 Identities=73% Similarity=1.128 Sum_probs=348.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
....+|..||+|||||||..+|+.............+...|+.++|++||+||+..+..+++.++.+..+|+|||.+|++
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 34689999999999999999999876666666667777789999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
||+.++.++|++||||+|++|+.+||+||+.+++..|+|.++|++||+|++++++..+.++.++.++|..++|.+++.|+
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pi 170 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPI 170 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcce
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEee
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVG 889 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p 889 (1021)
+..||+...++... ....+.+|++++++++|.|.+..++||+++|.++|++.|.|+|++|+|++|.|++|+++.+..
T Consensus 171 i~gSal~ale~~~~---~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG 247 (394)
T COG0050 171 IRGSALKALEGDAK---WEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVG 247 (394)
T ss_pred eechhhhhhcCCcc---hHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEec
Confidence 99999987665433 224689999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCCC
Q psy5021 890 YKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGY 969 (1021)
Q Consensus 890 ~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~ 969 (1021)
.+...+..|.+++++++..+++.|||+|++.|.+++++++.||+||+.++++.+..+|+|++++|++..++.++|++.||
T Consensus 248 ~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~ph~kfeaevyvL~keeggrhtpff~~y 327 (394)
T COG0050 248 IKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEGGRHTPFFHGY 327 (394)
T ss_pred ccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCCcccccceeeEEEEEEecccCCCCCCcccCc
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 970 KPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 970 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+|.+|++++.+++.+++.+..+.+.|||++.+.+++.+||+++.|.||.+||
T Consensus 328 rpqfyfRttDVtg~i~l~eg~emvmpgdnv~~~veLi~pia~e~G~rFaIre 379 (394)
T COG0050 328 RPQFYFRTTDVTGAITLPEGVEMVMPGDNVKMVVELIHPIAMEEGLRFAIRE 379 (394)
T ss_pred cceeEEEeeeeeeeEeccCCcceecCCCceEEEEEEeeeeecCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999999996
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-60 Score=540.85 Aligned_cols=376 Identities=65% Similarity=1.065 Sum_probs=333.0
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
|...-..++++++||+|||||||+++|++.....+......+..+|+.++|+++|+|++.....|++++++++|+|||||
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh 134 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH 134 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc
Confidence 44555678899999999999999999986432222222223335899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+|+++|..++..+|+++||||+++|...|+++|+.++..+|+|++|+++||||++++++.++.+++++.++++.+++..
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~ 214 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPG 214 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999778899999998755566777778888888888877
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCE
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEE 884 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~ 884 (1021)
++++++|+||.++.++.+.. .++.++++|+++|.+.+|.|.+..++||||+|+++|+++|.|+|++|+|++|.|++||+
T Consensus 215 ~~vpiip~Sa~sa~~g~n~~-~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~ 293 (447)
T PLN03127 215 DEIPIIRGSALSALQGTNDE-IGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 293 (447)
T ss_pred CcceEEEeccceeecCCCcc-cccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCE
Confidence 78999999998776554332 23557899999999988888888899999999999999999999999999999999999
Q ss_pred EEEeecCC--eeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCC
Q psy5021 885 IEIVGYKQ--TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRH 962 (1021)
Q Consensus 885 v~i~p~~~--~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~ 962 (1021)
|.+.|.+. ..+++|+||+++++++++|.|||+|+++|++++..++++|+|||+++++..+++|+|++.+|+++.++..
T Consensus 294 v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~~~~~~~~F~A~i~vl~~~~gg~~ 373 (447)
T PLN03127 294 VEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGSIKTYKKFEAEIYVLTKDEGGRH 373 (447)
T ss_pred EEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCCCCceeEEEEEEEEEEcccccccC
Confidence 99987533 5679999999999999999999999999999999999999999998778889999999999998644445
Q ss_pred ccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 963 TPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 963 ~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+||..||++++|+++.+++|++.+.++++++.+||.+.|+|++++|+|++.++||+||+
T Consensus 374 ~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~gd~a~v~l~~~~p~~le~g~RfilR~ 432 (447)
T PLN03127 374 TPFFSNYRPQFYLRTADVTGKVELPEGVKMVMPGDNVTAVFELISPVPLEPGQRFALRE 432 (447)
T ss_pred cccccCceeEEEeeecceeEEEEeccCccccCCCCEEEEEEEECceEEEeeCCEEEEEe
Confidence 79999999999999999998888888899999999999999999999999999999996
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=536.55 Aligned_cols=375 Identities=73% Similarity=1.129 Sum_probs=334.9
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
|...-..++.+++||+|||||||+++|++.....+......++.+|++++|+++|+|++.....+++++..++|+|||||
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence 34455678999999999999999999997544444444444557899999999999999999999888899999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
++|++++..++..+|++++|+|+.+|+..|+++|+.++..+++|++||++||||+.++++.++.+.+++..+++.+++..
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~ 165 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999777789999998655667777788999999988876
Q ss_pred CceEEEEecccccccCCCCCccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGE 883 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd 883 (1021)
++++++++||++|.|... ...|+ ++++|+++|.+.+|.|.+..++||||+|+++|+++|.|+|++|+|++|.|++||
T Consensus 166 ~~~~ii~~Sa~~g~n~~~--~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd 243 (396)
T PRK12735 166 DDTPIIRGSALKALEGDD--DEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGD 243 (396)
T ss_pred CceeEEecchhccccCCC--CCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCC
Confidence 678999999999866432 23454 689999999998887888889999999999999999999999999999999999
Q ss_pred EEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCc
Q psy5021 884 EIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHT 963 (1021)
Q Consensus 884 ~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~ 963 (1021)
++.+.|.+.+.+++|+||+++++++++|.|||+|+++|++++.+++++|+|||+++++.++++|+|++.+|+++.++.++
T Consensus 244 ~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~~~~~~ 323 (396)
T PRK12735 244 EVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEGGRHT 323 (396)
T ss_pred EEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCCCCcceEEEEEEEEEecccCCCCC
Confidence 99999976566799999999999999999999999999999999999999999987777889999999999986433347
Q ss_pred cccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 964 PFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 964 ~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+|+.||++++|+++.+++|++.+.++++++.+|+.+.|+|++++|+|++.++||+||+
T Consensus 324 ~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~ 381 (396)
T PRK12735 324 PFFNGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNVKMTVELIAPIAMEEGLRFAIRE 381 (396)
T ss_pred cccCCCeeEEEeccceEEEEEEccCCCceeCCCCEEEEEEEECceEEEeECCEEEEEc
Confidence 8999999999999999998888788889999999999999999999999999999996
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-59 Score=534.01 Aligned_cols=371 Identities=69% Similarity=1.089 Sum_probs=332.8
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~ 726 (1021)
..-..++.+++||+|||||||+++|++.....+.+....++.+|++++|+++|+|++.....++.+++.++|||||||++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 34456889999999999999999999755444444444445689999999999999999999988889999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
|++++..++..+|++++|||+++|...|+++|+.++..+|+|++||++||||+++++++++.+.+++.++++.+++..++
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 167 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDD 167 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 99999999999999999999999999999999999999999988899999999865666777778999999999987677
Q ss_pred eEEEEecccccccCCCCCccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEE
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v 885 (1021)
++++++||++|.++.. .|+ ++++|+++|.+.+|.|.+..++||+|+|+++|+++|.|+|++|+|++|+|++||+|
T Consensus 168 ~~ii~vSa~~g~~~~~----~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v 243 (394)
T PRK12736 168 IPVIRGSALKALEGDP----KWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEV 243 (394)
T ss_pred ccEEEeeccccccCCC----cchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEE
Confidence 8999999998754432 333 68999999999888888888999999999999999999999999999999999999
Q ss_pred EEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccc
Q psy5021 886 EIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPF 965 (1021)
Q Consensus 886 ~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i 965 (1021)
.+.|.+.+.+++|+||++++.++++|.|||+|+++|++++.+++++|+|||+++++.++++|+|++.+++++.++.+++|
T Consensus 244 ~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~~~~~~~i 323 (394)
T PRK12736 244 EIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGSIKPHTKFKAEVYILTKEEGGRHTPF 323 (394)
T ss_pred EEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEecCCCCCcceEEEEEEEEEecccCCCCCcc
Confidence 99987556679999999999999999999999999999999999999999998777778999999999998644445799
Q ss_pred cCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 966 FNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 966 ~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+.||++++|+++.+++|++...++++++++|+.+.|+|++++|+|+++++||+||+
T Consensus 324 ~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~ 379 (394)
T PRK12736 324 FNNYRPQFYFRTTDVTGSIELPEGTEMVMPGDNVTITVELIHPIAMEQGLKFAIRE 379 (394)
T ss_pred cCCceEEEEEccCeEEEEEEecCCcceeCCCCEEEEEEEECceEEEeeCCEEEEec
Confidence 99999999999999998888888889999999999999999999999999999996
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-59 Score=532.67 Aligned_cols=375 Identities=71% Similarity=1.118 Sum_probs=334.0
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
|...-..++.+++||+|||||||+++|++.....+.+....++.+|++++|+++|+|++.....++++++.++|+|||||
T Consensus 6 ~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH 85 (396)
T ss_pred ccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH
Confidence 44555678999999999999999999997544444444444457899999999999999999999888899999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+|++++..++..+|++++|||+.+|...|+++|+.++..+++|.+||++||+|+++.++.++.+..++..+++.+++..
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999666789999998655567777788999999999876
Q ss_pred CceEEEEecccccccCCCCCccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGE 883 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd 883 (1021)
++++++|+||++|.+.. ....|+ ++++|+++|.+.++.|.+..++||+|+|+++|+++|.|+|++|+|.+|.+++||
T Consensus 166 ~~~~iv~iSa~~g~~~~--~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd 243 (396)
T PRK00049 166 DDTPIIRGSALKALEGD--DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGE 243 (396)
T ss_pred cCCcEEEeecccccCCC--CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCC
Confidence 77899999999875421 123444 679999999988887888889999999999999999999999999999999999
Q ss_pred EEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCc
Q psy5021 884 EIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHT 963 (1021)
Q Consensus 884 ~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~ 963 (1021)
++.+.|.+.+..++|+||++++.++++|.+||+|+++|++++.+++++|+|||+++++.++++|+|++.+|+++.++..+
T Consensus 244 ~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~~g~~~ 323 (396)
T PRK00049 244 EVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGSITPHTKFEAEVYVLSKEEGGRHT 323 (396)
T ss_pred EEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCCCCCcceEEEEEEEEEecCcCCCCC
Confidence 99999875466799999999999999999999999999999999999999999987777789999999999985433457
Q ss_pred cccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 964 PFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 964 ~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+|+.||++++|+++++++|++++.++++++++|+.+.|+|++.+|+|+++++||+|||
T Consensus 324 ~i~~g~~~~~~~~t~~~~~~i~l~~~~~~l~~g~~a~v~i~~~~p~~~e~~~RfilR~ 381 (396)
T PRK00049 324 PFFNGYRPQFYFRTTDVTGVIELPEGVEMVMPGDNVEMTVELIAPIAMEEGLRFAIRE 381 (396)
T ss_pred cccCCCEEEEEEecCcEEEEEEecCCCcccCCCCEEEEEEEECceEEEeeCCEEEEec
Confidence 9999999999999999999888878899999999999999999999999999999996
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-59 Score=531.47 Aligned_cols=371 Identities=73% Similarity=1.124 Sum_probs=331.6
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~ 726 (1021)
..-+.++.+++||+|||||||+++|++.....+......++.+|+.++|+++|+|++.....++.+++.++|||||||++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 34456889999999999999999998654444444444456789999999999999999999988889999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
|.+++..++..+|++++|+|+++|+..|+++|+.++..+++|++|+++||||+.+++++++.+++++.++++.+++...+
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~ 167 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDD 167 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999999999999999999999999977789999999875566777778899999999887667
Q ss_pred eEEEEecccccccCCCCCccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEE
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v 885 (1021)
++++++||++|.++.+ .|+ ++.+|+++|.+.+|.|.+..++||+|+|+++|+++|.|+|++|+|.+|.|++||+|
T Consensus 168 ~~ii~vSa~~g~~g~~----~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v 243 (394)
T TIGR00485 168 TPIIRGSALKALEGDA----EWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEV 243 (394)
T ss_pred ccEEECccccccccCC----chhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEE
Confidence 8999999998865432 343 57899999998777788888999999999999999999999999999999999999
Q ss_pred EEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccc
Q psy5021 886 EIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPF 965 (1021)
Q Consensus 886 ~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i 965 (1021)
.+.|.+++.+++|++|++++.+++.|.|||+|+++|++++..++++|+|||+++++.++++|+|++.+|+++.|+.+++|
T Consensus 244 ~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~g~~~~~i 323 (394)
T TIGR00485 244 EIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPGSIKPHTKFEAEVYVLKKEEGGRHTPF 323 (394)
T ss_pred EEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCCCCCcceEEEEEEEEEecCCCCCCCcc
Confidence 99986545678999999999999999999999999999999999999999998777778999999999998644445799
Q ss_pred cCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 966 FNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 966 ~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+.||++++|+++.+++|++...+++++|.+|+.+.|+|++++|+|+++++||+||+
T Consensus 324 ~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~~~~~~p~~~~~~~rfilR~ 379 (394)
T TIGR00485 324 FSGYRPQFYFRTTDVTGSITLPEGVEMVMPGDNVKMTVELISPIALEQGMRFAIRE 379 (394)
T ss_pred ccCceEEEEEecceEEEEEEecCCcceeCCCCEEEEEEEECceEEEeECCEEEEec
Confidence 99999999999999998888778899999999999999999999999999999996
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-59 Score=533.94 Aligned_cols=374 Identities=62% Similarity=0.996 Sum_probs=333.0
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
.-..++.+++||+|||||||+++|+.....+.......+..+|..++|+++|+|++.....++++++.++|||||||++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 34467899999999999999999997665555444444456899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
+++|..++..+|++++||||.+|...||++|+.++..+|+|++||++||||++++++.++.+++++..+++.++|...++
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 237 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDI 237 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcc
Confidence 99999999999999999999999999999999999999999899999999998766677888889999999999987789
Q ss_pred EEEEecccccccCCC------CCccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEee
Q psy5021 808 KIVIGSALLALEGKD------DNQLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVK 880 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~------~~~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~ 880 (1021)
+++|+||.+|.|... .....|+ ++++|+++|.+..+.|.+..++||||+|+++|+++|.|+|++|+|++|.|+
T Consensus 238 ~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~ 317 (478)
T PLN03126 238 PIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVK 317 (478)
T ss_pred eEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCeEe
Confidence 999999998854321 0112454 478899999987666778889999999999999999999999999999999
Q ss_pred CCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCC
Q psy5021 881 NGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGG 960 (1021)
Q Consensus 881 ~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~ 960 (1021)
+||+|.+.|.+++..++|++|+.++.+++.|.|||+|+++|++++..++++|+|||+++++.++++|+|++.+++++.++
T Consensus 318 ~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~~~~~~~F~A~i~vL~~~~gg 397 (478)
T PLN03126 318 VGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIVYVLKKEEGG 397 (478)
T ss_pred cCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecCCCCCceEEEEEEEEEecccccC
Confidence 99999999987777899999999999999999999999999999999999999999987777899999999999986444
Q ss_pred CCccccCCCEEEEEEeeceeeeeeccC-----CCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 961 RHTPFFNGYKPQFYFRTTDVTGICKLP-----ENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 961 ~~~~i~~G~~~~~~~~~~~~~~~~~~~-----~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
.++||+.||++++|+++.+++|++... +.++++++||.+.|+|++.+|+|+++++||+||+
T Consensus 398 ~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~~~~~~l~~gd~a~v~l~~~~Pi~~~~~~RfilR~ 463 (478)
T PLN03126 398 RHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIRE 463 (478)
T ss_pred CcccccCCcEEEEEEEecEEEEEEEEEecccCCCccEeCCCCEEEEEEEECCeEEEccCCEEEEec
Confidence 457999999999999999999877543 2568899999999999999999999999999996
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-58 Score=529.15 Aligned_cols=364 Identities=30% Similarity=0.445 Sum_probs=323.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc---------------cccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG---------------GEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~---------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..++.+++||++||||||+++|+.....+.. ..+...+++|..++|+++|+|++.....++++++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 4578999999999999999999865432221 2223346789999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc---hhh
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQ---DKE 784 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~ 784 (1021)
.++|+|||||++|.++|+.+++.+|++|+||||++|.+ .||++|+.++..+|+|++||++||||+.+ .+.
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~ 165 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKA 165 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHH
Confidence 99999999999999999999999999999999999854 69999999999999998999999999872 356
Q ss_pred HHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEee
Q psy5021 785 LLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSI 863 (1021)
Q Consensus 785 ~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v 863 (1021)
+++++.++++.+++..||+.++++|+|+||++|.|.... ....|+..++|+++|.+ ++.|.+..+.||||+|+++|++
T Consensus 166 ~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~~~~~plr~~I~~v~~~ 244 (447)
T PLN00043 166 RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPSDKPLRLPLQDVYKI 244 (447)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCccccCCCcEEEEEEEEEe
Confidence 789999999999999999877899999999998765433 24688889999999987 6667788899999999999999
Q ss_pred CCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC--Cc
Q psy5021 864 SGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG--SI 941 (1021)
Q Consensus 864 ~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~--~~ 941 (1021)
+|.|+|++|+|++|.|++||+|.+.|.+. .++|+||++++.++++|.|||+|+++|++++..++++|+|||++. ++
T Consensus 245 ~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~--~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~~~p~ 322 (447)
T PLN00043 245 GGIGTVPVGRVETGVIKPGMVVTFGPTGL--TTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPA 322 (447)
T ss_pred CCcEEEEEEEEECCEEeeCCEEEEcCCCC--EEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCCCCCC
Confidence 99999999999999999999999999764 589999999999999999999999999999999999999999863 45
Q ss_pred cceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeec-c------------CCCcccccCCCeEEEEEEEcee
Q psy5021 942 KSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICK-L------------PENVEMVLPGDNIKLNVTLLSS 1008 (1021)
Q Consensus 942 ~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~-~------------~~~~~~l~~g~~~~v~~~~~~p 1008 (1021)
..+++|+|+|.|++++ .+|..||++++|+++.+++|+++ + .++|++|++||.|.|+|++.+|
T Consensus 323 ~~~~~F~A~i~~l~~~-----~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~p 397 (447)
T PLN00043 323 KEAANFTSQVIIMNHP-----GQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKP 397 (447)
T ss_pred ccccEEEEEEEEECCC-----CCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCc
Confidence 7899999999999987 58999999999999999998652 1 2357899999999999999999
Q ss_pred eecccC------CeEEEeC
Q psy5021 1009 IAIEIG------LRFAIRE 1021 (1021)
Q Consensus 1009 i~~~~~------~rf~lr~ 1021 (1021)
+|++++ +||+|||
T Consensus 398 i~~e~~~~~~~lGrf~lrd 416 (447)
T PLN00043 398 MVVETFSEYPPLGRFAVRD 416 (447)
T ss_pred EEEEecccCCCCceEEEEE
Confidence 999984 8999996
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=522.64 Aligned_cols=375 Identities=67% Similarity=1.046 Sum_probs=331.9
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~ 726 (1021)
.+-..++.+++||+|||||||+|+|++....+.......+..+|+.++|+++|+|++.....|+++++.++|+|||||.+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 34456889999999999999999999865554444444445689999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
|++++..++..+|++++||||.+|...|+++|+.++..+|+|++|+++||||++++++.++.+++++..+++.++++.+.
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 167 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDD 167 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999988899999999876667788888999999999987777
Q ss_pred eEEEEecccccccCCCCC------ccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEe
Q psy5021 807 TKIVIGSALLALEGKDDN------QLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIV 879 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~------~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l 879 (1021)
++++|+||.+|.|..... ...|+ ++++|+++|.+.+|.|.+..+.||+|+|+++|+++|.|+|++|+|.+|.+
T Consensus 168 ~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l 247 (409)
T CHL00071 168 IPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTV 247 (409)
T ss_pred ceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEE
Confidence 999999999986543211 12455 47999999998887787888999999999999999999999999999999
Q ss_pred eCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCC
Q psy5021 880 KNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEG 959 (1021)
Q Consensus 880 ~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~ 959 (1021)
++||+|.+.|.++...++|+||+++++++++|.|||+|+++|++++.+++++||||++++++.++++|+|++.+++++.+
T Consensus 248 ~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~ 327 (409)
T CHL00071 248 KVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGTITPHTKFEAQVYILTKEEG 327 (409)
T ss_pred eeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCCCCCcceEEEEEEEEEecccC
Confidence 99999999876555668999999999999999999999999999999999999999998777789999999999998533
Q ss_pred CCCccccCCCEEEEEEeeceeeeeeccCC-----CcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 960 GRHTPFFNGYKPQFYFRTTDVTGICKLPE-----NVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 960 ~~~~~i~~G~~~~~~~~~~~~~~~~~~~~-----~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+..+||..||++++|+++.+++|+++... .++++++|+.+.|+|++++|+|+++++||+||+
T Consensus 328 ~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~~~~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR~ 394 (409)
T CHL00071 328 GRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIRE 394 (409)
T ss_pred CccccccCCceEEEEEcccEEEEEEEEEcccCCCCCcEecCCCEEEEEEEECCeEEEeeCCEEEEec
Confidence 23468999999999999999998776432 478999999999999999999999999999996
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-58 Score=525.56 Aligned_cols=366 Identities=31% Similarity=0.484 Sum_probs=324.7
Q ss_pred ccccceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeC
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESE 712 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~ 712 (1021)
+-..++.+.+||+++|||||+++|+.....+. .+.++..+.+|..++|+++|+|++.....++++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 34567899999999999999999986443322 233444467899999999999999999999999
Q ss_pred CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeecc--ccc-h
Q psy5021 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKAD--CVQ-D 782 (1021)
Q Consensus 713 ~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~D--l~~-~ 782 (1021)
++.++|+|||||++|.++|+.++..+|+++|||||++|.+ .||++||.++..+|+|++||++|||| .++ +
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~ 163 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYS 163 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhh
Confidence 9999999999999999999999999999999999999984 79999999999999999999999999 443 4
Q ss_pred hhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEE
Q psy5021 783 KELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVF 861 (1021)
Q Consensus 783 ~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~ 861 (1021)
+++++++.+++..+++.+++..++++++|+||++|.|.... ....||..++|+++|.+ ++.|.+..++|+||+|+++|
T Consensus 164 ~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~-~~~~~~~~~~p~r~~I~~v~ 242 (446)
T PTZ00141 164 QERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT-LEPPKRPVDKPLRLPLQDVY 242 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC-CCCCCcCCCCCeEEEEEEEE
Confidence 57899999999999999999877899999999998665432 24678889999999987 45577778899999999999
Q ss_pred eeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC--
Q psy5021 862 SISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG-- 939 (1021)
Q Consensus 862 ~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~-- 939 (1021)
+++|.|+|++|+|++|.|++||+|.+.|.+. .++|+||++++.++++|.|||+|+++|++++..++++|+|||++.
T Consensus 243 ~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~~~ 320 (446)
T PTZ00141 243 KIGGIGTVPVGRVETGILKPGMVVTFAPSGV--TTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSKND 320 (446)
T ss_pred ecCCceEEEEEEEEcceEecCCEEEEccCCc--EEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCCCC
Confidence 9999999999999999999999999999754 589999999999999999999999999999999999999999874
Q ss_pred CccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-------------CCcccccCCCeEEEEEEEc
Q psy5021 940 SIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-------------ENVEMVLPGDNIKLNVTLL 1006 (1021)
Q Consensus 940 ~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~g~~~~v~~~~~ 1006 (1021)
++..+++|+|+|.||+++ ++|+.||++++|+++.+++|+++-. .++++|.+|+.+.|+|+++
T Consensus 321 p~~~~~~f~a~i~~l~~~-----~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~ 395 (446)
T PTZ00141 321 PAKECADFTAQVIVLNHP-----GQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPT 395 (446)
T ss_pred CCccceEEEEEEEEECCC-----CccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEEC
Confidence 456799999999999986 5899999999999999999876422 3578999999999999999
Q ss_pred eeeecccC------CeEEEeC
Q psy5021 1007 SSIAIEIG------LRFAIRE 1021 (1021)
Q Consensus 1007 ~pi~~~~~------~rf~lr~ 1021 (1021)
+|+|+++| +||+||+
T Consensus 396 ~pi~~e~~~~~~~lgrfilrd 416 (446)
T PTZ00141 396 KPMCVEVFNEYPPLGRFAVRD 416 (446)
T ss_pred CceEEeecccCCCCccEEEEE
Confidence 99999964 8999996
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=511.87 Aligned_cols=365 Identities=34% Similarity=0.545 Sum_probs=324.0
Q ss_pred cccceeeeeeeeeccchhhhhhhcccccccccc---------------ccccccccCCchhhhhcCceEeeeEEEEeeCC
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGG---------------EVRAFDTIDNAPEEKERGITISTSHVEYESEN 713 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~---------------~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~ 713 (1021)
-..++.+++||+|||||||+++|+.....+... .+...+++|+.++|+++|+|++.....+++++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 346789999999999999999999765554322 23345678999999999999999999999999
Q ss_pred eEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCC--CCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHHH
Q psy5021 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVD--GPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVE 790 (1021)
Q Consensus 714 ~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~--g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~~ 790 (1021)
..++|||||||++|.+++..+++.+|++|+|+|+++ +...|+++|+.++..++++++||++||+|+.+ ++++++.+.
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 88999999999999999877999999999986 345677778
Q ss_pred HHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeE
Q psy5021 791 MEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTV 869 (1021)
Q Consensus 791 ~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~V 869 (1021)
+++.++++.+++....++++++||++|.+..... ..+||..++|+++|.. ++.|.+..++||+|+|+++|+++|.|+|
T Consensus 164 ~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~-~~~~~~~~~~p~r~~i~~~~~~~g~G~v 242 (425)
T PRK12317 164 EEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN-LKPPEKPTDKPLRIPIQDVYSISGVGTV 242 (425)
T ss_pred HHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc-CCCCccccCCCcEEEEEEEEeeCCCeEE
Confidence 8899998888886666899999999986554332 4679989999999986 6777778899999999999999999999
Q ss_pred EEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC-CccceeeEE
Q psy5021 870 VTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG-SIKSYNIFE 948 (1021)
Q Consensus 870 v~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~-~~~~~~~f~ 948 (1021)
++|+|++|+|++||+|.+.|.+. .++|+||+.++.++++|.|||+|+++|++++..++++|+||++++ ++..+++|+
T Consensus 243 v~G~v~~G~v~~Gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~~~~~~f~ 320 (425)
T PRK12317 243 PVGRVETGVLKVGDKVVFMPAGV--VGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDNPPTVAEEFT 320 (425)
T ss_pred EEEEEeeccEecCCEEEECCCCC--eEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCCCCCcccEEE
Confidence 99999999999999999999765 489999999999999999999999999999999999999999876 467899999
Q ss_pred EEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc-------------CCCcccccCCCeEEEEEEEceeeecccC-
Q psy5021 949 CEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-------------PENVEMVLPGDNIKLNVTLLSSIAIEIG- 1014 (1021)
Q Consensus 949 a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~g~~~~v~~~~~~pi~~~~~- 1014 (1021)
|++.|++++ ++|+.||++++|+++.+++|+++- .+++++|++|+.|.|+|++++|+|+++|
T Consensus 321 a~v~~l~~~-----~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~~~~~ 395 (425)
T PRK12317 321 AQIVVLQHP-----SAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVK 395 (425)
T ss_pred EEEEEECCC-----CcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeEEEeCC
Confidence 999999986 589999999999999999987742 2357899999999999999999999998
Q ss_pred -----CeEEEeC
Q psy5021 1015 -----LRFAIRE 1021 (1021)
Q Consensus 1015 -----~rf~lr~ 1021 (1021)
+||+||+
T Consensus 396 ~~~~lgrfilr~ 407 (425)
T PRK12317 396 EIPQLGRFAIRD 407 (425)
T ss_pred cCCCCccEEEEE
Confidence 8999996
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-55 Score=504.99 Aligned_cols=366 Identities=33% Similarity=0.524 Sum_probs=321.7
Q ss_pred ccccceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeC
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESE 712 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~ 712 (1021)
+-..++.+++||+|||||||+++|+.....+. .+.+...+.+|+.++|+++|+|++.....++++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 34567899999999999999999986443322 122334467899999999999999999999999
Q ss_pred CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC---CcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHH
Q psy5021 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG---PMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDL 788 (1021)
Q Consensus 713 ~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g---~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~ 788 (1021)
+..++|||||||++|.+++..+++.+|++++|||++++ ...|+.+|+.++..++++++||++||+|+.+ ++++++.
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 99999999999999999999999999999999999998 6678999999988889887999999999985 3556777
Q ss_pred HHHHHHHhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCce
Q psy5021 789 VEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRG 867 (1021)
Q Consensus 789 ~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G 867 (1021)
+.+++.++++.+++....++++++||++|.+.... ....|+..++|+++|.+ ++.|.+..++||+|+|+++|+++|.|
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~g~G 242 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEKPTDKPLRIPIQDVYSITGVG 242 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCCccCCCcEEEEEEEEecCCCe
Confidence 88899999998888766789999999998655433 23578888999999976 56677778899999999999999999
Q ss_pred eEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC-Cccceee
Q psy5021 868 TVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG-SIKSYNI 946 (1021)
Q Consensus 868 ~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~-~~~~~~~ 946 (1021)
+|++|+|++|.|++||+|.+.|.+. .++|+||++++.++++|.|||+|+++|++++..++++|+||++++ +++.+++
T Consensus 243 ~vv~G~v~~G~i~~gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~~~~~~~ 320 (426)
T TIGR00483 243 TVPVGRVETGVLKPGDKVVFEPAGV--SGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNPPKVAKE 320 (426)
T ss_pred EEEEEEEccceeecCCEEEECCCCc--EEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCCCceeeE
Confidence 9999999999999999999999764 589999999999999999999999999999999999999999876 4678999
Q ss_pred EEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc-------------CCCcccccCCCeEEEEEEEceeeeccc
Q psy5021 947 FECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-------------PENVEMVLPGDNIKLNVTLLSSIAIEI 1013 (1021)
Q Consensus 947 f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~g~~~~v~~~~~~pi~~~~ 1013 (1021)
|+|++.|++++ +||+.||++++|+++.+++|+++- .+++++|++|+.|.|+|++++|+|++.
T Consensus 321 f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~ 395 (426)
T TIGR00483 321 FTAQIVVLQHP-----GAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIEA 395 (426)
T ss_pred EEEEEEEECCC-----CccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEee
Confidence 99999999987 599999999999999999987632 235789999999999999999999998
Q ss_pred ------CCeEEEeC
Q psy5021 1014 ------GLRFAIRE 1021 (1021)
Q Consensus 1014 ------~~rf~lr~ 1021 (1021)
.+||+||+
T Consensus 396 ~~~~~~~grf~lr~ 409 (426)
T TIGR00483 396 VKEIPPLGRFAIRD 409 (426)
T ss_pred cccCCCCccEEEEE
Confidence 58999996
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=469.48 Aligned_cols=364 Identities=26% Similarity=0.392 Sum_probs=326.8
Q ss_pred ccceeeeeeeeeccchhhhhhhcccccc---------------ccccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSE---------------IYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~---------------~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..++..+.||+++|||||+++|+..... .+.+.+.+.|.+|.+++||+||+|.+.+...|+...+
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 3467789999999999999999754332 2345566778899999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQ-DKELL 786 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~ 786 (1021)
.++|+|+|||.+|+++|+.++.+||+++|||||+.|.+ +||+||+.+++.+|+.++||++||||+++ +++|+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF 335 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRF 335 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHH
Confidence 99999999999999999999999999999999998865 89999999999999999999999999998 57899
Q ss_pred HHHHHHHHHhh-hccccCCCceEEEEecccccccCCCC----CccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEE
Q psy5021 787 DLVEMEIRELL-TEYDFDGENTKIVIGSALLALEGKDD----NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVF 861 (1021)
Q Consensus 787 ~~~~~~~~~~l-~~~~~~~~~~~ii~iSa~~~~~~~~~----~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~ 861 (1021)
+++++.+..|| +..||...++.|+|||+++|.|.... ....||..++||+.|++ +..|.++.++||++.|.+++
T Consensus 336 ~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~ltIsdi~ 414 (603)
T KOG0458|consen 336 EEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLTISDIY 414 (603)
T ss_pred HHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeEEEhhhee
Confidence 99999999999 88999988999999999999765433 24679999999999998 77788889999999999999
Q ss_pred eeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEee-CC-
Q psy5021 862 SISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAK-IG- 939 (1021)
Q Consensus 862 ~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~-~~- 939 (1021)
..++.|..++|+|++|.|++||+|+++|+... +.|++|.+++.+...|.|||+|.+.|.++.++.++.|+++|. +.
T Consensus 415 ~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~--~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~~~~~ 492 (603)
T KOG0458|consen 415 PLPSSGVSISGKIESGYIQPGQKLYIMTSRED--ATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIADSGPQF 492 (603)
T ss_pred ecCCCeeEEEEEEeccccccCCEEEEecCcce--EEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeeecCCCc
Confidence 99999999999999999999999999987654 889999999999999999999999999999999999999994 44
Q ss_pred CccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeee-cc------------CCCcccccCCCeEEEEEEEc
Q psy5021 940 SIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGIC-KL------------PENVEMVLPGDNIKLNVTLL 1006 (1021)
Q Consensus 940 ~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~-~~------------~~~~~~l~~g~~~~v~~~~~ 1006 (1021)
+...+.+|.+++.+|+.. .||..|.+..+|+|+..++|.+ ++ ++.++++..|+.|+|+++.+
T Consensus 493 ~i~~~~~f~~~~~~f~~~-----~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vele~~ 567 (603)
T KOG0458|consen 493 PISKTTRFVARITTFDIN-----LPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVELETE 567 (603)
T ss_pred cccceeEEEEEEEEeecc-----ccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeecccc
Confidence 356779999999999976 6999999999999998887643 22 34679999999999999999
Q ss_pred eeeecccC------CeEEEeC
Q psy5021 1007 SSIAIEIG------LRFAIRE 1021 (1021)
Q Consensus 1007 ~pi~~~~~------~rf~lr~ 1021 (1021)
+|||++.| +||+||.
T Consensus 568 ~pI~~etf~~~~~lgr~vlr~ 588 (603)
T KOG0458|consen 568 RPICLETFAENRALGRVVLRK 588 (603)
T ss_pred CchhhhhhhhchhheeEEEec
Confidence 99999977 8999993
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=427.68 Aligned_cols=350 Identities=29% Similarity=0.454 Sum_probs=304.2
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe-------------------
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE------------------- 710 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~------------------- 710 (1021)
..+++|.+||+|||||||+++|+....+.+++..+ .++|.++||.++|.|.+++...+-
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR--~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATR--SYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchh--hhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 35799999999999999999999866666555544 568999999999999988876542
Q ss_pred ----eCCeEEEEEecCChhhhHHHHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhh
Q psy5021 711 ----SENKHYAHVDCPGHADYIKNMITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKE 784 (1021)
Q Consensus 711 ----~~~~~i~liDtpG~~~~~~~~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~ 784 (1021)
..++.+.|+||-||+.|++++++++ .+.|+.+|+|.|++|++..|+||+.++..+++| +|||+||+|+.+ ++
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lP-viVvvTK~D~~~-dd 271 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELP-VIVVVTKIDMVP-DD 271 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCC-EEEEEEecccCc-HH
Confidence 2347889999999999999999998 578999999999999999999999999999999 999999999997 67
Q ss_pred HHHHHHHHHHHhhhccccCC--------------------CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 785 LLDLVEMEIRELLTEYDFDG--------------------ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 785 ~~~~~~~~~~~~l~~~~~~~--------------------~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
+++.+.+++..+|+..+--+ .-+|++.+|+.+|. +++-|.+.+ ..+|.
T Consensus 272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~-----------GldlL~e~f-~~Lp~ 339 (527)
T COG5258 272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE-----------GLDLLDEFF-LLLPK 339 (527)
T ss_pred HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc-----------cHHHHHHHH-HhCCc
Confidence 78888888888887643111 12689999999883 555444444 44765
Q ss_pred CCC-CCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec--CCeeEEEEEEEEecccccceeccCceEEEEe
Q psy5021 845 PNR-ITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY--KQTIKTTITGIEMFKKTLDEGLAGENVGILL 921 (1021)
Q Consensus 845 ~~~-~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~--~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l 921 (1021)
..+ ....||+|+|+++|++.|+|+|++|.|.+|.++.||+++++|+ +++..++||||++|+-.++.|.||..+++++
T Consensus 340 rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al 419 (527)
T COG5258 340 RRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIAL 419 (527)
T ss_pred ccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEe
Confidence 434 3457999999999999999999999999999999999999986 4688999999999999999999999999999
Q ss_pred cccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEE
Q psy5021 922 RSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKL 1001 (1021)
Q Consensus 922 ~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v 1001 (1021)
+++.++.+++|||++...+|++.++|+|++.+|.|| +.|..||.|++|+.|++.++..+=.+ ...+.+||...|
T Consensus 420 ~gv~~e~lerGMVl~~~~~pkaVref~AeV~vl~HP-----T~I~aGye~v~H~etI~e~~~f~~id-~~~L~~GD~g~v 493 (527)
T COG5258 420 KGVEKEELERGMVLSAGADPKAVREFDAEVLVLRHP-----TTIRAGYEPVFHYETIREAVYFEEID-KGFLMPGDRGVV 493 (527)
T ss_pred cccCHHHHhcceEecCCCCchhhheecceEEEEeCC-----cEEecCceeeeEeeEeeheeEEEEcc-cccccCCCcceE
Confidence 999999999999999887799999999999999998 79999999999999999986554333 478999999999
Q ss_pred EEEEc-eeeecccCCeEEEeC
Q psy5021 1002 NVTLL-SSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 1002 ~~~~~-~pi~~~~~~rf~lr~ 1021 (1021)
.++|. ||-.++.||+|+|||
T Consensus 494 r~~fkyrP~~v~eGQ~fvFRe 514 (527)
T COG5258 494 RMRFKYRPHHVEEGQKFVFRE 514 (527)
T ss_pred EEEEEeCchhhccCcEEEEec
Confidence 99977 999999999999997
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-51 Score=467.15 Aligned_cols=355 Identities=25% Similarity=0.362 Sum_probs=307.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccc-----------------cccccccccCCchhhhhcCceEeeeEEEEeeCCeE
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYG-----------------GEVRAFDTIDNAPEEKERGITISTSHVEYESENKH 715 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~-----------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~ 715 (1021)
...++||+|||||||+++|+.....+.. +++...|++|+.++|++||+|++.....++++++.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 3568899999999999999865544332 13445568999999999999999999999999999
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHHHHHHH
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIR 794 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~~~~~~ 794 (1021)
++|||||||++|.++|..++..+|++|+||||.+|...||++|+.++..++++++||++||||+++ ++++++.+++++.
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~ 161 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYL 161 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988999999999985 3456777788888
Q ss_pred HhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEE
Q psy5021 795 ELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGK 873 (1021)
Q Consensus 795 ~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~ 873 (1021)
.+++.+++. +++++|+||++|.+.... ....||..++|+++|.. ++.|.+..++|+||+|+++|+....+.-++|+
T Consensus 162 ~~~~~~~~~--~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~ 238 (406)
T TIGR02034 162 AFAEQLGFR--DVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERDAQDLPLRFPVQYVNRPNLDFRGYAGT 238 (406)
T ss_pred HHHHHcCCC--CccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCCcCCCCcccceEEEeecCCCcEEEEEE
Confidence 888877764 578999999998655433 24678889999999987 56677778899999999998754433337899
Q ss_pred EEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-ccceeeEEEEEE
Q psy5021 874 IERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIFECEVY 952 (1021)
Q Consensus 874 V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~ 952 (1021)
|++|.|++||+|.+.|.+ ..++|+||++++.++++|.|||+|+++|++ ..++++|+|||+++. +..+++|+|++.
T Consensus 239 v~~G~l~~gd~v~i~P~~--~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~~~~~f~a~i~ 314 (406)
T TIGR02034 239 IASGSVHVGDEVVVLPSG--RSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPEVADQFAATLV 314 (406)
T ss_pred EecceeecCCEEEEeCCC--cEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCCcceEEEEEEE
Confidence 999999999999999975 458999999999999999999999999985 678999999999875 678999999999
Q ss_pred EeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-----------CCcccccCCCeEEEEEEEceeeecccC------C
Q psy5021 953 ILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-----------ENVEMVLPGDNIKLNVTLLSSIAIEIG------L 1015 (1021)
Q Consensus 953 ~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~g~~~~v~~~~~~pi~~~~~------~ 1015 (1021)
++++ .+|+.||++++|+|+.+++|++... .+++.+.+|+.+.|+|++++|+|++.+ +
T Consensus 315 ~l~~------~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~~~~~l~~~~~~~v~l~~~~p~~~~~~~~~~~lG 388 (406)
T TIGR02034 315 WMAE------EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKGAAKSLELNEIGRVNLSLDEPIAFDPYAENRTTG 388 (406)
T ss_pred EeCh------hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcccCCcccCCCCEEEEEEEECCeeccCcccCCCcce
Confidence 9985 3899999999999999999887532 235889999999999999999999988 4
Q ss_pred eEEEe
Q psy5021 1016 RFAIR 1020 (1021)
Q Consensus 1016 rf~lr 1020 (1021)
||+||
T Consensus 389 r~~l~ 393 (406)
T TIGR02034 389 AFILI 393 (406)
T ss_pred eEEEE
Confidence 99994
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=472.12 Aligned_cols=360 Identities=23% Similarity=0.335 Sum_probs=308.3
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccc-----------------cccccccccCCchhhhhcCceEeeeEEEEee
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-----------------GEVRAFDTIDNAPEEKERGITISTSHVEYES 711 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-----------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~ 711 (1021)
...+...++||+|+|||||+++|+.....+.. +.+...+++|+.++|++||+|++.....+++
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34578899999999999999999876544432 1233456899999999999999999999999
Q ss_pred CCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHHH
Q psy5021 712 ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVE 790 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~~ 790 (1021)
++..++|||||||++|.+++..++..+|++++||||++|+..||++|+.++..++++++||++||||+++ ++++++.++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~ 184 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIR 184 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888999999999985 345677777
Q ss_pred HHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeE
Q psy5021 791 MEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTV 869 (1021)
Q Consensus 791 ~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~V 869 (1021)
+++..+++.+++. ...+++|+||++|.+..... ...|+.+++|+++|.. ++.|.+..+.|+||+|+++++.......
T Consensus 185 ~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~-i~~~~~~~~~p~r~~I~~v~~~~~~~~g 262 (474)
T PRK05124 185 EDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLET-VDIQRVVDAQPFRFPVQYVNRPNLDFRG 262 (474)
T ss_pred HHHHHHHHhcCCC-CCceEEEEEeecCCCcccccccccccchhhHHHHHhh-cCCCCCCCCCCceeeEEEEEecCCcccc
Confidence 8888887777642 35789999999987654332 4678888999998875 6667777889999999999875432222
Q ss_pred EEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-ccceeeEE
Q psy5021 870 VTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIFE 948 (1021)
Q Consensus 870 v~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~ 948 (1021)
+.|+|.+|.|++||+|.+.|.+. .++|+||++++.+++.|.|||+|+++|++ ..++++|+|||+++. +..+++|+
T Consensus 263 ~~G~V~sG~l~~Gd~v~i~P~~~--~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~~~~~~~~~~f~ 338 (474)
T PRK05124 263 YAGTLASGVVKVGDRVKVLPSGK--ESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAADEALQAVQHAS 338 (474)
T ss_pred eEEEEEeEEEecCCEEEEecCCc--eEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECCCCCCccceEEE
Confidence 67999999999999999999764 58999999999999999999999999985 678999999998864 67899999
Q ss_pred EEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-----------CCcccccCCCeEEEEEEEceeeecccC---
Q psy5021 949 CEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-----------ENVEMVLPGDNIKLNVTLLSSIAIEIG--- 1014 (1021)
Q Consensus 949 a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~g~~~~v~~~~~~pi~~~~~--- 1014 (1021)
|++.|++ + .+|+.||++++|+++.+++|++... .++++|++|+.|.|+|++.+|+|++++
T Consensus 339 a~i~~l~-~-----~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~~~~~l~~g~~a~v~l~~~~pv~~e~~~~~ 412 (474)
T PRK05124 339 ADVVWMA-E-----QPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQREAENLPLNGIGLVELTFDEPLVLDPYQQN 412 (474)
T ss_pred EEEEEeC-C-----cccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcccCccccCCCCEEEEEEEECCeeccccCCcC
Confidence 9999998 3 4899999999999999999877432 136799999999999999999999998
Q ss_pred ---CeEEEe
Q psy5021 1015 ---LRFAIR 1020 (1021)
Q Consensus 1015 ---~rf~lr 1020 (1021)
+||+||
T Consensus 413 ~~lGRfil~ 421 (474)
T PRK05124 413 RVTGGFIFI 421 (474)
T ss_pred CcceeEEEE
Confidence 579995
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=463.03 Aligned_cols=337 Identities=29% Similarity=0.412 Sum_probs=288.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe---------------eC--
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE---------------SE-- 712 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~---------------~~-- 712 (1021)
..+++|.+||+|||||||+++|++.. +|++++|.+||+|++.++..+. .+
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~-------------~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~ 99 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVK-------------TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSS 99 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCC-------------cccchhhHHhCCchhccccccccccCcccCCcccccccCCC
Confidence 45789999999999999999999743 5899999999999999876541 11
Q ss_pred ----------------CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCeEEEEEe
Q psy5021 713 ----------------NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLARQVGVPNIVVFLN 775 (1021)
Q Consensus 713 ----------------~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-~~~qt~e~l~~~~~~~ip~iIvviN 775 (1021)
.+.++|+|||||++|+++|..++..+|+++|||||+++ +.+||++|+.++..+|++++|||+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlN 179 (460)
T PTZ00327 100 KPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQN 179 (460)
T ss_pred cccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEe
Confidence 24789999999999999999999999999999999986 7899999999999999998999999
Q ss_pred eccccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeE
Q psy5021 776 KADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLM 855 (1021)
Q Consensus 776 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~ 855 (1021)
|+|+++ .+..++..+++.++++... ....+++|+||++|. |++.|+++|.+.+|.|.+..+.|++|
T Consensus 180 KiDlv~-~~~~~~~~~ei~~~l~~~~--~~~~~iipVSA~~G~-----------nI~~Ll~~L~~~lp~~~r~~~~p~r~ 245 (460)
T PTZ00327 180 KIDLVK-EAQAQDQYEEIRNFVKGTI--ADNAPIIPISAQLKY-----------NIDVVLEYICTQIPIPKRDLTSPPRM 245 (460)
T ss_pred cccccC-HHHHHHHHHHHHHHHHhhc--cCCCeEEEeeCCCCC-----------CHHHHHHHHHhhCCCCCCCCCCCcEE
Confidence 999986 3334555566777665432 245799999999883 89999999998788888888999999
Q ss_pred EEEEEEeeCC--------ceeEEEEEEEEEEeeCCCEEEEeecCC-----------eeEEEEEEEEecccccceeccCce
Q psy5021 856 PIEDVFSISG--------RGTVVTGKIERGIVKNGEEIEIVGYKQ-----------TIKTTITGIEMFKKTLDEGLAGEN 916 (1021)
Q Consensus 856 ~I~~~~~v~g--------~G~Vv~G~V~~G~l~~gd~v~i~p~~~-----------~~~~~Vksi~~~~~~~~~a~~G~~ 916 (1021)
+|+++|.+.| .|+|++|+|.+|++++||+|.+.|.+. ..+++|+||++++.++++|.|||+
T Consensus 246 ~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~ 325 (460)
T PTZ00327 246 IVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGL 325 (460)
T ss_pred EEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCE
Confidence 9999999875 799999999999999999999999641 146899999999999999999999
Q ss_pred EEEEec---ccCccCcccceEEeeCCC-ccceeeEEEEEEEeeccC-----CCC----CccccCCCEEEEEEeeceeeee
Q psy5021 917 VGILLR---SVKREEVERGQVLAKIGS-IKSYNIFECEVYILSKEE-----GGR----HTPFFNGYKPQFYFRTTDVTGI 983 (1021)
Q Consensus 917 v~l~l~---~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~-----~~~----~~~i~~G~~~~~~~~~~~~~~~ 983 (1021)
|+++|+ +++..++.||+||++++. ++.++.|+|++.|+++.. ++. ..+|+.||++++|+++.+++|+
T Consensus 326 vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~ 405 (460)
T PTZ00327 326 IGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGGR 405 (460)
T ss_pred EEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEEEE
Confidence 999997 688889999999999875 556789999999998731 000 2689999999999999999987
Q ss_pred eccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 984 CKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 984 ~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+...+. +. .++|++++|+|+.+|+||+||+
T Consensus 406 i~~i~~-------~~-~~~l~l~~P~~~~~gdr~ilr~ 435 (460)
T PTZ00327 406 VVGIKD-------DG-IAKLELTTPVCTSVGEKIALSR 435 (460)
T ss_pred EEEeCC-------Ce-EEEEEECccEeccCCCEEEEEe
Confidence 764432 11 7889999999999999999994
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-50 Score=414.47 Aligned_cols=357 Identities=26% Similarity=0.383 Sum_probs=308.6
Q ss_pred ccccceeeeeeeeeccchhhhhhhcccccccc-----------------ccccccccccCCchhhhhcCceEeeeEEEEe
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIY-----------------GGEVRAFDTIDNAPEEKERGITISTSHVEYE 710 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~-----------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~ 710 (1021)
-||-+|+|- ++.|||||+++|+.....+. ++.+.....+|-...||+.|+|||..+.+|.
T Consensus 6 lLRfiTcGS---VDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 6 LLRFITCGS---VDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred ceeEEEecc---ccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 355566654 99999999999986543322 1222333356889999999999999999999
Q ss_pred eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHH
Q psy5021 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLV 789 (1021)
Q Consensus 711 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~ 789 (1021)
++++++.+.|||||+.|.+||..|++-||++|++|||..|+..||+.|..++..+|++|+||++|||||++ ++++|+++
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 67899999
Q ss_pred HHHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCcee
Q psy5021 790 EMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT 868 (1021)
Q Consensus 790 ~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~ 868 (1021)
..++..+.+.+++.. ..+||+||+.|.|..... .++||..++|++.|.. +........+||||||+.+.+-.--=+
T Consensus 163 ~~dy~~fa~~L~~~~--~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~-v~i~~~~~~~~~RfPVQ~V~Rp~~dfR 239 (431)
T COG2895 163 VADYLAFAAQLGLKD--VRFIPISALLGDNVVSKSENMPWYKGPTLLEILET-VEIADDRSAKAFRFPVQYVNRPNLDFR 239 (431)
T ss_pred HHHHHHHHHHcCCCc--ceEEechhccCCcccccccCCCcccCccHHHHHhh-ccccccccccceeeceEEecCCCCccc
Confidence 999999999999864 589999999987765443 5789999999999986 443444556789999999988553334
Q ss_pred EEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-ccceeeE
Q psy5021 869 VVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIF 947 (1021)
Q Consensus 869 Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f 947 (1021)
-..|+|++|++++||+|.+.|++.. ++|++|..++.++++|.+|+.|+|.|.. ..|++|||+|++.+. |.+++.|
T Consensus 240 GyaGtiasG~v~~Gd~vvvlPsG~~--s~V~~Ivt~dg~~~~A~aG~aVtl~L~d--eidisRGd~i~~~~~~~~~~~~f 315 (431)
T COG2895 240 GYAGTIASGSVKVGDEVVVLPSGKT--SRVKRIVTFDGELAQASAGEAVTLVLAD--EIDISRGDLIVAADAPPAVADAF 315 (431)
T ss_pred ccceeeeccceecCCeEEEccCCCe--eeEEEEeccCCchhhccCCceEEEEEcc--eeecccCcEEEccCCCcchhhhc
Confidence 4899999999999999999998764 8999999999999999999999999985 889999999998874 6789999
Q ss_pred EEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc-----------CCCcccccCCCeEEEEEEEceeeecccC--
Q psy5021 948 ECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-----------PENVEMVLPGDNIKLNVTLLSSIAIEIG-- 1014 (1021)
Q Consensus 948 ~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~g~~~~v~~~~~~pi~~~~~-- 1014 (1021)
.|.++|+... |+.+|-+..+.+.+..+.+++.- ....+.|..|+.+.|++.+..|+++++|
T Consensus 316 ~A~vvWm~~~------pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~~~pi~fd~Y~~ 389 (431)
T COG2895 316 DADVVWMDEE------PLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISFDKPIAFDAYAE 389 (431)
T ss_pred ceeEEEecCC------CCCCCceEEEEecceEEEEEeeeeEEEEeccccccccccccCCCcceEEEEecCCceeeccccc
Confidence 9999999975 89999999999999888876632 2257889999999999999999999998
Q ss_pred ----CeEEEe
Q psy5021 1015 ----LRFAIR 1020 (1021)
Q Consensus 1015 ----~rf~lr 1020 (1021)
++|||=
T Consensus 390 N~atG~FIlI 399 (431)
T COG2895 390 NRATGSFILI 399 (431)
T ss_pred CcccccEEEE
Confidence 688873
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=428.64 Aligned_cols=266 Identities=52% Similarity=0.908 Sum_probs=257.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+|+||+|||||||+++|++.+|.+.+.|.++++++++|+.++|++||+|++++..++.|+ +++++|||||||.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK----DHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC----CEEEEEEECCCcHH
Confidence 89999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeeecc
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIG 169 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p~~ 169 (1021)
|..++.++++.+|++|+|||+.+|++.+++.+|+.+...++|+++|+||+|+.++++++.++++++.++..+.+.++|+.
T Consensus 77 f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pis 156 (270)
T cd01886 77 FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIG 156 (270)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEecccceeeeecC--C-CeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHHHHH
Q psy5021 170 IEENYEGIVDIINKKSFFWKE--N-SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKL 245 (1021)
Q Consensus 170 ~~~~~~g~id~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~~~~ 245 (1021)
..+.|.|++|++++++|.|.. + .+...++|++..+.+.++|++|+|.+++.||+|||+||++ +++.+++..+++++
T Consensus 157 a~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~ 236 (270)
T cd01886 157 EEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKG 236 (270)
T ss_pred cCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 999999999999999999943 2 2677899999999999999999999999999999999999 99999999999999
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCCCC
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 279 (1021)
+..+.++|||||||.++.|++.||+.|++++|+|
T Consensus 237 ~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 237 TIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred HHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999998
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-50 Score=420.63 Aligned_cols=361 Identities=28% Similarity=0.420 Sum_probs=321.0
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeCCeE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH 715 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~ 715 (1021)
....-+.||+++||||+-+.|+.....+. +..-...|++|...+||+.|.|+..+..+|++..+.
T Consensus 79 hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ 158 (501)
T KOG0459|consen 79 HVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKR 158 (501)
T ss_pred CceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEeccee
Confidence 45667889999999999988875433332 112233468999999999999999999999999999
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc---hhhH
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQ---DKEL 785 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~~ 785 (1021)
++++|+|||..|+++|+.++.+||.++||++|..|.+ +||+||..+++..|+.++||++||||-.. .++|
T Consensus 159 ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eR 238 (501)
T KOG0459|consen 159 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNER 238 (501)
T ss_pred EEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhh
Confidence 9999999999999999999999999999999988775 69999999999999999999999999653 4689
Q ss_pred HHHHHHHHHHhhhccccCCC-ceEEEEecccccccCCCCC--ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEe
Q psy5021 786 LDLVEMEIRELLTEYDFDGE-NTKIVIGSALLALEGKDDN--QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFS 862 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~~~~~~-~~~ii~iSa~~~~~~~~~~--~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~ 862 (1021)
+++++.++..+|+.+||++. ...++|+|+.+|.+.++.. ...|+.++.+|+.|++ ++...|..+.|++++|.+-|+
T Consensus 239 y~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~-l~~~~R~~~GP~~~pI~~Kyk 317 (501)
T KOG0459|consen 239 YEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDE-LPHLERILNGPIRCPVANKYK 317 (501)
T ss_pred HHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehhc-cCcccccCCCCEEeehhhhcc
Confidence 99999999999999999754 4679999999998776554 5889999999999998 888889999999999999987
Q ss_pred eCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-c
Q psy5021 863 ISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-I 941 (1021)
Q Consensus 863 v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~ 941 (1021)
.+|||+.|+|++|++++||.+.++|.+.. +.|.+|...+..++.+.||+++.|.|+++..+||..|.|||++++ .
T Consensus 318 --dmGTvv~GKvEsGsi~kg~~lvvMPnk~~--veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n~~ 393 (501)
T KOG0459|consen 318 --DMGTVVGGKVESGSIKKGQQLVVMPNKTN--VEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNNPC 393 (501)
T ss_pred --ccceEEEEEecccceecCCeEEEccCCcc--eEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCCcc
Confidence 66799999999999999999999997654 789999999999999999999999999999999999999999886 5
Q ss_pred cceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc------------CCCcccccCCCeEEEEEEEceee
Q psy5021 942 KSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL------------PENVEMVLPGDNIKLNVTLLSSI 1009 (1021)
Q Consensus 942 ~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~------------~~~~~~l~~g~~~~v~~~~~~pi 1009 (1021)
.+.+.|+|+|.+++|. .-|..||.++||+|++-..+.+++ +..+++++.|+.++++|+...||
T Consensus 394 ~s~~~F~aqi~IlE~~-----sIi~~GY~~VlHIht~ieEv~i~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~~i 468 (501)
T KOG0459|consen 394 KSGRTFDAQIVILEHK-----SIICAGYSCVLHIHTAVEEVEIKLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEGPI 468 (501)
T ss_pred ccccEEEEEEEEEecC-----ceeccCcceEeeeeeehhheeeeeeeeecccccccccCCCeeecCCcEEEEEEecCCcE
Confidence 7999999999999997 489999999999999776654433 24799999999999999999999
Q ss_pred ecccC------CeEEEeC
Q psy5021 1010 AIEIG------LRFAIRE 1021 (1021)
Q Consensus 1010 ~~~~~------~rf~lr~ 1021 (1021)
|++++ +||.||+
T Consensus 469 Cle~fkd~pqmgRFtLRd 486 (501)
T KOG0459|consen 469 CLETFKDYPQMGRFTLRD 486 (501)
T ss_pred ehhhcccchhhcceEEec
Confidence 99997 7999997
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=472.18 Aligned_cols=358 Identities=24% Similarity=0.340 Sum_probs=307.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc-----------------cccccccccCCchhhhhcCceEeeeEEEEeeCC
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG-----------------GEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-----------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~ 713 (1021)
.+.++++||+|||||||+|+|+.....+.. +.+...+.+|..++|+++|+|++.....+++++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 356889999999999999999976554431 233344678999999999999999999999999
Q ss_pred eEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHHHHH
Q psy5021 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEME 792 (1021)
Q Consensus 714 ~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~~~~ 792 (1021)
..++|+|||||++|.++|..++..+|+++||||+..|...|+++|+.++..++++++||++||+|+++ ++++++.+..+
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~ 183 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVAD 183 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999985 34567778888
Q ss_pred HHHhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEE
Q psy5021 793 IRELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVT 871 (1021)
Q Consensus 793 ~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~ 871 (1021)
+.++++.++|. +.+++|+||++|.+.... ....|+..++|++.|.. ++.|.+..++|+||+|+++|+....+..++
T Consensus 184 i~~~~~~~~~~--~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~ 260 (632)
T PRK05506 184 YRAFAAKLGLH--DVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET-VEIASDRNLKDFRFPVQYVNRPNLDFRGFA 260 (632)
T ss_pred HHHHHHHcCCC--CccEEEEecccCCCccccccCCCcccHhHHHHHHhc-CCCCCCcCCCCceeeEEEEEecCCCceEEE
Confidence 88888888873 578999999998655432 24578888999999987 455666678999999999987542222278
Q ss_pred EEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-ccceeeEEEE
Q psy5021 872 GKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIFECE 950 (1021)
Q Consensus 872 G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~a~ 950 (1021)
|+|++|+|++||+|.+.|.+. +++|+||++++.++++|.|||+|+++|++ ..++++|+|||+++. +..+++|+|+
T Consensus 261 G~v~~G~l~~gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~~~~~~~~~f~a~ 336 (632)
T PRK05506 261 GTVASGVVRPGDEVVVLPSGK--TSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARADNRPEVADQFDAT 336 (632)
T ss_pred EEEecceeecCCEEEEcCCCc--eEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCCCCCcceeEEEEE
Confidence 999999999999999999764 58999999999999999999999999985 578999999999874 6679999999
Q ss_pred EEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-----------CCcccccCCCeEEEEEEEceeeecccC-----
Q psy5021 951 VYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-----------ENVEMVLPGDNIKLNVTLLSSIAIEIG----- 1014 (1021)
Q Consensus 951 i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~g~~~~v~~~~~~pi~~~~~----- 1014 (1021)
+.+++++ ++.+||++++|+|+.+++|++... .+++++.+|+.+.|+|++++|+|++++
T Consensus 337 i~~l~~~------~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi~~e~~~~~~~ 410 (632)
T PRK05506 337 VVWMAEE------PLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLERLAAKTLELNEIGRCNLSTDAPIAFDPYARNRT 410 (632)
T ss_pred EEEeccc------ccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCccCCcceeCCCCEEEEEEEECCEEeeeecccccc
Confidence 9999864 688999999999999999877432 357899999999999999999999998
Q ss_pred -CeEEEeC
Q psy5021 1015 -LRFAIRE 1021 (1021)
Q Consensus 1015 -~rf~lr~ 1021 (1021)
+||+||+
T Consensus 411 lGRfilrd 418 (632)
T PRK05506 411 TGSFILID 418 (632)
T ss_pred CceEEEEe
Confidence 5799964
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=461.73 Aligned_cols=323 Identities=29% Similarity=0.471 Sum_probs=283.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCChhhhHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~~~~~~~ 730 (1021)
+.+|.+||+|||||||+++|++.. +|+.++|+++|+|++..+..+.. ++..++|||||||++|.++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~-------------~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~ 67 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVN-------------ADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSN 67 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-------------CccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHH
Confidence 357999999999999999999732 48889999999999999887765 4567899999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
|..++..+|++++|||+++|..+||++|+.++..+++|++|||+||+|+++ +++++.+.+++.++++..++. ..+++
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~-~~~~~~v~~ei~~~l~~~~~~--~~~ii 144 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD-EARIAEVRRQVKAVLREYGFA--EAKLF 144 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC-HHHHHHHHHHHHHHHHhcCCC--CCcEE
Confidence 999999999999999999999999999999999999998889999999986 445666777888888777653 46899
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY 890 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~ 890 (1021)
++||++|. |+++|+++|.+. +.+.+..+.||||+|+++|+++|.|+|++|+|.+|+|++||++.+.|.
T Consensus 145 ~VSA~tG~-----------gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~ 212 (614)
T PRK10512 145 VTAATEGR-----------GIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGV 212 (614)
T ss_pred EEeCCCCC-----------CCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCC
Confidence 99999883 889999999874 445566789999999999999999999999999999999999999986
Q ss_pred CCeeEEEEEEEEecccccceeccCceEEEEecc-cCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCCC
Q psy5021 891 KQTIKTTITGIEMFKKTLDEGLAGENVGILLRS-VKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGY 969 (1021)
Q Consensus 891 ~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~-~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~ 969 (1021)
+. .++|+||++|+.++++|.|||+|+++|++ ++..++++|||||+++++.++..+.+. +.+. .||+.|+
T Consensus 213 ~~--~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~~~~~~~~~~~---l~~~-----~~l~~~~ 282 (614)
T PRK10512 213 NK--PMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVE---LQTH-----TPLTQWQ 282 (614)
T ss_pred CC--cEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCCCccceeEEEE---EcCC-----ccCCCCC
Confidence 54 58999999999999999999999999997 899999999999988777777766554 4433 4899999
Q ss_pred EEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 970 KPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 970 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
++++|+++.++.|++... +.+.+++++++|+|+..|+||+||+
T Consensus 283 ~~~~~~gt~~~~~~i~~l---------~~~~~~l~l~~p~~~~~gdr~ilr~ 325 (614)
T PRK10512 283 PLHIHHAASHVTGRVSLL---------EDNLAELVLDTPLWLADNDRLVLRD 325 (614)
T ss_pred EEEEEEcccEEEEEEEEc---------CCeEEEEEECCcccccCCCEEEEEe
Confidence 999999999999887655 3468999999999999999999996
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=431.04 Aligned_cols=334 Identities=35% Similarity=0.484 Sum_probs=281.2
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe--------------e----
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE--------------S---- 711 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~--------------~---- 711 (1021)
..++.+++||++||||||+++|++. .+|++++|+++|+|++..+..++ .
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~-------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVC 69 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCe-------------ecccCHhHHHcCceeEecccccccccccccCccccccccccc
Confidence 4578899999999999999999752 25899999999999998865432 1
Q ss_pred --------CCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEeeccccch
Q psy5021 712 --------ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFLNKADCVQD 782 (1021)
Q Consensus 712 --------~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~ 782 (1021)
.++.++|||||||++|.++|..++..+|++++||||++|. ..|+++|+.++..++++++||++||+|+++.
T Consensus 70 ~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 70 PNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred cccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence 1467999999999999999999999999999999999988 8999999999999998889999999999863
Q ss_pred hhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEe
Q psy5021 783 KELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFS 862 (1021)
Q Consensus 783 ~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~ 862 (1021)
+. .....+++.++++... ...++++++||++|. |+++|+++|.+.++.|.+..++|++|+|+++|.
T Consensus 150 ~~-~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~-----------gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~ 215 (406)
T TIGR03680 150 EK-ALENYEEIKEFVKGTV--AENAPIIPVSALHNA-----------NIDALLEAIEKFIPTPERDLDKPPLMYVARSFD 215 (406)
T ss_pred HH-HHHHHHHHHhhhhhcc--cCCCeEEEEECCCCC-----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEe
Confidence 22 2222345555554432 235789999999873 889999999987787778889999999999998
Q ss_pred eCC--------ceeEEEEEEEEEEeeCCCEEEEeecCC----------eeEEEEEEEEecccccceeccCceEEEEec--
Q psy5021 863 ISG--------RGTVVTGKIERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKKTLDEGLAGENVGILLR-- 922 (1021)
Q Consensus 863 v~g--------~G~Vv~G~V~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~-- 922 (1021)
++| .|+|++|+|.+|+|++||+|.+.|.+. ...++|+||++++.++++|.|||+|+++|+
T Consensus 216 v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~ 295 (406)
T TIGR03680 216 VNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLD 295 (406)
T ss_pred ecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccC
Confidence 877 567999999999999999999999742 135799999999999999999999999984
Q ss_pred -ccCccCcccceEEeeCCC-ccceeeEEEEEEEeeccCCC----CCccccCCCEEEEEEeeceeeeeeccCCCcccccCC
Q psy5021 923 -SVKREEVERGQVLAKIGS-IKSYNIFECEVYILSKEEGG----RHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPG 996 (1021)
Q Consensus 923 -~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~~~----~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g 996 (1021)
+++..++++|+|||+++. |..++.|+|++.++.+..+. ...+|+.||++++|+++.+++|++...+.
T Consensus 296 ~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~~------- 368 (406)
T TIGR03680 296 PALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSARK------- 368 (406)
T ss_pred CCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcCC-------
Confidence 688899999999999875 66789999999999863110 12689999999999999999988765542
Q ss_pred CeEEEEEEEceeeecccCCeEEE
Q psy5021 997 DNIKLNVTLLSSIAIEIGLRFAI 1019 (1021)
Q Consensus 997 ~~~~v~~~~~~pi~~~~~~rf~l 1019 (1021)
+ .+++++.+|+|+..|+||+|
T Consensus 369 ~--~~~l~l~~p~~~~~g~r~~~ 389 (406)
T TIGR03680 369 D--EIEVKLKRPVCAEEGDRVAI 389 (406)
T ss_pred c--EEEEEECCcEEcCCCCEEEE
Confidence 2 47888999999999999999
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=429.45 Aligned_cols=338 Identities=33% Similarity=0.463 Sum_probs=282.5
Q ss_pred CcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee--------------
Q psy5021 646 STDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-------------- 711 (1021)
Q Consensus 646 ~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-------------- 711 (1021)
...-..++.+++||.+||||||+++|++. ++|++++|+++|+|++.....+.+
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-------------~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~ 70 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGV-------------WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTT 70 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCe-------------ecccCHhHHhcCcEEEecccccccccccccCccccccc
Confidence 44556789999999999999999999652 369999999999999987643222
Q ss_pred C------------CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEeecc
Q psy5021 712 E------------NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFLNKAD 778 (1021)
Q Consensus 712 ~------------~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~D 778 (1021)
. .+.++|||||||++|.+++..++..+|++++|+|++++. ..++.+++..+..++++++++|+||+|
T Consensus 71 ~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~D 150 (411)
T PRK04000 71 EPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKID 150 (411)
T ss_pred cccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeec
Confidence 1 257899999999999999999999999999999999987 789999999998899877999999999
Q ss_pred ccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEE
Q psy5021 779 CVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIE 858 (1021)
Q Consensus 779 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~ 858 (1021)
+.+.+. .....+++..+++... ..+.+++++||++|. |+++|+++|.+.++.|.+..++|++|+|+
T Consensus 151 l~~~~~-~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~-----------gI~~L~~~L~~~l~~~~~~~~~~~r~~I~ 216 (411)
T PRK04000 151 LVSKER-ALENYEQIKEFVKGTV--AENAPIIPVSALHKV-----------NIDALIEAIEEEIPTPERDLDKPPRMYVA 216 (411)
T ss_pred cccchh-HHHHHHHHHHHhcccc--CCCCeEEEEECCCCc-----------CHHHHHHHHHHhCCCCCCCCCCCceEEEE
Confidence 986322 2222345555554321 234789999999873 89999999998788787888999999999
Q ss_pred EEEeeCCc--------eeEEEEEEEEEEeeCCCEEEEeecCC----------eeEEEEEEEEecccccceeccCceEEEE
Q psy5021 859 DVFSISGR--------GTVVTGKIERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKKTLDEGLAGENVGIL 920 (1021)
Q Consensus 859 ~~~~v~g~--------G~Vv~G~V~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~~~~~a~~G~~v~l~ 920 (1021)
++|+++|. |+|++|+|.+|++++||+|.+.|.++ ...++|+||++++.++++|.|||+|+++
T Consensus 217 ~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~ 296 (411)
T PRK04000 217 RSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVG 296 (411)
T ss_pred eeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEE
Confidence 99998774 56999999999999999999999753 1358999999999999999999999999
Q ss_pred ec---ccCccCcccceEEeeCCC-ccceeeEEEEEEEeeccCCCC----CccccCCCEEEEEEeeceeeeeeccCCCccc
Q psy5021 921 LR---SVKREEVERGQVLAKIGS-IKSYNIFECEVYILSKEEGGR----HTPFFNGYKPQFYFRTTDVTGICKLPENVEM 992 (1021)
Q Consensus 921 l~---~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~~~~----~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~ 992 (1021)
|+ +++..++++|+|||+++. ++.+++|+|++.++++..++. .++|+.||++++|+++.+++|+++..+.
T Consensus 297 l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~--- 373 (411)
T PRK04000 297 TKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSARK--- 373 (411)
T ss_pred eccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEEEEcCC---
Confidence 96 677889999999999875 567899999999999721111 2589999999999999999987765542
Q ss_pred ccCCCeEEEEEEEceeeecccCCeEEE
Q psy5021 993 VLPGDNIKLNVTLLSSIAIEIGLRFAI 1019 (1021)
Q Consensus 993 l~~g~~~~v~~~~~~pi~~~~~~rf~l 1019 (1021)
+ .+++++.+|+|+++|+||+|
T Consensus 374 ----~--~~~~~l~~p~~~~~g~r~~~ 394 (411)
T PRK04000 374 ----D--EAEVKLKRPVCAEEGDRVAI 394 (411)
T ss_pred ----c--EEEEEECCcEecCCCCEEEE
Confidence 3 67888999999999999999
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=404.14 Aligned_cols=330 Identities=33% Similarity=0.452 Sum_probs=286.8
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+|.+||.+||||||+.++++.. .|+.++|..+|+|+|.+..+++.+++.+.|+|+|||++|+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~-------------~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGV-------------TDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccc-------------cccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHH
Confidence 57899999999999999999854 59999999999999999999999999999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEe
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIG 812 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~i 812 (1021)
.++...|+|+||||+++|+..||.||+..+..+|+++.++|+||+|.++ +.+.++..+++. ..+.+ .+.+++++
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d-~~r~e~~i~~Il---~~l~l--~~~~i~~~ 142 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVD-EARIEQKIKQIL---ADLSL--ANAKIFKT 142 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEecccccc-HHHHHHHHHHHH---hhccc--cccccccc
Confidence 9999999999999999999999999999999999999999999999997 334444444444 33333 35678999
Q ss_pred cccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCC
Q psy5021 813 SALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQ 892 (1021)
Q Consensus 813 Sa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~ 892 (1021)
|+++| +|+++|.+.|.+....+.+..+.||+++|++.|+++|+||||+|++.+|.+++||++++.|.++
T Consensus 143 s~~~g-----------~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k 211 (447)
T COG3276 143 SAKTG-----------RGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINK 211 (447)
T ss_pred ccccC-----------CCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCC
Confidence 99988 4899999999885544677889999999999999999999999999999999999999999876
Q ss_pred eeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCCCEEE
Q psy5021 893 TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQ 972 (1021)
Q Consensus 893 ~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~ 972 (1021)
. ++|||||.++.++++|.||++|+++|++++.+++.||++|+++++..++..|++++.+.... ..++..|...+
T Consensus 212 ~--v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~~~v~~~~~~~~~i~~~~----~~~l~~~~~~h 285 (447)
T COG3276 212 E--VRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEIDPLF----KKTLKQGQPVH 285 (447)
T ss_pred e--EEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCCCCcceEEEEEEEecccc----ccccCCCceEE
Confidence 5 89999999999999999999999999999999999999999999888999999998887543 26899999999
Q ss_pred EEEeeceeeeeeccCCC------cccccCCCeEEEEEEEceeeecccCCeEE
Q psy5021 973 FYFRTTDVTGICKLPEN------VEMVLPGDNIKLNVTLLSSIAIEIGLRFA 1018 (1021)
Q Consensus 973 ~~~~~~~~~~~~~~~~~------~~~l~~g~~~~v~~~~~~pi~~~~~~rf~ 1018 (1021)
+|++..++++++...+. .+++..++...+.++...+.....|.|++
T Consensus 286 i~~g~~~~~~~i~~l~~~~~l~~~k~i~~~~~~~l~lr~~~a~~~~~g~rvl 337 (447)
T COG3276 286 IHVGLRSVTGRIVPLEKNAELNLVKPIALGDNDRLVLRDNSAVIKLAGARVL 337 (447)
T ss_pred EEEeccccceEeeeccccceeeeecccccccCceEEEEcccceeeeccceEE
Confidence 99999999977654332 34556666666677777776666666665
|
|
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=395.91 Aligned_cols=352 Identities=22% Similarity=0.281 Sum_probs=295.2
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEE------------------
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEY------------------ 709 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~------------------ 709 (1021)
++-...++.+|.+++|||||++.|++.+. .++...+.+-+++|+||.++|.|.+...-.+
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeL--DnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~ 207 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGEL--DNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHN 207 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeeccc--ccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCc
Confidence 44457788999999999999999999554 4455555566899999999999987653211
Q ss_pred -------eeCCeEEEEEecCChhhhHHHHHHHhhh--CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 710 -------ESENKHYAHVDCPGHADYIKNMITGAAQ--MDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 710 -------~~~~~~i~liDtpG~~~~~~~~~~~~~~--aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
+...+.++|||.+||++|+++++.++.. .|+.+|+|.|+.|+.+.|+||+.++.++.+| ++||++|+|++
T Consensus 208 LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VP-VfvVVTKIDMC 286 (641)
T KOG0463|consen 208 LDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVP-VFVVVTKIDMC 286 (641)
T ss_pred ccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCc-EEEEEEeeccC
Confidence 1223678999999999999999999864 6999999999999999999999999999999 88899999999
Q ss_pred chhhHHHHHHHHHHHhhhccccCC---------------------CceEEEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 781 QDKELLDLVEMEIRELLTEYDFDG---------------------ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~~~~~~---------------------~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
.. ..+++..+.+..+++.-|... .-+|||.+|..+|. |++-|... .
T Consensus 287 PA-NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~-----------NL~LLkmF-L 353 (641)
T KOG0463|consen 287 PA-NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGT-----------NLPLLKMF-L 353 (641)
T ss_pred cH-HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCC-----------ChHHHHHH-H
Confidence 73 345555566667776544221 12577778877763 55544433 3
Q ss_pred ccCCC-CCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec--CCeeEEEEEEEEecccccceeccCce
Q psy5021 840 SSIPT-PNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY--KQTIKTTITGIEMFKKTLDEGLAGEN 916 (1021)
Q Consensus 840 ~~l~~-~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~--~~~~~~~Vksi~~~~~~~~~a~~G~~ 916 (1021)
+.++. ..-..+.|..|.|+++|.++|+|+|++|++.+|+|+.+|.++++|. +.++...|||||..+-++..+.+||.
T Consensus 354 Nlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQt 433 (641)
T KOG0463|consen 354 NLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQT 433 (641)
T ss_pred hhcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccch
Confidence 43432 1224567999999999999999999999999999999999999874 56889999999999999999999999
Q ss_pred EEEEecccCccCcccceEEeeCC-CccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccCCCcccccC
Q psy5021 917 VGILLRSVKREEVERGQVLAKIG-SIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLP 995 (1021)
Q Consensus 917 v~l~l~~~~~~~i~~G~vl~~~~-~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~ 995 (1021)
+.++|+.++..++++|+|+.++. .|.++|.|+|+|.+++|+ ++|++.||+++||++++|+|.+..+. .+||+.
T Consensus 434 ASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILVLHHP-----TTIsprYQAMvHcGSiRQTAtivsM~-kdcLRT 507 (641)
T KOG0463|consen 434 ASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILVLHHP-----TTISPRYQAMVHCGSIRQTATIVSMG-KDCLRT 507 (641)
T ss_pred hhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEEEecC-----CccCcchhheeeeccccceeeeeecC-hhhhhc
Confidence 99999999999999999999998 599999999999999998 79999999999999999998775554 599999
Q ss_pred CCeEEEEEEEc-eeeecccCCeEEEeC
Q psy5021 996 GDNIKLNVTLL-SSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 996 g~~~~v~~~~~-~pi~~~~~~rf~lr~ 1021 (1021)
||++.|+|+|. .|.++.+++|.++||
T Consensus 508 GDka~V~FrFIkqPEYir~gqrlVFRE 534 (641)
T KOG0463|consen 508 GDKAKVQFRFIKQPEYIRPGQRLVFRE 534 (641)
T ss_pred CCcceEEEEEecCcceecCCceEEeec
Confidence 99999999977 799999999999997
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=399.55 Aligned_cols=258 Identities=28% Similarity=0.503 Sum_probs=241.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc----CCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH----HGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~----~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
++|||+|+||+|+|||||+++|++.+|.+.+.|.++ .+++++|+.+.|++||+|+..+..++.|+ ++++++|
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~----~~~i~li 76 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR----DCVINLL 76 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC----CEEEEEE
Confidence 589999999999999999999999999999999987 58889999999999999999999999999 9999999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCcee
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 162 (1021)
|||||.+|..++..+++.+|++|+|+|++.+++.+++.+|+.+...++|+++|+||+|+..+++.++++++++.++..++
T Consensus 77 DTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~ 156 (267)
T cd04169 77 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCT 156 (267)
T ss_pred ECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCce
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred eeeeecccCCceeeEEecccceeeeecC--CC--eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKE--NS--IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSIND 237 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~ 237 (1021)
++++|++.++.|.|++|++++++|.|.. +. ....++|++.. |.+++.||+|||+|+++ +++.++
T Consensus 157 ~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~ 225 (267)
T cd04169 157 PLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGA 225 (267)
T ss_pred eEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhh
Confidence 9999999999999999999999999933 22 34455565432 78899999999999999 888889
Q ss_pred HHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCC
Q psy5021 238 IKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279 (1021)
Q Consensus 238 ~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 279 (1021)
+...+++++..+.++|||||||.+|.|++.|||+|++++|+|
T Consensus 226 ~~~~~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 226 GPEFDQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHhHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999999999998
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=432.94 Aligned_cols=323 Identities=30% Similarity=0.446 Sum_probs=273.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.++++|++|||||||+++|++.. +++.++|+.+|+|++..+..+++++..++|||||||++|.++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~-------------~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIA-------------ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc-------------CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHH
Confidence 357899999999999999999732 4777889999999999999999988999999999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVI 811 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~ 811 (1021)
..++.++|++++|||+++|..+|+.+|+.++..+|+|++|||+||+|+++ ++.++.+.+++.++++.+++.. +.++++
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~-~~~~~~~~~ei~~~l~~~~~~~-~~~ii~ 145 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN-EEEIKRTEMFMKQILNSYIFLK-NAKIFK 145 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC-HHHHHHHHHHHHHHHHHhCCCC-CCcEEE
Confidence 99999999999999999999999999999999999999999999999986 4445566677888887766532 478999
Q ss_pred ecccccccCCCCCccCcchHHHHHHhhhccCCCC-CCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec
Q psy5021 812 GSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP-NRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY 890 (1021)
Q Consensus 812 iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~-~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~ 890 (1021)
+||++|. |++++++.|.+.+... ....+.||+|+|+++|+++|.|+|++|+|.+|++++||++.+.|.
T Consensus 146 vSA~tG~-----------GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~ 214 (581)
T TIGR00475 146 TSAKTGQ-----------GIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPI 214 (581)
T ss_pred EeCCCCC-----------CchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCC
Confidence 9999884 5666666655433211 112578999999999999999999999999999999999999997
Q ss_pred CCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCCCE
Q psy5021 891 KQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYK 970 (1021)
Q Consensus 891 ~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~ 970 (1021)
+. .++|+||+.+++++++|.|||+|+++|++++.+++++|.+++++..+ +..+.+.+.. . .+|+.||.
T Consensus 215 ~~--~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~--~~~~~~~~~~---~-----~~l~~~~~ 282 (581)
T TIGR00475 215 NH--EVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP--KLRVVVKFIA---E-----VPLLELQP 282 (581)
T ss_pred Cc--eEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC--CceEEEEEEc---C-----CccCCCCe
Confidence 54 58999999999999999999999999999999999999888765422 2233333222 1 37999999
Q ss_pred EEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 971 PQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+++|+++.++.|++...+. ..+++++++|+++..|+||++|+
T Consensus 283 ~~~~~gt~~~~~~i~~l~~---------~~~~l~l~~P~~~~~gd~~i~r~ 324 (581)
T TIGR00475 283 YHIAHGMSVTTGKISLLDK---------GIALLTLDAPLILAKGDKLVLRD 324 (581)
T ss_pred EEEEEeceEEEEEEEEccC---------cEEEEEECCceecCCCCEEEEEe
Confidence 9999999999988766543 17889999999999999999996
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=385.85 Aligned_cols=266 Identities=30% Similarity=0.633 Sum_probs=256.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+|+||+|+|||||+++|++..+.+.+.|++..|++.+|+.+.|++|++|+.++...+.|. ++.+++||||||.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~----~~~i~liDtPG~~~ 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK----GHKINLIDTPGYAD 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC----CEEEEEEECcCHHH
Confidence 79999999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeeecc
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIG 169 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p~~ 169 (1021)
|..++..+++.+|++++|+|++.+...++..+|+++...++|.++|+||+|+.++++.+.++++++.++.++++.++|++
T Consensus 77 f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~ 156 (268)
T cd04170 77 FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIG 156 (268)
T ss_pred HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEecccceeeeecCCC-eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHHHHHHh
Q psy5021 170 IEENYEGIVDIINKKSFFWKENS-IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKLVL 247 (1021)
Q Consensus 170 ~~~~~~g~id~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~~~~~~ 247 (1021)
.++.|.|++|++.++.+.|.++. ....++|++..+.+.++|.+|+|.+++.||+|||+||++ +++++++...+++++.
T Consensus 157 ~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~ 236 (268)
T cd04170 157 EGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALR 236 (268)
T ss_pred CCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999996544 566789999999999999999999999999999999999 9999999999999999
Q ss_pred cCceeEEEeccccCcccHHHHHHHHHHhCCCC
Q psy5021 248 KNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279 (1021)
Q Consensus 248 ~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 279 (1021)
.+.++|||||||+++.|++.|++++.+++|+|
T Consensus 237 ~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 237 AGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred hCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999998
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=372.50 Aligned_cols=236 Identities=44% Similarity=0.684 Sum_probs=221.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+++||+|+|||||+++|++.+|.+.+.|+++.+++++|+.+.|++||+|+......+.|+ ++++++||||||.+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~----~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE----DTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC----CEEEEEEeCCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeeecc
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIG 169 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p~~ 169 (1021)
|..++.++++.+|++++|+|+++|++.+++.+|+.+...++|+++|+||+|+.+++++++++++++.++.+++|+|+|+.
T Consensus 77 f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 77 FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999941
Q ss_pred cCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Q psy5021 170 IEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKLVLK 248 (1021)
Q Consensus 170 ~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~~~~~~~ 248 (1021)
++... . ..+++++|+|.+++.||+|||+||++ +++.+++.+++++++..
T Consensus 157 --------~~~~~-----------~-----------~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~ 206 (237)
T cd04168 157 --------APNIC-----------E-----------TNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAK 206 (237)
T ss_pred --------eeeee-----------e-----------eeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 11100 0 11234789999999999999999999 99999999999999999
Q ss_pred CceeEEEeccccCcccHHHHHHHHHHhCCCC
Q psy5021 249 NKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279 (1021)
Q Consensus 249 ~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 279 (1021)
+.++|||||||.++.|++.||++|++++|+|
T Consensus 207 ~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 207 RKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred CCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=342.33 Aligned_cols=442 Identities=21% Similarity=0.261 Sum_probs=338.0
Q ss_pred hhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCC-CHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCC
Q psy5021 526 KEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDS-SEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPS 604 (1021)
Q Consensus 526 ~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s-~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~ 604 (1021)
.+-++.+..-..|-+.+|- |+.+..+.|. |+.+-..-+ .++--...+-+-+.+++-..-.+|-| -+|.+-.
T Consensus 74 ~~r~~hlitqMKWRLrEG~--GEAiYeIGVe--D~G~l~GL~deemnaSL~TL~~MA~~lGAs~~vLre----k~v~~~~ 145 (591)
T KOG1143|consen 74 TSRIQHLITQMKWRLREGQ--GEAIYEIGVE--DGGILSGLTDEEMNASLRTLRTMAQALGASMVVLRE----KDVTVKG 145 (591)
T ss_pred HHHHHHHHHHHHhhhhcCC--CcEEEEeeec--cCceeeccCHHHHHHHHHHHHHHHHHhCCceEEEEe----eeeeccC
Confidence 4567888899999999994 8887655543 444432211 12211112223333444322223332 2444444
Q ss_pred ccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeeeccchhhhhhhccccccccccccc
Q psy5021 605 EFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVR 684 (1021)
Q Consensus 605 ~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~ 684 (1021)
+.--.|...|-+ .+|-.+ +.-....+..|..++|||||++.|+..+.+.+++ +
T Consensus 146 ~~~R~v~EVLVR-------------------KvPd~Q------qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~G--r 198 (591)
T KOG1143|consen 146 SSRRTVVEVLVR-------------------KVPDSQ------QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNG--R 198 (591)
T ss_pred CCcchhhhhhhh-------------------hCCCcc------cceEEEEEEecCcccCcceeeeeeecccccCCCC--e
Confidence 433344444433 122221 1223566788889999999999999966554444 4
Q ss_pred cccccCCchhhhhcCceEeeeEEEE---------------------eeCCeEEEEEecCChhhhHHHHHHHhhh--CCEE
Q psy5021 685 AFDTIDNAPEEKERGITISTSHVEY---------------------ESENKHYAHVDCPGHADYIKNMITGAAQ--MDGA 741 (1021)
Q Consensus 685 ~~~~~d~~~~e~~~G~Ti~~~~~~~---------------------~~~~~~i~liDtpG~~~~~~~~~~~~~~--aD~a 741 (1021)
+...++++.||.+.|.|..+..-.+ +.+.+.++|+|.+||.+|.++++.++.. .|+|
T Consensus 199 ARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A 278 (591)
T KOG1143|consen 199 ARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFA 278 (591)
T ss_pred eeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceE
Confidence 5556899999999999987775432 2345789999999999999999999965 6999
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC-----------------
Q psy5021 742 ILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG----------------- 804 (1021)
Q Consensus 742 ilVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~----------------- 804 (1021)
+|||+|+.|....|+||+.++.++++| ++|+++|||++. ..-.+...+++.+++.+.|...
T Consensus 279 ~LvVsA~~Gi~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~~-~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~ 356 (591)
T KOG1143|consen 279 CLVVSADRGITWTTREHLGLIAALNIP-FFVLVTKMDLVD-RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQE 356 (591)
T ss_pred EEEEEcCCCCccccHHHHHHHHHhCCC-eEEEEEeecccc-chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHH
Confidence 999999999999999999999999999 888999999997 3345667778888888766432
Q ss_pred ----CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCC------CCCCCCeeEEEEEEEeeCCceeEEEEEE
Q psy5021 805 ----ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPN------RITDKPFLMPIEDVFSISGRGTVVTGKI 874 (1021)
Q Consensus 805 ----~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~------~~~~~p~~~~I~~~~~v~g~G~Vv~G~V 874 (1021)
..+|++.+|..+| ++++.| ..+.+.+++.- +....|..|.|+++|+++.+|+|+.|.+
T Consensus 357 ~~s~nivPif~vSsVsG-----------egl~ll-~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~L 424 (591)
T KOG1143|consen 357 LCSGNIVPIFAVSSVSG-----------EGLRLL-RTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGML 424 (591)
T ss_pred hccCCceeEEEEeecCc-----------cchhHH-HHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCccccccccee
Confidence 2357777777766 244433 33333333211 1235688999999999999999999999
Q ss_pred EEEEeeCCCEEEEeecC--CeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC-CccceeeEEEEE
Q psy5021 875 ERGIVKNGEEIEIVGYK--QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG-SIKSYNIFECEV 951 (1021)
Q Consensus 875 ~~G~l~~gd~v~i~p~~--~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~-~~~~~~~f~a~i 951 (1021)
.+|.++.|+.+.++|.+ .+.+.+|.||+.++.++..+.|||.+.|+|..-+...+++|||+..++ +|..+..|+|++
T Consensus 425 s~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~ 504 (591)
T KOG1143|consen 425 SEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANL 504 (591)
T ss_pred eeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeee
Confidence 99999999999999854 578899999999999999999999999999987788899999999876 699999999999
Q ss_pred EEeeccCCCCCccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEE-ceeeecccCCeEEEeC
Q psy5021 952 YILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTL-LSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 952 ~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~-~~pi~~~~~~rf~lr~ 1021 (1021)
.++-|. +.|..|+|.++|+++.+++|.++-....++|++|++|.|.|.| .+|.++.+|.|++|||
T Consensus 505 ~lLfHa-----T~i~~GFQ~TVhiGsvrqTAvi~~I~~~d~lrtg~~AvV~f~F~~hPEyir~G~~ilfRe 570 (591)
T KOG1143|consen 505 LLLFHA-----TYICEGFQATVHIGSVRQTAVITHIDDADCLRTGKWAVVKFCFAYHPEYIREGSPILFRE 570 (591)
T ss_pred hhhhhh-----HhheecceEEEEEcceeeeeeeeeecccccccCCceEEEEEEecCCchhccCCCeeeeec
Confidence 999997 6999999999999999999988877788999999999999995 5999999999999996
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=318.78 Aligned_cols=334 Identities=32% Similarity=0.475 Sum_probs=279.4
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe--------------e----
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE--------------S---- 711 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~--------------~---- 711 (1021)
....+|.+||++||||||..+|++. ++|+|++|.+||+|+.+.+.... .
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGv-------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C 75 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGV-------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKC 75 (415)
T ss_pred cceEeeeeeecccchhhheehhhce-------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCC
Confidence 4578999999999999999999985 37999999999999988864210 0
Q ss_pred --------CCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCeEEEEEeeccccch
Q psy5021 712 --------ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLARQVGVPNIVVFLNKADCVQD 782 (1021)
Q Consensus 712 --------~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~ 782 (1021)
--+.+.|+|+|||+-.+.+|++++.-.|+|+|||+|++. +++||+||+..+...|++++|++.||+|++..
T Consensus 76 ~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~ 155 (415)
T COG5257 76 PNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR 155 (415)
T ss_pred CCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH
Confidence 017889999999999999999999999999999999974 68999999999999999999999999999984
Q ss_pred hhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEe
Q psy5021 783 KELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFS 862 (1021)
Q Consensus 783 ~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~ 862 (1021)
+.. .+..+++++|++.. ..++.|++|+||..+. |++.|+++|.+++|.|.++.++|.+|+|-+.|.
T Consensus 156 E~A-lE~y~qIk~FvkGt--~Ae~aPIIPiSA~~~~-----------NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFD 221 (415)
T COG5257 156 ERA-LENYEQIKEFVKGT--VAENAPIIPISAQHKA-----------NIDALIEAIEKYIPTPERDLDKPPRMYVARSFD 221 (415)
T ss_pred HHH-HHHHHHHHHHhccc--ccCCCceeeehhhhcc-----------CHHHHHHHHHHhCCCCccCCCCCceEEEEeecc
Confidence 433 33446788887754 3567899999999874 899999999999999999999999999999999
Q ss_pred eCCc--------eeEEEEEEEEEEeeCCCEEEEeec------C----CeeEEEEEEEEecccccceeccCceEEEEec--
Q psy5021 863 ISGR--------GTVVTGKIERGIVKNGEEIEIVGY------K----QTIKTTITGIEMFKKTLDEGLAGENVGILLR-- 922 (1021)
Q Consensus 863 v~g~--------G~Vv~G~V~~G~l~~gd~v~i~p~------~----~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~-- 922 (1021)
+..- |-|+.|.+.+|.+++||++.|.|. + +.+.++|.|++..+.++++|.||..+++.-+
T Consensus 222 VNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lD 301 (415)
T COG5257 222 VNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLD 301 (415)
T ss_pred cCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecccC
Confidence 8864 558999999999999999999882 1 2456889999999999999999999999743
Q ss_pred -ccCccCcccceEEeeCCC-ccceeeEEEEEEEeeccCC----CCCccccCCCEEEEEEeeceeeeeeccCCCcccccCC
Q psy5021 923 -SVKREEVERGQVLAKIGS-IKSYNIFECEVYILSKEEG----GRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPG 996 (1021)
Q Consensus 923 -~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~~----~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g 996 (1021)
.+.+.|--.|.|+..++. |+...+|+.+.+.|..-.| ....||+.|-..++.++++..-+.+....+
T Consensus 302 P~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k~------- 374 (415)
T COG5257 302 PTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAKK------- 374 (415)
T ss_pred cchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEecC-------
Confidence 345677888999998886 6788899999999983321 123589999999999999887665543221
Q ss_pred CeEEEEEEEceeeecccCCeEEE
Q psy5021 997 DNIKLNVTLLSSIAIEIGLRFAI 1019 (1021)
Q Consensus 997 ~~~~v~~~~~~pi~~~~~~rf~l 1019 (1021)
| .+++.+-+|+|.+.|.|.++
T Consensus 375 d--~~ev~Lk~Pvcae~g~rvai 395 (415)
T COG5257 375 D--EIEVKLKRPVCAEIGERVAI 395 (415)
T ss_pred c--eEEEEeccceecCCCCEEEE
Confidence 2 35788889999999988776
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=354.45 Aligned_cols=254 Identities=25% Similarity=0.304 Sum_probs=209.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+|+||+|||||||+++|... ++.. ...+|+|......++.|. ++.++|||||
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~--------~v~~----------~e~~GIT~~iga~~v~~~----~~~ItfiDTP 345 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKT--------NVAA----------GEAGGITQHIGAYQVETN----GGKITFLDTP 345 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC--------Cccc----------cccCceeeeccEEEEEEC----CEEEEEEECC
Confidence 46689999999999999999999521 1111 124689988888888888 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeee
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 165 (1021)
||.+|...+.++++.+|++|||||+.+|+..||.++|+.+...++|+|+|+||||+++++++++..++.+ ++.
T Consensus 346 Ghe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~-~~~------ 418 (787)
T PRK05306 346 GHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSE-YGL------ 418 (787)
T ss_pred CCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHH-hcc------
Confidence 9999999999999999999999999999999999999999999999999999999987776655554432 110
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
-.++
T Consensus 419 --------------------------------------------------------------------~~e~-------- 422 (787)
T PRK05306 419 --------------------------------------------------------------------VPEE-------- 422 (787)
T ss_pred --------------------------------------------------------------------cHHH--------
Confidence 0000
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccccc-CCCceEEEEEEEeecCCCceEEEEEEEeeEE
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL-NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFI 324 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~-~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l 324 (1021)
.+..+|++++||++|.|++.|+++|...... .+. .. ++.|+.++||+++.|+++|.++++||++|+|
T Consensus 423 --~g~~vp~vpvSAktG~GI~eLle~I~~~~e~-~~l---------~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtL 490 (787)
T PRK05306 423 --WGGDTIFVPVSAKTGEGIDELLEAILLQAEV-LEL---------KANPDRPARGTVIEAKLDKGRGPVATVLVQNGTL 490 (787)
T ss_pred --hCCCceEEEEeCCCCCCchHHHHhhhhhhhh-hhc---------ccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeE
Confidence 0223689999999999999999999753211 000 01 5789999999999999999999999999999
Q ss_pred ecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcc-ccCCeeccC
Q psy5021 325 KVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKES-STGDTLCSL 381 (1021)
Q Consensus 325 ~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~gdtl~~~ 381 (1021)
+.||.|++.. +..+++.+.+....++++|.|||+|.|.||+++ .+||||+..
T Consensus 491 k~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~ 543 (787)
T PRK05306 491 KVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVV 543 (787)
T ss_pred ecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEc
Confidence 9999999853 467888888888889999999999999999998 999999853
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=330.28 Aligned_cols=251 Identities=25% Similarity=0.322 Sum_probs=198.1
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCce-eEEEEcCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKY-MINIIDTP 85 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~-~i~liDtP 85 (1021)
+.++|+++||+|||||||+++|....- . .+..+|+|.+.....+.|. +. .++|||||
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v--~----------------~~e~~GIT~~ig~~~v~~~----~~~~i~~iDTP 143 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKV--A----------------QGEAGGITQHIGAYHVENE----DGKMITFLDTP 143 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc--c----------------cccCCceeecceEEEEEEC----CCcEEEEEECC
Confidence 557899999999999999999953211 0 1124578888877778886 33 89999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeee
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 165 (1021)
||.+|...+.++++.+|++|+|+|+.+|+..||.+.|+++...++|+++++||+|++++++++....+.+ ++..
T Consensus 144 Ghe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~~----- 217 (587)
T TIGR00487 144 GHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGLV----- 217 (587)
T ss_pred CCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhhh-----
Confidence 9999999999999999999999999999999999999999999999999999999987766554433322 1100
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
.+.
T Consensus 218 ---------------------------------------------------------------------~~~-------- 220 (587)
T TIGR00487 218 ---------------------------------------------------------------------PED-------- 220 (587)
T ss_pred ---------------------------------------------------------------------HHh--------
Confidence 000
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHh--CCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeE
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEY--LPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~--lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~ 323 (1021)
.+.-.|++++||++|.|+++|+++|... ++.+... ++.|+.++|++++.+++.|.+++++|++|+
T Consensus 221 --~~~~~~~v~iSAktGeGI~eLl~~I~~~~~~~~l~~~-----------~~~~~~~~V~ev~~~~g~G~v~~~~V~~Gt 287 (587)
T TIGR00487 221 --WGGDTIFVPVSALTGDGIDELLDMILLQSEVEELKAN-----------PNGQASGVVIEAQLDKGRGPVATVLVQSGT 287 (587)
T ss_pred --cCCCceEEEEECCCCCChHHHHHhhhhhhhhccccCC-----------CCCCceeEEEEEEEeCCCcEEEEEEEEeCE
Confidence 0112468889999999999999999742 2211111 568999999999999999999999999999
Q ss_pred EecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcc-ccCCeecc
Q psy5021 324 IKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKES-STGDTLCS 380 (1021)
Q Consensus 324 l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~gdtl~~ 380 (1021)
|+.||.|...+. ..+|..+ .......+++|.||+++.+.|++++ .+||+|+.
T Consensus 288 L~~Gd~iv~~~~--~~kVr~l---~~~~g~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~ 340 (587)
T TIGR00487 288 LRVGDIVVVGAA--YGRVRAM---IDENGKSVKEAGPSKPVEILGLSDVPAAGDEFIV 340 (587)
T ss_pred EeCCCEEEECCC--ccEEEEE---ECCCCCCCCEECCCCEEEEeCCCCCCCCCCEEEE
Confidence 999999998764 2345444 4444457899999999999999987 89999974
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=334.77 Aligned_cols=258 Identities=25% Similarity=0.280 Sum_probs=206.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+.++|+|+||+|||||||+++|....... +..+|+|.......+.|..++.++.++|||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~------------------~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTP 303 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ------------------KEAGGITQKIGAYEVEFEYKDENQKIVFLDTP 303 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc------------------ccCCccccccceEEEEEEecCCceEEEEEECC
Confidence 477999999999999999999996533321 12367887777667777644456899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeee
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 165 (1021)
||.+|...+.++++.+|++|+|||+.+|++.||.+.|+.+...++|+|+++||+|++..+.+++.+++... +.
T Consensus 304 Ghe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l------ 376 (742)
T CHL00189 304 GHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL------ 376 (742)
T ss_pred cHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc------
Confidence 99999999999999999999999999999999999999999999999999999999876654444333211 00
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
-.++
T Consensus 377 --------------------------------------------------------------------l~e~-------- 380 (742)
T CHL00189 377 --------------------------------------------------------------------IPEK-------- 380 (742)
T ss_pred --------------------------------------------------------------------chHh--------
Confidence 0000
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEe
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIK 325 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~ 325 (1021)
.+..+|++++||++|.|+++|+++|..+.+.+.... .++.|+.++|+++..|++.|.++++||++|+|+
T Consensus 381 --~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~lk~---------~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr 449 (742)
T CHL00189 381 --WGGDTPMIPISASQGTNIDKLLETILLLAEIEDLKA---------DPTQLAQGIILEAHLDKTKGPVATILVQNGTLH 449 (742)
T ss_pred --hCCCceEEEEECCCCCCHHHHHHhhhhhhhhhcccC---------CCCCCceEEEEEEEEcCCCceEEEEEEEcCEEe
Confidence 123578999999999999999999987643211100 056789999999999999999999999999999
Q ss_pred cCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCC-ccccCCeecc
Q psy5021 326 VGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLK-ESSTGDTLCS 380 (1021)
Q Consensus 326 ~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~-~~~~gdtl~~ 380 (1021)
.||.|.+.+ +.++++.+.+....++++|.||++|.+.|++ ...+||+|.-
T Consensus 450 ~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v 500 (742)
T CHL00189 450 IGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQV 500 (742)
T ss_pred cCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEEE
Confidence 999999875 3567788888888899999999999999994 4667887643
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=330.69 Aligned_cols=274 Identities=28% Similarity=0.393 Sum_probs=218.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc-CCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
+....+||+++||+|||||||+++|+...+. .|... ...+.+|+.++|++||+|++.+...+.++ ++.++||
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~----~~~i~~i 80 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAE---RGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE----KRHYAHV 80 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhh---hccccccchhhhcCCHHHHhcCccEEEEeeEecCC----CcEEEEE
Confidence 4567899999999999999999999854332 12211 12346999999999999999987777666 7899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCHHHHHHHHHHHhCCce
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANYNNCIIDIKKKFNCIV 161 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~ 161 (1021)
|||||.+|...+.+++..+|++++|+|+.+|++.|++++|.++...++| +|+++||+|+... ++..+.+.+
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~--~~~~~~i~~------ 152 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDD--EELLELVEM------ 152 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcch--HHHHHHHHH------
Confidence 9999999999999999999999999999999999999999999999999 4678999998531 111111110
Q ss_pred eeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHH
Q psy5021 162 LPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNS 241 (1021)
Q Consensus 162 ~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~ 241 (1021)
++...
T Consensus 153 ---------------------------------------------------------------------------~i~~~ 157 (394)
T PRK12736 153 ---------------------------------------------------------------------------EVREL 157 (394)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 11111
Q ss_pred HHHHHhcCceeEEEeccccCcc--------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCce
Q psy5021 242 IRKLVLKNKIIPIMCGSSLKNK--------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGS 313 (1021)
Q Consensus 242 ~~~~~~~~~~~Pv~~~Sa~~~~--------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~ 313 (1021)
+...-.....+|++++||++|. +++.|++++.+++|.|... .++||+++|++++.+++.|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~-----------~~~p~r~~I~~~~~~~g~G~ 226 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERD-----------TDKPFLMPVEDVFTITGRGT 226 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCC-----------CCCCeEEEEEEEEecCCcEE
Confidence 1111111234789999999983 6899999999999987543 56899999999999999999
Q ss_pred EEEEEEEeeEEecCCEEEeCCC--ceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccCC
Q psy5021 314 LSFIRIYSGFIKVGDLVYNSTK--KVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 314 ~~~~RV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~~ 382 (1021)
+++|||++|+|+.||.|+..+. +...+|++|... ..++++|.|||.+++ .|++ +++.|++||..+
T Consensus 227 Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 227 VVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred EEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 9999999999999999997665 556788888642 467899999999977 6764 488999999865
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=331.48 Aligned_cols=275 Identities=27% Similarity=0.383 Sum_probs=220.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+..+||+++||+|||||||+++|++..+.+.. +.....+.+|+.++|++||+|++++...+.++ +++++|+|
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~--~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----~~~~~~iD 81 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGG--AKAKKYDEIDSAPEEKARGITINTAHVEYETE----NRHYAHVD 81 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCcccc--ccccccccccCChhhhcCCEeEEccEEEEccC----CeEEEEEE
Confidence 4567899999999999999999999988776542 11223457999999999999999988888777 88999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCHHHHHHHHHHHhCCcee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 162 (1021)
||||.+|...+.+++..+|++++|||+.+|++.|+++++..+...++| +|+++||+|+... ++..+.+.+
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~--~~~~~~~~~------- 152 (409)
T CHL00071 82 CPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD--EELLELVEL------- 152 (409)
T ss_pred CCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH--HHHHHHHHH-------
Confidence 999999999999999999999999999999999999999999999999 5678999998632 111111111
Q ss_pred eeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~ 242 (1021)
++...+
T Consensus 153 --------------------------------------------------------------------------~l~~~l 158 (409)
T CHL00071 153 --------------------------------------------------------------------------EVRELL 158 (409)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 111111
Q ss_pred HHHHhcCceeEEEeccccCcc------------------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEE
Q psy5021 243 RKLVLKNKIIPIMCGSSLKNK------------------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFK 304 (1021)
Q Consensus 243 ~~~~~~~~~~Pv~~~Sa~~~~------------------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k 304 (1021)
...-.....+|++++||.+|. |+..|+++|.+++|.|... .+.||+++|++
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~-----------~~~p~r~~I~~ 227 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERD-----------TDKPFLMAIED 227 (409)
T ss_pred HHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCC-----------CCCCEEEEEEE
Confidence 111111234788888888875 4689999999999888543 56899999999
Q ss_pred EeecCCCceEEEEEEEeeEEecCCEEEeCC--CceeeEeceEEEeecCCeeccccccCCCEEEEe--cCC--ccccCCee
Q psy5021 305 IFHDPFLGSLSFIRIYSGFIKVGDLVYNST--KKVKEKIFRILRMFANSKKDINDAHFGDIVVIV--GLK--ESSTGDTL 378 (1021)
Q Consensus 305 ~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl~--~~~~gdtl 378 (1021)
++.+++.|.+++|||++|+++.||.|...+ .+...+|++|... ..++++|.|||++++. |++ +++.||+|
T Consensus 228 v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl 303 (409)
T CHL00071 228 VFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVL 303 (409)
T ss_pred EEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEE
Confidence 999999999999999999999999998643 3456788888653 2478999999999774 654 48899999
Q ss_pred ccCC
Q psy5021 379 CSLS 382 (1021)
Q Consensus 379 ~~~~ 382 (1021)
++.+
T Consensus 304 ~~~~ 307 (409)
T CHL00071 304 AKPG 307 (409)
T ss_pred ecCC
Confidence 9864
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=343.19 Aligned_cols=279 Identities=30% Similarity=0.414 Sum_probs=233.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
+++++||++||||||+++|+.....+.....-..+++|..++|+++|+|+......+++++..++|||||||.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 57899999999999999999754433322111224789999999999999999999999999999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC--ceEEE
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE--NTKIV 810 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ii 810 (1021)
.+++.+|+++|||||.+|+..|++++|..+...++| +|||+||+|+.+ .+++++.+++.+++..++...+ .++++
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~--a~~~~v~~ei~~l~~~~g~~~e~l~~pvl 159 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPS--ARPDEVVDEVFDLFAELGADDEQLDFPIV 159 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC-EEEEEECCCCCC--cCHHHHHHHHHHHHHhhccccccccCcEE
Confidence 999999999999999999999999999999999999 788999999864 2345556677777766655332 46899
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY 890 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~ 890 (1021)
++||++|.+..+.. ....++..|++.+.+.+|.|....+.||+++|++++..++.|+++.|+|.+|+|++||.|.+.|.
T Consensus 160 ~~SA~~g~~~~~~~-~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~ 238 (594)
T TIGR01394 160 YASGRAGWASLDLD-DPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKR 238 (594)
T ss_pred echhhcCcccccCc-ccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecC
Confidence 99999885432221 12247889999999999988777789999999999999999999999999999999999999986
Q ss_pred C-CeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 891 K-QTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 891 ~-~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
+ +..+.+|++|+.+ +.+++.|.|||+|+++ + .+++.+||+||+++
T Consensus 239 ~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--g--l~~i~~Gdtl~~~~ 288 (594)
T TIGR01394 239 DGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--G--LEDINIGETIADPE 288 (594)
T ss_pred CCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--C--CcccCCCCEEeCCC
Confidence 3 3446789999976 5689999999999876 4 46799999999765
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=313.92 Aligned_cols=144 Identities=27% Similarity=0.381 Sum_probs=124.7
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh--------
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD-------- 726 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~-------- 726 (1021)
+++|.+|+|||||+|+|++++..+.+. ..|+|.|.....++++++.+.|+||+|.++
T Consensus 182 aiiGrPNvGKSsLiN~ilgeeR~Iv~~---------------~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~ 246 (444)
T COG1160 182 AIIGRPNVGKSSLINAILGEERVIVSD---------------IAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESV 246 (444)
T ss_pred EEEeCCCCCchHHHHHhccCceEEecC---------------CCCccccceeeeEEECCeEEEEEECCCCCcccccccce
Confidence 466779999999999999987666544 449999999999999999999999999544
Q ss_pred --h-HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHHHHHHHHhhhcccc
Q psy5021 727 --Y-IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 727 --~-~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
| +..+...+..||+++||+||++|...|....+.++...|.+ +|+|+||||+.+ ++...+..+.++...+..++|
T Consensus 247 E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~-~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~ 325 (444)
T COG1160 247 EKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRG-IVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF 325 (444)
T ss_pred EEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCC-eEEEEEccccCCchhhHHHHHHHHHHHHhccccC
Confidence 3 44567778999999999999999999999999999999999 888999999987 346677888888888888887
Q ss_pred CCCceEEEEecccccc
Q psy5021 803 DGENTKIVIGSALLAL 818 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~ 818 (1021)
.+++++||++|.
T Consensus 326 ----a~i~~iSA~~~~ 337 (444)
T COG1160 326 ----APIVFISALTGQ 337 (444)
T ss_pred ----CeEEEEEecCCC
Confidence 689999999884
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=330.52 Aligned_cols=272 Identities=23% Similarity=0.314 Sum_probs=222.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---------cccCCc----ccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIG---------EVHHGT----TITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g---------~~~~~~----~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
....||+++||+|||||||+++|++..|.+...+ ++..++ +++|+.++|++||+|++.+...+.|+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~- 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP- 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC-
Confidence 4568999999999999999999999999877643 223333 47999999999999999999999988
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-------chhHHHHHHHHhhcCCCE-EEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-------QPQTETVWFQSQKYKVPK-MIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-------~~~t~~~~~~~~~~~~p~-iiviNK~D~~~~ 144 (1021)
++.++|||||||.+|..++..++..+|++|+|||+.+|+ +.||+++|..+...++|. |+++||||++..
T Consensus 84 ---~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 ---KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTV 160 (446)
T ss_pred ---CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 899999999999999999999999999999999999997 589999999999999996 579999996543
Q ss_pred C-----HHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcC
Q psy5021 145 N-----YNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSN 219 (1021)
Q Consensus 145 ~-----~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 219 (1021)
+ ++++.+++++.|+.
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~------------------------------------------------------------ 180 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKK------------------------------------------------------------ 180 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHh------------------------------------------------------------
Confidence 2 34444444443321
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------HHHHHHHHhCCCCccccccCC
Q psy5021 220 NDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------FLLNSICEYLPSPYDVDFKNN 287 (1021)
Q Consensus 220 ~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~~ 287 (1021)
.-....-+|++++||.+|.|+. .|+++|... +.|...
T Consensus 181 -------------------------~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~-~~~~~~----- 229 (446)
T PTZ00141 181 -------------------------VGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL-EPPKRP----- 229 (446)
T ss_pred -------------------------cCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC-CCCCcC-----
Confidence 0000113778889999999985 489988654 444332
Q ss_pred ccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe
Q psy5021 288 DYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV 367 (1021)
Q Consensus 288 ~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 367 (1021)
.+.|++++|..++..++.|++..|||.+|+|+.||.|...+.+...+|..|... ..++++|.|||.+++.
T Consensus 230 ------~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~ 299 (446)
T PTZ00141 230 ------VDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH----HEQLAEAVPGDNVGFN 299 (446)
T ss_pred ------CCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec----CcccCEECCCCEEEEE
Confidence 468999999999999999999999999999999999999988888889988643 3679999999999983
Q ss_pred --cCC--ccccCCeeccCC
Q psy5021 368 --GLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 368 --gl~--~~~~gdtl~~~~ 382 (1021)
+++ +++.|++|++..
T Consensus 300 L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 300 VKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred ECCCCHHHcCCceEEecCC
Confidence 432 378999999863
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=297.61 Aligned_cols=339 Identities=28% Similarity=0.450 Sum_probs=269.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---------CeEEEEEec
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---------NKHYAHVDC 721 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---------~~~i~liDt 721 (1021)
.+..|+.||+++|||||..+|.... + ....|+++..++||+|.|.++..+... --+++|+|+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~------S---TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDC 77 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELG------S---TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDC 77 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhc------c---chhhccCCcccccceeEeecceeeecccccccCccccceeEEEeC
Confidence 3688999999999999999997632 1 123599999999999999998876432 246799999
Q ss_pred CChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhH---HHHHHHHHHHhhh
Q psy5021 722 PGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKEL---LDLVEMEIRELLT 798 (1021)
Q Consensus 722 pG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~---~~~~~~~~~~~l~ 798 (1021)
|||...+++.+.++.-.|..++|||+..|.+.||.|++.+...+..+ +|||+||+|......| ++....++++-|+
T Consensus 78 PGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~k-lvvvinkid~lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 78 PGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKK-LVVVINKIDVLPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred CCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccc-eEEEEeccccccchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988777665 8999999998764333 4555566777788
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEE
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGI 878 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~ 878 (1021)
..+|.+ +.||+++||..|. ...+.+.+|.++|.+.+-.|.|+.+.||.|.|+.+|.++|.|+|.+|+|.+|.
T Consensus 157 ~t~f~g-~~PI~~vsa~~G~-------~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~ 228 (522)
T KOG0461|consen 157 STGFDG-NSPIVEVSAADGY-------FKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGV 228 (522)
T ss_pred hcCcCC-CCceeEEecCCCc-------cchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeE
Confidence 888864 6899999999874 34468999999999888889999999999999999999999999999999999
Q ss_pred eeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccC
Q psy5021 879 VKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEE 958 (1021)
Q Consensus 879 l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~ 958 (1021)
++.|+.+.+...+.. -+|||+++++.++..|.+||++++.+...+.+-+.||- ++.++.+.+....-+. +....
T Consensus 229 ~~ln~~iE~PAL~e~--rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRgi-~~~pg~Lk~~~avl~~---vepI~ 302 (522)
T KOG0461|consen 229 LRLNTEIEFPALNEK--RKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERGI-CGPPGTLKSTKAVLAT---VEPIQ 302 (522)
T ss_pred EecCcEEeecccchh--hhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHhccc-cCCCcccceeeeeeEe---ecchH
Confidence 999999999655443 57999999999999999999999999988888899985 3445444443332222 22110
Q ss_pred CCCCccccCCCEEEEEEeeceeeeeeccCC----------------------CcccccCCCeEEEEEEEceeeecccC
Q psy5021 959 GGRHTPFFNGYKPQFYFRTTDVTGICKLPE----------------------NVEMVLPGDNIKLNVTLLSSIAIEIG 1014 (1021)
Q Consensus 959 ~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~----------------------~~~~l~~g~~~~v~~~~~~pi~~~~~ 1014 (1021)
--..+|..-.+.++-++.-.+.+.|.+-. .|..+.+++..-+-+.|++|+.+-++
T Consensus 303 -yfr~~i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~ 379 (522)
T KOG0461|consen 303 -YFRKSINSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEY 379 (522)
T ss_pred -HHhhhhhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccccCccc
Confidence 00125666666666667777777775511 35667778888888889999976544
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=329.22 Aligned_cols=272 Identities=24% Similarity=0.311 Sum_probs=220.2
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc--ccc----CC-------cccccChHHHhhhCceeeeeeeEEEee
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIG--EVH----HG-------TTITDWMQQEQERGITITSASVSIFWE 71 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g--~~~----~~-------~~~~d~~~~e~~rgiTi~~~~~~~~~~ 71 (1021)
...-+||+++||+|||||||+++|++..|.+.+.+ .+. .+ .+++|+.++|++||+|++.+...+.|+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 34568999999999999999999999999876543 111 11 468999999999999999999889888
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-------chhHHHHHHHHhhcCCCE-EEEEeCcCCCC
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-------QPQTETVWFQSQKYKVPK-MIFVNKMDRIG 143 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-------~~~t~~~~~~~~~~~~p~-iiviNK~D~~~ 143 (1021)
++.++|||||||.+|..++..+++.+|+||+|||+.+|. ..||+++|..+...++|. |+++||||+..
T Consensus 84 ----~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 ----KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 159 (447)
T ss_pred ----CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCc
Confidence 899999999999999999999999999999999999983 279999999999999975 77899999862
Q ss_pred C-----CHHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhc
Q psy5021 144 A-----NYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLS 218 (1021)
Q Consensus 144 ~-----~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (1021)
. +++++++++++.+...
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~---------------------------------------------------------- 181 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKV---------------------------------------------------------- 181 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHc----------------------------------------------------------
Confidence 2 2333444444333110
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------HHHHHHHHhCCCCccccccC
Q psy5021 219 NNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------FLLNSICEYLPSPYDVDFKN 286 (1021)
Q Consensus 219 ~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~ 286 (1021)
.+. ..-+|++++||++|.|+. .|+++|.. +|.|...
T Consensus 182 -------------g~~--------------~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~~---- 229 (447)
T PLN00043 182 -------------GYN--------------PDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRP---- 229 (447)
T ss_pred -------------CCC--------------cccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCccc----
Confidence 000 012567888999999874 48888865 5555432
Q ss_pred CccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE
Q psy5021 287 NDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI 366 (1021)
Q Consensus 287 ~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i 366 (1021)
.+.||++.|..++..++.|++..|||.+|+++.||.|...+.+...+|+.|... ..++++|.|||.+++
T Consensus 230 -------~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~----~~~v~~a~aGd~v~i 298 (447)
T PLN00043 230 -------SDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH----HESLQEALPGDNVGF 298 (447)
T ss_pred -------cCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC----CeEeCEecCCCeEEE
Confidence 578999999999999999999999999999999999999988888889988643 568999999999998
Q ss_pred --ecC--CccccCCeeccC
Q psy5021 367 --VGL--KESSTGDTLCSL 381 (1021)
Q Consensus 367 --~gl--~~~~~gdtl~~~ 381 (1021)
.++ +++..|+.|++.
T Consensus 299 ~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 299 NVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred EECCCCHhhCCCccEEccC
Confidence 454 347899999985
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=312.71 Aligned_cols=329 Identities=27% Similarity=0.380 Sum_probs=267.5
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC---eEEEEEecCChhhhHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN---KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~---~~i~liDtpG~~~~~~~ 730 (1021)
.+++.|+|||||||.++|+...+.+..... .-+++|+...||+||+|+.....++.+.+ +.+++||||||-||...
T Consensus 63 fsIIAHVDHGKSTLaDrLLe~tg~i~~~~~-q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 63 FSIIAHVDHGKSTLADRLLELTGTIDNNIG-QEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred eEEEEEecCCcchHHHHHHHHhCCCCCCCc-hhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 467889999999999999987765544332 23478999999999999999998887777 88999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
..+.+..+|+|||||||.+|++.||...+.++.+.|+. +|.|+||+|+... +-+.++.++.+++. +. ..+.+
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~-iIpVlNKIDlp~a--dpe~V~~q~~~lF~---~~--~~~~i 213 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLA-IIPVLNKIDLPSA--DPERVENQLFELFD---IP--PAEVI 213 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCe-EEEeeeccCCCCC--CHHHHHHHHHHHhc---CC--ccceE
Confidence 99999999999999999999999999999999999999 9999999999762 24556666666643 32 34789
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY 890 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~ 890 (1021)
.+||++|+ ++.++|+++.+.+|+|.-..++|||+.+.+.+...+.|.++.++|..|.+++||+|...-+
T Consensus 214 ~vSAK~G~-----------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t 282 (650)
T KOG0462|consen 214 YVSAKTGL-----------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAAT 282 (650)
T ss_pred EEEeccCc-----------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeec
Confidence 99999985 8889999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeeEEEEEEEEeccc-ccceeccCceEEEEecccC-ccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCC
Q psy5021 891 KQTIKTTITGIEMFKK-TLDEGLAGENVGILLRSVK-REEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNG 968 (1021)
Q Consensus 891 ~~~~~~~Vksi~~~~~-~~~~a~~G~~v~l~l~~~~-~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G 968 (1021)
++.+.+++.++...+. ++....+|| ||..+.++. ..+.+.||++++..--.+ + +..|....
T Consensus 283 ~~~yev~~vgvm~p~~~~~~~l~agq-vGyIi~~mr~~~ea~IGdTi~~~~~~~~----------v------~tl~~~~~ 345 (650)
T KOG0462|consen 283 GKSYEVKVVGVMRPEMTPVVELDAGQ-VGYIICNMRNVKEAQIGDTIAHKSVTKA----------V------ETLPGFEP 345 (650)
T ss_pred CcceEeEEeEEeccCceeeeeecccc-cceeEecccccccccccceeeecccCcc----------c------CcCCCCCC
Confidence 8888888888888765 677777777 455556665 677899999986541000 0 11345566
Q ss_pred CEEEEEEeeceeee--eeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEe
Q psy5021 969 YKPQFYFRTTDVTG--ICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIR 1020 (1021)
Q Consensus 969 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr 1020 (1021)
.+|++|++.....+ ...+.+..++|..||. .+.+.-+.+-++..|+|.=+|
T Consensus 346 ~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~-sv~v~~~~s~aLg~gwr~gfl 398 (650)
T KOG0462|consen 346 TKPMVFVGLFPLDGSDYETLRDAIERLVLNDE-SVTVIKESSGALGQGWRLGFL 398 (650)
T ss_pred CcceEEeccccCccchhhhHHHHHHHHhcccc-cceeeecCCcccccceEeecc
Confidence 68889987754433 2345556788888988 567777788888888876443
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=321.22 Aligned_cols=274 Identities=27% Similarity=0.397 Sum_probs=216.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccC-CcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHH-GTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~-~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
+.++.+||+++||+|||||||+++|++... ..|+... +.+.+|+.++|++||+|++.+...+.++ +++++||
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~----~~~~~li 80 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE----NRHYAHV 80 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHH---HhhcccccccccccCCHHHHhcCcceeeEEEEEcCC----CEEEEEE
Confidence 456789999999999999999999985422 2222221 2457999999999999999988777666 7899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCCCCHHHHHHHHHHHhCCce
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNNCIIDIKKKFNCIV 161 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~~~l~~~~ 161 (1021)
|||||.+|...+.+++..+|++++|+|+.+|+..|++++|..+...++|.+ +++||||+...+ +..+.+.+
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~~~~------ 152 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVEM------ 152 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH--HHHHHHHH------
Confidence 999999999999999999999999999999999999999999999999987 579999985321 11111110
Q ss_pred eeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHH
Q psy5021 162 LPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNS 241 (1021)
Q Consensus 162 ~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~ 241 (1021)
++...
T Consensus 153 ---------------------------------------------------------------------------~i~~~ 157 (394)
T TIGR00485 153 ---------------------------------------------------------------------------EVREL 157 (394)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 11111
Q ss_pred HHHHHhcCceeEEEeccccCcc--------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCce
Q psy5021 242 IRKLVLKNKIIPIMCGSSLKNK--------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGS 313 (1021)
Q Consensus 242 ~~~~~~~~~~~Pv~~~Sa~~~~--------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~ 313 (1021)
+...-.....+|++++||+++. ++..|+++|.+++|.|... .++||+++|++++.+++.|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~-----------~~~p~r~~V~~vf~~~g~G~ 226 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERE-----------TDKPFLMPIEDVFSITGRGT 226 (394)
T ss_pred HHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCC-----------CCCCeEEEEEEEEeeCCceE
Confidence 1110011234789999999875 5678999999888877543 46899999999999999999
Q ss_pred EEEEEEEeeEEecCCEEEeCC--CceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccCC
Q psy5021 314 LSFIRIYSGFIKVGDLVYNST--KKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 314 ~~~~RV~sG~l~~gd~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~~ 382 (1021)
++.|||.+|+++.||.|+..+ .++..+|+.|... ..++++|.|||.+++ .|++ +++.|++||+..
T Consensus 227 Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 227 VVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred EEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 999999999999999999765 3566788888653 467899999999987 6663 488999999863
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=301.22 Aligned_cols=273 Identities=27% Similarity=0.351 Sum_probs=222.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc------------ccccc-CCcccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHK------------IGEVH-HGTTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~------------~g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
..--|++++||+|||||||+.+|+|..|.+.. .|.-. .-.+.+|..++|++||+|++.+..+|+.+
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~- 83 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD- 83 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC-
Confidence 44579999999999999999999999998865 22110 12678999999999999999999999988
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCCEEE-EEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVPKMI-FVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~~ 144 (1021)
.+.++++|||||.||..++..+..+||.|||||||..| +..||+++.-.++..++.-++ ++||||....
T Consensus 84 ---k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~w 160 (428)
T COG5256 84 ---KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSW 160 (428)
T ss_pred ---CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccccccc
Confidence 89999999999999999999999999999999999998 999999999999999988655 5999999876
Q ss_pred C---HHHHHHHHHHHh---CCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhc
Q psy5021 145 N---YNNCIIDIKKKF---NCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLS 218 (1021)
Q Consensus 145 ~---~~~~~~~i~~~l---~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (1021)
+ ++++..++...+ |.++
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~--------------------------------------------------------- 183 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNP--------------------------------------------------------- 183 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCc---------------------------------------------------------
Confidence 5 333333333311 1110
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------HHHHHHHHhCCCCccccccC
Q psy5021 219 NNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------FLLNSICEYLPSPYDVDFKN 286 (1021)
Q Consensus 219 ~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~ 286 (1021)
+-+|++++||.+|.|+. .||++|- .+..|...
T Consensus 184 -------------------------------~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~~---- 227 (428)
T COG5256 184 -------------------------------KDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERP---- 227 (428)
T ss_pred -------------------------------cCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCCC----
Confidence 11345555888887763 5777776 55555432
Q ss_pred CccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE
Q psy5021 287 NDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI 366 (1021)
Q Consensus 287 ~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i 366 (1021)
-+.||+..|.+++.....|.+..+||.+|.|++||+|+..+.+....++++..- .++++.+.+||.+.+
T Consensus 228 -------~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~----~~~~~~a~~GD~i~~ 296 (428)
T COG5256 228 -------LDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH----HEEISQAEPGDNVGF 296 (428)
T ss_pred -------CCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec----ccccccCCCCCeEEE
Confidence 579999999999998888999999999999999999999998888888888543 678999999999998
Q ss_pred --ecCC--ccccCCeeccCCcccc
Q psy5021 367 --VGLK--ESSTGDTLCSLSENIQ 386 (1021)
Q Consensus 367 --~gl~--~~~~gdtl~~~~~~~~ 386 (1021)
.|++ +++.||.+++.+.++.
T Consensus 297 ~vrgv~~~dI~~Gdv~~~~~n~~t 320 (428)
T COG5256 297 NVRGVEKNDIRRGDVIGHSDNPPT 320 (428)
T ss_pred EecCCchhccCCccEeccCCCCcc
Confidence 4544 4999999999876654
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=320.53 Aligned_cols=273 Identities=26% Similarity=0.366 Sum_probs=218.9
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
.....+||+++||+|||||||+++|++..+.+.. ....+...+|+.++|++||+|++.....+.++ ++.++|||
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~--~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~----~~~i~liD 150 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGG--SAPKKYDEIDAAPEERARGITINTATVEYETE----NRHYAHVD 150 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhcc--ccccccccccCChhHHhCCeeEEEEEEEEecC----CcEEEEEE
Confidence 3566899999999999999999999988876643 23445678999999999999999998888887 88999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC--HHHHHHHHHHHhCCc
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN--YNNCIIDIKKKFNCI 160 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~--~~~~~~~i~~~l~~~ 160 (1021)
||||.+|..++.+++..+|++++|||+.+|+..||+++|..+...++| +++++||||+...+ ++...+++++.|.
T Consensus 151 tPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~-- 228 (478)
T PLN03126 151 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLS-- 228 (478)
T ss_pred CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999 56789999986421 1111122222221
Q ss_pred eeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHH
Q psy5021 161 VLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKN 240 (1021)
Q Consensus 161 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~ 240 (1021)
T Consensus 229 -------------------------------------------------------------------------------- 228 (478)
T PLN03126 229 -------------------------------------------------------------------------------- 228 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceeEEEeccccCcc------------------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEE
Q psy5021 241 SIRKLVLKNKIIPIMCGSSLKNK------------------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLV 302 (1021)
Q Consensus 241 ~~~~~~~~~~~~Pv~~~Sa~~~~------------------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V 302 (1021)
+.-.....+|++++||.++. ++..|++.|.++.|.|... .+.||.++|
T Consensus 229 ---~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~-----------~~~p~r~~I 294 (478)
T PLN03126 229 ---SYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQ-----------TDLPFLLAV 294 (478)
T ss_pred ---hcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCc-----------cccceeeEE
Confidence 10001123566667776652 2568999999887766542 468999999
Q ss_pred EEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc--eeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCC
Q psy5021 303 FKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK--VKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGD 376 (1021)
Q Consensus 303 ~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gd 376 (1021)
..+|..+++|.++.|+|.+|+++.||.|+..+.+ ...+|+.|... ..++++|.|||.+++ .|++ +++.|+
T Consensus 295 ~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~ 370 (478)
T PLN03126 295 EDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGM 370 (478)
T ss_pred EEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCcc
Confidence 9999999999999999999999999999987654 45678887543 467999999999998 5654 388999
Q ss_pred eeccCC
Q psy5021 377 TLCSLS 382 (1021)
Q Consensus 377 tl~~~~ 382 (1021)
+|++.+
T Consensus 371 VL~~~~ 376 (478)
T PLN03126 371 VLAKPG 376 (478)
T ss_pred EEecCC
Confidence 999864
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=316.11 Aligned_cols=272 Identities=27% Similarity=0.386 Sum_probs=216.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc-cCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV-HHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
+....+||+++||+|||||||+++|++.... .|.. ....+.+|+.++|++||+|++.+...+.++ +++++|+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----~~~i~~i 80 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAK---KGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----KRHYAHV 80 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhh---ccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----CeEEEEE
Confidence 4567899999999999999999999874321 1111 112347899999999999999987777666 7899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCCCC--HHHHHHHHHHHhCC
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIGAN--YNNCIIDIKKKFNC 159 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~~~--~~~~~~~i~~~l~~ 159 (1021)
|||||.+|...+.+++..+|++++|+|+.+|++.|++++|..+...++|.+ +++||+|+...+ ++....++++.|
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l-- 158 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL-- 158 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999987 579999986311 111111222221
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIK 239 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~ 239 (1021)
T Consensus 159 -------------------------------------------------------------------------------- 158 (396)
T PRK00049 159 -------------------------------------------------------------------------------- 158 (396)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCceeEEEeccccCcc----------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecC
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNK----------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDP 309 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~----------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 309 (1021)
...-.....+|++++||+++. |+..|+++|.+++|.|... .++||.++|..++..+
T Consensus 159 ---~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~-----------~~~p~r~~I~~~f~v~ 224 (396)
T PRK00049 159 ---SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERA-----------IDKPFLMPIEDVFSIS 224 (396)
T ss_pred ---HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCC-----------CCCCeEEEEEEEEeeC
Confidence 100001124678888998864 6789999999999877543 5789999999999999
Q ss_pred CCceEEEEEEEeeEEecCCEEEeCCC--ceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccCC
Q psy5021 310 FLGSLSFIRIYSGFIKVGDLVYNSTK--KVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 310 ~~g~~~~~RV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~~ 382 (1021)
+.|.++.|||.+|++++||.|...+. ++..+|+.|... ..++++|.|||.+++ .|++ ++..|++||+..
T Consensus 225 g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 225 GRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred CceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 99999999999999999999987654 566788888543 367999999999998 5663 488999999964
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=315.84 Aligned_cols=272 Identities=26% Similarity=0.376 Sum_probs=217.0
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc-CCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
+.....||+++||+|||||||+++|++.... .|... ...+.+|+.++|++||+|++.+...+.++ +.+++||
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~----~~~i~~i 80 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAK---KGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA----NRHYAHV 80 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhh---cCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----CcEEEEE
Confidence 5667899999999999999999999874432 22111 12357899999999999999987777776 7899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEE-EEeCcCCCCCC--HHHHHHHHHHHhCC
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMI-FVNKMDRIGAN--YNNCIIDIKKKFNC 159 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~~~--~~~~~~~i~~~l~~ 159 (1021)
|||||.+|...+.+++..+|++++|+|+.+|+..|+++++..+...++|.++ ++||+|+...+ ++....++++.+
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l-- 158 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL-- 158 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999999999999999774 79999985311 011111111111
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIK 239 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~ 239 (1021)
T Consensus 159 -------------------------------------------------------------------------------- 158 (396)
T PRK12735 159 -------------------------------------------------------------------------------- 158 (396)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCceeEEEeccccCc----------ccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecC
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKN----------KGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDP 309 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~----------~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 309 (1021)
...-..+..+|++++||++| .|+..|+++|.+.+|.|... .++||+++|..++..+
T Consensus 159 ---~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~-----------~~~p~r~~I~~~f~v~ 224 (396)
T PRK12735 159 ---SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERA-----------IDKPFLMPIEDVFSIS 224 (396)
T ss_pred ---HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCcc-----------CCCCeEEEEEEEEecC
Confidence 10000112478889999998 47899999999999977543 5789999999999999
Q ss_pred CCceEEEEEEEeeEEecCCEEEeCCC--ceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccCC
Q psy5021 310 FLGSLSFIRIYSGFIKVGDLVYNSTK--KVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 310 ~~g~~~~~RV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~~ 382 (1021)
+.|.++.|||.+|+++.||.|+..+. ++..+|..|... ..++++|.|||.+++ .|++ +++.|++||+.+
T Consensus 225 g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 225 GRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred CceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 99999999999999999999997654 456778888642 468999999999998 5664 488999999864
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=313.26 Aligned_cols=273 Identities=27% Similarity=0.410 Sum_probs=212.7
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCc-ccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGT-TITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~-~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
.....+||+++||+|||||||+++|.... ...|+..... ..+|+.++|++||+|++.+...+.++ +++++|+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~----~~~i~~i 129 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA----KRHYAHV 129 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHH---HHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC----CeEEEEE
Confidence 45678999999999999999999996432 2223222222 26899999999999999988888777 8899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCCCCCCHHHHHHHHHHHhCCce
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDRIGANYNNCIIDIKKKFNCIV 161 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~~~l~~~~ 161 (1021)
|||||.+|...+.+++..+|++++|||+.+|+..|+++++..+...++|. |+++||||+... ++..+.+.+.+
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~--~~~~~~i~~~i---- 203 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDD--EELLELVEMEL---- 203 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCH--HHHHHHHHHHH----
Confidence 99999999999999999999999999999999999999999999999995 678999998531 11111111100
Q ss_pred eeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHH
Q psy5021 162 LPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNS 241 (1021)
Q Consensus 162 ~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~ 241 (1021)
...
T Consensus 204 -----------------------------------------------------------------------------~~~ 206 (447)
T PLN03127 204 -----------------------------------------------------------------------------REL 206 (447)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHHHhcCceeEEEecccc---Cccc-------HHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCC
Q psy5021 242 IRKLVLKNKIIPIMCGSSL---KNKG-------IEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFL 311 (1021)
Q Consensus 242 ~~~~~~~~~~~Pv~~~Sa~---~~~G-------i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~ 311 (1021)
+...-.....+|++++||. ++.| +..|+++|.+++|.|... .++||+++|..++..++.
T Consensus 207 l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~-----------~~~pfr~~I~~vf~v~g~ 275 (447)
T PLN03127 207 LSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRV-----------LDKPFLMPIEDVFSIQGR 275 (447)
T ss_pred HHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcc-----------cccceEeeEEEEEEcCCc
Confidence 0000001224677777776 4444 789999999999987543 468999999999999999
Q ss_pred ceEEEEEEEeeEEecCCEEEeCCC----ceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccC
Q psy5021 312 GSLSFIRIYSGFIKVGDLVYNSTK----KVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSL 381 (1021)
Q Consensus 312 g~~~~~RV~sG~l~~gd~v~~~~~----~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~ 381 (1021)
|.++.|||.+|+++.||.|+..+. +...+|+.|... ..++++|.|||.+++ .|++ +++.|++||+.
T Consensus 276 GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 276 GTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred eEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 999999999999999999987643 356788888544 346899999999998 5664 48899999986
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=319.37 Aligned_cols=273 Identities=25% Similarity=0.368 Sum_probs=221.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc------------ccc-cCCcccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI------------GEV-HHGTTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~------------g~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
+...||+++||+|||||||+++|++..+.+... |.. .+..+++|+.++|++||+|++.....+.++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~- 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD- 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence 567899999999999999999999999988653 322 223578999999999999999999999998
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCC--CCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCH---
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASS--GIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANY--- 146 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~--g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~--- 146 (1021)
++.++|||||||.+|...+..+++.+|++|+|+|+++ ++..++.+++..+...++| +++++||+|+...+.
T Consensus 83 ---~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 83 ---KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred ---CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHH
Confidence 8999999999999999999999999999999999999 9999999999998888874 788999999975321
Q ss_pred HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHH
Q psy5021 147 NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLE 226 (1021)
Q Consensus 147 ~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e 226 (1021)
+...+++++.+.
T Consensus 160 ~~~~~~i~~~l~-------------------------------------------------------------------- 171 (425)
T PRK12317 160 EEVKEEVSKLLK-------------------------------------------------------------------- 171 (425)
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 122222222210
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH------------HHHHHHHhCCCCccccccCCccccccC
Q psy5021 227 KYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF------------LLNSICEYLPSPYDVDFKNNDYNINLN 294 (1021)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~~~ 294 (1021)
..-.....+|++++||++|.|+++ |+++|. .+|.|... .
T Consensus 172 -----------------~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~-~~~~~~~~-----------~ 222 (425)
T PRK12317 172 -----------------MVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALD-NLKPPEKP-----------T 222 (425)
T ss_pred -----------------hhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHh-cCCCCccc-----------c
Confidence 000001135788999999999974 888875 46666432 5
Q ss_pred CCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--
Q psy5021 295 SNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK-- 370 (1021)
Q Consensus 295 ~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-- 370 (1021)
+.||.++|..++..++.|.+..|||.+|+++.||.|...+.+...+|+.|... ..+++.|.|||.+++ .|++
T Consensus 223 ~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~~ 298 (425)
T PRK12317 223 DKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH----HEELPQAEPGDNIGFNVRGVGKK 298 (425)
T ss_pred CCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC----CcccCEECCCCeEEEEECCCCHH
Confidence 78999999999999999999999999999999999999988888889988643 467999999999987 4554
Q ss_pred ccccCCeeccCCc
Q psy5021 371 ESSTGDTLCSLSE 383 (1021)
Q Consensus 371 ~~~~gdtl~~~~~ 383 (1021)
++..|++|++...
T Consensus 299 ~i~rG~vl~~~~~ 311 (425)
T PRK12317 299 DIKRGDVCGHPDN 311 (425)
T ss_pred HccCccEecCCCC
Confidence 4789999998653
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=312.65 Aligned_cols=270 Identities=24% Similarity=0.253 Sum_probs=208.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcc--ccccc-----CC--------cccccChHHHhhhCceeeeeeeEEEeeccc
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHK--IGEVH-----HG--------TTITDWMQQEQERGITITSASVSIFWEVNK 74 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~--~g~~~-----~~--------~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~ 74 (1021)
||+++||+|||||||+++|++.+|.+.. .+.++ .| .+++|+.++|++||+|++.....+.|+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 7999999999999999999999998876 33332 22 358999999999999999999999998
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCHHHHHHHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANYNNCIIDI 153 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i 153 (1021)
+++++|||||||.+|..++..++..+|++|+|||+.+|++.||+++|..+...++| +++|+||||+...+ .+.++++
T Consensus 79 -~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i 156 (406)
T TIGR02034 79 -KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENI 156 (406)
T ss_pred -CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHH
Confidence 88999999999999999999999999999999999999999999999999988886 67799999986433 1222222
Q ss_pred HHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCC
Q psy5021 154 KKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNY 233 (1021)
Q Consensus 154 ~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~ 233 (1021)
.+.+.
T Consensus 157 ~~~~~--------------------------------------------------------------------------- 161 (406)
T TIGR02034 157 KKDYL--------------------------------------------------------------------------- 161 (406)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 21110
Q ss_pred CHHHHHHHHHHHHhcCceeEEEeccccCcccHHH------------HHHHHHHhCCCCccccccCCccccccCCCceEEE
Q psy5021 234 SINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF------------LLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSL 301 (1021)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~ 301 (1021)
.-+ +.+. ...+|++++||++|.|+.. |+++|.. +|.|... .+.|+.+.
T Consensus 162 ------~~~-~~~~-~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~~-----------~~~p~r~~ 221 (406)
T TIGR02034 162 ------AFA-EQLG-FRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERDA-----------QDLPLRFP 221 (406)
T ss_pred ------HHH-HHcC-CCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCCc-----------CCCCcccc
Confidence 000 0000 0135678889999999864 6777754 4555332 46788887
Q ss_pred EEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEec--CCccccCCeec
Q psy5021 302 VFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVG--LKESSTGDTLC 379 (1021)
Q Consensus 302 V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~g--l~~~~~gdtl~ 379 (1021)
|..++.....+.-..|+|.+|+|+.||.|...+.+...+|+.|... ..++++|.|||.+++.- ..++..|++||
T Consensus 222 i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~ 297 (406)
T TIGR02034 222 VQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTF----DGDLEQARAGQAVTLTLDDEIDISRGDLLA 297 (406)
T ss_pred eEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEEC----CcccCEeCCCCEEEEEECCccccCCccEEE
Confidence 7776643322222569999999999999999888888899998643 34689999999999953 34588999999
Q ss_pred cCCc
Q psy5021 380 SLSE 383 (1021)
Q Consensus 380 ~~~~ 383 (1021)
++..
T Consensus 298 ~~~~ 301 (406)
T TIGR02034 298 AADS 301 (406)
T ss_pred cCCC
Confidence 8754
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=319.28 Aligned_cols=280 Identities=29% Similarity=0.362 Sum_probs=230.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
-+++++||++||||||+++|+..............+.+|..+.|+++|+|+......+++++..+++||||||.+|...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 36799999999999999999975433322211122678999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC--CceEE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG--ENTKI 809 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~i 809 (1021)
..+++.+|++|+|||+.+|+..|++.+|..+...++| .||++||+|+.+ .+++.+.+++..++..++... ..+|+
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip-~IVviNKiD~~~--a~~~~vl~ei~~l~~~l~~~~~~~~~PV 162 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK-PIVVINKVDRPG--ARPDWVVDQVFDLFVNLDATDEQLDFPI 162 (607)
T ss_pred HHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCC-EEEEEECcCCCC--CchhHHHHHHHHHHhccCccccccCCCE
Confidence 9999999999999999999999999999999999999 678999999864 234555566666665544422 24789
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEee
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVG 889 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p 889 (1021)
+++||++|+++.+... ...++..|++.+.+.+|.|....+.||+++|++++..++.|+++.|+|.+|+|++||.|.+.+
T Consensus 163 i~~SA~~G~~~~~~~~-~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~ 241 (607)
T PRK10218 163 VYASALNGIAGLDHED-MAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIID 241 (607)
T ss_pred EEeEhhcCcccCCccc-cccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEec
Confidence 9999999865433221 123678899999999998887788999999999999999999999999999999999999987
Q ss_pred c-CCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 890 Y-KQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 890 ~-~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
. ++..+.+|.+|... +.++++|.|||+|+++ + .+++..||+||+++
T Consensus 242 ~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--g--l~~~~~GdTl~~~~ 292 (607)
T PRK10218 242 SEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAIT--G--LGELNISDTVCDTQ 292 (607)
T ss_pred CCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEE--C--ccccccCcEEecCC
Confidence 5 44345778888755 5689999999999865 3 56789999998765
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=293.41 Aligned_cols=323 Identities=28% Similarity=0.395 Sum_probs=260.3
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----CeEEEEEecCChhhhHH
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----NKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----~~~i~liDtpG~~~~~~ 729 (1021)
.++.|.+||||||.++|+.....+.....+ .+++|....||+||+|+......+.+. .+.++|||||||-+|.-
T Consensus 13 sIIAHIDHGKSTLaDRlle~t~~~~~Rem~-~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsY 91 (603)
T COG0481 13 SIIAHIDHGKSTLADRLLELTGGLSEREMR-AQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSY 91 (603)
T ss_pred EEEEEecCCcchHHHHHHHHhcCcChHHHH-HHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEE
Confidence 467899999999999999866555443332 346899999999999999988776553 36789999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
..-+.+..|.+++|||||+.|+..||.....++..++.. +|-|+||+||...+ .+.++.++++. +|++. ...
T Consensus 92 EVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~Le-IiPViNKIDLP~Ad--pervk~eIe~~---iGid~--~da 163 (603)
T COG0481 92 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPAAD--PERVKQEIEDI---IGIDA--SDA 163 (603)
T ss_pred EehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcE-EEEeeecccCCCCC--HHHHHHHHHHH---hCCCc--chh
Confidence 988999999999999999999999999999999999999 99999999998632 34566677666 45543 346
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEee
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVG 889 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p 889 (1021)
+.+||++|. |++++|++|.+.+|.|+...+.|++..|.+.|...+.|.|+.-+|..|++++||++.++.
T Consensus 164 v~~SAKtG~-----------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~ 232 (603)
T COG0481 164 VLVSAKTGI-----------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMS 232 (603)
T ss_pred eeEecccCC-----------CHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEe
Confidence 889999985 999999999999999998999999999999999999999999999999999999999998
Q ss_pred cCCeeEEEEEEEEeccc-ccceeccCceEEEEecccC-ccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccC
Q psy5021 890 YKQTIKTTITGIEMFKK-TLDEGLAGENVGILLRSVK-REEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFN 967 (1021)
Q Consensus 890 ~~~~~~~~Vksi~~~~~-~~~~a~~G~~v~l~l~~~~-~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~ 967 (1021)
.++...+.-.++..+.. ..+...+|+ ||+...+++ ..+.+.||+++....|.. + +.|=+.
T Consensus 233 tg~~y~V~evGvftP~~~~~~~L~aGe-VG~~~a~iK~v~d~~VGDTiT~~~~p~~-------------e----~LpGfk 294 (603)
T COG0481 233 TGKEYEVDEVGIFTPKMVKVDELKAGE-VGYIIAGIKDVRDARVGDTITLASNPAT-------------E----PLPGFK 294 (603)
T ss_pred cCCEEEEEEEeeccCCccccccccCCc-eeEEEEeeeecccCcccceEeccCCCcc-------------c----cCCCCC
Confidence 88887777777777754 667888888 666666664 578999999985433211 0 012122
Q ss_pred CCEEEEEEeeceeee--eeccCCCcccccCCCeEEEEEEEceeeecccCCe
Q psy5021 968 GYKPQFYFRTTDVTG--ICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLR 1016 (1021)
Q Consensus 968 G~~~~~~~~~~~~~~--~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~r 1016 (1021)
--+|++||+--.+.+ .-.+.+..+.|..||.+ ..++.+.+.++..|.|
T Consensus 295 ~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDas-l~~E~EtS~ALGfGfR 344 (603)
T COG0481 295 EVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDAS-LTYEPETSQALGFGFR 344 (603)
T ss_pred cCCceEEEeecccChhHHHHHHHHHHhcccccce-eeeccccchhccCcee
Confidence 225889988644332 12345567889999995 4999999999998876
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=312.17 Aligned_cols=277 Identities=25% Similarity=0.271 Sum_probs=211.1
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc--ccccc-----CC--------cccccChHHHhhhCceeeeeeeEEE
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHK--IGEVH-----HG--------TTITDWMQQEQERGITITSASVSIF 69 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~--~g~~~-----~~--------~~~~d~~~~e~~rgiTi~~~~~~~~ 69 (1021)
.....||+|+||+|||||||+++|++.+|.+.. .+.+. .| .+++|+.++|++||+|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 345689999999999999999999999998875 22221 22 4589999999999999999998888
Q ss_pred eecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCC-CEEEEEeCcCCCCCCHHH
Q psy5021 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV-PKMIFVNKMDRIGANYNN 148 (1021)
Q Consensus 70 ~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~-p~iiviNK~D~~~~~~~~ 148 (1021)
|+ +++++|||||||.+|..++..++..+|++|+|||+.+|+..||++++..+...++ |+|+++||||+...+ .+
T Consensus 104 ~~----~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~-~~ 178 (474)
T PRK05124 104 TE----KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-EE 178 (474)
T ss_pred cC----CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccch-hH
Confidence 88 8899999999999999999999999999999999999999999999999988886 467799999986433 11
Q ss_pred HHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy5021 149 CIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKY 228 (1021)
Q Consensus 149 ~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~ 228 (1021)
.+.++.+.+.
T Consensus 179 ~~~~i~~~l~---------------------------------------------------------------------- 188 (474)
T PRK05124 179 VFERIREDYL---------------------------------------------------------------------- 188 (474)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 2222221110
Q ss_pred HcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH------------HHHHHHHhCCCCccccccCCccccccCCC
Q psy5021 229 INNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF------------LLNSICEYLPSPYDVDFKNNDYNINLNSN 296 (1021)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~ 296 (1021)
.-+ +.+......|++++||++|.|+.. |+++| +.+|.|... .+.
T Consensus 189 -----------~~~-~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~~i~~~~~~-----------~~~ 244 (474)
T PRK05124 189 -----------TFA-EQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQRVV-----------DAQ 244 (474)
T ss_pred -----------HHH-HhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHH-hhcCCCCCC-----------CCC
Confidence 000 000001236788889999999854 56644 456655432 467
Q ss_pred ceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEec--CCcccc
Q psy5021 297 KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVG--LKESST 374 (1021)
Q Consensus 297 p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~g--l~~~~~ 374 (1021)
|+++.|..++...+...-..|||.+|+|+.||+|+..+.+...+|++|... ..+++.|.|||.+++.. ..++..
T Consensus 245 p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aG~~V~l~L~~~~~i~r 320 (474)
T PRK05124 245 PFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTF----DGDLEEAFAGEAITLVLEDEIDISR 320 (474)
T ss_pred CceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEc----CccccCcCCCCEEEEEeCCccccCC
Confidence 999988887653331122459999999999999999988888899998744 23689999999999953 335889
Q ss_pred CCeeccCCcc
Q psy5021 375 GDTLCSLSEN 384 (1021)
Q Consensus 375 gdtl~~~~~~ 384 (1021)
|++||+...+
T Consensus 321 G~VL~~~~~~ 330 (474)
T PRK05124 321 GDLLVAADEA 330 (474)
T ss_pred ccEEECCCCC
Confidence 9999986533
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=315.40 Aligned_cols=264 Identities=27% Similarity=0.425 Sum_probs=219.8
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----CeEEEEEecCChhhh
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----NKHYAHVDCPGHADY 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----~~~i~liDtpG~~~~ 727 (1021)
+.+++||++||||||+++|+.....+.... ...+++|..+.|+++|+|++.....+.+. ...++|||||||.+|
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 578999999999999999998655444322 23457899999999999999888777553 267899999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...+..+++.+|++|+|+|+++|...|+.++|..+...++| +|+|+||+|+.+.. .+...+++.+. +++. ..
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~--~~~~~~el~~~---lg~~--~~ 155 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD--PERVKKEIEEV---IGLD--AS 155 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC--HHHHHHHHHHH---hCCC--cc
Confidence 99999999999999999999999999999999888888998 89999999986421 22233344433 3332 13
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEE
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEI 887 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i 887 (1021)
.++++||++|. |+++|+++|.+.+|.|.+..+.|++++|.+++..++.|+++.|+|.+|+|++||+|.+
T Consensus 156 ~vi~vSAktG~-----------GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~ 224 (595)
T TIGR01393 156 EAILASAKTGI-----------GIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRF 224 (595)
T ss_pred eEEEeeccCCC-----------CHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEE
Confidence 58999999884 8999999999989988888899999999999999999999999999999999999999
Q ss_pred eecCCeeEEEEEEEEecc---cccceeccCceEEEEecccC-ccCcccceEEeeCC
Q psy5021 888 VGYKQTIKTTITGIEMFK---KTLDEGLAGENVGILLRSVK-REEVERGQVLAKIG 939 (1021)
Q Consensus 888 ~p~~~~~~~~Vksi~~~~---~~~~~a~~G~~v~l~l~~~~-~~~i~~G~vl~~~~ 939 (1021)
.|.+.. .+|++|..++ .+++.+.||| +++.+++++ ..+++.||+|++.+
T Consensus 225 ~~~~~~--~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~~~ 277 (595)
T TIGR01393 225 MSTGKE--YEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTITHVK 277 (595)
T ss_pred ecCCCe--eEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEECCC
Confidence 987654 6788888766 5789999999 788878774 47899999998764
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=285.06 Aligned_cols=281 Identities=30% Similarity=0.384 Sum_probs=235.1
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.++++.|++||||||++.|++..........-.-++||....|++||+||-.+...+.|++..++++|||||.+|-....
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 56788999999999999999876544444333445799999999999999999999999999999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC--ceEEE
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE--NTKIV 810 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ii 810 (1021)
+.++..|.++|+|||.+|+.+||+-.+..+.++|.+ -|||+||+|... .+-+++..+...++-.++-+.+ .+|++
T Consensus 87 Rvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~-PIVVvNKiDrp~--Arp~~Vvd~vfDLf~~L~A~deQLdFPiv 163 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLK-PIVVINKIDRPD--ARPDEVVDEVFDLFVELGATDEQLDFPIV 163 (603)
T ss_pred hhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCC-cEEEEeCCCCCC--CCHHHHHHHHHHHHHHhCCChhhCCCcEE
Confidence 999999999999999999999999999999999999 466889999875 3345566666666666654433 46899
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEee-
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVG- 889 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p- 889 (1021)
+-||..|+...+... ...+...|++.|.+++|.|.-..+.||+|.|...-+.+..|.+..|+|.+|++++||.|.+.-
T Consensus 164 YAS~~~G~a~~~~~~-~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~ 242 (603)
T COG1217 164 YASARNGTASLDPED-EADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKS 242 (603)
T ss_pred EeeccCceeccCccc-cccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcC
Confidence 999998865543332 223578899999999999998889999999999999999999999999999999999998863
Q ss_pred cCCeeEEEEEEEEecc----cccceeccCceEEEEecccCccCcccceEEeeCCCc
Q psy5021 890 YKQTIKTTITGIEMFK----KTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSI 941 (1021)
Q Consensus 890 ~~~~~~~~Vksi~~~~----~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~ 941 (1021)
.+.....+|..+..+. .++++|.|||.|+++ | .+++..|+.+|+++.+
T Consensus 243 ~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaia--G--~~~~~igdTi~d~~~~ 294 (603)
T COG1217 243 DGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIA--G--LEDINIGDTICDPDNP 294 (603)
T ss_pred CCcEEeeEEEeeeeccceeeeecccccccCEEEEc--C--cccccccccccCCCCc
Confidence 3445567888887764 589999999999776 4 5678899999987643
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=308.19 Aligned_cols=273 Identities=24% Similarity=0.368 Sum_probs=217.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc-------cccCC------cccccChHHHhhhCceeeeeeeEEEee
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIG-------EVHHG------TTITDWMQQEQERGITITSASVSIFWE 71 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g-------~~~~~------~~~~d~~~~e~~rgiTi~~~~~~~~~~ 71 (1021)
....+||+++||+|||||||+++|++..|.+...+ ....| .+.+|+.++|++||+|++.....+.+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45679999999999999999999999988775321 00111 357999999999999999999999888
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC---CchhHHHHHHHHhhcCC-CEEEEEeCcCCCCCCHH
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG---IQPQTETVWFQSQKYKV-PKMIFVNKMDRIGANYN 147 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g---~~~~t~~~~~~~~~~~~-p~iiviNK~D~~~~~~~ 147 (1021)
++.++|||||||.+|...+..+++.+|++++|+|++++ ...++.+++..+...++ |+++++||+|+...+.+
T Consensus 84 ----~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 84 ----KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred ----CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHH
Confidence 89999999999999999999999999999999999999 78888888877777775 57788999999643321
Q ss_pred ---HHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHH
Q psy5021 148 ---NCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFF 224 (1021)
Q Consensus 148 ---~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l 224 (1021)
...+++++.+
T Consensus 160 ~~~~~~~ei~~~~------------------------------------------------------------------- 172 (426)
T TIGR00483 160 EFEAIKKEVSNLI------------------------------------------------------------------- 172 (426)
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 1112221111
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH------------HHHHHHHhCCCCccccccCCccccc
Q psy5021 225 LEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF------------LLNSICEYLPSPYDVDFKNNDYNIN 292 (1021)
Q Consensus 225 ~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~ 292 (1021)
...-.....+|++.+||++|.|+.+ |+++|.. +|.|...
T Consensus 173 ------------------~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~~---------- 223 (426)
T TIGR00483 173 ------------------KKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEKP---------- 223 (426)
T ss_pred ------------------HHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCCc----------
Confidence 0000011236788899999999874 9999854 5555432
Q ss_pred cCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecC-
Q psy5021 293 LNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGL- 369 (1021)
Q Consensus 293 ~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl- 369 (1021)
.+.||.++|..++..++.|.++.|||.+|+++.||.|...+.+...+|+.|... ..++++|.|||.+++ .++
T Consensus 224 -~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~l~~i~ 298 (426)
T TIGR00483 224 -TDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMH----HEQIEQAEPGDNIGFNVRGVS 298 (426)
T ss_pred -cCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEEC----CcccCEEcCCCEEEEEECCCC
Confidence 468999999999999999999999999999999999999888888889988643 357899999999998 454
Q ss_pred -CccccCCeeccCC
Q psy5021 370 -KESSTGDTLCSLS 382 (1021)
Q Consensus 370 -~~~~~gdtl~~~~ 382 (1021)
++++.|++|++..
T Consensus 299 ~~~i~rG~vl~~~~ 312 (426)
T TIGR00483 299 KKDIRRGDVCGHPD 312 (426)
T ss_pred hhhcccceEEecCC
Confidence 3488999998864
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-31 Score=313.57 Aligned_cols=264 Identities=28% Similarity=0.431 Sum_probs=219.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----CeEEEEEecCChhhh
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----NKHYAHVDCPGHADY 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----~~~i~liDtpG~~~~ 727 (1021)
+.+++||.+||||||+++|+.....+..... ..+++|..+.|+++|+|+......+.+. +..++|||||||.+|
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~-~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREM-KAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCccccc-ccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 6788999999999999999876544433222 3457899999999999999888777653 567899999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...+..+++.+|++|+|||+++|...|+.++|.++...++| +|+|+||+|+.+.. .+...+++.+. +++. ..
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~--~~~v~~ei~~~---lg~~--~~ 159 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAAD--PERVKQEIEDV---IGID--AS 159 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCccc--HHHHHHHHHHH---hCCC--cc
Confidence 99999999999999999999999999999999998888999 89999999986421 23333444443 3332 13
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEE
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEI 887 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i 887 (1021)
.++++||++|. |+++|+++|.+.+|.|....+.|+++.|.+++..++.|+++.|+|.+|+|++||+|.+
T Consensus 160 ~vi~iSAktG~-----------GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~ 228 (600)
T PRK05433 160 DAVLVSAKTGI-----------GIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKM 228 (600)
T ss_pred eEEEEecCCCC-----------CHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEE
Confidence 58999999884 8999999999989988888899999999999999999999999999999999999999
Q ss_pred eecCCeeEEEEEEEEec---ccccceeccCceEEEEecccC-ccCcccceEEeeCC
Q psy5021 888 VGYKQTIKTTITGIEMF---KKTLDEGLAGENVGILLRSVK-REEVERGQVLAKIG 939 (1021)
Q Consensus 888 ~p~~~~~~~~Vksi~~~---~~~~~~a~~G~~v~l~l~~~~-~~~i~~G~vl~~~~ 939 (1021)
.|.+.. .+|++|... ..+++++.||| ++..+++++ ..+++.||+|++..
T Consensus 229 ~~~~~~--~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~~~~ 281 (600)
T PRK05433 229 MSTGKE--YEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGDTITLAK 281 (600)
T ss_pred ecCCce--EEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCCEEECCC
Confidence 987654 567787765 46899999999 777767764 57899999998765
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=299.85 Aligned_cols=260 Identities=23% Similarity=0.292 Sum_probs=201.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEe-------------ec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW-------------EV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-------------~~ 72 (1021)
..-.||+++||+|||||||+.+|. ...+|.+++|++||+|++....++.+ ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLt---------------g~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~ 96 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALS---------------GVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSY 96 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHh---------------CCCcccchhhHHhCCchhccccccccccCcccCCccccccc
Confidence 345789999999999999999995 12457789999999999988776532 00
Q ss_pred c-c---------------CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-CchhHHHHHHHHhhcCCC-EEE
Q psy5021 73 N-K---------------FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-IQPQTETVWFQSQKYKVP-KMI 134 (1021)
Q Consensus 73 ~-~---------------~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-~~~~t~~~~~~~~~~~~p-~ii 134 (1021)
. + ..+.++|||||||.+|..++.+++..+|++++||||.+| +++||++++..+...++| +|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIV 176 (460)
T PTZ00327 97 GSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIII 176 (460)
T ss_pred CCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEE
Confidence 0 0 024799999999999999999999999999999999997 799999999999888886 677
Q ss_pred EEeCcCCCCCC-HHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHH
Q psy5021 135 FVNKMDRIGAN-YNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELM 213 (1021)
Q Consensus 135 viNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 213 (1021)
|+||+|+...+ ..+..+++++.+.
T Consensus 177 vlNKiDlv~~~~~~~~~~ei~~~l~------------------------------------------------------- 201 (460)
T PTZ00327 177 LQNKIDLVKEAQAQDQYEEIRNFVK------------------------------------------------------- 201 (460)
T ss_pred EEecccccCHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 99999986321 1222222222110
Q ss_pred HHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccccc
Q psy5021 214 LETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL 293 (1021)
Q Consensus 214 ~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~ 293 (1021)
.. .....|++++||++|.|++.|+++|.+.+|.|...
T Consensus 202 ------------------------------~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~----------- 238 (460)
T PTZ00327 202 ------------------------------GT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRD----------- 238 (460)
T ss_pred ------------------------------hh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCC-----------
Confidence 00 02356899999999999999999999999988542
Q ss_pred CCCceEEEEEEEeecC--------CCceEEEEEEEeeEEecCCEEEeCCCc-------------eeeEeceEEEeecCCe
Q psy5021 294 NSNKFVSLVFKIFHDP--------FLGSLSFIRIYSGFIKVGDLVYNSTKK-------------VKEKIFRILRMFANSK 352 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~--------~~g~~~~~RV~sG~l~~gd~v~~~~~~-------------~~~~i~~i~~~~g~~~ 352 (1021)
.+.|+.++|..+|... ++|.+..|+|.+|++++||.|...+.+ ...+|..|.. ..
T Consensus 239 ~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~----~~ 314 (460)
T PTZ00327 239 LTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFA----EN 314 (460)
T ss_pred CCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEE----CC
Confidence 4678999998877443 379999999999999999999987643 2356777753 35
Q ss_pred eccccccCCCEEEEe-----cCC--ccccCCeeccCC
Q psy5021 353 KDINDAHFGDIVVIV-----GLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 353 ~~v~~a~aGdIv~i~-----gl~--~~~~gdtl~~~~ 382 (1021)
.++++|.|||.+++. ++. ++..|+.|+.+.
T Consensus 315 ~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~ 351 (460)
T PTZ00327 315 NELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPG 351 (460)
T ss_pred eECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCC
Confidence 779999999999994 332 367899999864
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=266.29 Aligned_cols=273 Identities=27% Similarity=0.386 Sum_probs=207.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+...--||+.|||+|||||||+.++........ +.........|..|+|++|||||..+.+..+.. +..+..+|
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~--~~~~~~y~~id~aPeEk~rGITIntahveyet~----~rhyahVD 81 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKG--GAEAKAYDQIDNAPEEKARGITINTAHVEYETA----NRHYAHVD 81 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhc--cccccchhhhccCchHhhcCceeccceeEEecC----CceEEecc
Confidence 456678999999999999999999863221100 111112334667899999999999998877777 88999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEE-EEeCcCCCC-CCH-HHHHHHHHHHhCCc
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMI-FVNKMDRIG-ANY-NNCIIDIKKKFNCI 160 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~-~~~-~~~~~~i~~~l~~~ 160 (1021)
+|||.||.+.++.+..++|++||||.|.+|.++||++++-.+++.++|.|+ |+||+|... .+. +.+-.++++.|.
T Consensus 82 cPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs-- 159 (394)
T COG0050 82 CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS-- 159 (394)
T ss_pred CCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999998766 599999864 222 111122222221
Q ss_pred eeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHH
Q psy5021 161 VLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKN 240 (1021)
Q Consensus 161 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~ 240 (1021)
T Consensus 160 -------------------------------------------------------------------------------- 159 (394)
T COG0050 160 -------------------------------------------------------------------------------- 159 (394)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceeEEEeccccCccc--------HHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCc
Q psy5021 241 SIRKLVLKNKIIPIMCGSSLKNKG--------IEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLG 312 (1021)
Q Consensus 241 ~~~~~~~~~~~~Pv~~~Sa~~~~G--------i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g 312 (1021)
..-..+.-.|+..+||++-.- |.+||+++.+|+|.|... .+.||++.|-.++...++|
T Consensus 160 ---~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~-----------~dkPflmpvEdvfsIsgrg 225 (394)
T COG0050 160 ---EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD-----------IDKPFLMPVEDVFSISGRG 225 (394)
T ss_pred ---HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc-----------ccccccccceeeEEEcCce
Confidence 111123456788888775322 689999999999999875 6799999999999999999
Q ss_pred eEEEEEEEeeEEecCCEEEeCCCc--eeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccCC
Q psy5021 313 SLSFIRIYSGFIKVGDLVYNSTKK--VKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 313 ~~~~~RV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~~ 382 (1021)
.++++||-.|+|+.|+.+-...-. ++..+..+-+ -+...++..|||-+++ .|.+ ++..|..|+.+.
T Consensus 226 tvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvem----frk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 226 TVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred eEEEEEEeeeeeccCCEEEEecccccceeEEEhHHH----HHHHHhccccCCCcceEEEeccccceecceEeecCC
Confidence 999999999999999999865433 2223333311 1345788999998887 4543 578888888764
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=297.07 Aligned_cols=155 Identities=28% Similarity=0.335 Sum_probs=118.2
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH------
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI------ 728 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~------ 728 (1021)
+++|++++|||||+|+|++..... .....|+|.+.....+..++..+.+|||||+.++.
T Consensus 176 ~ivG~~~~GKSsLin~l~~~~~~~---------------~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~ 240 (429)
T TIGR03594 176 AIIGRPNVGKSTLVNALLGEERVI---------------VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGV 240 (429)
T ss_pred EEECCCCCCHHHHHHHHHCCCeee---------------cCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhH
Confidence 455779999999999999753221 22345888888888888888899999999975432
Q ss_pred -----HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 -----KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 -----~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++|+|+|++++...++.+.+..+...+.| +|+|+||+|+.+..+..+.+.+++...+...+
T Consensus 241 e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-- 317 (429)
T TIGR03594 241 EKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDLVKDEKTREEFKKELRRKLPFLD-- 317 (429)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECcccCCCHHHHHHHHHHHHHhcccCC--
Confidence 2345678899999999999999999999999988888998 99999999998434445556666666555443
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.++++++||++|. |++++++++.+
T Consensus 318 --~~~vi~~SA~~g~-----------~v~~l~~~i~~ 341 (429)
T TIGR03594 318 --FAPIVFISALTGQ-----------GVDKLLDAIDE 341 (429)
T ss_pred --CCceEEEeCCCCC-----------CHHHHHHHHHH
Confidence 3689999999884 56666655543
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=273.09 Aligned_cols=185 Identities=39% Similarity=0.538 Sum_probs=156.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEE--eecccCceeEEEEc
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF--WEVNKFKYMINIID 83 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~--~~~~~~~~~i~liD 83 (1021)
+++|||+++||+|||||||+++|++..+.+...+......+.+|+.+.|++||+|+..+...+. +. ++.++|||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~----~~~i~~iD 76 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN----NRKITLID 76 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES----SEEEEEEE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc----ccceeecc
Confidence 4799999999999999999999999998877655544345679999999999999999999998 77 99999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++.++++.+|++|+|||+.+|++.++.++|+.+...++|+++|+||||+...++.+.++++++.+
T Consensus 77 tPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l------ 150 (188)
T PF00009_consen 77 TPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKL------ 150 (188)
T ss_dssp ESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHH------
T ss_pred cccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999998444444444444322
Q ss_pred eeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIR 243 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~ 243 (1021)
++.+
T Consensus 151 -------------------------------------------------------------~~~~--------------- 154 (188)
T PF00009_consen 151 -------------------------------------------------------------LKEY--------------- 154 (188)
T ss_dssp -------------------------------------------------------------HHHT---------------
T ss_pred -------------------------------------------------------------cccc---------------
Confidence 0000
Q ss_pred HHHhcC-ceeEEEeccccCcccHHHHHHHHHHhCCC
Q psy5021 244 KLVLKN-KIIPIMCGSSLKNKGIEFLLNSICEYLPS 278 (1021)
Q Consensus 244 ~~~~~~-~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~ 278 (1021)
...+ ..+|++++||++|.|++.|+++|.+++|+
T Consensus 155 --~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 155 --GENGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp --TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred --ccCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 0112 36899999999999999999999999996
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=271.19 Aligned_cols=271 Identities=28% Similarity=0.403 Sum_probs=209.1
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.--||+-|||+|||||||+-++..--.. ..+.........|..|+|+.|||||..+.+..+-. .+.+--+||||
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~--~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa----~RhYaH~DCPG 126 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAE--KGGAKFKKYDEIDKAPEEKARGITINAAHVEYETA----KRHYAHTDCPG 126 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHh--ccccccccHhhhhcChhhhhccceEeeeeeeeecc----ccccccCCCCc
Confidence 3469999999999999999988531110 00011112345677899999999999876665555 77888999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEE-EEeCcCCC-CCCHHHHH-HHHHHHhCCceee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMI-FVNKMDRI-GANYNNCI-IDIKKKFNCIVLP 163 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~ii-viNK~D~~-~~~~~~~~-~~i~~~l~~~~~~ 163 (1021)
|.||.+.++.+..+.|++|+||.|++|..+||++++-.+++.+++.|+ |+||.|.. +.+.-+.+ .++++.|.
T Consensus 127 HADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLs----- 201 (449)
T KOG0460|consen 127 HADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLS----- 201 (449)
T ss_pred hHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999765 59999986 33322221 13333321
Q ss_pred eeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIR 243 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~ 243 (1021)
T Consensus 202 -------------------------------------------------------------------------------- 201 (449)
T KOG0460|consen 202 -------------------------------------------------------------------------------- 201 (449)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCceeEEEeccccCc-------cc---HHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCce
Q psy5021 244 KLVLKNKIIPIMCGSSLKN-------KG---IEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGS 313 (1021)
Q Consensus 244 ~~~~~~~~~Pv~~~Sa~~~-------~G---i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~ 313 (1021)
..-..+.-.||++|||+.- .| |..|||++-+|+|.|... -+.||++.|-.++..+++|+
T Consensus 202 e~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~-----------~~~pFl~pie~vfsI~GRGT 270 (449)
T KOG0460|consen 202 EFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERD-----------LDKPFLLPIEDVFSIPGRGT 270 (449)
T ss_pred HcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccc-----------cCCCceeehhheeeecCCce
Confidence 1112355688999998732 22 688999999999999764 57899999999999999999
Q ss_pred EEEEEEEeeEEecCCEEEeCCCc--eeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccCCc
Q psy5021 314 LSFIRIYSGFIKVGDLVYNSTKK--VKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSLSE 383 (1021)
Q Consensus 314 ~~~~RV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~~~ 383 (1021)
++.+|+-.|+|++|+.+-....+ -+..++.|-.+ +..+++|.|||-+++ .|++ +++.|..++.+..
T Consensus 271 VvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF----~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 271 VVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMF----RKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred EEEEEEeecccccCCEEEEeccCcceeeEeehHHHH----HHHHHhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 99999999999999999865444 34455555322 346899999999987 6765 5899999988764
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-27 Score=263.75 Aligned_cols=247 Identities=25% Similarity=0.295 Sum_probs=193.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+-.-|+|+||+|||||||++.+...+-+.. ..-|||-+-.+..+.+... ....|+||||||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~------------------EaGGITQhIGA~~v~~~~~-~~~~itFiDTPG 64 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG------------------EAGGITQHIGAYQVPLDVI-KIPGITFIDTPG 64 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc------------------cCCceeeEeeeEEEEeccC-CCceEEEEcCCc
Confidence 456799999999999999999953332222 2347888888888877521 146899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF 166 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 166 (1021)
|.-|+....++...+|.++||||+.+|+++||.+.++.++..++|+++++||||++.+++.....++++. |..
T Consensus 65 HeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~------ 137 (509)
T COG0532 65 HEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLV------ 137 (509)
T ss_pred HHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCC------
Confidence 9999999999999999999999999999999999999999999999999999999999988887777654 211
Q ss_pred ecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy5021 167 NIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLV 246 (1021)
Q Consensus 167 p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~ 246 (1021)
++++
T Consensus 138 --------------------------------------------------------------------~E~~-------- 141 (509)
T COG0532 138 --------------------------------------------------------------------PEEW-------- 141 (509)
T ss_pred --------------------------------------------------------------------Hhhc--------
Confidence 1111
Q ss_pred hcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccccc-CCCceEEEEEEEeecCCCceEEEEEEEeeEEe
Q psy5021 247 LKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL-NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIK 325 (1021)
Q Consensus 247 ~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~-~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~ 325 (1021)
+.-+.++++||++|.|+++||+++.-..--- + +.. ++.+..+.|..+..++++|.++.+-|+.|||+
T Consensus 142 --gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~-e---------lka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~ 209 (509)
T COG0532 142 --GGDVIFVPVSAKTGEGIDELLELILLLAEVL-E---------LKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLK 209 (509)
T ss_pred --CCceEEEEeeccCCCCHHHHHHHHHHHHHHH-h---------hhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEe
Confidence 1225677789999999999999987332110 1 111 67899999999999999999999999999999
Q ss_pred cCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcc
Q psy5021 326 VGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKES 372 (1021)
Q Consensus 326 ~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~ 372 (1021)
.||.+....... .++.+......++..+.++--+-+.|++++
T Consensus 210 ~GD~iv~g~~~g-----~I~t~v~~~~~~i~~a~ps~~v~i~g~~ev 251 (509)
T COG0532 210 KGDIIVAGGEYG-----RVRTMVDDLGKPIKEAGPSKPVEILGLSEV 251 (509)
T ss_pred cCCEEEEccCCC-----ceEEeehhcCCCccccCCCCCeEEeccccc
Confidence 999999765432 233444455566777777776777776653
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=287.07 Aligned_cols=264 Identities=24% Similarity=0.290 Sum_probs=204.4
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----------
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------- 72 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------- 72 (1021)
+.+.-.||+++||+|||||||+++|. ..++|+.++|++||+|+..+...+.|..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~---------------~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~ 69 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALT---------------GVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYT 69 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhh---------------CeecccCHhHHhcCcEEEecccccccccccccCcccccc
Confidence 45566899999999999999999993 1358999999999999998876655531
Q ss_pred -c----------cCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhhcCC-CEEEEEeCc
Q psy5021 73 -N----------KFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQKYKV-PKMIFVNKM 139 (1021)
Q Consensus 73 -~----------~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~~~~-p~iiviNK~ 139 (1021)
. +..+.++|||||||.+|...+..++..+|++++|+|++++. ..++.+++..+...++ |+++|+||+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~ 149 (411)
T PRK04000 70 TEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKI 149 (411)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEee
Confidence 0 01368999999999999999999999999999999999998 8999999998888876 578899999
Q ss_pred CCCCCCH-HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhc
Q psy5021 140 DRIGANY-NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLS 218 (1021)
Q Consensus 140 D~~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (1021)
|+...+. ....+++.+.+.
T Consensus 150 Dl~~~~~~~~~~~~i~~~l~------------------------------------------------------------ 169 (411)
T PRK04000 150 DLVSKERALENYEQIKEFVK------------------------------------------------------------ 169 (411)
T ss_pred ccccchhHHHHHHHHHHHhc------------------------------------------------------------
Confidence 9864221 111111111110
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCce
Q psy5021 219 NNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKF 298 (1021)
Q Consensus 219 ~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~ 298 (1021)
.. ....+|++++||++|.|++.|++.|.+++|.|... .+.|+
T Consensus 170 -------------------------~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~-----------~~~~~ 211 (411)
T PRK04000 170 -------------------------GT--VAENAPIIPVSALHKVNIDALIEAIEEEIPTPERD-----------LDKPP 211 (411)
T ss_pred -------------------------cc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCC-----------CCCCc
Confidence 00 01236789999999999999999999999877542 46899
Q ss_pred EEEEEEEeec--------CCCceEEEEEEEeeEEecCCEEEeCCCce------------eeEeceEEEeecCCeeccccc
Q psy5021 299 VSLVFKIFHD--------PFLGSLSFIRIYSGFIKVGDLVYNSTKKV------------KEKIFRILRMFANSKKDINDA 358 (1021)
Q Consensus 299 ~~~V~k~~~~--------~~~g~~~~~RV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~g~~~~~v~~a 358 (1021)
+++|..+|.. +++|.+..|||.+|++++||.|...+.+. ..+|+.|... ..++++|
T Consensus 212 r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~----~~~~~~a 287 (411)
T PRK04000 212 RMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAG----GEKVEEA 287 (411)
T ss_pred eEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEEC----CEECCEE
Confidence 9999988743 34678999999999999999999876542 3577777532 4678999
Q ss_pred cCCCEEEEe-----cC--CccccCCeeccCCcc
Q psy5021 359 HFGDIVVIV-----GL--KESSTGDTLCSLSEN 384 (1021)
Q Consensus 359 ~aGdIv~i~-----gl--~~~~~gdtl~~~~~~ 384 (1021)
.|||.+++. ++ +++..|+.||+...+
T Consensus 288 ~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~ 320 (411)
T PRK04000 288 RPGGLVGVGTKLDPSLTKADALAGSVAGKPGTL 320 (411)
T ss_pred cCCCEEEEEeccCCCCCHHHccCccEEEcCCCC
Confidence 999999984 33 237789999987543
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=287.84 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=111.7
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh---------
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA--------- 725 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~--------- 725 (1021)
+++|.+|+|||||+|+|++.... ..+...|+|.+.....++.++..+.||||||..
T Consensus 215 ~iiG~~nvGKSSLin~l~~~~~~---------------~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~ 279 (472)
T PRK03003 215 ALVGKPNVGKSSLLNKLAGEERS---------------VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGH 279 (472)
T ss_pred EEECCCCCCHHHHHHHHhCCCcc---------------cccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchH
Confidence 45677999999999999985321 122345778888777788888999999999953
Q ss_pred -hhHHH-HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 726 -DYIKN-MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 726 -~~~~~-~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
.|... +..+++.||++++|+|++++...+....+..+...++| +|+|+||+|+.+.+ .......++...+....
T Consensus 280 e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~p-iIiV~NK~Dl~~~~-~~~~~~~~i~~~l~~~~-- 355 (472)
T PRK03003 280 EYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRA-LVLAFNKWDLVDED-RRYYLEREIDRELAQVP-- 355 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChh-HHHHHHHHHHHhcccCC--
Confidence 23222 23456899999999999999988888888888888998 99999999997622 22333344444443333
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+++++||++|. |++++++.+.+
T Consensus 356 --~~~~~~~SAk~g~-----------gv~~lf~~i~~ 379 (472)
T PRK03003 356 --WAPRVNISAKTGR-----------AVDKLVPALET 379 (472)
T ss_pred --CCCEEEEECCCCC-----------CHHHHHHHHHH
Confidence 2578999999884 56666666554
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=297.66 Aligned_cols=251 Identities=20% Similarity=0.245 Sum_probs=202.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++||+|||||||+++|.. ..+|..++|++||+|++.....+... .+..++|||||||.+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg---------------~~~dr~~eE~~rGiTI~l~~~~~~~~---~g~~i~~IDtPGhe~ 63 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITG---------------VNADRLPEEKKRGMTIDLGYAYWPQP---DGRVLGFIDVPGHEK 63 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhC---------------CCCccchhcccCCceEEeeeEEEecC---CCcEEEEEECCCHHH
Confidence 489999999999999999941 23577889999999998876665543 156799999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCCCCCC-HHHHHHHHHHHhCCceeeeeee
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDRIGAN-YNNCIIDIKKKFNCIVLPINFN 167 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~p 167 (1021)
|...+..++..+|++++|||+.+|+.+||++++..+...++|. ++|+||+|+...+ +....+++++.+.
T Consensus 64 fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~--------- 134 (614)
T PRK10512 64 FLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLR--------- 134 (614)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999986 6899999986321 1222222222110
Q ss_pred cccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy5021 168 IGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVL 247 (1021)
Q Consensus 168 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~ 247 (1021)
..
T Consensus 135 ----------------------------------------------------------------------------~~-- 136 (614)
T PRK10512 135 ----------------------------------------------------------------------------EY-- 136 (614)
T ss_pred ----------------------------------------------------------------------------hc--
Confidence 00
Q ss_pred cCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecC
Q psy5021 248 KNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVG 327 (1021)
Q Consensus 248 ~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~g 327 (1021)
.....|++++||++|.|++.|++.|.++.+ |... .++|++++|..+|..++.|.++.|+|.+|+++.|
T Consensus 137 ~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~-~~~~-----------~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~G 204 (614)
T PRK10512 137 GFAEAKLFVTAATEGRGIDALREHLLQLPE-REHA-----------AQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVG 204 (614)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhc-cccC-----------cCCCceEEEEEEeccCCCeEEEEEEEecceEecC
Confidence 011367899999999999999999987644 4322 4689999999999999999999999999999999
Q ss_pred CEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ec-CC--ccccCCeeccC
Q psy5021 328 DLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VG-LK--ESSTGDTLCSL 381 (1021)
Q Consensus 328 d~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~g-l~--~~~~gdtl~~~ 381 (1021)
|.|...+.+...+|.+|... ..++++|.|||.+++ .| ++ ++..||+|+..
T Consensus 205 d~v~i~p~~~~~~VrsIq~~----~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~ 259 (614)
T PRK10512 205 DTLWLTGVNKPMRVRGLHAQ----NQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLAD 259 (614)
T ss_pred CEEEEcCCCCcEEEEEEecC----CcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCC
Confidence 99999888878888887532 367999999999998 44 43 48999999976
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=284.61 Aligned_cols=144 Identities=26% Similarity=0.321 Sum_probs=113.0
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh-------
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD------- 726 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~------- 726 (1021)
++++|++|+|||||+|+|++.... ......|+|.+.....+...+..+.+|||||+.+
T Consensus 176 v~ivG~~n~GKStlin~ll~~~~~---------------~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~ 240 (435)
T PRK00093 176 IAIIGRPNVGKSSLINALLGEERV---------------IVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEG 240 (435)
T ss_pred EEEECCCCCCHHHHHHHHhCCCce---------------eecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhH
Confidence 457788999999999999975422 1233458899888888888889999999999643
Q ss_pred ---h-HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 727 ---Y-IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 727 ---~-~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
| ...+..++..+|++|+|+|++++...|+...+.++...+.| +|+++||+|+.+ ++..+.+.+++...+....
T Consensus 241 ~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~-~ivv~NK~Dl~~-~~~~~~~~~~~~~~l~~~~- 317 (435)
T PRK00093 241 VEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRA-LVIVVNKWDLVD-EKTMEEFKKELRRRLPFLD- 317 (435)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCCC-HHHHHHHHHHHHHhccccc-
Confidence 2 23456678899999999999999999999999999888998 899999999985 3334555666666555443
Q ss_pred CCCceEEEEecccccc
Q psy5021 803 DGENTKIVIGSALLAL 818 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~ 818 (1021)
.++++++||++|.
T Consensus 318 ---~~~i~~~SA~~~~ 330 (435)
T PRK00093 318 ---YAPIVFISALTGQ 330 (435)
T ss_pred ---CCCEEEEeCCCCC
Confidence 3689999999874
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=299.31 Aligned_cols=274 Identities=23% Similarity=0.235 Sum_probs=207.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc--cccc-----cCC--------cccccChHHHhhhCceeeeeeeEEEe
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHK--IGEV-----HHG--------TTITDWMQQEQERGITITSASVSIFW 70 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~--~g~~-----~~~--------~~~~d~~~~e~~rgiTi~~~~~~~~~ 70 (1021)
...-||+|+||+|||||||+++|++..+.+.. .+.+ ..| .+.+|+.++|++||+|++.....+.|
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 34457999999999999999999999998863 1111 122 35799999999999999999999998
Q ss_pred ecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCC-CEEEEEeCcCCCCCCHHHH
Q psy5021 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV-PKMIFVNKMDRIGANYNNC 149 (1021)
Q Consensus 71 ~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~-p~iiviNK~D~~~~~~~~~ 149 (1021)
+ +.+++|||||||.+|...+..++..+|++++|||+.+|+..||++++..+...++ |+++++||+|+...+.+ .
T Consensus 102 ~----~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~-~ 176 (632)
T PRK05506 102 P----KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQE-V 176 (632)
T ss_pred C----CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhH-H
Confidence 8 8899999999999999999999999999999999999999999999999988886 46778999998642211 1
Q ss_pred HHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy5021 150 IIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYI 229 (1021)
Q Consensus 150 ~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l 229 (1021)
++++.+.+
T Consensus 177 ~~~i~~~i------------------------------------------------------------------------ 184 (632)
T PRK05506 177 FDEIVADY------------------------------------------------------------------------ 184 (632)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111110
Q ss_pred cCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------HHHHHHHHhCCCCccccccCCccccccCCCc
Q psy5021 230 NNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------FLLNSICEYLPSPYDVDFKNNDYNINLNSNK 297 (1021)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p 297 (1021)
..-+. .+ .-...|++++||++|.|+. .|++.|.. +|.|... .++|
T Consensus 185 ---------~~~~~-~~-~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~-~~~~~~~-----------~~~p 241 (632)
T PRK05506 185 ---------RAFAA-KL-GLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET-VEIASDR-----------NLKD 241 (632)
T ss_pred ---------HHHHH-Hc-CCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc-CCCCCCc-----------CCCC
Confidence 00000 00 0012467788999999986 47777754 4544332 4688
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEec--CCccccC
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVG--LKESSTG 375 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~g--l~~~~~g 375 (1021)
+.+.|..++...+...-..|+|.+|+++.||.|...+.+...+|+.|... ..++++|.|||.+++.- -.++..|
T Consensus 242 ~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~i~rG 317 (632)
T PRK05506 242 FRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTP----DGDLDEAFAGQAVTLTLADEIDISRG 317 (632)
T ss_pred ceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEEC----CceeCEEcCCCeEEEEecCccccCCc
Confidence 99888877654322222569999999999999999888888999999643 34589999999999953 2347899
Q ss_pred CeeccCCc
Q psy5021 376 DTLCSLSE 383 (1021)
Q Consensus 376 dtl~~~~~ 383 (1021)
++||+++.
T Consensus 318 ~vL~~~~~ 325 (632)
T PRK05506 318 DMLARADN 325 (632)
T ss_pred cEEecCCC
Confidence 99999754
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=260.84 Aligned_cols=133 Identities=44% Similarity=0.646 Sum_probs=122.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc------cCceeEEEE
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN------KFKYMINII 82 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~------~~~~~i~li 82 (1021)
|||||+||+|||||||+++|++.+|.+.... ....+++|+.++|++||+|++++.+++.|... +.++.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~ii 78 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLI 78 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEE
Confidence 8999999999999999999999998776532 33467899999999999999999999999743 457899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|||||.+|..++..+++.+|++|+|+|+.+|+..+++.+|+++...++|+++|+||+|+..
T Consensus 79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~ 139 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLI 139 (222)
T ss_pred CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999973
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=279.35 Aligned_cols=259 Identities=24% Similarity=0.294 Sum_probs=200.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec--------------
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-------------- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-------------- 72 (1021)
.-.||+++||+|||||||+++|. ...+|+.++|++||+|+.....++.|..
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt---------------~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALT---------------GVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEP 67 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHh---------------CeecccCHhHHHcCceeEecccccccccccccCccccccccc
Confidence 35689999999999999999993 1247889999999999998876665331
Q ss_pred --cc------CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhhcCCC-EEEEEeCcCCC
Q psy5021 73 --NK------FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQKYKVP-KMIFVNKMDRI 142 (1021)
Q Consensus 73 --~~------~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~~~~p-~iiviNK~D~~ 142 (1021)
++ ..+.+++||||||.+|...+.+++..+|++++|||+++|. ..|+.+++..+...+++ +++++||+|+.
T Consensus 68 ~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 68 VCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 01 1468999999999999999999999999999999999998 89999999988888765 78889999986
Q ss_pred CCCH-HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCC
Q psy5021 143 GANY-NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNND 221 (1021)
Q Consensus 143 ~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d 221 (1021)
..+. .+..+++.+.+
T Consensus 148 ~~~~~~~~~~~i~~~l---------------------------------------------------------------- 163 (406)
T TIGR03680 148 SKEKALENYEEIKEFV---------------------------------------------------------------- 163 (406)
T ss_pred CHHHHHHHHHHHHhhh----------------------------------------------------------------
Confidence 4321 11111111111
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEE
Q psy5021 222 EFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSL 301 (1021)
Q Consensus 222 ~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~ 301 (1021)
... ....+|++++||++|.|++.|+++|..++|.|... .+.|+.++
T Consensus 164 ---------------------~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~-----------~~~~~~~~ 209 (406)
T TIGR03680 164 ---------------------KGT--VAENAPIIPVSALHNANIDALLEAIEKFIPTPERD-----------LDKPPLMY 209 (406)
T ss_pred ---------------------hhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCC-----------CCCCcEEE
Confidence 000 01236889999999999999999999999877442 46899999
Q ss_pred EEEEeecC--------CCceEEEEEEEeeEEecCCEEEeCCCce------------eeEeceEEEeecCCeeccccccCC
Q psy5021 302 VFKIFHDP--------FLGSLSFIRIYSGFIKVGDLVYNSTKKV------------KEKIFRILRMFANSKKDINDAHFG 361 (1021)
Q Consensus 302 V~k~~~~~--------~~g~~~~~RV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~g~~~~~v~~a~aG 361 (1021)
|..++... ++|.+..|||.+|+|+.||.|...+.+. ..+|..|... ..++++|.||
T Consensus 210 I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~----~~~~~~a~~G 285 (406)
T TIGR03680 210 VARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG----GYKVEEARPG 285 (406)
T ss_pred EEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEEC----CEECCEEcCC
Confidence 99888543 3678999999999999999999876531 3467777532 4789999999
Q ss_pred CEEEEe-----cCC--ccccCCeeccCC
Q psy5021 362 DIVVIV-----GLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 362 dIv~i~-----gl~--~~~~gdtl~~~~ 382 (1021)
|.+++. +++ ++..|+.|+.++
T Consensus 286 ~~v~i~l~~~~~i~~~dv~~G~vl~~~~ 313 (406)
T TIGR03680 286 GLVGVGTKLDPALTKADALAGQVVGKPG 313 (406)
T ss_pred CEEEEeeccCCCCCHHHcccccEEEcCC
Confidence 999983 332 367899999865
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=253.36 Aligned_cols=191 Identities=74% Similarity=1.083 Sum_probs=165.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
++.|++||++||||||+++|++.....+......++.+|+.++|+++|+|++.....+++++..++|+|||||.+|.+.+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHH
Confidence 57899999999999999999976433332222334568999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVI 811 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~ 811 (1021)
..++..+|++++|||+.+|...|+++++.++...++|++|+++||||+...++.++.+++++.++++.++++.++++++|
T Consensus 83 ~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iip 162 (195)
T cd01884 83 ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVR 162 (195)
T ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEE
Confidence 99999999999999999999999999999999999988889999999976556677788899999999999877899999
Q ss_pred ecccccccCCCCCccCcc-hHHHHHHhhhccCCC
Q psy5021 812 GSALLALEGKDDNQLGTT-SIKKLLDVLDSSIPT 844 (1021)
Q Consensus 812 iSa~~~~~~~~~~~~~~~-~i~~Ll~~l~~~l~~ 844 (1021)
+||++|.|..+ ...|+ ++++|+++|++..|.
T Consensus 163 iSa~~g~n~~~--~~~w~~~~~~l~~~l~~~~~~ 194 (195)
T cd01884 163 GSALKALEGDD--PNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred eeCccccCCCC--CCcchhcHhHHHHHHHhCCCC
Confidence 99999876543 24566 489999999986653
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-27 Score=287.77 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=111.8
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh---------
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA--------- 725 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~--------- 725 (1021)
+++|.+|+|||||+|+|++..... .....|+|.+.....+++++..+.||||||+.
T Consensus 454 ~ivG~~nvGKSSLin~l~~~~~~~---------------v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~ 518 (712)
T PRK09518 454 ALVGRPNVGKSSLLNQLTHEERAV---------------VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGA 518 (712)
T ss_pred EEECCCCCCHHHHHHHHhCccccc---------------cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhH
Confidence 467789999999999999854221 12245778887777788888899999999963
Q ss_pred hhHHH--HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 726 DYIKN--MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 726 ~~~~~--~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
.|... ...++..+|++++|+|++++...++...+..+...++| +|+|+||+|+.+.. ..+.+..++...+....
T Consensus 519 e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~p-iIiV~NK~DL~~~~-~~~~~~~~~~~~l~~~~-- 594 (712)
T PRK09518 519 EYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRA-LVLVFNKWDLMDEF-RRQRLERLWKTEFDRVT-- 594 (712)
T ss_pred HHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEEchhcCChh-HHHHHHHHHHHhccCCC--
Confidence 22222 23456889999999999999999998888888888999 99999999997632 22333444443333322
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
..+++++||++|. |+++|++.+.+.
T Consensus 595 --~~~ii~iSAktg~-----------gv~~L~~~i~~~ 619 (712)
T PRK09518 595 --WARRVNLSAKTGW-----------HTNRLAPAMQEA 619 (712)
T ss_pred --CCCEEEEECCCCC-----------CHHHHHHHHHHH
Confidence 3578999999884 666666665543
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=284.96 Aligned_cols=252 Identities=21% Similarity=0.242 Sum_probs=202.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+++||+|||||||+++|... .+|..++|.++|+|++.....+.+. ++.++|||||||.+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~---------------~~d~~~eE~~rGiTid~~~~~~~~~----~~~v~~iDtPGhe~ 62 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGI---------------AADRLPEEKKRGMTIDLGFAYFPLP----DYRLGFIDVPGHEK 62 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCc---------------cCcCChhHhcCCceEEeEEEEEEeC----CEEEEEEECCCHHH
Confidence 7999999999999999999521 1466788999999999988888877 68999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCH-HHHHHHHHHHhCCceeeeeee
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANY-NNCIIDIKKKFNCIVLPINFN 167 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~-~~~~~~i~~~l~~~~~~~~~p 167 (1021)
|...+..++..+|++++|||+++|+.+|+.+++..+...++| +++|+||+|+...+. +...+++++.+
T Consensus 63 f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l---------- 132 (581)
T TIGR00475 63 FISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQIL---------- 132 (581)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH----------
Confidence 999999999999999999999999999999999999989999 999999999864221 11111111111
Q ss_pred cccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy5021 168 IGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVL 247 (1021)
Q Consensus 168 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~ 247 (1021)
.. +.
T Consensus 133 ---------------------------------------------------------------------------~~-~~ 136 (581)
T TIGR00475 133 ---------------------------------------------------------------------------NS-YI 136 (581)
T ss_pred ---------------------------------------------------------------------------HH-hC
Confidence 00 00
Q ss_pred cCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecC
Q psy5021 248 KNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVG 327 (1021)
Q Consensus 248 ~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~g 327 (1021)
.....|++++||++|.|++++++.+..+++...... .++|+.+.|..++..++.|.++.|+|.+|+++.|
T Consensus 137 ~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~~----------~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~G 206 (581)
T TIGR00475 137 FLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIKR----------IQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVG 206 (581)
T ss_pred CCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCcC----------cCCCcEEEEEEEEecCCcEEEEEEEEecceEecC
Confidence 011357889999999999999999887765432210 3689999999999999999999999999999999
Q ss_pred CEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeecc
Q psy5021 328 DLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCS 380 (1021)
Q Consensus 328 d~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~ 380 (1021)
|.|...+.+...+|.+|... ..++++|.||+.+++ .|++ ++..|..++.
T Consensus 207 d~l~i~P~~~~~~Vr~iq~~----~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~ 259 (581)
T TIGR00475 207 DNLRLLPINHEVRVKAIQAQ----NQDVEIAYAGQRIALNLMDVEPESLKRGLLILT 259 (581)
T ss_pred CEEEECCCCceEEEeEEEEC----CccCCEEECCCEEEEEeCCCCHHHcCCceEEcC
Confidence 99999998888999998642 456999999999999 3443 3678855544
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=280.90 Aligned_cols=246 Identities=29% Similarity=0.365 Sum_probs=196.3
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe-EEEEEecCChhhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK-HYAHVDCPGHADY 727 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~-~i~liDtpG~~~~ 727 (1021)
.|...++++||+|||||||+++|.+... .....+|+|.+.....+.+++. .++|||||||++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v----------------~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F 148 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKV----------------AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF 148 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc----------------ccccCCceeecceEEEEEECCCcEEEEEECCCCcch
Confidence 4778999999999999999999987321 1122357888888877777555 8999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC----
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD---- 803 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~---- 803 (1021)
..++.+++..+|++++|+|+++|...||.+++..+...++| +|+++||+|+.+.. .+.+.+++.+ .++.
T Consensus 149 ~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~--~e~v~~~L~~----~g~~~~~~ 221 (587)
T TIGR00487 149 TSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKPEAN--PDRVKQELSE----YGLVPEDW 221 (587)
T ss_pred hhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccccCC--HHHHHHHHHH----hhhhHHhc
Confidence 99999999999999999999999999999999999999999 99999999986421 2222233322 2221
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc--CCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS--IPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKN 881 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~--l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~ 881 (1021)
....+++++||++|. |+++|+++|... +.......+.|++++|.+++..+|.|++++|+|.+|+|++
T Consensus 222 ~~~~~~v~iSAktGe-----------GI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~ 290 (587)
T TIGR00487 222 GGDTIFVPVSALTGD-----------GIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRV 290 (587)
T ss_pred CCCceEEEEECCCCC-----------ChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeC
Confidence 123679999999883 888888888532 2223334568999999999999999999999999999999
Q ss_pred CCEEEEeecCCeeEEEEEEEEe-cccccceeccCceEEEEecccCccCc-ccceEEe
Q psy5021 882 GEEIEIVGYKQTIKTTITGIEM-FKKTLDEGLAGENVGILLRSVKREEV-ERGQVLA 936 (1021)
Q Consensus 882 gd~v~i~p~~~~~~~~Vksi~~-~~~~~~~a~~G~~v~l~l~~~~~~~i-~~G~vl~ 936 (1021)
||.+.++|. ..+|++|+. ++..+++|.||+.|.+. ++ .++ ..||.+.
T Consensus 291 Gd~iv~~~~----~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl--~~~p~aGd~~~ 339 (587)
T TIGR00487 291 GDIVVVGAA----YGRVRAMIDENGKSVKEAGPSKPVEIL--GL--SDVPAAGDEFI 339 (587)
T ss_pred CCEEEECCC----ccEEEEEECCCCCCCCEECCCCEEEEe--CC--CCCCCCCCEEE
Confidence 999999873 268999998 56799999999999876 32 233 6788886
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=286.30 Aligned_cols=249 Identities=29% Similarity=0.342 Sum_probs=200.5
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
..|...++++||+|||||||+++|.+... .....+|+|.+.....+.+++..++|||||||++|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v----------------~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F 350 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNV----------------AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAF 350 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc----------------cccccCceeeeccEEEEEECCEEEEEEECCCCccc
Confidence 45889999999999999999999986321 11224688998888888888899999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh---hhccccCC
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL---LTEYDFDG 804 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~---l~~~~~~~ 804 (1021)
..++..++..+|++|||||+++|...||.++|..+...++| +||++||||+.+.. .+.+..++.+. ...+ .
T Consensus 351 ~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~---g 424 (787)
T PRK05306 351 TAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGAN--PDRVKQELSEYGLVPEEW---G 424 (787)
T ss_pred hhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccccccC--HHHHHHHHHHhcccHHHh---C
Confidence 99999999999999999999999999999999999999999 99999999996521 22233333221 1111 1
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC--CCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI--PTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNG 882 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l--~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~g 882 (1021)
..++++++||++|. |+++|+++|.... .......+.|++..|.+++..+|.|+|++|+|.+|+|++|
T Consensus 425 ~~vp~vpvSAktG~-----------GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~G 493 (787)
T PRK05306 425 GDTIFVPVSAKTGE-----------GIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVG 493 (787)
T ss_pred CCceEEEEeCCCCC-----------CchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecC
Confidence 24789999999884 7888888876321 1223445789999999999999999999999999999999
Q ss_pred CEEEEeecCCeeEEEEEEEEec-ccccceeccCceEEEEecccCccCc-ccceEEee
Q psy5021 883 EEIEIVGYKQTIKTTITGIEMF-KKTLDEGLAGENVGILLRSVKREEV-ERGQVLAK 937 (1021)
Q Consensus 883 d~v~i~p~~~~~~~~Vksi~~~-~~~~~~a~~G~~v~l~l~~~~~~~i-~~G~vl~~ 937 (1021)
|.|.+.| ...+|++|+.+ +..++.|.||+.|.+. + ..++ ..||+|+.
T Consensus 494 d~vv~g~----~~gkVr~m~~~~~~~v~~A~pGd~V~I~--g--l~~~p~~Gd~l~~ 542 (787)
T PRK05306 494 DIVVAGT----TYGRVRAMVDDNGKRVKEAGPSTPVEIL--G--LSGVPQAGDEFVV 542 (787)
T ss_pred CEEEECC----cEEEEEEEECCCCCCCCEEcCCCeEEEe--C--CCCCCCCCCEEEE
Confidence 9999874 24799999985 6699999999999876 2 2344 68999984
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=251.64 Aligned_cols=250 Identities=28% Similarity=0.361 Sum_probs=207.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+..||++||||||+.++. +..+|..++|++||+|++....++... ++.+.|||.|||.+
T Consensus 2 ii~t~GhidHgkT~L~~alt---------------g~~~d~l~EekKRG~TiDlg~~y~~~~----d~~~~fIDvpgh~~ 62 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT---------------GGVTDRLPEEKKRGITIDLGFYYRKLE----DGVMGFIDVPGHPD 62 (447)
T ss_pred eEEEeeeeeccchhhhhhhc---------------ccccccchhhhhcCceEeeeeEeccCC----CCceEEeeCCCcHH
Confidence 58999999999999999983 245688999999999999988877777 78999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeeec
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNI 168 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p~ 168 (1021)
|...+..++...|+|+||||+.+|+.+||.+++..+...+++. ++|+||+|+.+.. +.-+.+++.++
T Consensus 63 ~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~--r~e~~i~~Il~---------- 130 (447)
T COG3276 63 FISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA--RIEQKIKQILA---------- 130 (447)
T ss_pred HHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHH--HHHHHHHHHHh----------
Confidence 9999999999999999999999999999999999999999998 8889999986321 11111111111
Q ss_pred ccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q psy5021 169 GIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLK 248 (1021)
Q Consensus 169 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~ 248 (1021)
.++
T Consensus 131 -----------------------------------------------~l~------------------------------ 133 (447)
T COG3276 131 -----------------------------------------------DLS------------------------------ 133 (447)
T ss_pred -----------------------------------------------hcc------------------------------
Confidence 000
Q ss_pred CceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCC
Q psy5021 249 NKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGD 328 (1021)
Q Consensus 249 ~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd 328 (1021)
-...|+|..||.+|.||++|-+.|.+..- +.++. .+.||+.+|...|..++.|++..|-++||+++.||
T Consensus 134 l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~e~d----------~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D 202 (447)
T COG3276 134 LANAKIFKTSAKTGRGIEELKNELIDLLE-EIERD----------EQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGD 202 (447)
T ss_pred cccccccccccccCCCHHHHHHHHHHhhh-hhhhc----------cCCceEEEEeeEEEeccccEEEEeEEeeeeEEECC
Confidence 01246788899999999999999987764 22211 57899999999999999999999999999999999
Q ss_pred EEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe--cC--CccccCCeeccCC
Q psy5021 329 LVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV--GL--KESSTGDTLCSLS 382 (1021)
Q Consensus 329 ~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~gdtl~~~~ 382 (1021)
.++.++.++..+|.+|... -.++++|.||+-|++. |. +++..|+.|..+.
T Consensus 203 ~L~l~p~~k~v~VRsIq~~----d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 203 KLYLSPINKEVRVRSIQAH----DVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred EEEEecCCCeEEEEeeeec----CcchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 9999999999999988432 3568999999999983 44 2377899888754
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=252.63 Aligned_cols=252 Identities=23% Similarity=0.296 Sum_probs=201.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+.+-|.|+||+|||||||+++|....-+... ..|||..-.+..+.+.. +..++|+|||
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E------------------~GGITQhIGAF~V~~p~---G~~iTFLDTP 209 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE------------------AGGITQHIGAFTVTLPS---GKSITFLDTP 209 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhh------------------cCCccceeceEEEecCC---CCEEEEecCC
Confidence 35678999999999999999999543332222 34788887777776662 5899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeee
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 165 (1021)
||..|..+..|+...+|.++|||.|.+|+.+||.+.+..++..++|+|+++||+|+++++++++..++-.. |.
T Consensus 210 GHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi------ 282 (683)
T KOG1145|consen 210 GHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GI------ 282 (683)
T ss_pred cHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-Cc------
Confidence 99999999999999999999999999999999999999999999999999999999999998887776432 10
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
..++
T Consensus 283 --------------------------------------------------------------------~~E~-------- 286 (683)
T KOG1145|consen 283 --------------------------------------------------------------------VVED-------- 286 (683)
T ss_pred --------------------------------------------------------------------cHHH--------
Confidence 0111
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccccc-CCCceEEEEEEEeecCCCceEEEEEEEeeEE
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL-NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFI 324 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~-~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l 324 (1021)
-+--++++.+||++|.|++.|.+++.-..-- .+ +.. |.+|+-++|....-|+++|.++.+-|-.|||
T Consensus 287 --~GGdVQvipiSAl~g~nl~~L~eaill~Ae~-md---------LkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTL 354 (683)
T KOG1145|consen 287 --LGGDVQVIPISALTGENLDLLEEAILLLAEV-MD---------LKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTL 354 (683)
T ss_pred --cCCceeEEEeecccCCChHHHHHHHHHHHHH-hh---------cccCCCCCceEEEEEeeecCCccceeEEEEecccc
Confidence 1233668888999999999999998633210 00 001 7899999999999999999999999999999
Q ss_pred ecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcc-ccCCee
Q psy5021 325 KVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKES-STGDTL 378 (1021)
Q Consensus 325 ~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~gdtl 378 (1021)
++|+.|..... -.|+..++-..| .++++|.+|.-+-+.|.+++ ..||-+
T Consensus 355 kKG~vlV~G~~--w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~v 404 (683)
T KOG1145|consen 355 KKGSVLVAGKS--WCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEV 404 (683)
T ss_pred ccccEEEEech--hhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceE
Confidence 99999986543 346666655554 56999999999999999875 456644
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=282.01 Aligned_cols=282 Identities=27% Similarity=0.418 Sum_probs=210.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee----CCeEEEEEecCChhh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES----ENKHYAHVDCPGHAD 726 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~----~~~~i~liDtpG~~~ 726 (1021)
.-++|++||++||||||+++|+.....+........+++|..+.|++||+|++.+...+.+ .+..++|+|||||.+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 3478999999999999999998765544432222345689999999999999988766554 467899999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc---------hhhHHHHHHHHHHHhh
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ---------DKELLDLVEMEIRELL 797 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---------~~~~~~~~~~~~~~~l 797 (1021)
|...+..+++.+|++|+|||+..|+..|++.+|..+...++| .|+++||||+.. ..+++..+.+++..++
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l 178 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVK-PVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLI 178 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCC-eEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999889999 688999999762 1223444444454454
Q ss_pred hccc---------cCCCceEEEEecccccccCCCCC--ccC--------------------cc-hHHHHHHhhhccCCCC
Q psy5021 798 TEYD---------FDGENTKIVIGSALLALEGKDDN--QLG--------------------TT-SIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 798 ~~~~---------~~~~~~~ii~iSa~~~~~~~~~~--~~~--------------------~~-~i~~Ll~~l~~~l~~~ 845 (1021)
..+. +...+..+++.||+.++.-.... ... |. -...|++.+.+++|.|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP 258 (731)
T PRK07560 179 KGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNP 258 (731)
T ss_pred HHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCCh
Confidence 4332 22222345567887653111000 000 00 0126899999989888
Q ss_pred CC-------------------------CCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEE
Q psy5021 846 NR-------------------------ITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITG 900 (1021)
Q Consensus 846 ~~-------------------------~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vks 900 (1021)
.. ..+.|+.+.|..++..++.|.++.|+|.+|+|++||.|.+.+.+. +.+|..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~--~~~v~~ 336 (731)
T PRK07560 259 IEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKK--KNRVQQ 336 (731)
T ss_pred hhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCC--ceEehe
Confidence 42 124589999999999999999999999999999999999886544 356777
Q ss_pred EEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 901 IEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 901 i~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|... ..++++|.|||++++. + ..++.+|++|+...
T Consensus 337 i~~~~g~~~~~v~~a~AGdIv~i~--g--l~~~~~GdtL~~~~ 375 (731)
T PRK07560 337 VGIYMGPEREEVEEIPAGNIAAVT--G--LKDARAGETVVSVE 375 (731)
T ss_pred ehhhhcCCCceeeeECCCCEEEEE--c--ccccccCCEEeCCC
Confidence 7765 4589999999999985 3 34677899998653
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=254.37 Aligned_cols=272 Identities=24% Similarity=0.291 Sum_probs=211.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc------------ccccc-CCcccccChHHHhhhCceeeeeeeEEEee
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHK------------IGEVH-HGTTITDWMQQEQERGITITSASVSIFWE 71 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~------------~g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~ 71 (1021)
....-|..++||+|+|||||..+|||.-|.+.. .|.-. ...+.+|...+|++||+|+......|+-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 345678999999999999999999999888754 22221 12577899999999999999999888866
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCCEEE-EEeCcCCCC
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVPKMI-FVNKMDRIG 143 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~ 143 (1021)
.+.++|+|+|||.||...++.+...+|.++|||||+-| ...||+++...++..|+.-++ ++||||..+
T Consensus 254 ----~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 254 ----SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS 329 (603)
T ss_pred ----ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence 89999999999999999999999999999999999965 568999999999999987554 599999988
Q ss_pred CCH---HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCC
Q psy5021 144 ANY---NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNN 220 (1021)
Q Consensus 144 ~~~---~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~ 220 (1021)
++- +++...+...|...+
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~----------------------------------------------------------- 350 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESC----------------------------------------------------------- 350 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhc-----------------------------------------------------------
Confidence 763 333333333331100
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccH---------------HHHHHHHHHhCCCCcccccc
Q psy5021 221 DEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGI---------------EFLLNSICEYLPSPYDVDFK 285 (1021)
Q Consensus 221 d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi---------------~~Ll~~i~~~lP~p~~~~~~ 285 (1021)
.+... .-+|+|+ |+++|.|+ ..||+.|-. +-.|...
T Consensus 351 -----------gf~es-----------~v~FIPi---SGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~--- 401 (603)
T KOG0458|consen 351 -----------GFKES-----------SVKFIPI---SGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERP--- 401 (603)
T ss_pred -----------CcccC-----------CcceEec---ccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCc---
Confidence 00000 0145555 78877775 246666655 4444332
Q ss_pred CCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEE
Q psy5021 286 NNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVV 365 (1021)
Q Consensus 286 ~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~ 365 (1021)
-+.||++-|..++..+..|....|||.||.++.||+|++.+......|..|-.- -.+...|.|||-|.
T Consensus 402 --------~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~----~~~~~~a~AGD~Vs 469 (603)
T KOG0458|consen 402 --------IDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN----DEPKTWAVAGDNVS 469 (603)
T ss_pred --------ccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC----CCcceeEeeCCEEE
Confidence 456999999999999999999999999999999999999998888888887432 56788899999999
Q ss_pred E--ecCC--ccccCCeecc
Q psy5021 366 I--VGLK--ESSTGDTLCS 380 (1021)
Q Consensus 366 i--~gl~--~~~~gdtl~~ 380 (1021)
+ .|+. .+..||+++.
T Consensus 470 l~L~~i~~n~v~~g~i~~~ 488 (603)
T KOG0458|consen 470 LKLPGILPNLVQVGDIADS 488 (603)
T ss_pred EecCccChhhcccceeeec
Confidence 8 4533 3789999985
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=268.79 Aligned_cols=230 Identities=27% Similarity=0.358 Sum_probs=171.4
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee----------------
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES---------------- 711 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~---------------- 711 (1021)
.+|+..++++||+|||||||+++|++..... +...|+|.+.....+..
T Consensus 1 ~~r~piV~IiG~~d~GKTSLln~l~~~~v~~----------------~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v 64 (590)
T TIGR00491 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAK----------------REAGGITQHIGATEIPMDVIEGICGDLLKKFKI 64 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcccccc----------------ccCCceecccCeeEeeecccccccccccccccc
Confidence 3678899999999999999999999743111 11123333322222211
Q ss_pred --CCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhh----
Q psy5021 712 --ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKE---- 784 (1021)
Q Consensus 712 --~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~---- 784 (1021)
....++|||||||++|...+..+++.+|++++|+|+++|...|+.+++.++...++| +|+++||+|+.+ +..
T Consensus 65 ~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~~~ 143 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHEGR 143 (590)
T ss_pred ccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhccCc
Confidence 112488999999999999999999999999999999999999999999999999999 999999999964 110
Q ss_pred -HH-------HHHHHH-------HHHhhhccccCC----------CceEEEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 785 -LL-------DLVEME-------IRELLTEYDFDG----------ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 785 -~~-------~~~~~~-------~~~~l~~~~~~~----------~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
.+ +.++.. +...+...|+.. ..++++|+||++| +|+++|+++|.
T Consensus 144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG-----------eGideLl~~l~ 212 (590)
T TIGR00491 144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG-----------EGIPELLTMLA 212 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC-----------CChhHHHHHHH
Confidence 00 011111 111233344432 2579999999988 38888888775
Q ss_pred cc----CC-CCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc
Q psy5021 840 SS----IP-TPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK 905 (1021)
Q Consensus 840 ~~----l~-~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~ 905 (1021)
.. ++ ..+...+.|++++|.+++.++|.|+|++|.|.+|+|++||.+.++|....+.++|++|..++
T Consensus 213 ~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~ 283 (590)
T TIGR00491 213 GLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPR 283 (590)
T ss_pred HHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCC
Confidence 32 21 12234578999999999999999999999999999999999999997666678999999764
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=237.96 Aligned_cols=127 Identities=33% Similarity=0.476 Sum_probs=113.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc-CCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.||+++||+|||||||+++|++... ..|+.. .+.+.+|+.++|++||+|+++....+.|+ +++++|+|||||
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~---~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----~~~i~~iDtPG~ 75 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLA---KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA----NRHYAHVDCPGH 75 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---hcccccccccccccCChhhhhcCccEEeeeeEecCC----CeEEEEEECcCH
Confidence 5899999999999999999997643 233322 33567999999999999999998888887 889999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~ 142 (1021)
.+|..++.+++..+|++++|||+.+|+..+++++|+.+...++| +|+|+||||+.
T Consensus 76 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 76 ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999998 66889999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=264.73 Aligned_cols=301 Identities=22% Similarity=0.249 Sum_probs=190.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc--CCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH--HGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~--~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
+...|+|+||+|||||||+++|.........+|... -|.++.++...+..+|.+.......+.+ ..++||||
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~iDT 78 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKI------PGLLFIDT 78 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceecccccccccc------CCEEEEEC
Confidence 456799999999999999999965433333332221 1222222221122222222110001111 13799999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC-CCHHHHHHHHHHHhCCceee
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG-ANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~-~~~~~~~~~i~~~l~~~~~~ 163 (1021)
|||.+|...+.++++.+|++++|+|+++|++.++.+.++.+...++|+++++||+|+.. .....- ..+.+.+..
T Consensus 79 PG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~-~~~~e~~~~---- 153 (586)
T PRK04004 79 PGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTED-APFLESIEK---- 153 (586)
T ss_pred CChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcC-chHHHHHhh----
Confidence 99999999999999999999999999999999999999999999999999999999852 100000 000000000
Q ss_pred eeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSI 242 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~ 242 (1021)
-+... ...+.+.+.+ +..+|.. .+..+.+.. +
T Consensus 154 ----------------------------------~~~~v---~~~f~~~l~e---------v~~~L~~~g~~~e~~~~-~ 186 (586)
T PRK04004 154 ----------------------------------QSQRV---QQELEEKLYE---------LIGQLSELGFSADRFDR-V 186 (586)
T ss_pred ----------------------------------hhHHH---HHHHHHHHHH---------HHHHHHhcCCChhhhhh-h
Confidence 00000 0001111000 1112322 333333222 1
Q ss_pred HHHHhcCceeEEEeccccCcccHHHHHHHHHH----hCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEE
Q psy5021 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICE----YLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIR 318 (1021)
Q Consensus 243 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~----~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~R 318 (1021)
++ .+..+|++++||++|.|+++|++.+.. ++|.+..++ ++.|+.+.|++++.+++.|.+++++
T Consensus 187 ~~---~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~----------~~~~~~~~V~ev~~~~g~G~v~~~~ 253 (586)
T PRK04004 187 KD---FTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKID----------VEGPGKGTVLEVKEERGLGTTIDVI 253 (586)
T ss_pred hc---cCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccC----------CCCCeEEEEEEEEEeCCCceEEEEE
Confidence 11 134578899999999999999998864 355554432 5689999999999999999999999
Q ss_pred EEeeEEecCCEEEeCCCce--eeEeceEEEee--------cCCeeccccccCCCEEEE--ecCCccccCCee
Q psy5021 319 IYSGFIKVGDLVYNSTKKV--KEKIFRILRMF--------ANSKKDINDAHFGDIVVI--VGLKESSTGDTL 378 (1021)
Q Consensus 319 V~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~--------g~~~~~v~~a~aGdIv~i--~gl~~~~~gdtl 378 (1021)
|++|+|++||.|...+.+. ..+|..|.... +.....++++.|..-+-+ .|++.+..|+.+
T Consensus 254 v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~~~ 325 (586)
T PRK04004 254 LYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALAGSPL 325 (586)
T ss_pred EEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCCCCeE
Confidence 9999999999999877653 35788887652 224456667666555544 477777666654
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=266.82 Aligned_cols=246 Identities=29% Similarity=0.317 Sum_probs=181.6
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe----------------
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE---------------- 710 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~---------------- 710 (1021)
..+|+..++++||+|||||||+++|.+.... .+. ..|+|.......+.
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~--------------~g~itq~ig~~~~~~~~~~~~~~~~~~~~~ 65 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKE--------------AGGITQHIGATEVPIDVIEKIAGPLKKPLP 65 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccc--cCC--------------CCceEEeeceeeccccccccccceeccccc
Confidence 4578899999999999999999999864211 110 11222222111111
Q ss_pred --eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-h-----
Q psy5021 711 --SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-D----- 782 (1021)
Q Consensus 711 --~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~----- 782 (1021)
..-..++|||||||++|...+..+++.+|++++|+|+++|...|+.+++.++...++| +++++||+|+.. +
T Consensus 66 ~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~ 144 (586)
T PRK04004 66 IKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTED 144 (586)
T ss_pred cccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcC
Confidence 0011379999999999999999999999999999999999999999999999999999 999999999852 1
Q ss_pred --------------hhHHHHHHHHHHHhhhccccCC----------CceEEEEecccccccCCCCCccCcchHHHHHHhh
Q psy5021 783 --------------KELLDLVEMEIRELLTEYDFDG----------ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVL 838 (1021)
Q Consensus 783 --------------~~~~~~~~~~~~~~l~~~~~~~----------~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l 838 (1021)
...++....++...+...|+.. ..++++|+||++|. |+++|++.+
T Consensus 145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe-----------Gi~dLl~~i 213 (586)
T PRK04004 145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE-----------GIPDLLMVL 213 (586)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC-----------ChHHHHHHH
Confidence 1122233334444555556543 35789999999884 777777766
Q ss_pred hc----cCCC-CCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc--------
Q psy5021 839 DS----SIPT-PNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK-------- 905 (1021)
Q Consensus 839 ~~----~l~~-~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~-------- 905 (1021)
.. +++. .....+.|++++|.+++..+|.|+|++|+|.+|+|++||.+.++|......++|++|..++
T Consensus 214 ~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~ 293 (586)
T PRK04004 214 AGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDP 293 (586)
T ss_pred HHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhcccc
Confidence 43 1222 2334578999999999999999999999999999999999999987655668999999863
Q ss_pred ----cccceeccCceEEEE
Q psy5021 906 ----KTLDEGLAGENVGIL 920 (1021)
Q Consensus 906 ----~~~~~a~~G~~v~l~ 920 (1021)
..+++|.|..-|.+.
T Consensus 294 ~~~~~~~~~~~~~~~v~i~ 312 (586)
T PRK04004 294 EDKFKPVDEVVAAAGVKIS 312 (586)
T ss_pred ccccccccccCCCCceEEE
Confidence 355666666555543
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=233.28 Aligned_cols=286 Identities=21% Similarity=0.337 Sum_probs=220.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCC----cccccChHHHhhhCceeeeeeeEEEeecc--------
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHG----TTITDWMQQEQERGITITSASVSIFWEVN-------- 73 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~-------- 73 (1021)
..--+|+..||+|||||||+.+|. .|+.++| ..+.|..++|.+||.|-..+..-+-|+.+
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~Lv--------tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknP 186 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLV--------TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNP 186 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEE--------ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCc
Confidence 345689999999999999999994 5566665 46889999999999998777666655542
Q ss_pred -----------cCceeEEEEcCCCCCCcHHHHHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcC
Q psy5021 74 -----------KFKYMINIIDTPGHVDFTIEVERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMD 140 (1021)
Q Consensus 74 -----------~~~~~i~liDtPG~~~f~~~~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D 140 (1021)
..+..+.|+||-||..+...+++++ ...|..+|+|.|.+|++..|++++-.+...++|+|++++|+|
T Consensus 187 ld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D 266 (527)
T COG5258 187 LDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKID 266 (527)
T ss_pred ccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecc
Confidence 1346799999999999999999999 578999999999999999999999999999999999999999
Q ss_pred CCCC-CHHHHHHHHHHHhCC-ceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhc
Q psy5021 141 RIGA-NYNNCIIDIKKKFNC-IVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLS 218 (1021)
Q Consensus 141 ~~~~-~~~~~~~~i~~~l~~-~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (1021)
.... .++.+.+++...|.. +-+|+ ++ .
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~--~v-------------------------------------------------k 295 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPL--IV-------------------------------------------------K 295 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccce--ee-------------------------------------------------e
Confidence 9644 467788888777642 10111 00 0
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCc-eeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCc
Q psy5021 219 NNDEFFLEKYINNNYSINDIKNSIRKLVLKNK-IIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNK 297 (1021)
Q Consensus 219 ~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~-~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p 297 (1021)
+.|+ ...+ ..+...++ ++|+|.+|+.+|.|++ +|+.+..+||.-... . ..+|
T Consensus 296 ~~~d---------------~v~a-a~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr~~-~---------d~g~ 348 (527)
T COG5258 296 DTDD---------------VVLA-AKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRRRW-D---------DEGP 348 (527)
T ss_pred ccch---------------hHHh-hhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCccccc-C---------CCCC
Confidence 0111 1111 11223344 8999999999999995 555566777754211 0 5789
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc----eeeEeceEEEeecCCeeccccccCCCEEEE--ecCCc
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK----VKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLKE 371 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~ 371 (1021)
|.+||.|++...++|.++.+-|-||.++.||+|+..+.. .+.+|++|-. .+..+++|.||+|+++ .|.+.
T Consensus 349 flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIem----h~~rvdsa~aG~iig~Al~gv~~ 424 (527)
T COG5258 349 FLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEM----HHYRVDSAKAGSIIGIALKGVEK 424 (527)
T ss_pred eEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEE----eeEEeccccCCcEEEEEecccCH
Confidence 999999999999999999999999999999999965432 4567777743 2567999999999988 46654
Q ss_pred --cccCCeeccC
Q psy5021 372 --SSTGDTLCSL 381 (1021)
Q Consensus 372 --~~~gdtl~~~ 381 (1021)
++.|..|...
T Consensus 425 e~lerGMVl~~~ 436 (527)
T COG5258 425 EELERGMVLSAG 436 (527)
T ss_pred HHHhcceEecCC
Confidence 8889988775
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=269.95 Aligned_cols=275 Identities=23% Similarity=0.298 Sum_probs=205.5
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccc-c-ccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYG-G-EVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~-~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
.+++++||+|+|||||+++|+.....+.. + .....+++|..+.|+++|+|++.....+++.++.++|+|||||.+|..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 47899999999999999999854433221 1 112345789999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
.+..+++.+|++|+||||..|+..|+++++.++...++| +|+++||||+.+.. +....+++++.+...- ....
T Consensus 91 ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~----~~~~ 163 (693)
T PRK00007 91 EVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVP-RIAFVNKMDRTGAD--FYRVVEQIKDRLGANP----VPIQ 163 (693)
T ss_pred HHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHhCCCe----eeEE
Confidence 999999999999999999999999999999999999999 67899999987522 2333344433332210 1123
Q ss_pred EEecccccccC-----------C-----CC--------------------------------------------------
Q psy5021 810 VIGSALLALEG-----------K-----DD-------------------------------------------------- 823 (1021)
Q Consensus 810 i~iSa~~~~~~-----------~-----~~-------------------------------------------------- 823 (1021)
+|+|+..+..+ + +.
T Consensus 164 ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~ 243 (693)
T PRK00007 164 LPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKA 243 (693)
T ss_pred ecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHH
Confidence 34444332100 0 00
Q ss_pred -----------------CccCcchHHHHHHhhhccCCCCCC--------------------CCCCCeeEEEEEEEeeCCc
Q psy5021 824 -----------------NQLGTTSIKKLLDVLDSSIPTPNR--------------------ITDKPFLMPIEDVFSISGR 866 (1021)
Q Consensus 824 -----------------~~~~~~~i~~Ll~~l~~~l~~~~~--------------------~~~~p~~~~I~~~~~v~g~ 866 (1021)
......|+..||+.+.+++|.|.. ..+.|+...|..+...+..
T Consensus 244 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~ 323 (693)
T PRK00007 244 ALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFV 323 (693)
T ss_pred HHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCC
Confidence 000113678899999999988742 1245899999999998999
Q ss_pred eeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 867 GTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 867 G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|.+..+||.+|+|++||.|+..-.++ +.+|..|... ..++++|.|||.+++. ++ ++++.||+|++..
T Consensus 324 G~ia~~RV~sGtl~~g~~v~~~~~~~--~eki~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~GdtL~~~~ 394 (693)
T PRK00007 324 GKLTFFRVYSGVLESGSYVLNSTKGK--KERIGRILQMHANKREEIKEVRAGDIAAAV--GL--KDTTTGDTLCDEK 394 (693)
T ss_pred CcEEEEEEeeeEEcCCCEEEeCCCCc--eeEeceeEEeccCCcccccccCCCcEEEEe--CC--ccCCcCCEeeCCC
Confidence 99999999999999999997542222 3456666654 3589999999999884 32 3578999998643
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=264.64 Aligned_cols=247 Identities=26% Similarity=0.300 Sum_probs=191.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee----CCeEEEEEecCChh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES----ENKHYAHVDCPGHA 725 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~----~~~~i~liDtpG~~ 725 (1021)
|...++++||++||||||+++|.+... ..+..+|+|.+.....+.+ .+..++|||||||+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~----------------~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQI----------------AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccC----------------ccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 677899999999999999999987431 1123357777666554443 35789999999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh---hhcccc
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL---LTEYDF 802 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~---l~~~~~ 802 (1021)
+|..++..++..+|++|||||+++|...||.+++..+...++| +||++||+|+.+.. .+.+..++..+ ...++
T Consensus 307 ~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g- 382 (742)
T CHL00189 307 AFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKANAN--TERIKQQLAKYNLIPEKWG- 382 (742)
T ss_pred HHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCccccC--HHHHHHHHHHhccchHhhC-
Confidence 9999999999999999999999999999999999999999999 99999999987521 23333333221 11111
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC--CCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEee
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP--TPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVK 880 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~--~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~ 880 (1021)
..++++++||++|. |++.|+++|..... ......+.|+...|.+.+..++.|++++|+|.+|+|+
T Consensus 383 --~~vpvv~VSAktG~-----------GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr 449 (742)
T CHL00189 383 --GDTPMIPISASQGT-----------NIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLH 449 (742)
T ss_pred --CCceEEEEECCCCC-----------CHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEe
Confidence 24689999999883 88999998865332 1222345688899999998899999999999999999
Q ss_pred CCCEEEEeecCCeeEEEEEEEEec-ccccceeccCceEEEEecccCccCcccceEEe
Q psy5021 881 NGEEIEIVGYKQTIKTTITGIEMF-KKTLDEGLAGENVGILLRSVKREEVERGQVLA 936 (1021)
Q Consensus 881 ~gd~v~i~p~~~~~~~~Vksi~~~-~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 936 (1021)
+||.+.++|. .++|+++... +..+.+|.||+.|.+. +++ .....||.+.
T Consensus 450 ~GD~vv~g~~----~gkVr~m~~~~~~~v~~a~pgdiV~I~--gl~-~~~~~Gd~l~ 499 (742)
T CHL00189 450 IGDIIVIGTS----YAKIRGMINSLGNKINLATPSSVVEIW--GLS-SVPATGEHFQ 499 (742)
T ss_pred cCCEEEECCc----ceEEEEEEcCCCcCccEEcCCCceEec--Ccc-cCCCCCCEEE
Confidence 9999998862 3789999854 5699999999999763 321 3455688875
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=233.94 Aligned_cols=296 Identities=23% Similarity=0.239 Sum_probs=203.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc---------------cccccCCcccccChHHHhhhCceeeeeeeEEEe
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHK---------------IGEVHHGTTITDWMQQEQERGITITSASVSIFW 70 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~---------------~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~ 70 (1021)
....++..+|++|.|||||+.+||+.+..+-. .|+--+-....|-++.|+|.||||+.++..|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 34567899999999999999999998765422 111111134567789999999999999988888
Q ss_pred ecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEE-EeCcCCCCCCHHHH
Q psy5021 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIF-VNKMDRIGANYNNC 149 (1021)
Q Consensus 71 ~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiv-iNK~D~~~~~~~~~ 149 (1021)
. .+++.+.|||||..|...+..+..-||.||++|||..|+..||+++-..+...+++.+++ +||||+.+.+- +.
T Consensus 84 ~----KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e-~~ 158 (431)
T COG2895 84 E----KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE-EV 158 (431)
T ss_pred c----cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH-HH
Confidence 8 899999999999999999999999999999999999999999999999999999997665 99999976542 12
Q ss_pred HHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy5021 150 IIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYI 229 (1021)
Q Consensus 150 ~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l 229 (1021)
.++|...+ +
T Consensus 159 F~~I~~dy-----------------------------------------------------------------------~ 167 (431)
T COG2895 159 FEAIVADY-----------------------------------------------------------------------L 167 (431)
T ss_pred HHHHHHHH-----------------------------------------------------------------------H
Confidence 22222111 0
Q ss_pred cCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------HHHHHHHHhCCCCccccccCCccccccCCCc
Q psy5021 230 NNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------FLLNSICEYLPSPYDVDFKNNDYNINLNSNK 297 (1021)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p 297 (1021)
++...+- ....-.++.||+.|.++- .||+.+-..-... . ...+|
T Consensus 168 -----------~fa~~L~-~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~-~-----------~~~~~ 223 (431)
T COG2895 168 -----------AFAAQLG-LKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIAD-D-----------RSAKA 223 (431)
T ss_pred -----------HHHHHcC-CCcceEEechhccCCcccccccCCCcccCccHHHHHhhccccc-c-----------ccccc
Confidence 0000000 001123445888887762 2333332111111 0 03455
Q ss_pred eEEEEEEEeecCCCceEE-EEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCC--cccc
Q psy5021 298 FVSLVFKIFHDPFLGSLS-FIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLK--ESST 374 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~-~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~--~~~~ 374 (1021)
|+..|-.+. .|+..+-. -|+|-||++++||+|...+.++..+|++|..+.|. .++|.||+-+.+.=-+ ++..
T Consensus 224 ~RfPVQ~V~-Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~----~~~A~aG~aVtl~L~deidisR 298 (431)
T COG2895 224 FRFPVQYVN-RPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGE----LAQASAGEAVTLVLADEIDISR 298 (431)
T ss_pred eeeceEEec-CCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCc----hhhccCCceEEEEEcceeeccc
Confidence 555554443 22222222 26888999999999999999999999999888654 6789999999986323 3788
Q ss_pred CCeeccCCccccccCCcCCCCeEEEEEEeCCCC
Q psy5021 375 GDTLCSLSENIQLENIETPIPVISISIEPIFKN 407 (1021)
Q Consensus 375 gdtl~~~~~~~~~~~~~~~~Pv~~~~iep~~~~ 407 (1021)
||.|+..+.++. ..-.+..-++.+.=+|-.+.
T Consensus 299 Gd~i~~~~~~~~-~~~~f~A~vvWm~~~pl~pG 330 (431)
T COG2895 299 GDLIVAADAPPA-VADAFDADVVWMDEEPLLPG 330 (431)
T ss_pred CcEEEccCCCcc-hhhhcceeEEEecCCCCCCC
Confidence 999998765543 12233344555555555444
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=269.73 Aligned_cols=269 Identities=24% Similarity=0.348 Sum_probs=206.2
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc-c-ccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG-G-EVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~-~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
..+++++||+|+|||||+++|+.....+.. + .....+++|..+.|+++|+|++.....+++++..++|+|||||.+|.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~ 87 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT 87 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence 457899999999999999999864433221 1 11234578999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc------
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF------ 802 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~------ 802 (1021)
..+..+++.+|++|+|||+.+|...|+++++.++...++| +|+++||||+...+ ++...+++.+.+....+
T Consensus 88 ~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 88 IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP-RIVFVNKMDRIGAD--FFRSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHhCCCceeEEecc
Confidence 9999999999999999999999999999999999999999 77899999998522 23333444443322100
Q ss_pred --------------------------------------------------------------------------------
Q psy5021 803 -------------------------------------------------------------------------------- 802 (1021)
Q Consensus 803 -------------------------------------------------------------------------------- 802 (1021)
T Consensus 165 s~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~ 244 (691)
T PRK12739 165 GAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIR 244 (691)
T ss_pred cccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHH
Confidence
Q ss_pred ----CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC-------------------CCCCCeeEEEEE
Q psy5021 803 ----DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR-------------------ITDKPFLMPIED 859 (1021)
Q Consensus 803 ----~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~-------------------~~~~p~~~~I~~ 859 (1021)
...-+|++..||+++ .|+..|++.|.+++|.|.. ..+.|+...|..
T Consensus 245 ~~~~~~~~~Pv~~gSa~~~-----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK 313 (691)
T PRK12739 245 KATINMEFFPVLCGSAFKN-----------KGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFK 313 (691)
T ss_pred HHHHcCCEEEEEeccccCC-----------ccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEE
Confidence 000123333344433 3678899999999987742 135689999999
Q ss_pred EEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEE
Q psy5021 860 VFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVL 935 (1021)
Q Consensus 860 ~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl 935 (1021)
++..++.|.+..+||.+|+|++||.|.....++ +.+|..|... ..+++++.|||.+++. ++ .+++.||+|
T Consensus 314 ~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~gdtl 387 (691)
T PRK12739 314 IMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGK--KERIGRLLQMHANKREEIKEVYAGDIAAAV--GL--KDTTTGDTL 387 (691)
T ss_pred eeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCc--eEEecceEEEecCCcccccccCCCCEEEEe--CC--CcccCCCEE
Confidence 999999999999999999999999997543232 3455555543 3589999999999887 33 347899999
Q ss_pred eeCC
Q psy5021 936 AKIG 939 (1021)
Q Consensus 936 ~~~~ 939 (1021)
++..
T Consensus 388 ~~~~ 391 (691)
T PRK12739 388 CDEK 391 (691)
T ss_pred eCCC
Confidence 8653
|
|
| >KOG0052|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-26 Score=248.64 Aligned_cols=309 Identities=29% Similarity=0.460 Sum_probs=247.6
Q ss_pred cceeeeeeeeeccchhhhhhhc------------cccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALT------------KVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAH 718 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~------------~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~l 718 (1021)
.+..-+.||.++||||...... ++....+.+.+.+.|.+|+...|+++|++++...+.++.....+++
T Consensus 7 ~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~~i~i 86 (391)
T KOG0052|consen 7 HINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTI 86 (391)
T ss_pred ccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeEEEEE
Confidence 3566778899999999876321 2233444566667788999999999999999999999998999999
Q ss_pred EecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccch---hhHHHH
Q psy5021 719 VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQD---KELLDL 788 (1021)
Q Consensus 719 iDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~---~~~~~~ 788 (1021)
+|.|||.+|.++|+.+..+||+++++|.+..|.+ +|++||+.++..+|+.++++.+||||..+. +.++.+
T Consensus 87 id~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~~r~~e 166 (391)
T KOG0052|consen 87 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARYEE 166 (391)
T ss_pred ecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCccccchhh
Confidence 9999999999999999999999999999955543 899999999999999999999999997652 223332
Q ss_pred HHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCcee
Q psy5021 789 VEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT 868 (1021)
Q Consensus 789 ~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~ 868 (1021)
+.+....+.+..++ +..+. ..++|...|.|
T Consensus 167 i~k~~~~~~~~~g~---------------------------n~~~~----------------------~~~~~~~~g~~- 196 (391)
T KOG0052|consen 167 IKKEVSSYIKKIGY---------------------------NPAAV----------------------LQDVYKIGGIG- 196 (391)
T ss_pred hheeeeeeeecccc---------------------------CChhh----------------------hccceeeccee-
Confidence 22211111111110 11111 44677777777
Q ss_pred EEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC--Cccceee
Q psy5021 869 VVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG--SIKSYNI 946 (1021)
Q Consensus 869 Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~--~~~~~~~ 946 (1021)
+..|.++.++.+...|... +.++++..+++.....+.+|++|+++.+++...++++|+|+.+.. ++.....
T Consensus 197 -----~~t~iie~~~~v~~~~~~~--~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~p~~~~~g 269 (391)
T KOG0052|consen 197 -----VETGISEPGMDVTFAPSGV--TTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKNDPPVEAAG 269 (391)
T ss_pred -----eeeeeccCccceecccccc--ccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccccCCcccccc
Confidence 8899999999998887655 678999999999888999999999999999999999999998754 4567888
Q ss_pred EEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeec-------------cCCCcccccCCCeEEEEEEEceeeeccc
Q psy5021 947 FECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICK-------------LPENVEMVLPGDNIKLNVTLLSSIAIEI 1013 (1021)
Q Consensus 947 f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~g~~~~v~~~~~~pi~~~~ 1013 (1021)
|.+++.+++|+. .|..||.|++.||+++++|++. +.+.++.+++++.+.+...+.+|+|++.
T Consensus 270 ~t~qviilnhpg-----qis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~~ve~ 344 (391)
T KOG0052|consen 270 FTAQVIILNHPG-----QISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPLCVES 344 (391)
T ss_pred ceeeEEEecCcc-----ccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCcccccc
Confidence 999999999983 7999999999999999996541 1346899999999999999999999987
Q ss_pred C------CeEEEeC
Q psy5021 1014 G------LRFAIRE 1021 (1021)
Q Consensus 1014 ~------~rf~lr~ 1021 (1021)
. +||.+|+
T Consensus 345 ~~~~~~l~rfav~d 358 (391)
T KOG0052|consen 345 FSDYVPLGRFAVRD 358 (391)
T ss_pred ccccccccchhhhh
Confidence 6 5777764
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=222.98 Aligned_cols=311 Identities=24% Similarity=0.291 Sum_probs=217.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec--c----------
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV--N---------- 73 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~---------- 73 (1021)
+.--||+.+||+|||||||+.+|. .-++|.+.+|.+|||||+..++...+.. +
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Als---------------GvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~ 72 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALS---------------GVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTE 72 (415)
T ss_pred CcceEeeeeeecccchhhheehhh---------------ceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccC
Confidence 456799999999999999999993 2578899999999999998776443221 0
Q ss_pred ----------cCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-CchhHHHHHHHHhhcCCCEEE-EEeCcCC
Q psy5021 74 ----------KFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-IQPQTETVWFQSQKYKVPKMI-FVNKMDR 141 (1021)
Q Consensus 74 ----------~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-~~~~t~~~~~~~~~~~~p~ii-viNK~D~ 141 (1021)
.--+.+.|+|+|||.-+...+.++....|+|||||+|++. .++||++++..+.-.++.-++ +=||+|+
T Consensus 73 ~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDl 152 (415)
T COG5257 73 PKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDL 152 (415)
T ss_pred CCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccce
Confidence 1125799999999999999999999999999999999986 799999999999888877554 5799998
Q ss_pred CCCC-HHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCC
Q psy5021 142 IGAN-YNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNN 220 (1021)
Q Consensus 142 ~~~~-~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~ 220 (1021)
...+ ..+..++|++.+
T Consensus 153 V~~E~AlE~y~qIk~Fv--------------------------------------------------------------- 169 (415)
T COG5257 153 VSRERALENYEQIKEFV--------------------------------------------------------------- 169 (415)
T ss_pred ecHHHHHHHHHHHHHHh---------------------------------------------------------------
Confidence 6322 111222222211
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEE
Q psy5021 221 DEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVS 300 (1021)
Q Consensus 221 d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~ 300 (1021)
++ .+ ..-.|++++||.++.+|+.|+++|.+++|.|... .+.|+++
T Consensus 170 ---------kG-------------t~--Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd-----------~~~~p~m 214 (415)
T COG5257 170 ---------KG-------------TV--AENAPIIPISAQHKANIDALIEAIEKYIPTPERD-----------LDKPPRM 214 (415)
T ss_pred ---------cc-------------cc--cCCCceeeehhhhccCHHHHHHHHHHhCCCCccC-----------CCCCceE
Confidence 11 00 0124788889999999999999999999999865 6789999
Q ss_pred EEEEEeecCC--------CceEEEEEEEeeEEecCCEEEeCCC------cee---eEeceEEEeecCCeeccccccCCCE
Q psy5021 301 LVFKIFHDPF--------LGSLSFIRIYSGFIKVGDLVYNSTK------KVK---EKIFRILRMFANSKKDINDAHFGDI 363 (1021)
Q Consensus 301 ~V~k~~~~~~--------~g~~~~~RV~sG~l~~gd~v~~~~~------~~~---~~i~~i~~~~g~~~~~v~~a~aGdI 363 (1021)
||.+.|.... .|-+.-+-+..|.|+.||.+-..+. ++. --.+++..+++.. ..+++|.+|-.
T Consensus 215 ~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~-~~~~ea~PGGL 293 (415)
T COG5257 215 YVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGG-EDVEEARPGGL 293 (415)
T ss_pred EEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCC-eeeeeccCCce
Confidence 9999985332 3557888999999999999985432 111 1133455555543 57999999999
Q ss_pred EEE-ecCCc-cccCCeeccCCccccccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEe
Q psy5021 364 VVI-VGLKE-SSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSG 441 (1021)
Q Consensus 364 v~i-~gl~~-~~~gdtl~~~~~~~~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g 441 (1021)
+++ ++|+- +.++|-|...-.- .+-..|+...++.+|. .-|.++.-.+-.++++. -.++|.++..
T Consensus 294 vgvGT~lDP~ltKaD~L~G~V~G---~pG~lPpv~~~~~ie~----------~LL~RvvG~~~e~kvep-ik~~E~Lml~ 359 (415)
T COG5257 294 VGVGTKLDPTLTKADALVGQVVG---KPGTLPPVWTSIRIEY----------HLLERVVGTKEELKVEP-IKTNEVLMLN 359 (415)
T ss_pred EEEecccCcchhhhhhhcccccc---CCCCCCCceEEEEEEe----------eehhhhhCccccccccc-ccCCCeEEEE
Confidence 999 67765 4556665442110 1112233344555553 12344444444555542 3577777665
Q ss_pred cCh
Q psy5021 442 MGE 444 (1021)
Q Consensus 442 ~Ge 444 (1021)
.|.
T Consensus 360 VGt 362 (415)
T COG5257 360 VGT 362 (415)
T ss_pred eec
Confidence 553
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-26 Score=233.28 Aligned_cols=179 Identities=42% Similarity=0.627 Sum_probs=152.6
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccccccc--ccccccCCchhhhhcCceEeeeEEEEe--eCCeEEEEEecCChhh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEV--RAFDTIDNAPEEKERGITISTSHVEYE--SENKHYAHVDCPGHAD 726 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~--~~~~~~d~~~~e~~~G~Ti~~~~~~~~--~~~~~i~liDtpG~~~ 726 (1021)
..++++.|+++||||||+++|+........... ...+.++.+++|+++|+|++.....++ ..++.++|+|||||.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 457899999999999999999976644433211 112347899999999999999999999 8999999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHH-HhhhccccCC-
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIR-ELLTEYDFDG- 804 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~-~~l~~~~~~~- 804 (1021)
|.+++..++..+|++|+|||+.+|...|+++++.++..+++| +|||+||||+. +.+++...+++. .+++.+++..
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~--~~~~~~~~~~~~~~l~~~~~~~~~ 159 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI--EKELEEIIEEIKEKLLKEYGENGE 159 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS--HHHHHHHHHHHHHHHHHHTTSTTT
T ss_pred eeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch--hhhHHHHHHHHHHHhccccccCcc
Confidence 999999999999999999999999999999999999999999 99999999998 344556666666 6667787765
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
..++++|+||++|. |++.|+++|.+++|
T Consensus 160 ~~~~vi~~Sa~~g~-----------gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 160 EIVPVIPISALTGD-----------GIDELLEALVELLP 187 (188)
T ss_dssp STEEEEEEBTTTTB-----------THHHHHHHHHHHS-
T ss_pred ccceEEEEecCCCC-----------CHHHHHHHHHHhCc
Confidence 47899999999884 89999999998876
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=252.39 Aligned_cols=269 Identities=26% Similarity=0.367 Sum_probs=204.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc-cc-----cccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GE-----VRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~-----~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
..+.+++||+++|||||+++|+.....+.. +. ......+|..+.|+++|+|+......+++++..+++||||||
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 458899999999999999999754333221 11 112234688999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc----
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY---- 800 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~---- 800 (1021)
.+|...+..+++.+|++|+|+|+++|...+++.++..+...++| +++++||+|+.... ...+..++++.+..-
T Consensus 90 ~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~--~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 90 EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDGRE--PLELLDEIEEVLGIACAPI 166 (526)
T ss_pred hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcccccC--HHHHHHHHHHHhCCCCeeE
Confidence 99999999999999999999999999999999999999999999 88999999986521 111222222221100
Q ss_pred ----------------------cc------------------------------------------------------CC
Q psy5021 801 ----------------------DF------------------------------------------------------DG 804 (1021)
Q Consensus 801 ----------------------~~------------------------------------------------------~~ 804 (1021)
.| ..
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~ 246 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAG 246 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcC
Confidence 00 01
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC---------CCCCCeeEEEEEEE---eeCCceeEEEE
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR---------ITDKPFLMPIEDVF---SISGRGTVVTG 872 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~---------~~~~p~~~~I~~~~---~v~g~G~Vv~G 872 (1021)
.-+|++..||.++. |+..||+.+.+++|.|.. +.+.+|...|..+. ..+..|.+...
T Consensus 247 ~~~PV~~GSA~~n~-----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafv 315 (526)
T PRK00741 247 ELTPVFFGSALNNF-----------GVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFV 315 (526)
T ss_pred CeEEEEEeecccCc-----------CHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEE
Confidence 12567777887663 899999999999988742 12346777777776 34578999999
Q ss_pred EEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 873 KIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 873 ~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
||.||+++.|+.|.....++. .++..+... ...+++|.|||.+++. +..+++.||+||+.+
T Consensus 316 RV~sG~l~~g~~v~~~~~~k~--~ri~~~~~~~g~~~~~v~~a~aGDIv~v~----~l~~~~~GDTL~~~~ 380 (526)
T PRK00741 316 RVCSGKFEKGMKVRHVRTGKD--VRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 380 (526)
T ss_pred EEeccEECCCCEEEeccCCce--EEecceEEEecCCceECceeCCCCEEEEE----CCCCCccCCCccCCC
Confidence 999999999999987644433 445444332 3589999999998776 256789999998654
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=264.66 Aligned_cols=275 Identities=24% Similarity=0.316 Sum_probs=204.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccc-ccc-ccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-RAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
.+++++||+|+|||||+++|+.....+.. +.. ...+.+|..+.|+++|+|++.....+++++..++|||||||.+|..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 47899999999999999999865444321 111 1236789999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
.+..+++.+|++|+|+|+.+|...|+++++..+...++| +++++||+|+.... ++...+++...+.... ....
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~----~~~~ 163 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVP-RIAFVNKMDKTGAN--FLRVVNQIKQRLGANA----VPIQ 163 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHhCCCc----eeEE
Confidence 999999999999999999999999999999999999999 77899999987522 2333344444332211 0123
Q ss_pred EEecccccccCC----------------------------------------------------------CC--------
Q psy5021 810 VIGSALLALEGK----------------------------------------------------------DD-------- 823 (1021)
Q Consensus 810 i~iSa~~~~~~~----------------------------------------------------------~~-------- 823 (1021)
+|+|+..+..+. ..
T Consensus 164 ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~ 243 (689)
T TIGR00484 164 LPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNA 243 (689)
T ss_pred eccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 444443332110 00
Q ss_pred ----------------CccCcchHHHHHHhhhccCCCCCC-------------------CCCCCeeEEEEEEEeeCCcee
Q psy5021 824 ----------------NQLGTTSIKKLLDVLDSSIPTPNR-------------------ITDKPFLMPIEDVFSISGRGT 868 (1021)
Q Consensus 824 ----------------~~~~~~~i~~Ll~~l~~~l~~~~~-------------------~~~~p~~~~I~~~~~v~g~G~ 868 (1021)
......|+..|++.|.+++|.|.. ..+.|+...|.+++..++.|.
T Consensus 244 l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ 323 (689)
T TIGR00484 244 IRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQ 323 (689)
T ss_pred HHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCe
Confidence 000113678999999999987742 124689999999999999999
Q ss_pred EEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 869 VVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 869 Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
+..+||.+|+|+.||.|+..-.++ +.+|..|... ..+++++.|||.+++. + ..+++.|++|++..
T Consensus 324 i~~~RV~sGtL~~g~~v~~~~~~~--~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~gdtl~~~~ 392 (689)
T TIGR00484 324 LTFVRVYSGVLKSGSYVKNSRKNK--KERVGRLVKMHANNREEIKEVRAGDICAAI--G--LKDTTTGDTLCDPK 392 (689)
T ss_pred EEEEEEEEeEEcCCCEEEeCCCCc--eEEecceEEeecCCcccccccCCCCEEEEc--C--CCCCCCCCEEeCCC
Confidence 999999999999999998642222 2345455443 3589999999999884 3 34568899998643
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-26 Score=231.88 Aligned_cols=333 Identities=27% Similarity=0.405 Sum_probs=255.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEE-----e--------------
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEY-----E-------------- 710 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~-----~-------------- 710 (1021)
..+.+|..||+.|||||+++++.+.. +-+.+.|-+|.+|+...+..- +
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~-------------TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~g 103 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVH-------------TVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFG 103 (466)
T ss_pred eeeeecceeccccCcceeeeeeccce-------------EEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccC
Confidence 35778999999999999999998743 245677888888888775321 0
Q ss_pred ----------e---C-----CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEE
Q psy5021 711 ----------S---E-----NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVD-GPMPQTREHILLARQVGVPNIV 771 (1021)
Q Consensus 711 ----------~---~-----~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~-g~~~qt~e~l~~~~~~~ip~iI 771 (1021)
. . -+++.|+|+|||.-.+.+|++++...|+|+|++.+++ .+++||.||+.....+..++++
T Consensus 104 S~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhii 183 (466)
T KOG0466|consen 104 SSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHII 183 (466)
T ss_pred CCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEE
Confidence 0 0 1678899999999999999999999999999999987 4689999999999999999999
Q ss_pred EEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCC
Q psy5021 772 VFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDK 851 (1021)
Q Consensus 772 vviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~ 851 (1021)
++.||+|++..++.. +..++++.|++... .+..|++|+||.-+ +|++.+.++|.+.+|.|.|+...
T Consensus 184 ilQNKiDli~e~~A~-eq~e~I~kFi~~t~--ae~aPiiPisAQlk-----------yNId~v~eyivkkIPvPvRdf~s 249 (466)
T KOG0466|consen 184 ILQNKIDLIKESQAL-EQHEQIQKFIQGTV--AEGAPIIPISAQLK-----------YNIDVVCEYIVKKIPVPVRDFTS 249 (466)
T ss_pred EEechhhhhhHHHHH-HHHHHHHHHHhccc--cCCCceeeehhhhc-----------cChHHHHHHHHhcCCCCccccCC
Confidence 999999999743333 33456777766543 35679999999866 59999999999999999999999
Q ss_pred CeeEEEEEEEeeCCc--------eeEEEEEEEEEEeeCCCEEEEeec-------CC----eeEEEEEEEEecccccceec
Q psy5021 852 PFLMPIEDVFSISGR--------GTVVTGKIERGIVKNGEEIEIVGY-------KQ----TIKTTITGIEMFKKTLDEGL 912 (1021)
Q Consensus 852 p~~~~I~~~~~v~g~--------G~Vv~G~V~~G~l~~gd~v~i~p~-------~~----~~~~~Vksi~~~~~~~~~a~ 912 (1021)
|.++.|-+.|.+..- |-|+.|.+..|.+++||++.+-|. ++ .+.+++.|+...+.+++.|.
T Consensus 250 ~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~Av 329 (466)
T KOG0466|consen 250 PPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAV 329 (466)
T ss_pred CCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeec
Confidence 999999999998753 568999999999999999999872 11 22356778888888999999
Q ss_pred cCceEEEEec---ccCccCcccceEEeeCCC-ccceeeEEEEEEEeecc---------CCCCCccccCCCEEEEEEeece
Q psy5021 913 AGENVGILLR---SVKREEVERGQVLAKIGS-IKSYNIFECEVYILSKE---------EGGRHTPFFNGYKPQFYFRTTD 979 (1021)
Q Consensus 913 ~G~~v~l~l~---~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~---------~~~~~~~i~~G~~~~~~~~~~~ 979 (1021)
||..+|+.-+ .+...|--.|.|+...+. |..+.+++...++|..- ++.....+.+|-..++.+++..
T Consensus 330 PGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~s 409 (466)
T KOG0466|consen 330 PGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGSTS 409 (466)
T ss_pred CCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCcEEEEEecccc
Confidence 9999988643 223455566888887775 66788888877766522 1111245677777788777655
Q ss_pred eeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEE
Q psy5021 980 VTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFA 1018 (1021)
Q Consensus 980 ~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~ 1018 (1021)
.-+++.-.+ +| .+++.+..|+|-+.|.+..
T Consensus 410 TG~~v~~vk-------~d--~~k~~Lt~P~CteigEkiA 439 (466)
T KOG0466|consen 410 TGGRVSAVK-------AD--MAKIQLTSPVCTEIGEKIA 439 (466)
T ss_pred cCceEEEEe-------cc--eeeeEecCchhcccchhhh
Confidence 444332111 12 4678888999998885443
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=249.72 Aligned_cols=270 Identities=24% Similarity=0.338 Sum_probs=203.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc-ccc-----ccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-----RAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG 723 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-----~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG 723 (1021)
+..+.+++||+++|||||+++|+.....+.. +.. ...+.+|..+.|+++|+|+......+++.+..++||||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 3468899999999999999999754333321 111 1235679999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc--
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD-- 801 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~-- 801 (1021)
|.+|...+..+++.+|++|+|||+.++...+++.++..+...++| +|+++||+|+.... .+.+.+++++.+...-
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~--~~~ll~~i~~~l~~~~~~ 166 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD--PLELLDEVENELKINCAP 166 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccCCC--HHHHHHHHHHHhCCCCcc
Confidence 999999999999999999999999999999999999999888999 88999999986411 2222333333322110
Q ss_pred ------------------------c------------------------------------------------------C
Q psy5021 802 ------------------------F------------------------------------------------------D 803 (1021)
Q Consensus 802 ------------------------~------------------------------------------------------~ 803 (1021)
| .
T Consensus 167 ~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 246 (527)
T TIGR00503 167 ITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHG 246 (527)
T ss_pred EEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhc
Confidence 0 0
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC---------CCCCeeEEEEEEEe--e-CCceeEEE
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI---------TDKPFLMPIEDVFS--I-SGRGTVVT 871 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~---------~~~p~~~~I~~~~~--v-~g~G~Vv~ 871 (1021)
..-+|+++.||.++ .|+..||+.+.+++|.|... .+.+|...|..+.. . +..|.+..
T Consensus 247 ~~~~PV~~GSA~~n-----------~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf 315 (527)
T TIGR00503 247 GEMTPVFFGTALGN-----------FGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAF 315 (527)
T ss_pred CCeeEEEEeecccC-----------ccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEE
Confidence 01134455555554 38899999999999888431 24577777777765 4 47899999
Q ss_pred EEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 872 GKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 872 G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
.||.||+++.|++|+....++ +.++..+... ..++++|.|||.+++. +..+++.||+||+..
T Consensus 316 ~RV~sG~l~~g~~v~~~~~~k--~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~----~~~~~~~GDtl~~~~ 381 (527)
T TIGR00503 316 MRVVSGKYEKGMKLKHVRTGK--DVVISDALTFMAGDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 381 (527)
T ss_pred EEEeeeEEcCCCEEEecCCCC--cEEecchhhhhcCCceEcceeCCCCEEEEE----CCCCcccCCEecCCC
Confidence 999999999999998764333 3455555433 3589999999998776 256789999998743
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=239.13 Aligned_cols=234 Identities=30% Similarity=0.353 Sum_probs=187.4
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCChhhhH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~~~~~ 728 (1021)
|.-.+-+.||++||||||+++|.+.... .+ ...|+|..++.+.+.. +++.++|+|||||..|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VA--A~--------------E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~ 215 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVA--AG--------------EAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFS 215 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCcee--hh--------------hcCCccceeceEEEecCCCCEEEEecCCcHHHHH
Confidence 6677788999999999999999874321 11 2348898888776654 56899999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh---hhccccCCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL---LTEYDFDGE 805 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~---l~~~~~~~~ 805 (1021)
.+..+|+..+|+++|||.|++|+.+||.|.+..++..++| +||++||+|..+.+ .+.+..++... ++.+| .
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~G---G 289 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVP-IVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLG---G 289 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcC---C
Confidence 9999999999999999999999999999999999999999 99999999987622 23333333322 23333 3
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc--CCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS--IPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGE 883 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~--l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd 883 (1021)
++.++|+||++| +|++.|.+++.-. +-.-+.....|+...|-+..-.+|+|.+++-.|..|+|++|+
T Consensus 290 dVQvipiSAl~g-----------~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~ 358 (683)
T KOG1145|consen 290 DVQVIPISALTG-----------ENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGS 358 (683)
T ss_pred ceeEEEeecccC-----------CChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEecccccccc
Confidence 689999999988 4788877776431 111223357789999999999999999999999999999999
Q ss_pred EEEEeecCCeeEEEEEEEEecc-cccceeccCceEEEE
Q psy5021 884 EIEIVGYKQTIKTTITGIEMFK-KTLDEGLAGENVGIL 920 (1021)
Q Consensus 884 ~v~i~p~~~~~~~~Vksi~~~~-~~~~~a~~G~~v~l~ 920 (1021)
-+..+ ..+ ++|+++.-++ .++++|.|++.|.+.
T Consensus 359 vlV~G--~~w--~KVr~l~D~nGk~i~~A~Ps~pv~V~ 392 (683)
T KOG1145|consen 359 VLVAG--KSW--CKVRALFDHNGKPIDEATPSQPVEVL 392 (683)
T ss_pred EEEEe--chh--hhhhhhhhcCCCCccccCCCCceEee
Confidence 88876 344 6799988765 599999999998875
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=262.26 Aligned_cols=265 Identities=29% Similarity=0.443 Sum_probs=207.0
Q ss_pred eeeeeccchhhhhhhccccccccc-ccc-ccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHH
Q psy5021 657 IGHVDHGKTTLTAALTKVSSEIYG-GEV-RAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITG 734 (1021)
Q Consensus 657 ~g~~~~GKSTLi~~L~~~~~~~~~-~~~-~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~ 734 (1021)
+||+|||||||+++|+...+.+.. +.. ...+++|....|+++|+|+......+.+.+..++|||||||.+|...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 488999999999999766544332 111 123578999999999999999999999999999999999999999999999
Q ss_pred hhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc---------------
Q psy5021 735 AAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE--------------- 799 (1021)
Q Consensus 735 ~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~--------------- 799 (1021)
+..+|++++|+|++.+...++..++..+...++| +++++||+|+.... .+...+++.+.+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~--~~~~~~~l~~~l~~~~~~~~~p~~~~~~~ 157 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGAD--FFRVLAQLQEKLGAPVVPLQLPIGEGDDF 157 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHHCCCceeEEecccCCCCc
Confidence 9999999999999999999999999999999999 77899999987421 22222333322110
Q ss_pred ----------------------------------------------------------cc--------------cCCCce
Q psy5021 800 ----------------------------------------------------------YD--------------FDGENT 807 (1021)
Q Consensus 800 ----------------------------------------------------------~~--------------~~~~~~ 807 (1021)
.. ....-+
T Consensus 158 ~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 158 TGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred eEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 00 001135
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC-----------------CCCCCeeEEEEEEEeeCCceeEE
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR-----------------ITDKPFLMPIEDVFSISGRGTVV 870 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~-----------------~~~~p~~~~I~~~~~v~g~G~Vv 870 (1021)
|++..||++|. |++.|++.+.+++|.|.. ..+.|+.+.|.+++..++.|.++
T Consensus 238 Pv~~gSA~~~~-----------Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~ 306 (668)
T PRK12740 238 PVFCGSALKNK-----------GVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLS 306 (668)
T ss_pred EEEeccccCCc-----------cHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEE
Confidence 67778888773 899999999999988842 23568999999999999999999
Q ss_pred EEEEEEEEeeCCCEEEEeecCCeeE-EEEEEEEe-cccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 871 TGKIERGIVKNGEEIEIVGYKQTIK-TTITGIEM-FKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 871 ~G~V~~G~l~~gd~v~i~p~~~~~~-~~Vksi~~-~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
.++|.+|+|++||+|.+.+.++..+ .++..++. ...++++|.|||.+++. ++ .+++.|++|++..
T Consensus 307 ~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--gl--~~~~~Gdtl~~~~ 373 (668)
T PRK12740 307 LVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA--KL--KDAATGDTLCDKG 373 (668)
T ss_pred EEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe--cc--CccCCCCEEeCCC
Confidence 9999999999999999987543322 24445553 35689999999999987 43 4689999998543
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-24 Score=252.13 Aligned_cols=270 Identities=27% Similarity=0.414 Sum_probs=207.7
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc-ccc-ccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-RAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHAD 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~ 726 (1021)
+.-+.|+++|.+||||||..+|+...+.+.. |.. ...+++|....|++||+|+..+..++.|++ +.++|||||||-|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 4457899999999999999999865554442 222 234578999999999999999999999996 9999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc------
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY------ 800 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~------ 800 (1021)
|...+.++++.+|+|++|+||.+|+.+||+..|+++...++| .|+++||||....+ +....+++...+...
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~--~~~~~~~l~~~l~~~~~~v~~ 165 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVP-RILFVNKMDRLGAD--FYLVVEQLKERLGANPVPVQL 165 (697)
T ss_pred cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCC-eEEEEECccccccC--hhhhHHHHHHHhCCCceeeec
Confidence 999999999999999999999999999999999999999999 67788999987522 222333333333220
Q ss_pred --c------------------cC-CC------------------------------------------------------
Q psy5021 801 --D------------------FD-GE------------------------------------------------------ 805 (1021)
Q Consensus 801 --~------------------~~-~~------------------------------------------------------ 805 (1021)
+ |. ..
T Consensus 166 pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~ 245 (697)
T COG0480 166 PIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRK 245 (697)
T ss_pred cccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHH
Confidence 0 00 00
Q ss_pred ------ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC--------------------CCCCeeEEEEE
Q psy5021 806 ------NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI--------------------TDKPFLMPIED 859 (1021)
Q Consensus 806 ------~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~--------------------~~~p~~~~I~~ 859 (1021)
..|.++-||..+ .++..||+++.+++|.|.+. .+.|+.+.+..
T Consensus 246 ~~~~~~~~pvl~gsa~kn-----------~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfK 314 (697)
T COG0480 246 GTIAGKIVPVLCGSAFKN-----------KGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFK 314 (697)
T ss_pred hhhccceeeEEeeecccC-----------CcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEE
Confidence 011222222211 36788999999999987321 26799999999
Q ss_pred EEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc----cccceeccCceEEEEecccCccCcccceEE
Q psy5021 860 VFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK----KTLDEGLAGENVGILLRSVKREEVERGQVL 935 (1021)
Q Consensus 860 ~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~----~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl 935 (1021)
+...+..|.+..+||.||+|++||.++.... ..+.+|-.|...+ .+++++.||+.+++. + .++...|+++
T Consensus 315 i~~d~~~g~l~~~RvysGtl~~G~~v~n~~~--~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~--G--l~~~~tGdTl 388 (697)
T COG0480 315 IMTDPFVGKLTFVRVYSGTLKSGSEVLNSTK--GKKERVGRLLLMHGNEREEVDEVPAGDIVALV--G--LKDATTGDTL 388 (697)
T ss_pred eEecCCCCeEEEEEEeccEEcCCCEEEeCCC--CccEEEEEEEEccCCceeecccccCccEEEEE--c--ccccccCCee
Confidence 9999999999999999999999998887643 3346676766543 489999999999776 2 3445899999
Q ss_pred eeCC
Q psy5021 936 AKIG 939 (1021)
Q Consensus 936 ~~~~ 939 (1021)
|+.+
T Consensus 389 ~~~~ 392 (697)
T COG0480 389 CDEN 392 (697)
T ss_pred ecCC
Confidence 9655
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=246.25 Aligned_cols=291 Identities=21% Similarity=0.266 Sum_probs=184.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc-------------
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN------------- 73 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~------------- 73 (1021)
+..-|+|+||+|||||||+++|....-....+| |+|.+.....+.+...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~g------------------giTq~iG~~~v~~~~~~~~~~~~~~~~~v 64 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAG------------------GITQHIGATEIPMDVIEGICGDLLKKFKI 64 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCC------------------ceecccCeeEeeecccccccccccccccc
Confidence 345799999999999999999975433222222 2332222222222110
Q ss_pred -cCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHH
Q psy5021 74 -KFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIID 152 (1021)
Q Consensus 74 -~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~ 152 (1021)
.+...++|||||||.+|...+.++++.+|++++|+|+++|+..++.+.++.+...++|+++++||+|+... +
T Consensus 65 ~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~-~------ 137 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPG-W------ 137 (590)
T ss_pred ccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccch-h------
Confidence 00124899999999999999999999999999999999999999999999999899999999999998531 0
Q ss_pred HHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCC
Q psy5021 153 IKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN 232 (1021)
Q Consensus 153 i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~ 232 (1021)
....+.. +.+. ...-+........+....+...+++. .
T Consensus 138 -~~~~~~~-------f~e~-----------------------sak~~~~v~~~~~~~~~~lv~~l~~~-----------G 175 (590)
T TIGR00491 138 -RSHEGRP-------FMES-----------------------FSKQEIQVQQNLDTKVYNLVIKLHEE-----------G 175 (590)
T ss_pred -hhccCch-------HHHH-----------------------HHhhhHHHHHHHHHHHHHHHHHHHhc-----------C
Confidence 0000000 0000 00000000000011111111111111 1
Q ss_pred CCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHh----CCCCccccccCCccccccCCCceEEEEEEEeec
Q psy5021 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEY----LPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHD 308 (1021)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~----lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 308 (1021)
+..+.+.. +. ..+..+|++++||++|.|+++|+++|..+ ++....++ +++|+.+.|..++.+
T Consensus 176 ~~~e~~~~-i~---~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~----------~~~~~~~~V~e~~~~ 241 (590)
T TIGR00491 176 FEAERFDR-VT---DFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLE----------EEGPARGTILEVKEE 241 (590)
T ss_pred ccHHhhhh-hh---hcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccC----------CCCCeEEEEEEEEEc
Confidence 22221111 11 12345789999999999999999998643 33222211 568999999999999
Q ss_pred CCCceEEEEEEEeeEEecCCEEEeCCCce--eeEeceEEEeec--------CCeecccccc--CCCEEEEecCCccccCC
Q psy5021 309 PFLGSLSFIRIYSGFIKVGDLVYNSTKKV--KEKIFRILRMFA--------NSKKDINDAH--FGDIVVIVGLKESSTGD 376 (1021)
Q Consensus 309 ~~~g~~~~~RV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~g--------~~~~~v~~a~--aGdIv~i~gl~~~~~gd 376 (1021)
++.|.++.++|++|+|+.||.|...+.+. ..+|..|+...+ .....++++. +|--+.+.||+....|+
T Consensus 242 ~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~~~aG~ 321 (590)
T TIGR00491 242 TGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDDVMAGS 321 (590)
T ss_pred CCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCCCCCCC
Confidence 99999999999999999999999877653 457777765542 1234566644 45555567777666665
Q ss_pred ee
Q psy5021 377 TL 378 (1021)
Q Consensus 377 tl 378 (1021)
.+
T Consensus 322 ~~ 323 (590)
T TIGR00491 322 PI 323 (590)
T ss_pred EE
Confidence 54
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-24 Score=260.23 Aligned_cols=269 Identities=29% Similarity=0.423 Sum_probs=208.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc-ccc-ccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-RAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
..+++++|+.++|||||+++|+.....+.. +.. ...+.+|..+.|+++|+|+......+++.+..++|||||||.+|.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 457899999999999999999865432221 111 123467889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc--------
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY-------- 800 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~-------- 800 (1021)
..+..+++.+|++++|+|++++...++.++|..+...++| +++++||+|+...+ ++...++++..+...
T Consensus 88 ~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~~P~ 164 (687)
T PRK13351 88 GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP-RLIFINKMDRVGAD--LFKVLEDIEERFGKRPLPLQLPI 164 (687)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHHCCCeEEEEecc
Confidence 9999999999999999999999999999999999999999 78899999987521 222223333222110
Q ss_pred ------------------cc------------------------------------------------------------
Q psy5021 801 ------------------DF------------------------------------------------------------ 802 (1021)
Q Consensus 801 ------------------~~------------------------------------------------------------ 802 (1021)
.|
T Consensus 165 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~ 244 (687)
T PRK13351 165 GSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLR 244 (687)
T ss_pred ccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 00
Q ss_pred ----CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC------------------CCCCCeeEEEEEE
Q psy5021 803 ----DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR------------------ITDKPFLMPIEDV 860 (1021)
Q Consensus 803 ----~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~------------------~~~~p~~~~I~~~ 860 (1021)
...-+|++..||+++. |++.|++.|.+++|.|.. ..+.|+.+.|.++
T Consensus 245 ~~~~~~~~~PV~~gSA~~~~-----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~ 313 (687)
T PRK13351 245 EGTRSGHLVPVLFGSALKNI-----------GIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKV 313 (687)
T ss_pred HHHHhCCEEEEEecccCcCc-----------cHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEe
Confidence 0112566667888763 889999999999988753 2356899999999
Q ss_pred EeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEe
Q psy5021 861 FSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLA 936 (1021)
Q Consensus 861 ~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 936 (1021)
+..++.|.++.+||.+|+|++||+|++.+.++. .+|..|... ..++++|.|||.+++. + .+++..|++|+
T Consensus 314 ~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~--~~i~~i~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~gdtl~ 387 (687)
T PRK13351 314 QYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKR--EKVGRLFRLQGNKREEVDRAKAGDIVAVA--G--LKELETGDTLH 387 (687)
T ss_pred eecCCCceEEEEEEeEEEEcCCCEEEeCCCCCc--eEeeeEEEEccCCeeECCccCCCCEEEEE--C--cccCccCCEEe
Confidence 999999999999999999999999998764433 344455443 3689999999998664 4 33567899998
Q ss_pred eCC
Q psy5021 937 KIG 939 (1021)
Q Consensus 937 ~~~ 939 (1021)
+..
T Consensus 388 ~~~ 390 (687)
T PRK13351 388 DSA 390 (687)
T ss_pred CCC
Confidence 643
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=240.87 Aligned_cols=235 Identities=31% Similarity=0.361 Sum_probs=185.5
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCCh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGH 724 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~ 724 (1021)
.+|+..+..+||++||||||++.+-+.. +. .....|+|.......+..+ ...++|+|||||
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~--Va--------------~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH 65 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTN--VA--------------AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH 65 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCc--cc--------------cccCCceeeEeeeEEEEeccCCCceEEEEcCCcH
Confidence 3577788899999999999999998733 11 2223588999999988874 478999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC-
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD- 803 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~- 803 (1021)
+.|..+.-+|+.-+|+++||||+++|..+||.|-+..++..++| +||++||||..+.+ .+.+..++++. |+.
T Consensus 66 eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~n--p~~v~~el~~~----gl~~ 138 (509)
T COG0532 66 EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKIDKPEAN--PDKVKQELQEY----GLVP 138 (509)
T ss_pred HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCC-EEEEEecccCCCCC--HHHHHHHHHHc----CCCH
Confidence 99999999999999999999999999999999999999999999 99999999998632 23333444332 332
Q ss_pred ---CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC--CCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEE
Q psy5021 804 ---GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP--TPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGI 878 (1021)
Q Consensus 804 ---~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~--~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~ 878 (1021)
+..+.++|+||++| +|+++||+.+.-... .-+...+.+.+..|-++...+|.|.+++-.|.+|+
T Consensus 139 E~~gg~v~~VpvSA~tg-----------~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~Gt 207 (509)
T COG0532 139 EEWGGDVIFVPVSAKTG-----------EGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGT 207 (509)
T ss_pred hhcCCceEEEEeeccCC-----------CCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCe
Confidence 23478999999998 489999988753211 22334578899999999999999999999999999
Q ss_pred eeCCCEEEEeecCCeeEEEEEEEEec-ccccceeccCceEEEE
Q psy5021 879 VKNGEEIEIVGYKQTIKTTITGIEMF-KKTLDEGLAGENVGIL 920 (1021)
Q Consensus 879 l~~gd~v~i~p~~~~~~~~Vksi~~~-~~~~~~a~~G~~v~l~ 920 (1021)
|++||.+.++... .+|+.+... ..+++.+.++..+.+.
T Consensus 208 L~~GD~iv~g~~~----g~I~t~v~~~~~~i~~a~ps~~v~i~ 246 (509)
T COG0532 208 LKKGDIIVAGGEY----GRVRTMVDDLGKPIKEAGPSKPVEIL 246 (509)
T ss_pred EecCCEEEEccCC----CceEEeehhcCCCccccCCCCCeEEe
Confidence 9999999997533 345554443 4577777777555443
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=219.29 Aligned_cols=142 Identities=36% Similarity=0.593 Sum_probs=119.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDtPG~ 87 (1021)
|||+++||+|+|||||+++|++..+.+...+ ....+.|+.+.|+++|+|.......+.|.. ++.++.++|||||||
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 77 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE---MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH 77 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC---CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC
Confidence 8999999999999999999998877765422 124678999999999999998888877743 455788999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHH
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDI 153 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i 153 (1021)
.+|...+..+++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..+..+++
T Consensus 78 ~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~ 143 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQI 143 (179)
T ss_pred hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHH
Confidence 999999999999999999999999998888888888877789999999999998654433333333
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=229.62 Aligned_cols=190 Identities=34% Similarity=0.466 Sum_probs=158.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccc---------------cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEE
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYG---------------GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYA 717 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~---------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~ 717 (1021)
+++++||++||||||+++|+.....+.. ..++..+++|....|+++|+|++.....+++.+..++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4688999999999999999865443321 1112224789999999999999999999999999999
Q ss_pred EEecCChhhhHHHHHHHhhhCCEEEEEEECCC-------CCcHHHHHHHHHHHHcCCCeEEEEEeeccccc---hhhHHH
Q psy5021 718 HVDCPGHADYIKNMITGAAQMDGAILVCSAVD-------GPMPQTREHILLARQVGVPNIVVFLNKADCVQ---DKELLD 787 (1021)
Q Consensus 718 liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~-------g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~~~~ 787 (1021)
|||||||.+|.+.+..++..+|++|+|||+++ +...|+.+++.++..++++++||++||||+.. ++..++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 45678999999888888777999999999973 245577
Q ss_pred HHHHHHHHhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccC
Q psy5021 788 LVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 788 ~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+.+++..+++.+++...+++++++||++|.+..+. ....|+..++|+++|....
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~~~w~~g~~l~~~l~~~~ 216 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPWYKGPTLLEALDSLE 216 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCCCCCccCCcHHHHHhCCC
Confidence 788888888888888766789999999999766544 3567888899999998753
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-25 Score=230.85 Aligned_cols=131 Identities=33% Similarity=0.449 Sum_probs=116.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccc--ccc-----CCc------ccccChHHHhhhCceeeeeeeEEEeecccCc
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIG--EVH-----HGT------TITDWMQQEQERGITITSASVSIFWEVNKFK 76 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g--~~~-----~~~------~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~ 76 (1021)
||+++||+|||||||+++|++..|.+.+.+ +++ .|. +++|+.++|++||+|++.....+.|. +
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----~ 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----K 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC----C
Confidence 799999999999999999999999987655 222 333 38999999999999999999999998 8
Q ss_pred eeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCC-------CCchhHHHHHHHHhhcC-CCEEEEEeCcCCCCC
Q psy5021 77 YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASS-------GIQPQTETVWFQSQKYK-VPKMIFVNKMDRIGA 144 (1021)
Q Consensus 77 ~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~-------g~~~~t~~~~~~~~~~~-~p~iiviNK~D~~~~ 144 (1021)
+.+++||||||.+|...+..+++.+|++|+|||+++ +...++.+++..+...+ .|+++|+||+|+..+
T Consensus 77 ~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 77 YRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred eEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 999999999999999999999999999999999998 56778999998887777 467889999999743
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=220.46 Aligned_cols=251 Identities=20% Similarity=0.236 Sum_probs=200.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----ccCceeEEEEc
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-----NKFKYMINIID 83 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-----~~~~~~i~liD 83 (1021)
-|++|+||+|+|||||+.+|... ..+...|.++...+||+|.+.....+.... .++..+++|+|
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~-----------~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvD 76 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSEL-----------GSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVD 76 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhh-----------ccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEe
Confidence 79999999999999999999531 124567888899999999998776655433 35567899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCH-HHHHHHHHHHhCCcee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANY-NNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~-~~~~~~i~~~l~~~~~ 162 (1021)
+|||...+..++.+....|..++|||+..|.+.||.+++-.........++|+||+|....+. ...++....
T Consensus 77 CPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~k------- 149 (522)
T KOG0461|consen 77 CPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAK------- 149 (522)
T ss_pred CCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHH-------
Confidence 999999999999999999999999999999999999999888888888999999999753221 111111111
Q ss_pred eeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~ 242 (1021)
.+++.+
T Consensus 150 --------------------------------------------------------------------------k~~KtL 155 (522)
T KOG0461|consen 150 --------------------------------------------------------------------------KVRKTL 155 (522)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 111111
Q ss_pred HHHHhcCceeEEEeccccCc----ccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEE
Q psy5021 243 RKLVLKNKIIPIMCGSSLKN----KGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIR 318 (1021)
Q Consensus 243 ~~~~~~~~~~Pv~~~Sa~~~----~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~R 318 (1021)
... -.+...|++.+||..| .++++|.++|.+.+-.|... +.+||.++|...+..++.|++..+.
T Consensus 156 e~t-~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd-----------~~gpflm~vDHCF~IKGQGTV~TGT 223 (522)
T KOG0461|consen 156 EST-GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD-----------EEGPFLMAVDHCFAIKGQGTVLTGT 223 (522)
T ss_pred Hhc-CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC-----------CCCCeEEEeeeeEEeccCceEEeee
Confidence 111 1123478889999999 89999999999888777654 6899999999999999999999999
Q ss_pred EEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe
Q psy5021 319 IYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV 367 (1021)
Q Consensus 319 V~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 367 (1021)
|++|.++.|+.+-.+.-+...||+.+.+. +.+|.+|.+||-.++.
T Consensus 224 vl~G~~~ln~~iE~PAL~e~rkVKslqmf----~~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 224 VLRGVLRLNTEIEFPALNEKRKVKSLQMF----KQRVTSAAAGDRAGFC 268 (522)
T ss_pred EEEeEEecCcEEeecccchhhhhhhHHHH----hhhhhhhhcccceeee
Confidence 99999999999999888877788877443 4568999999998873
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=224.72 Aligned_cols=186 Identities=28% Similarity=0.388 Sum_probs=155.8
Q ss_pred eeeeeeeeccchhhhhhhccccccccc---------------cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEE
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYG---------------GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAH 718 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~---------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~l 718 (1021)
++++||+|+|||||+++|+.....+.. +.....+.+|..+.|+++|+|++.....+++++..+.|
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~l 81 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFII 81 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEE
Confidence 578999999999999999876655441 11233457899999999999999999999999999999
Q ss_pred EecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccch-hhHHHHHHHHHHHhh
Q psy5021 719 VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQD-KELLDLVEMEIRELL 797 (1021)
Q Consensus 719 iDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~-~~~~~~~~~~~~~~l 797 (1021)
||||||++|...+..++..+|++|+|+|++++...++++++.++...+.|++|+|+||+|+.+. +..++.+..++.+++
T Consensus 82 iDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~ 161 (208)
T cd04166 82 ADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFA 161 (208)
T ss_pred EECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888888778889999999752 345666777888888
Q ss_pred hccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhcc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~ 841 (1021)
+.+++. ..+++++||++|.+..+. ....|+..++|+++|+..
T Consensus 162 ~~~~~~--~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~~~~~ 204 (208)
T cd04166 162 AKLGIE--DITFIPISALDGDNVVSRSENMPWYSGPTLLEHLETV 204 (208)
T ss_pred HHcCCC--CceEEEEeCCCCCCCccCCCCCCCCCCCcHHHHHhcC
Confidence 887763 357999999998665443 356788889999999873
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-24 Score=260.24 Aligned_cols=282 Identities=27% Similarity=0.406 Sum_probs=202.2
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEE----EeeCCeEEEEEecCChhh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE----YESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~----~~~~~~~i~liDtpG~~~ 726 (1021)
..+++++||.+||||||+++|+.....+........+++|..++|+++|+|++..... +++.+..++|||||||.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 3588999999999999999998654443322112234579999999999999877654 566788999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccch---------hhHHHHHHHHHHHhh
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQD---------KELLDLVEMEIRELL 797 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~---------~~~~~~~~~~~~~~l 797 (1021)
|...+..+++.+|++|+|+|+.+|...++++++..+...++| .|+++||+|.... .+++..+...+...+
T Consensus 99 f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (720)
T TIGR00490 99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVK-PVLFINKVDRLINELKLTPQELQERFIKIITEVNKLI 177 (720)
T ss_pred cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCC-EEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhhh
Confidence 999999999999999999999999999999999998889999 6789999998631 122233333333333
Q ss_pred hcc-c--------cCCCceEEEEeccccccc---------CCCCCc-------cCcch-------HHHHHHhhhccCCCC
Q psy5021 798 TEY-D--------FDGENTKIVIGSALLALE---------GKDDNQ-------LGTTS-------IKKLLDVLDSSIPTP 845 (1021)
Q Consensus 798 ~~~-~--------~~~~~~~ii~iSa~~~~~---------~~~~~~-------~~~~~-------i~~Ll~~l~~~l~~~ 845 (1021)
... + +..........|++.++. ...... ..... +..|++.+.+++|.|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP 257 (720)
T TIGR00490 178 KAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPSP 257 (720)
T ss_pred hccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCCh
Confidence 221 0 000001111223332210 000000 00001 356889998888887
Q ss_pred CC-------------------------CCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEE
Q psy5021 846 NR-------------------------ITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITG 900 (1021)
Q Consensus 846 ~~-------------------------~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vks 900 (1021)
.. ..+.|+...|.+++..++.|++++|+|.+|+|++||.|.+.+.+. +.+|..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~--~~kv~~ 335 (720)
T TIGR00490 258 IEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKA--KARIQQ 335 (720)
T ss_pred hhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCC--eeEeeE
Confidence 42 124589999999998899999999999999999999999987554 367788
Q ss_pred EEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 901 IEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 901 i~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|... ..+++.|.|||+|++. + ..++.+||+||+++
T Consensus 336 l~~~~g~~~~~v~~a~aGdIv~i~--g--l~~~~~GdtL~~~~ 374 (720)
T TIGR00490 336 VGVYMGPERVEVDEIPAGNIVAVI--G--LKDAVAGETICTTV 374 (720)
T ss_pred EEEeccCCccCccEECCCCEEEEE--C--ccccccCceeecCC
Confidence 7765 3589999999999885 3 34678999998654
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-24 Score=227.58 Aligned_cols=269 Identities=26% Similarity=0.379 Sum_probs=202.7
Q ss_pred ceeeeeeeeeccchhhhhhhccc------cccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKV------SSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA 725 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~------~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~ 725 (1021)
-|-++++|+++|||||...|+-. .+.+........+..|....|++||+++..+...|++.++.++|+|||||+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 46689999999999999998732 222223333344456888999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc--hhhHHHHHHHHHHHhhhcccc-
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ--DKELLDLVEMEIRELLTEYDF- 802 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~--~~~~~~~~~~~~~~~l~~~~~- 802 (1021)
+|...+.+.+..+|.|+.||||..|+.+||+..+..|+..++| |+-++||+|... +-+.++++++++.--+-.+.|
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~PitWP 171 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLELLDEIEEELGIQCAPITWP 171 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc-eEEEeeccccccCChHHHHHHHHHHhCcceeccccc
Confidence 9999999999999999999999999999999999999999999 999999999864 234455555444311111111
Q ss_pred ---------------------------------------------------------------------------CCCce
Q psy5021 803 ---------------------------------------------------------------------------DGENT 807 (1021)
Q Consensus 803 ---------------------------------------------------------------------------~~~~~ 807 (1021)
.++-.
T Consensus 172 IG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~~T 251 (528)
T COG4108 172 IGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGELT 251 (528)
T ss_pred ccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCCcc
Confidence 01113
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC---------CCC---CCeeEEEEEEEeeCCceeEEEEEEE
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR---------ITD---KPFLMPIEDVFSISGRGTVVTGKIE 875 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~---------~~~---~p~~~~I~~~~~v~g~G~Vv~G~V~ 875 (1021)
|++..||+.+ .|++.+|+.+.++.|+|.. +.+ ..|.|-|+-...-+..-+++.-+|.
T Consensus 252 PVFFGSAl~N-----------FGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~ 320 (528)
T COG4108 252 PVFFGSALGN-----------FGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVC 320 (528)
T ss_pred ceEehhhhhc-----------cCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEec
Confidence 4555555544 4889999999998887742 112 2456666666666677899999999
Q ss_pred EEEeeCCCEEEEeecCCeeEEEEEEEE----ecccccceeccCceEEEEecccCccCcccceEEeeC
Q psy5021 876 RGIVKNGEEIEIVGYKQTIKTTITGIE----MFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKI 938 (1021)
Q Consensus 876 ~G~l~~gd~v~i~p~~~~~~~~Vksi~----~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~ 938 (1021)
||....|+++...-.++. +++..-+ ..++.++.|.|||.+||.-.| -++.||+++.-
T Consensus 321 SGkferGMkv~h~rtGK~--~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG----~~~IGDT~t~G 381 (528)
T COG4108 321 SGKFERGMKVTHVRTGKD--VKLSDALTFMAQDRETVEEAYAGDIIGLHNHG----TIQIGDTFTEG 381 (528)
T ss_pred cccccCCceeeeeecCCc--eEecchHhhhhhhhhhhhhccCCCeEeccCCC----ceeecceeecC
Confidence 999999999988755543 2333322 235789999999999987543 47889999754
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-24 Score=225.05 Aligned_cols=131 Identities=28% Similarity=0.331 Sum_probs=117.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCc--cccccc-----------CCcccccChHHHhhhCceeeeeeeEEEeecccCc
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSH--KIGEVH-----------HGTTITDWMQQEQERGITITSASVSIFWEVNKFK 76 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~--~~g~~~-----------~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~ 76 (1021)
||+|+||+|||||||+++|++..+.+. .++.++ ++.+++|+.+.|++||+|++.....+.|. +
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----~ 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----K 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC----C
Confidence 699999999999999999999999887 334333 45788999999999999999999999998 8
Q ss_pred eeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 77 YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 77 ~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
..++|||||||.+|..++..+++.+|++|+|+|+++++..+++.++..+...++| +|+|+||+|+...
T Consensus 77 ~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 77 RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 8999999999999999999999999999999999999999999998888888866 5668999998643
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=221.68 Aligned_cols=134 Identities=34% Similarity=0.526 Sum_probs=119.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCC-cccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHG-TTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDTPG 86 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~-~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDtPG 86 (1021)
|||+|+||+|+|||||+++|++..+.+...|+...+ .+++|+.++|+++|+|+......+.|.. ++..+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 899999999999999999999998887654443333 5678999999999999999999998874 35568999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
|.+|...+..+++.+|++|+|+|+.++...+++.+++.+...++|+++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99999999999999999999999999998899888888888889999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=214.77 Aligned_cols=144 Identities=38% Similarity=0.546 Sum_probs=124.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
++|||+++|+.|+|||||+++|++..+.+...+.+ ..+.+|+.+.|..+|+|+......+.++ ++.+++|||||
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~--~~~~~~~~~~e~~~g~t~~~~~~~~~~~----~~~~~l~DtpG 74 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEV--EERVMDSNDLERERGITILAKNTAVTYK----DTKINIVDTPG 74 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcc--cccccccchhHHhcccccccceeEEEEC----CEEEEEEECCC
Confidence 48999999999999999999999877766543322 2467899999999999999988888888 89999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHH
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKK 156 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~ 156 (1021)
|.+|...+..+++.+|++++|+|++++...+++.+++.+...++|+++|+||+|+...+....++++.+.
T Consensus 75 ~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 144 (194)
T cd01891 75 HADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDL 144 (194)
T ss_pred cHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999998888888888888889999999999999766665555555443
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=199.61 Aligned_cols=119 Identities=46% Similarity=0.761 Sum_probs=112.4
Q ss_pred CeEEEEeeccccee-eeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcc
Q psy5021 467 PQVSYKESIKKIVT-QEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVV 545 (1021)
Q Consensus 467 p~V~yrEti~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl 545 (1021)
|+|+|||||+++++ ....|+++.|+.++|+.+.++++|.+ +.++.|.+++.++.+|++|+++|++||++++++|||
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~---~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl 77 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE---GGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPL 77 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS---TSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTT
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc---cCCceeeeccccccccHHHHHHHhhhhhheeccccc
Confidence 89999999999999 89999999999999999999999986 889999999999999999999999999999999999
Q ss_pred cccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5021 546 LGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588 (1021)
Q Consensus 546 ~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 588 (1021)
+||||+||+|+|.++.+|+++|++.+|+.|+++||++||++|+
T Consensus 78 ~g~pv~~v~v~l~~~~~~~~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 78 CGYPVTDVKVTLTDGEYHEVDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp TSSEB-SEEEEEEEEEC-TTTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred CCCceEEEEEEEEEeeecCCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999985
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E .... |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=249.88 Aligned_cols=244 Identities=27% Similarity=0.284 Sum_probs=183.1
Q ss_pred ccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC------------------eEEEEEecCC
Q psy5021 662 HGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN------------------KHYAHVDCPG 723 (1021)
Q Consensus 662 ~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~------------------~~i~liDtpG 723 (1021)
++||||+++|.+.. -..+...|+|++++...+..+. ..++||||||
T Consensus 472 ~~KTtLLD~iR~t~----------------v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPG 535 (1049)
T PRK14845 472 VHNTTLLDKIRKTR----------------VAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPG 535 (1049)
T ss_pred cccccHHHHHhCCC----------------cccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCC
Confidence 34999999999833 1334456899998887776542 1289999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hh----------------hHH
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DK----------------ELL 786 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~----------------~~~ 786 (1021)
|++|...+..++..+|++++|+|+++|...|+.+++..+...++| +|+|+||+|+.. +. ...
T Consensus 536 he~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~ 614 (1049)
T PRK14845 536 HEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLNFNEQDQHAL 614 (1049)
T ss_pred cHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhhhhhhHHHHH
Confidence 999998888888999999999999999999999999999999999 999999999863 21 011
Q ss_pred HHHHHHHHH---hhhccccCC----------CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC-----CCCCC
Q psy5021 787 DLVEMEIRE---LLTEYDFDG----------ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP-----TPNRI 848 (1021)
Q Consensus 787 ~~~~~~~~~---~l~~~~~~~----------~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~-----~~~~~ 848 (1021)
+++..++.+ .|...|+.. ..++++|+||++| +|+++|+++|....+ .....
T Consensus 615 ~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tG-----------eGId~Ll~~l~~l~~~~l~~~L~~~ 683 (1049)
T PRK14845 615 TELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTG-----------EGIPELLMMVAGLAQKYLEERLKLN 683 (1049)
T ss_pred HHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCC-----------CCHHHHHHHHHHhhHHhhhhhhccC
Confidence 222222112 234455432 3579999999998 488999988864222 12234
Q ss_pred CCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec------------ccccceeccCce
Q psy5021 849 TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF------------KKTLDEGLAGEN 916 (1021)
Q Consensus 849 ~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~------------~~~~~~a~~G~~ 916 (1021)
.+.|++++|.+++.++|.|+|++|.|.+|+|++||.+.++|....+.++|+++..+ ...+++|.|+.-
T Consensus 684 ~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~ 763 (1049)
T PRK14845 684 VEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAG 763 (1049)
T ss_pred CCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCc
Confidence 57899999999999999999999999999999999999998766667899999853 235667777766
Q ss_pred EEEEecccCccCcccceEE
Q psy5021 917 VGILLRSVKREEVERGQVL 935 (1021)
Q Consensus 917 v~l~l~~~~~~~i~~G~vl 935 (1021)
|.+...+++ .+..|+-+
T Consensus 764 vki~a~gl~--~~~aG~~~ 780 (1049)
T PRK14845 764 VKIAAPGLE--EVLAGSPI 780 (1049)
T ss_pred eEEecCCcc--ccCCCCeE
Confidence 666544432 23455544
|
|
| >cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=193.87 Aligned_cols=115 Identities=29% Similarity=0.414 Sum_probs=106.4
Q ss_pred EEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCccccc
Q psy5021 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGY 548 (1021)
Q Consensus 469 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~ 548 (1021)
|+|||||+++++. .+.++.++++|||+|.++++|++ +|.|+.|.+++.++.+|++|++||++|+++++++||| ||
T Consensus 1 VaYRETI~~~~~~--~~~~~~~~~~~~a~v~l~veP~~--~g~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~ 75 (115)
T cd01684 1 VIYKERPLGTGEG--VEHIEVPPNPFWATVGLRVEPLP--RGSGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GW 75 (115)
T ss_pred CceEEEeCCcEEE--EEEEccCCCcEEEEEEEEEEECC--CCCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CC
Confidence 6899999998763 44445568888999999999997 7889999999999999999999999999999999999 99
Q ss_pred ceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5021 549 PVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588 (1021)
Q Consensus 549 pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 588 (1021)
||+||+|+|.++.+|+++|++++|+.|+++|+++|+.+|+
T Consensus 76 pv~dv~V~l~~~~~h~~~ss~~af~~Aa~~a~~~a~~~a~ 115 (115)
T cd01684 76 EVTDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKKAG 115 (115)
T ss_pred CEeeEEEEEEEeeecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999874
|
RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=210.77 Aligned_cols=120 Identities=28% Similarity=0.336 Sum_probs=102.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc---------------
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN--------------- 73 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~--------------- 73 (1021)
+|||++||.|||||||+++|. ....|+.+.|.+||+|+..+..++.|...
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~---------------~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS---------------GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKE 65 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh---------------CCCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccc
Confidence 599999999999999999993 13368889999999999999888887510
Q ss_pred --------c------CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-CchhHHHHHHHHhhcCC-CEEEEEe
Q psy5021 74 --------K------FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-IQPQTETVWFQSQKYKV-PKMIFVN 137 (1021)
Q Consensus 74 --------~------~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-~~~~t~~~~~~~~~~~~-p~iiviN 137 (1021)
+ ..++++|||||||.+|...+.+++..+|++++|+|++++ ...++...|..+...++ |+++|+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvN 145 (203)
T cd01888 66 DSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQN 145 (203)
T ss_pred ccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEE
Confidence 0 127899999999999999999999999999999999984 67888888888776676 5888999
Q ss_pred CcCCCC
Q psy5021 138 KMDRIG 143 (1021)
Q Consensus 138 K~D~~~ 143 (1021)
|+|+..
T Consensus 146 K~Dl~~ 151 (203)
T cd01888 146 KIDLVK 151 (203)
T ss_pred chhccC
Confidence 999864
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=241.25 Aligned_cols=283 Identities=22% Similarity=0.362 Sum_probs=194.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC----------------CeE
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE----------------NKH 715 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~----------------~~~ 715 (1021)
.++|++||++||||||+++|+.....+........+++|..++|+++|+|++.....+.+. ++.
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYL 99 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceE
Confidence 4789999999999999999998766555433334456899999999999999887666653 577
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc------hh---hHH
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ------DK---ELL 786 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~------~~---~~~ 786 (1021)
++|+|||||.+|..++..+++.+|+||+||||.+|+..||+.+|..+...++| +|+++||||+.- .+ ..+
T Consensus 100 inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p-~i~~iNK~D~~~~~~~~~~~~~~~~~ 178 (843)
T PLN00116 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAYQTF 178 (843)
T ss_pred EEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCC-EEEEEECCcccchhhcCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999 788999999871 11 235
Q ss_pred HHHHHHHHHhhhccc--------cCCCceEEEEecccccc--------------------------------c--C----
Q psy5021 787 DLVEMEIRELLTEYD--------FDGENTKIVIGSALLAL--------------------------------E--G---- 820 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~--------~~~~~~~ii~iSa~~~~--------------------------------~--~---- 820 (1021)
+.+.++++..+..++ +++..-.++..|+..++ . +
T Consensus 179 ~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~~~~ 258 (843)
T PLN00116 179 SRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWT 258 (843)
T ss_pred HHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCceEE
Confidence 555566652222221 11111112222331110 0 0
Q ss_pred -CC--CC--------------------------------------ccC------------------c-chHHHHHHhhhc
Q psy5021 821 -KD--DN--------------------------------------QLG------------------T-TSIKKLLDVLDS 840 (1021)
Q Consensus 821 -~~--~~--------------------------------------~~~------------------~-~~i~~Ll~~l~~ 840 (1021)
.+ .. ... | .+...|++.+.+
T Consensus 259 ~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld~i~~ 338 (843)
T PLN00116 259 TKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEMIIF 338 (843)
T ss_pred ecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHHHHHH
Confidence 00 00 000 0 011456777777
Q ss_pred cCCCCCC-------------------------CCCCCeeEEEEEEEeeCCcee-EEEEEEEEEEeeCCCEEEEeecCC--
Q psy5021 841 SIPTPNR-------------------------ITDKPFLMPIEDVFSISGRGT-VVTGKIERGIVKNGEEIEIVGYKQ-- 892 (1021)
Q Consensus 841 ~l~~~~~-------------------------~~~~p~~~~I~~~~~v~g~G~-Vv~G~V~~G~l~~gd~v~i~p~~~-- 892 (1021)
++|.|.. ..+.|+...|..++..+..|. ++.+||.+|+|+.||.|++...+.
T Consensus 339 ~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n~~~ 418 (843)
T PLN00116 339 HLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPNYVP 418 (843)
T ss_pred hCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCCCCC
Confidence 7877731 113478888888887777776 899999999999999998643211
Q ss_pred eeE-----EEEEEEEec----ccccceeccCceEEEEecccCccC-cccceEEeeCC
Q psy5021 893 TIK-----TTITGIEMF----KKTLDEGLAGENVGILLRSVKREE-VERGQVLAKIG 939 (1021)
Q Consensus 893 ~~~-----~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~-i~~G~vl~~~~ 939 (1021)
..+ .+|..|... ..+++++.||+.+++.- ..+ +..|++|++..
T Consensus 419 ~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~g----l~~~~~~gdTL~~~~ 471 (843)
T PLN00116 419 GEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVG----LDQFITKNATLTNEK 471 (843)
T ss_pred CCccccceeEhheEEEecCCCceECcEECCCCEEEEEe----ecccccCCceecCCc
Confidence 001 244444433 25789999999998862 222 45588887543
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-22 Score=204.87 Aligned_cols=123 Identities=28% Similarity=0.424 Sum_probs=107.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec----------ccCceeE
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------NKFKYMI 79 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------~~~~~~i 79 (1021)
||+++||+|+|||||+++|+... +...+|...+|++||+|+.....++.|.. ++.++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~-----------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIA-----------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhcc-----------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceE
Confidence 89999999999999999997531 23567888999999999999988888762 2346899
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
++||||||.+|......+++.+|++++|+|+.++.+.++.+.+..+...++|+++++||+|+..
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9999999999999999999999999999999999988988888777777899999999999864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-22 Score=186.35 Aligned_cols=116 Identities=53% Similarity=0.883 Sum_probs=112.1
Q ss_pred EEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccce
Q psy5021 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPV 550 (1021)
Q Consensus 471 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv 550 (1021)
|||||+++++.++.+++++||++|||.+.++++|++ ++.++.|.+++.++.+|++|+++|++||++++++|||+||||
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~--~g~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv 78 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLP--RGSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPV 78 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECC--CCCCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCcc
Confidence 899999999878999999999999999999999998 788999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5021 551 IKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588 (1021)
Q Consensus 551 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 588 (1021)
+||+|+|.++.+|+.+|++++|+.|+++|+++||.+|+
T Consensus 79 ~~v~V~l~~~~~~~~~s~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01434 79 VDVKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred ccEEEEEEeceeecCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999874
|
Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-22 Score=206.04 Aligned_cols=189 Identities=28% Similarity=0.375 Sum_probs=143.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC----------CeEEEEEecC
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE----------NKHYAHVDCP 722 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~----------~~~i~liDtp 722 (1021)
+++++||++||||||+++|+.....+........+++|....|++||+|++.+...+.+. +..++|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 468899999999999999987654433222223457899999999999999886655544 6788999999
Q ss_pred ChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc------ch---hhHHHHHHHHH
Q psy5021 723 GHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV------QD---KELLDLVEMEI 793 (1021)
Q Consensus 723 G~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~------~~---~~~~~~~~~~~ 793 (1021)
||.+|...+..+++.+|++++|||+.+|...|+++++..+...++| +|+++||+|+. .. ..++..+.+++
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999989998 89999999975 21 23556666777
Q ss_pred HHhhhccc-------------cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 794 RELLTEYD-------------FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 794 ~~~l~~~~-------------~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
..+++.+. +.+.+-.++..||+.|+.-. .. ....+..+++.+.+++|.|
T Consensus 161 n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~-~~--~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFT-II--KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred hHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEec-cc--cccchHHHHHHHHhhCCCC
Confidence 77666552 11111126777888775221 11 1224567889888888754
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-21 Score=235.76 Aligned_cols=284 Identities=26% Similarity=0.411 Sum_probs=194.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC----------CeEEEEEec
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE----------NKHYAHVDC 721 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~----------~~~i~liDt 721 (1021)
.++|++||++||||||+++|+...+.+........+++|..++|++||+|++.+...+.+. ++.++|+||
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt 99 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS 99 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence 3889999999999999999997655443322222345899999999999999887666654 567999999
Q ss_pred CChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc----c--hh---hHHHHHHHH
Q psy5021 722 PGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV----Q--DK---ELLDLVEME 792 (1021)
Q Consensus 722 pG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~----~--~~---~~~~~~~~~ 792 (1021)
|||.+|...+..+++.+|+||+|||+.+|+..|++.+|..+...++| +|+++||||+. + .+ ..++.+.++
T Consensus 100 PG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p-~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~~ 178 (836)
T PTZ00416 100 PGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIR-PVLFINKVDRAILELQLDPEEIYQNFVKTIEN 178 (836)
T ss_pred CCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCC-EEEEEEChhhhhhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 88899999986 2 11 235556666
Q ss_pred HHHhhhcc--------ccCCCceEEEEeccccc---------------------------c-----c--CC---------
Q psy5021 793 IRELLTEY--------DFDGENTKIVIGSALLA---------------------------L-----E--GK--------- 821 (1021)
Q Consensus 793 ~~~~l~~~--------~~~~~~~~ii~iSa~~~---------------------------~-----~--~~--------- 821 (1021)
++..+..+ .+.+....+...|+..| + . +.
T Consensus 179 in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~~~~~ 258 (836)
T PTZ00416 179 VNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKDETNA 258 (836)
T ss_pred HHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEeccCCc
Confidence 66555421 11111111222232210 0 0 00
Q ss_pred ---------------------------CCC-----------ccC-----cch--------------HHHHHHhhhccCCC
Q psy5021 822 ---------------------------DDN-----------QLG-----TTS--------------IKKLLDVLDSSIPT 844 (1021)
Q Consensus 822 ---------------------------~~~-----------~~~-----~~~--------------i~~Ll~~l~~~l~~ 844 (1021)
++. ... ... ++.|++++.+++|.
T Consensus 259 ~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~~~lPs 338 (836)
T PTZ00416 259 QGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIVDHLPS 338 (836)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHHHhCCC
Confidence 000 000 000 14577778788887
Q ss_pred CCCC-------------------------CCCCeeEEEEEEEeeCCcee-EEEEEEEEEEeeCCCEEEEeecCCe--eE-
Q psy5021 845 PNRI-------------------------TDKPFLMPIEDVFSISGRGT-VVTGKIERGIVKNGEEIEIVGYKQT--IK- 895 (1021)
Q Consensus 845 ~~~~-------------------------~~~p~~~~I~~~~~v~g~G~-Vv~G~V~~G~l~~gd~v~i~p~~~~--~~- 895 (1021)
|... .+.|+...|..+...+..|. +..+||.||+|+.||.|++...+.. .+
T Consensus 339 P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~~~~e 418 (836)
T PTZ00416 339 PKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPGKKE 418 (836)
T ss_pred hhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCCCCcc
Confidence 7310 13477778888877788888 7999999999999999986432110 01
Q ss_pred ----EEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 896 ----TTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 896 ----~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
.+|..|... ..++++|.||+.|++. +++..-.+.| +|++..
T Consensus 419 ~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~--gl~~~~~~tg-TL~~~~ 467 (836)
T PTZ00416 419 DLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLV--GVDQYLVKSG-TITTSE 467 (836)
T ss_pred cchheecceeEEecCCCceECcEECCCCEEEEE--ecccceecce-eecCCC
Confidence 124444433 2489999999999886 2222225678 776543
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-22 Score=207.59 Aligned_cols=145 Identities=21% Similarity=0.287 Sum_probs=114.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----------------
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------------- 72 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------------- 72 (1021)
.|+++||.++|||||+++|.. +.... |. ......+|.+++|.++|+|+..+...+.+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~-~~-~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDN-GR-GKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDI 76 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCC-CC-CeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccc
Confidence 378999999999999999974 22211 10 1123567889999999999754432232221
Q ss_pred ---ccCceeEEEEcCCCCCCcHHHHHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-CH
Q psy5021 73 ---NKFKYMINIIDTPGHVDFTIEVERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA-NY 146 (1021)
Q Consensus 73 ---~~~~~~i~liDtPG~~~f~~~~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~-~~ 146 (1021)
...++.++|+|||||.+|...+.+++. .+|++++|+|+.+|...++++++.++...++|+++|+||+|+... .+
T Consensus 77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHH
Confidence 123678999999999999999999986 799999999999999999999999999999999999999998654 36
Q ss_pred HHHHHHHHHHhC
Q psy5021 147 NNCIIDIKKKFN 158 (1021)
Q Consensus 147 ~~~~~~i~~~l~ 158 (1021)
.+.++++.+.|.
T Consensus 157 ~~~~~~l~~~L~ 168 (224)
T cd04165 157 QETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHhc
Confidence 677777777764
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=229.25 Aligned_cols=275 Identities=21% Similarity=0.248 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccC--------------ceeEEEEcCCC
Q psy5021 21 KTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKF--------------KYMINIIDTPG 86 (1021)
Q Consensus 21 KTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~--------------~~~i~liDtPG 86 (1021)
||||+++|...+- +.+...|||.+-.+..+.+....+ ...++||||||
T Consensus 474 KTtLLD~iR~t~v------------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPG 535 (1049)
T PRK14845 474 NTTLLDKIRKTRV------------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPG 535 (1049)
T ss_pred cccHHHHHhCCCc------------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCC
Confidence 9999999953222 223566899888887777653110 12389999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC-CCCH---HHHHHHHHHHhCCcee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI-GANY---NNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~-~~~~---~~~~~~i~~~l~~~~~ 162 (1021)
|.+|.....++++.+|++++|+|+++|++.|+.+.+..+...++|+++++||+|+. ++.. ......++...
T Consensus 536 he~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~----- 610 (1049)
T PRK14845 536 HEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQD----- 610 (1049)
T ss_pred cHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhH-----
Confidence 99999999999999999999999999999999999999999999999999999985 3221 00001110000
Q ss_pred eeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHH---HHHHhcCCCHHHHHHHHcCCCCHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNEL---MLETLSNNDEFFLEKYINNNYSINDIK 239 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~e~~~~~d~~l~e~~l~~~~~~~~~~ 239 (1021)
.....+...+ +...+++. .+..+..
T Consensus 611 ----------------------------------------~~~~~el~~~l~~v~~~L~~~-----------G~~~e~~- 638 (1049)
T PRK14845 611 ----------------------------------------QHALTELEIKLYELIGKLYEL-----------GFDADRF- 638 (1049)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhhHHHhc-----------Ccchhhh-
Confidence 0000011111 11111111 1111111
Q ss_pred HHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccccc-CCCceEEEEEEEeecCCCceEEEEE
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL-NSNKFVSLVFKIFHDPFLGSLSFIR 318 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~-~~~p~~~~V~k~~~~~~~g~~~~~R 318 (1021)
..... .+..+|++++||++|.|++.|+++|....+.-.+.. ... +++|+.++|..++.+++.|.++.+.
T Consensus 639 ~~~~d---~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~-------L~~~~~~~~~g~VlEv~~~kG~G~vvt~i 708 (1049)
T PRK14845 639 DRVQD---FTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEER-------LKLNVEGYAKGTILEVKEEKGLGTTIDAI 708 (1049)
T ss_pred hhhhh---cCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhh-------hccCCCCceEEEEEEEEEecCceeEEEEE
Confidence 11111 145688999999999999999998875433211100 011 5689999999999999999999999
Q ss_pred EEeeEEecCCEEEeCCCce--eeEeceEEEe--------ecCCeeccccccCCCEEEE--ecCCccccCCeecc
Q psy5021 319 IYSGFIKVGDLVYNSTKKV--KEKIFRILRM--------FANSKKDINDAHFGDIVVI--VGLKESSTGDTLCS 380 (1021)
Q Consensus 319 V~sG~l~~gd~v~~~~~~~--~~~i~~i~~~--------~g~~~~~v~~a~aGdIv~i--~gl~~~~~gdtl~~ 380 (1021)
|++|+|+.||.|...+.+. ..+|..++.. .+....+++++.|..-+-| .|++.+..|+.+.-
T Consensus 709 v~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v 782 (1049)
T PRK14845 709 IYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRI 782 (1049)
T ss_pred EEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEEE
Confidence 9999999999999877654 4567766532 1224567888888777766 48888888877643
|
|
| >cd01680 EFG_like_IV Elongation Factor G-like domain IV | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=183.64 Aligned_cols=116 Identities=31% Similarity=0.564 Sum_probs=111.7
Q ss_pred EEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccce
Q psy5021 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPV 550 (1021)
Q Consensus 471 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv 550 (1021)
|||||.++++..+.+++++||+++|+++.++++|++ +++++.|.+++.++.+|++|+++|++||++++++|||||+||
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~--~~~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv 78 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLE--RGSGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPL 78 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECC--CCCCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCce
Confidence 999999999888999999999999999999999998 778999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5021 551 IKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588 (1021)
Q Consensus 551 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 588 (1021)
+|++|+|.++.+|+.++++++|+.|+++||++||.+|+
T Consensus 79 ~~v~v~l~~~~~~~~~~~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01680 79 TDVRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred eeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999874
|
This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=204.48 Aligned_cols=175 Identities=27% Similarity=0.340 Sum_probs=140.2
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEE------------------------EE
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV------------------------EY 709 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~------------------------~~ 709 (1021)
.+++|+.++|||||+++|+...... +...+..+++++++|.++|+|+..... .+
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~--~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDN--GRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCC--CCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 4678999999999999999744333 334444568999999999999865542 23
Q ss_pred eeCCeEEEEEecCChhhhHHHHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHH
Q psy5021 710 ESENKHYAHVDCPGHADYIKNMITGAA--QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLD 787 (1021)
Q Consensus 710 ~~~~~~i~liDtpG~~~~~~~~~~~~~--~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~ 787 (1021)
+..++.++|+|||||++|.+++..++. .+|++++|+|+.+|...++++++.++...++| +++|+||+|+.+ ++.++
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~-~~~~~ 157 (224)
T cd04165 80 EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLAP-ANILQ 157 (224)
T ss_pred eeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccccC-HHHHH
Confidence 345678999999999999999999986 79999999999999999999999999999999 889999999876 44566
Q ss_pred HHHHHHHHhhhccccC---------------------CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 788 LVEMEIRELLTEYDFD---------------------GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 788 ~~~~~~~~~l~~~~~~---------------------~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
...+++.++++..+.. ...+|++++||.+| +|++.|++.|.. +|.
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg-----------~Gi~~L~~~L~~-lp~ 223 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG-----------EGLDLLHAFLNL-LPL 223 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc-----------cCHHHHHHHHHh-cCC
Confidence 6677777777643322 12358999999988 488999988865 653
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-21 Score=201.78 Aligned_cols=169 Identities=38% Similarity=0.518 Sum_probs=135.5
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-------------------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE------------------- 712 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~------------------- 712 (1021)
.+.|++||.+||||||+.+|++. ..|..+.|.++|.|+......+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 36799999999999999999752 2477888999999998886665442
Q ss_pred --------C------eEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCeEEEEEeec
Q psy5021 713 --------N------KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLARQVGVPNIVVFLNKA 777 (1021)
Q Consensus 713 --------~------~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-~~~qt~e~l~~~~~~~ip~iIvviNK~ 777 (1021)
+ +.++|||||||++|.+.+..++..+|++++|+|++++ ...++.+++..+...+++++|+++||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 2 6899999999999999999999999999999999984 567889999888888887799999999
Q ss_pred cccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC
Q psy5021 778 DCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR 847 (1021)
Q Consensus 778 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~ 847 (1021)
|+.+.. ......+++.++++.+.. ..++++++||++| +|+++|+++|.+.+|.|+|
T Consensus 148 Dl~~~~-~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g-----------~gi~~L~~~l~~~l~~~~~ 203 (203)
T cd01888 148 DLVKEE-QALENYEQIKKFVKGTIA--ENAPIIPISAQLK-----------YNIDVLLEYIVKKIPTPPR 203 (203)
T ss_pred hccCHH-HHHHHHHHHHHHHhcccc--CCCcEEEEeCCCC-----------CCHHHHHHHHHHhCCCCCC
Confidence 998632 233334555555554321 2467999999987 3899999999988877653
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-21 Score=204.31 Aligned_cols=289 Identities=23% Similarity=0.291 Sum_probs=209.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc------------cccc-CCcccccChHHHhhhCceeeeeeeEEEee
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI------------GEVH-HGTTITDWMQQEQERGITITSASVSIFWE 71 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~------------g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~ 71 (1021)
...--|+.++||+++||||+-..+++..|.+... ++-. .-++++|+.++|+++|-|+....++|...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3556799999999999999999999888765431 1100 12678999999999999999999999988
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCCEEE-EEeCcCCCC
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVPKMI-FVNKMDRIG 143 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~ 143 (1021)
..++++.|+|||..|..+++.++.+||.+++|++|..| -..||+++...++..++..++ ++||||-+.
T Consensus 156 ----~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 156 ----NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred ----ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence 89999999999999999999999999999999999755 245999999999998887655 599999886
Q ss_pred CCH-HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCH
Q psy5021 144 ANY-NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDE 222 (1021)
Q Consensus 144 ~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~ 222 (1021)
.++ .+-.+++.+++.... +.+-|++
T Consensus 232 vnWs~eRy~E~~~k~~~fL----------------------r~~g~n~-------------------------------- 257 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFL----------------------RKLGFNP-------------------------------- 257 (501)
T ss_pred cCcchhhHHHHHHHHHHHH----------------------HHhcccC--------------------------------
Confidence 653 112222222221000 0000000
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHh--CCCCccccccCCcccccc-CCCceE
Q psy5021 223 FFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEY--LPSPYDVDFKNNDYNINL-NSNKFV 299 (1021)
Q Consensus 223 ~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~--lP~p~~~~~~~~~~~~~~-~~~p~~ 299 (1021)
...-.++| +|..+|.++.+..+.++-+ .|++.+. +..-...++ .++|++
T Consensus 258 -----------------------~~d~~f~p---~sg~tG~~~k~~~~s~cpwy~gp~fl~~--ld~l~~~~R~~~GP~~ 309 (501)
T KOG0459|consen 258 -----------------------KPDKHFVP---VSGLTGANVKDRTDSVCPWYKGPIFLEY--LDELPHLERILNGPIR 309 (501)
T ss_pred -----------------------CCCceeee---cccccccchhhcccccCCcccCCcccee--hhccCcccccCCCCEE
Confidence 00012344 4888888887766633322 2222221 100011223 789999
Q ss_pred EEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccC
Q psy5021 300 SLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTG 375 (1021)
Q Consensus 300 ~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~g 375 (1021)
+.|..-+.| .|++.+++|-||+++.||.+...+......|..||. +-.+++++.+|+.+-+ .|++ ++..|
T Consensus 310 ~pI~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~----ddvE~~~~~pGenvk~rlkgieeedi~~G 383 (501)
T KOG0459|consen 310 CPVANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYS----DDVETDRVAPGENVKLRLKGIEEEDISPG 383 (501)
T ss_pred eehhhhccc--cceEEEEEecccceecCCeEEEccCCcceEEEEEec----ccceeeeccCCcceEEEecccchhhccCc
Confidence 998766654 689999999999999999999999888888888863 2578999999999987 5665 48999
Q ss_pred CeeccCCccc
Q psy5021 376 DTLCSLSENI 385 (1021)
Q Consensus 376 dtl~~~~~~~ 385 (1021)
-+||++.++.
T Consensus 384 fiL~~~~n~~ 393 (501)
T KOG0459|consen 384 FILCSPNNPC 393 (501)
T ss_pred eEEecCCCcc
Confidence 9999987553
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=194.85 Aligned_cols=189 Identities=31% Similarity=0.404 Sum_probs=145.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
+++++|++++|||||+++|+..............+.++..+.|+++|+|+......+...+..+.|||||||++|...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 67899999999999999999643222211111123467778899999999999888988899999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC--ceEEE
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE--NTKIV 810 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ii 810 (1021)
.+++.+|++++|+|++++...++..++..+...++| +++|+||+|+.+. +.+...+++.++++.++...+ +++++
T Consensus 84 ~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iv 160 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPDA--RPEEVVDEVFDLFIELGATEEQLDFPVL 160 (194)
T ss_pred HHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCCCC--CHHHHHHHHHHHHHHhCCccccCccCEE
Confidence 999999999999999998888888888877788999 8889999999752 233444555666544443222 46899
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
++||++|.+.... .....++.+|++.|.+++|.|
T Consensus 161 ~~Sa~~g~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 161 YASAKNGWASLNL-EDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred Eeehhcccccccc-ccchhhHHHHHHHHHhcCCCC
Confidence 9999998654322 222457889999999988765
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01693 mtEFG2_like_IV mtEF-G2 domain IV | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-21 Score=180.98 Aligned_cols=116 Identities=21% Similarity=0.280 Sum_probs=104.5
Q ss_pred EEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCC----CceEEeccccCCCchhhHHHHHHHHHHHHhcCc
Q psy5021 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKE----NFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGV 544 (1021)
Q Consensus 469 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~----~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gp 544 (1021)
|+|||||+++++.+++|++++||++||++|.++++|++ ++. ++.|.+.. ++.+|++|++||++|+++++++||
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~--~~~~~~~~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gp 77 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQ--ASSSPVELIELANSA-IEVLLKRIQEAVENGVHSALLQGP 77 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECC--CCCCCCceeEecCcc-CCcChHHHHHHHHHHHHHHHHcCC
Confidence 68999999998877899999999999999999999997 444 56776555 788999999999999999999999
Q ss_pred ccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5021 545 VLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588 (1021)
Q Consensus 545 l~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 588 (1021)
|+||||+||+|+|.++.+|+++|++..+ .|++.|+++||.+|+
T Consensus 78 l~G~pv~~v~V~l~~~~~~~~~s~~~~~-~Aa~~a~~~al~~a~ 120 (120)
T cd01693 78 LLGFPVQDVAITLHSLTIGPGTSPTMIS-ACASQCVQKALKSAG 120 (120)
T ss_pred ccCCceeeEEEEEEeCCcCCCCCHHHHH-HHHHHHHHHHHHhcc
Confidence 9999999999999999999887776665 889999999998874
|
This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-20 Score=189.86 Aligned_cols=188 Identities=39% Similarity=0.642 Sum_probs=148.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+++|.+|+|||||+++|+...........+ ....+++...|..+|+|+......+.+. +..++||||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~liDtpG~~~ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTV--EETFLDVLKEERERGITIKSGVATFEWP----DRRVNFIDTPGHED 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCce--ecccccCCHHHHHcCCCeecceEEEeeC----CEEEEEEeCCCcHH
Confidence 68999999999999999998776554332211 1256788889999999999888888887 88999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC-CCHHHHHHHHHHHhCCceeeeeeec
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG-ANYNNCIIDIKKKFNCIVLPINFNI 168 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~-~~~~~~~~~i~~~l~~~~~~~~~p~ 168 (1021)
|...+..+++.+|++++|+|+.++...+..+.+..+...++|+++++||+|+.. .+.....+++.+.++....
T Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~------ 148 (189)
T cd00881 75 FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGF------ 148 (189)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccc------
Confidence 999999999999999999999999988889998888888999999999999975 4455555555555432100
Q ss_pred ccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q psy5021 169 GIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLK 248 (1021)
Q Consensus 169 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~ 248 (1021)
...+ .+....
T Consensus 149 -----------------------------------------------------------------~~~~-----~~~~~~ 158 (189)
T cd00881 149 -----------------------------------------------------------------ISTK-----EEGTRN 158 (189)
T ss_pred -----------------------------------------------------------------cchh-----hhhccc
Confidence 0000 011112
Q ss_pred CceeEEEeccccCcccHHHHHHHHHHhCCCC
Q psy5021 249 NKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279 (1021)
Q Consensus 249 ~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 279 (1021)
....|++.+||++|.|++++++.+.+.+|.|
T Consensus 159 ~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 159 GLLVPIVPGSALTGIGVEELLEAIVEHLPPP 189 (189)
T ss_pred CCcceEEEEecccCcCHHHHHHHHHhhCCCC
Confidence 3457899999999999999999999999865
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-21 Score=210.63 Aligned_cols=266 Identities=24% Similarity=0.368 Sum_probs=199.2
Q ss_pred ceeeeeeeeeccchhhhhhhcccccccc---ccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIY---GGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
-.+|+..|.++||||+..+++...+.+. ..... .+.||....|+++|+|+.....++.|.+.++++||||||-+|.
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~-~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG-GATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccC-ceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 4679999999999999999875443322 11111 3468999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchh--hHHHHHHHH--------------
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDK--ELLDLVEME-------------- 792 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~--~~~~~~~~~-------------- 792 (1021)
-...++++.-|+|++|+|+..|+..||...|..+++.++| -|..+||||..... ..++.+...
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig~ 197 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVP-RICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIGS 197 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChHHHHHHHHhhcCCchheeEccccc
Confidence 9999999999999999999999999999999999999999 56688999976411 011111000
Q ss_pred -----------------------------------------------------------------------HHHhhhccc
Q psy5021 793 -----------------------------------------------------------------------IRELLTEYD 801 (1021)
Q Consensus 793 -----------------------------------------------------------------------~~~~l~~~~ 801 (1021)
+....++.-
T Consensus 198 e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~T 277 (721)
T KOG0465|consen 198 ESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRAT 277 (721)
T ss_pred cccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 001111111
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC--------------------CCC-CeeEEEEEE
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI--------------------TDK-PFLMPIEDV 860 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~--------------------~~~-p~~~~I~~~ 860 (1021)
.....+|++..||+.+. ++..||+++.+++|.|... .++ ||......+
T Consensus 278 i~r~fvPVl~GSAlKNk-----------GVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKl 346 (721)
T KOG0465|consen 278 IKRSFVPVLCGSALKNK-----------GVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKL 346 (721)
T ss_pred hhcceeeEEechhhccc-----------CcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEe
Confidence 11223678888988763 7888999999999877421 122 666666666
Q ss_pred EeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc----cccceeccCceEEEEecccCccCcccceEEe
Q psy5021 861 FSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK----KTLDEGLAGENVGILLRSVKREEVERGQVLA 936 (1021)
Q Consensus 861 ~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~----~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 936 (1021)
..-+. |...+-+|++|+|++||.++-.- ...++++-.+...| ++++++.|||++.+. |+ +...||++.
T Consensus 347 e~g~f-GqLTyvRvYqG~L~kG~~iyN~r--tgKKvrv~RL~rmHa~~medV~~v~AG~I~alf--Gi---dcasGDTft 418 (721)
T KOG0465|consen 347 EEGRF-GQLTYVRVYQGTLSKGDTIYNVR--TGKKVRVGRLVRMHANDMEDVNEVLAGDICALF--GI---DCASGDTFT 418 (721)
T ss_pred eecCc-cceEEEEEeeeeecCCcEEEecC--CCceeEhHHHhHhcccccchhhhhhccceeeee--cc---ccccCceec
Confidence 55444 88899999999999999998763 34456666555443 589999999998765 43 677899888
Q ss_pred eC
Q psy5021 937 KI 938 (1021)
Q Consensus 937 ~~ 938 (1021)
+.
T Consensus 419 d~ 420 (721)
T KOG0465|consen 419 DK 420 (721)
T ss_pred cC
Confidence 65
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-20 Score=191.34 Aligned_cols=170 Identities=32% Similarity=0.517 Sum_probs=134.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--------------CeEEEE
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--------------NKHYAH 718 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--------------~~~i~l 718 (1021)
.+++.|++++|||||+++|+... ..+.+++..+|.++|+|++.....+.+. +..++|
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~---------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIA---------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITL 72 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhcc---------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEE
Confidence 57899999999999999999742 1124588889999999999887776654 678999
Q ss_pred EecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhh---HHHHHHHHHHH
Q psy5021 719 VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKE---LLDLVEMEIRE 795 (1021)
Q Consensus 719 iDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~---~~~~~~~~~~~ 795 (1021)
||||||.+|.+.+..++..+|++++|+|+.++...++.+++..+...++| +++++||+|+..... ..+.+.+++..
T Consensus 73 ~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~ 151 (192)
T cd01889 73 VDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLIPEEERERKIEKMKKKLQK 151 (192)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999888888888877778887 889999999975222 12333333333
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
.+..+++ ..++++++||++| .|+++|+++|.+.++.|
T Consensus 152 ~~~~~~~--~~~~vi~iSa~~g-----------~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 152 TLEKTRF--KNSPIIPVSAKPG-----------GGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHhcCc--CCCCEEEEeccCC-----------CCHHHHHHHHHhccccc
Confidence 3333333 2468999999988 48999999999888755
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-20 Score=186.42 Aligned_cols=129 Identities=17% Similarity=0.275 Sum_probs=104.6
Q ss_pred CCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCC-------------------------------------
Q psy5021 466 KPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLE------------------------------------- 508 (1021)
Q Consensus 466 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~------------------------------------- 508 (1021)
+|.|+|||||.+.+.... ..+... ...++.+.++|++++
T Consensus 1 ~P~V~f~ETv~~~s~~~~-~~ks~n---k~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~i 76 (178)
T cd01683 1 DPVVTFCETVVETSSAKC-FAETPN---KKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSI 76 (178)
T ss_pred CCcceEEeeccccCCCce-eeECCC---cccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCe
Confidence 699999999988764211 112211 135889999999741
Q ss_pred ------CCCCceEEeccccCC----CchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeecc--CCCCHHHHHHHH
Q psy5021 509 ------NKENFIFKSEIIGGS----IPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHS--VDSSEYAFKNAA 576 (1021)
Q Consensus 509 ------~~~~~~f~~~~~~~~----~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~ 576 (1021)
+..+|.|.|.+.+.. +..+++++|++||++|+++||||||||+||+|+|.|+.+|+ .++++++|+.|+
T Consensus 77 w~fgP~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aa 156 (178)
T cd01683 77 WAFGPDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTA 156 (178)
T ss_pred EEEcCCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHH
Confidence 012477888766443 34678999999999999999999999999999999999998 788999999999
Q ss_pred HHHHHHHHHhcCcceeeeeEEE
Q psy5021 577 AIALKDALKKANSYILEPIMKV 598 (1021)
Q Consensus 577 ~~a~~~a~~~a~~~llEP~~~~ 598 (1021)
++||++|+++|+|+||||||.|
T Consensus 157 r~a~~~a~l~a~prLLEPim~v 178 (178)
T cd01683 157 RRACYSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHHHHHCCCEEEcceEeC
Confidence 9999999999999999999975
|
The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=192.60 Aligned_cols=128 Identities=38% Similarity=0.550 Sum_probs=112.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccc-c-ccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYG-G-EVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~-~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
+++++||+++|||||+++|+.....+.. + .....+++|..+.|+++|+|+......+++++.+++|||||||.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4688999999999999999876544332 1 1123356789999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
+..+++.+|++++|+|+.+|...++++++..+...++| +++++||+|+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP-TIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccccC
Confidence 99999999999999999999999999999999999999 778999999874
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-20 Score=198.16 Aligned_cols=158 Identities=29% Similarity=0.323 Sum_probs=129.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccc--cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYG--GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
+++++||+|+|||||+++|+...+.+.. ......+.+|..++|+++|+|++.....+++++.+++|||||||.+|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 4689999999999999999864433221 11123457899999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
+..+++.+|++|+|||+.+|...++.+++..+...++| +++++||+|+.+.. ++...+++++.+....+ ..++
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~--~~~~~~~l~~~l~~~~~----~~~~ 153 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVP-RIAFVNKMDRTGAD--FFRVVEQIREKLGANPV----PLQL 153 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHhCCCce----EEEe
Confidence 99999999999999999999999999999999999999 77899999987522 34455566666543322 3478
Q ss_pred Eeccccc
Q psy5021 811 IGSALLA 817 (1021)
Q Consensus 811 ~iSa~~~ 817 (1021)
|+|+..+
T Consensus 154 Pisa~~~ 160 (270)
T cd01886 154 PIGEEDD 160 (270)
T ss_pred ccccCCC
Confidence 9998754
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-20 Score=160.06 Aligned_cols=75 Identities=47% Similarity=0.762 Sum_probs=70.7
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeC
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISK 466 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~ 466 (1021)
||+|+++++|+|.++.|.++|.+||++|++|||+|++.+|++|||++|+||||+||||+++||+++||+++++++
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999874
|
... |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-19 Score=180.16 Aligned_cols=162 Identities=44% Similarity=0.638 Sum_probs=126.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-CeEEEEEecCChhhhHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-NKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~~~~~~ 730 (1021)
++++++|.+++|||||+++|++.. .+....+..+++|++.....+... +..+.+|||||+++|...
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~-------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 67 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIE-------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKN 67 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcc-------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHH
Confidence 357899999999999999998632 133445666788888887777766 778999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
+..+++.+|++++|+|++++...++.+++..+...+.+++++++||+|+.+.. ......+++.+.++..+. ...+++
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~ 144 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDED-WLELVEEEIRELLAGTFL--ADAPIF 144 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHH-HHHHHHHHHHHHHHhcCc--CCCcEE
Confidence 99999999999999999988888888888877777874499999999997632 233334455555554322 236899
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++||+++ +|++++++.+..
T Consensus 145 ~~Sa~~~-----------~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTG-----------EGIEELKEYLDE 163 (164)
T ss_pred EEeCCCC-----------cCHHHHHHHHhh
Confidence 9999987 488888888753
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=184.03 Aligned_cols=173 Identities=28% Similarity=0.437 Sum_probs=132.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-----CCeEEEEEecCChhhh
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-----ENKHYAHVDCPGHADY 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-----~~~~i~liDtpG~~~~ 727 (1021)
+++.+|++++|||||+++|++....+.... ...++++....|+++|+|.......+.+ .+..+.|||||||.+|
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKRE-MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCC-CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 468899999999999999998654333221 1234578888999999999877665533 4567889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...+..+++.+|++|+|+|++++...++.+++..+...++| +++|+||+|+.+.. .....+++.+. +++. ..
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~--~~~~~~~~~~~---~~~~--~~ 152 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSAD--PERVKQQIEDV---LGLD--PS 152 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCC--HHHHHHHHHHH---hCCC--cc
Confidence 99999999999999999999998888888888777778888 89999999986421 22222333333 3331 13
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
.++++||++| +|+++|+++|.+.+|.|
T Consensus 153 ~~~~~Sa~~g-----------~gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 153 EAILVSAKTG-----------LGVEDLLEAIVERIPPP 179 (179)
T ss_pred cEEEeeccCC-----------CCHHHHHHHHHhhCCCC
Confidence 5899999987 48999999998877654
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=179.52 Aligned_cols=179 Identities=42% Similarity=0.616 Sum_probs=144.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
+++++|.+++|||||+|+|++.............+.++....+..+|+|++.....++..+..+.||||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 46789999999999999999865444333333224567778889999999988888888889999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc---------C
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF---------D 803 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~---------~ 803 (1021)
.++..+|++++|+|+.++...+..+++..+...+.| +++++||+|+.. +.......+++.+.++..+. .
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRVG-EEDLEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCCcc-hhcHHHHHHHHHHHHccccccchhhhhccc
Confidence 999999999999999998888888888888887888 999999999986 22344455666666665543 2
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
....+++++||++|. |+++++++|.+.+|.
T Consensus 159 ~~~~~v~~~Sa~~g~-----------gi~~l~~~l~~~l~~ 188 (189)
T cd00881 159 GLLVPIVPGSALTGI-----------GVEELLEAIVEHLPP 188 (189)
T ss_pred CCcceEEEEecccCc-----------CHHHHHHHHHhhCCC
Confidence 345789999999873 899999999887764
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-19 Score=185.14 Aligned_cols=189 Identities=25% Similarity=0.384 Sum_probs=139.7
Q ss_pred eeeeeeeeeccchhhhhhhcccccccc---ccccccccccCCchhhhhcCceEeeeEEEEeeC-----CeEEEEEecCCh
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIY---GGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----NKHYAHVDCPGH 724 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----~~~i~liDtpG~ 724 (1021)
+.+++|++++|||||+++|+....... .......++++....|+++|+|+......+.+. ...+++||||||
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 467899999999999999997654443 222333456799999999999998887776543 367899999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc-------c--hhhHHHHHHHHHHH
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV-------Q--DKELLDLVEMEIRE 795 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~-------~--~~~~~~~~~~~~~~ 795 (1021)
.+|...+..++..+|++++|+|+.++...++.+++..+...++| +++++||+|++ . ..+++.++.+++..
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888888778888 88999999986 1 12456667777888
Q ss_pred hhhccccCC------CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 796 LLTEYDFDG------ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 796 ~l~~~~~~~------~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
+++.+++.. .+..++..|++.++.-+- . .-.....|++.|.+.+|.|
T Consensus 161 ~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~-~--~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTL-E--SFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHhcCCCceEeccCCCeEEEEecCCCeEEec-H--HHHhhhhHHHHHHhhCCCC
Confidence 887776633 122355567765532110 0 0123446888887766654
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-19 Score=202.75 Aligned_cols=248 Identities=27% Similarity=0.374 Sum_probs=179.3
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe--------------
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE-------------- 710 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~-------------- 710 (1021)
-..+|||..+.+.||++.|||-|+..|.+.+. .+....|+|..+...+|.
T Consensus 469 ~~~~lRSPIcCilGHVDTGKTKlld~ir~tNV----------------qegeaggitqqIgAt~fp~~ni~e~tk~~~~~ 532 (1064)
T KOG1144|consen 469 STENLRSPICCILGHVDTGKTKLLDKIRGTNV----------------QEGEAGGITQQIGATYFPAENIREKTKELKKD 532 (1064)
T ss_pred cchhcCCceEEEeecccccchHHHHHhhcccc----------------ccccccceeeeccccccchHHHHHHHHHHHhh
Confidence 45689999999999999999999999987321 222334666655554442
Q ss_pred ----eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-h---
Q psy5021 711 ----SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-D--- 782 (1021)
Q Consensus 711 ----~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~--- 782 (1021)
..--.+.+||||||+.|.....+|.+.||+||||||..+|+.+||.|.+.+++..+.| +||++||+|... |
T Consensus 533 ~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp-FivALNKiDRLYgwk~~ 611 (1064)
T KOG1144|consen 533 AKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP-FIVALNKIDRLYGWKSC 611 (1064)
T ss_pred hhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCC-eEEeehhhhhhcccccC
Confidence 1223578999999999999999999999999999999999999999999999999999 999999999652 2
Q ss_pred --hhHHHH-------HHHHHHHhhh-------ccccC----------CCceEEEEecccccccCCCCCccCcchHHHHHH
Q psy5021 783 --KELLDL-------VEMEIRELLT-------EYDFD----------GENTKIVIGSALLALEGKDDNQLGTTSIKKLLD 836 (1021)
Q Consensus 783 --~~~~~~-------~~~~~~~~l~-------~~~~~----------~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~ 836 (1021)
...++. +.+++...+. .-|++ ...+.++|+||.+| +|+++|+-
T Consensus 612 p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG-----------eGipdLl~ 680 (1064)
T KOG1144|consen 612 PNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG-----------EGIPDLLL 680 (1064)
T ss_pred CCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC-----------CCcHHHHH
Confidence 111111 1111111111 11211 13478999999988 48899888
Q ss_pred hhhccCCCC---CCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCe-------------e-EEEEE
Q psy5021 837 VLDSSIPTP---NRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQT-------------I-KTTIT 899 (1021)
Q Consensus 837 ~l~~~l~~~---~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~-------------~-~~~Vk 899 (1021)
+|.+..... +-..-..++..|.++-.+.|.|+.+-..+..|.|+.||.+.++..+.. + .-+|+
T Consensus 681 llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk 760 (1064)
T KOG1144|consen 681 LLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVK 760 (1064)
T ss_pred HHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccc
Confidence 887633211 111234678999999999999999999999999999999998754321 1 24677
Q ss_pred EEEeccc-------------ccceeccCceEEEE
Q psy5021 900 GIEMFKK-------------TLDEGLAGENVGIL 920 (1021)
Q Consensus 900 si~~~~~-------------~~~~a~~G~~v~l~ 920 (1021)
+-++|+. .++.|.+|-.+-+.
T Consensus 761 ~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~Vv 794 (1064)
T KOG1144|consen 761 GTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVV 794 (1064)
T ss_pred cceeehhHhhhhccchhhhcchHHHhcCCeeEEe
Confidence 7777764 44567777766554
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=186.86 Aligned_cols=129 Identities=36% Similarity=0.517 Sum_probs=112.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccc-ccc-----ccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-----RAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA 725 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-----~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~ 725 (1021)
-+++++||+|+|||||+++|+.....+.. +.. ...+++|..+.|+++|+|+......+++.+..++|||||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 35789999999999999999865444332 111 244567999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
+|...+..+++.+|++|+|+|++.+...++..++..+...++| +++++||+|+.+
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCC
Confidence 9999999999999999999999999989999999988888999 888999999865
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-19 Score=178.22 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=103.9
Q ss_pred CCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCC-------------------------------------
Q psy5021 466 KPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLE------------------------------------- 508 (1021)
Q Consensus 466 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~------------------------------------- 508 (1021)
+|.|+||||+.+.+.. .....+. ++ ..++.++++|++.+
T Consensus 1 ~PiV~frETi~~~~~~--~~~~~s~-n~-~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~I 76 (177)
T cd01681 1 DPVVSFRETVVETSSG--TCLAKSP-NK-HNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKI 76 (177)
T ss_pred CCCCCEeeecccCCCc--cEEEEcC-Cc-ceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcE
Confidence 5999999999887642 1111111 11 35788999998641
Q ss_pred ------CCCCceEEeccccCCC----chhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccC--CCCHHHHHHHH
Q psy5021 509 ------NKENFIFKSEIIGGSI----PKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSV--DSSEYAFKNAA 576 (1021)
Q Consensus 509 ------~~~~~~f~~~~~~~~~----~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~--~s~~~~~~~a~ 576 (1021)
+..+|.|.|.+.+... +++|+++|++||++|+++||||||||+||+|+|.++.+|+. ++++++|..|+
T Consensus 77 w~fGP~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~ 156 (177)
T cd01681 77 WAFGPDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAA 156 (177)
T ss_pred EEECCCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHH
Confidence 1134777776655444 78999999999999999999999999999999999999986 78889999999
Q ss_pred HHHHHHHHHhcCcceeeeeEE
Q psy5021 577 AIALKDALKKANSYILEPIMK 597 (1021)
Q Consensus 577 ~~a~~~a~~~a~~~llEP~~~ 597 (1021)
++||++|+++|+|+||||||.
T Consensus 157 r~a~~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 157 RRACYAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHHHHHhhCCCEEEccccC
Confidence 999999999999999999984
|
U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=173.13 Aligned_cols=116 Identities=27% Similarity=0.369 Sum_probs=95.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+++|++|+|||||+++|.... .+..+.|..+++|+......+.+.. ++.+++|||||+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~---------------~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~DtpG~~~ 63 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE---------------TDRLPEEKKRGITIDLGFAYLDLPS---GKRLGFIDVPGHEK 63 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc---------------cccchhhhccCceEEeeeEEEEecC---CcEEEEEECCChHH
Confidence 79999999999999999995211 1233456677888887766665542 56899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCC-CEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV-PKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~-p~iiviNK~D~~~ 143 (1021)
|...+..+++.+|++++|+|++++...++...+..+...+. |+++++||+|+..
T Consensus 64 ~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 64 FIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 99889999999999999999999888888887777666666 9999999999864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-18 Score=179.30 Aligned_cols=284 Identities=19% Similarity=0.265 Sum_probs=206.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCC----cccccChHHHhhhCceeeeee-------------------e
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHG----TTITDWMQQEQERGITITSAS-------------------V 66 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~----~~~~d~~~~e~~rgiTi~~~~-------------------~ 66 (1021)
.|+++|.+|+|||||+..|. .|+++.| .+.+-.+++|.|.|-|..... .
T Consensus 135 RVAVVGNVDAGKSTLLGVLT--------HgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~ 206 (641)
T KOG0463|consen 135 RVAVVGNVDAGKSTLLGVLT--------HGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGH 206 (641)
T ss_pred EEEEEecccCCcceeEeeee--------ecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCC
Confidence 58999999999999999884 2444443 223445667777776643221 1
Q ss_pred EEEeec--ccCceeEEEEcCCCCCCcHHHHHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 67 SIFWEV--NKFKYMINIIDTPGHVDFTIEVERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 67 ~~~~~~--~~~~~~i~liDtPG~~~f~~~~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
++.|-. ++....|+|||.+||..|.+.+..++. ..|...++|.++.|+...|.+++..+...++|+++|++|+|..
T Consensus 207 ~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 207 NLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMC 286 (641)
T ss_pred cccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccC
Confidence 233332 223457999999999999999988884 6799999999999999999999999999999999999999998
Q ss_pred CCC-HHHHHHHHHHHhC---CceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhc
Q psy5021 143 GAN-YNNCIIDIKKKFN---CIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLS 218 (1021)
Q Consensus 143 ~~~-~~~~~~~i~~~l~---~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (1021)
.++ +++.+.-+.+.+. +.-+|+.+- +-+ .... ....
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVr--s~D------------DVv~-----~A~N--------------------- 326 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVR--SMD------------DVVH-----AAVN--------------------- 326 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEe--ccc------------ceEE-----eecc---------------------
Confidence 777 4666776766663 232222110 000 0000 0000
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCce
Q psy5021 219 NNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKF 298 (1021)
Q Consensus 219 ~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~ 298 (1021)
+...+.+|+|-+|..+|.++ +||.++.+.+|.-.... .+.|.
T Consensus 327 ---------------------------F~Ser~CPIFQvSNVtG~NL-~LLkmFLNlls~R~~~~----------E~~PA 368 (641)
T KOG0463|consen 327 ---------------------------FPSERVCPIFQVSNVTGTNL-PLLKMFLNLLSLRRQLN----------ENDPA 368 (641)
T ss_pred ---------------------------CccccccceEEeccccCCCh-HHHHHHHhhcCcccccc----------cCCCc
Confidence 11236799999999999998 78888888887544321 56788
Q ss_pred EEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc----eeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--
Q psy5021 299 VSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK----VKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK-- 370 (1021)
Q Consensus 299 ~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-- 370 (1021)
-..+..+|+.|++|+++-+..++|+++.+|.+...++. ....|+.| .+++.||..+.+|+...+ .+++
T Consensus 369 eFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSI----HRKRMpV~~VrcGQtASFALKKIkr~ 444 (641)
T KOG0463|consen 369 EFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSI----HRKRMPVGIVRCGQTASFALKKIKRK 444 (641)
T ss_pred ceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhh----hhccccceEEeccchhhhHhhhcchh
Confidence 88999999999999999999999999999999865442 23445554 366789999999998776 3443
Q ss_pred ccccCCeeccCCc
Q psy5021 371 ESSTGDTLCSLSE 383 (1021)
Q Consensus 371 ~~~~gdtl~~~~~ 383 (1021)
++++|..+.+++-
T Consensus 445 ~vRKGMVmVsp~l 457 (641)
T KOG0463|consen 445 DVRKGMVMVSPKL 457 (641)
T ss_pred hhhcceEEecCCC
Confidence 4789999888653
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-18 Score=192.77 Aligned_cols=241 Identities=21% Similarity=0.191 Sum_probs=152.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec----------c----c
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------N----K 74 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------~----~ 74 (1021)
.-+||+||+|+|||-|++.+...+-.-.. ..|||-+-.+..|.... + -
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqege------------------aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~ 537 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGE------------------AGGITQQIGATYFPAENIREKTKELKKDAKKRL 537 (1064)
T ss_pred ceEEEeecccccchHHHHHhhcccccccc------------------ccceeeeccccccchHHHHHHHHHHHhhhhhhc
Confidence 45899999999999999999543222222 22444443333333221 0 0
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIK 154 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~ 154 (1021)
.-..+.+||||||..|+....++...||.||+|||..+|+++||.+-++.++..+.|+|+++||+||.-
T Consensus 538 kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLY----------- 606 (1064)
T KOG1144|consen 538 KVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLY----------- 606 (1064)
T ss_pred CCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhc-----------
Confidence 123588999999999999999999999999999999999999999999999999999999999999851
Q ss_pred HHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhh----HHHHHHHHHHHHHHhcCCCHHHHHHHHc
Q psy5021 155 KKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQ----LSAFDYYNELMLETLSNNDEFFLEKYIN 230 (1021)
Q Consensus 155 ~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~e~~~~~d~~l~e~~l~ 230 (1021)
-|.. ....++.+.+ .+...+|..++-..+.++. |+-|+
T Consensus 607 --------------------------------gwk~--~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efa----EQgLN 648 (1064)
T KOG1144|consen 607 --------------------------------GWKS--CPNAPIVEALKKQKKDVQNEFKERLNNIIVEFA----EQGLN 648 (1064)
T ss_pred --------------------------------cccc--CCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH----Hcccc
Confidence 0100 0000000000 1122233333333222211 11111
Q ss_pred CCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCC
Q psy5021 231 NNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPF 310 (1021)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~ 310 (1021)
..-.+ +.--.+.++-++++||.+|.||..||-+|+++...-... .+. --..+.+.|..+-..++
T Consensus 649 ----~~Lyy----kNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~-------kl~-y~~ev~cTVlEVKvieG 712 (1064)
T KOG1144|consen 649 ----AELYY----KNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE-------KLA-YVDEVQCTVLEVKVIEG 712 (1064)
T ss_pred ----hhhee----ecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH-------HHh-hhhheeeEEEEEEeecC
Confidence 11100 001135678889999999999999999998765322110 000 22345666777777777
Q ss_pred CceEEEEEEEeeEEecCCEEEe
Q psy5021 311 LGSLSFIRIYSGFIKVGDLVYN 332 (1021)
Q Consensus 311 ~g~~~~~RV~sG~l~~gd~v~~ 332 (1021)
.|...-+-+..|.|+.||.+..
T Consensus 713 ~GtTIDViLvNG~L~eGD~Ivv 734 (1064)
T KOG1144|consen 713 HGTTIDVILVNGELHEGDQIVV 734 (1064)
T ss_pred CCceEEEEEEcceeccCCEEEE
Confidence 7877777677777777776654
|
|
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=172.61 Aligned_cols=287 Identities=19% Similarity=0.255 Sum_probs=204.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCc----ccccChHHHhhhCceeeeeeeEEEeec-------------
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGT----TITDWMQQEQERGITITSASVSIFWEV------------- 72 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~----~~~d~~~~e~~rgiTi~~~~~~~~~~~------------- 72 (1021)
.+|++|..|+|||||+..|. .|++++|. .-+-.+++|.+.|-|...+.-.+-|+.
T Consensus 169 RvAVlGg~D~GKSTLlGVLT--------QgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~ta 240 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLT--------QGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTA 240 (591)
T ss_pred EEEEecCcccCcceeeeeee--------cccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccH
Confidence 58999999999999999884 34555541 123456888888877554433333332
Q ss_pred ----ccCceeEEEEcCCCCCCcHHHHHHHhhc--cCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-C
Q psy5021 73 ----NKFKYMINIIDTPGHVDFTIEVERSLRV--LDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA-N 145 (1021)
Q Consensus 73 ----~~~~~~i~liDtPG~~~f~~~~~~~l~~--~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~-~ 145 (1021)
+.....++|||.+||..|...+..++.. .|.|++||+|..|+...|++++-.+...++|++++++|||+... .
T Consensus 241 EEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 241 EEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred HHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchh
Confidence 1345689999999999999999998864 69999999999999999999999999999999999999999754 3
Q ss_pred HHHHHHHHHHHhC---CceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCH
Q psy5021 146 YNNCIIDIKKKFN---CIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDE 222 (1021)
Q Consensus 146 ~~~~~~~i~~~l~---~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~ 222 (1021)
.++++.++.+.+. +..+|..+.
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt------------------------------------------------------- 345 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVT------------------------------------------------------- 345 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEee-------------------------------------------------------
Confidence 6888888887763 332222110
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEE
Q psy5021 223 FFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLV 302 (1021)
Q Consensus 223 ~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V 302 (1021)
+.++..++..+ ...++++|+|+.|+.+|.|++ |+..+...||+-.... +.......|.-..|
T Consensus 346 -----------~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~-----e~~~L~q~~~eFqv 407 (591)
T KOG1143|consen 346 -----------TKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAE-----ERIQLVQLPAEFQV 407 (591)
T ss_pred -----------chHHHHHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChH-----HHHHHhcCcceeeH
Confidence 12232333333 456789999999999999995 4555555665433211 00111334566678
Q ss_pred EEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc----eeeEeceEEEeecCCeeccccccCCCEEEEe-cCC---cccc
Q psy5021 303 FKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK----VKEKIFRILRMFANSKKDINDAHFGDIVVIV-GLK---ESST 374 (1021)
Q Consensus 303 ~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-gl~---~~~~ 374 (1021)
..+|..|.+|.+.-+-.-+|.++.|+.+.+.+.. .+.++..|. +++.++..+.||+-..+. +.. .++.
T Consensus 408 dEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~----Rnr~acrvvraGqaAslsl~d~D~~~LR~ 483 (591)
T KOG1143|consen 408 DEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR----RNRQACRVVRAGQAASLSLNDPDGVSLRR 483 (591)
T ss_pred hHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee----ccccceeeecCccceeeeccCCCccchhc
Confidence 8899999999999999999999999999875432 345666664 456778889999987774 211 2566
Q ss_pred CCeeccC
Q psy5021 375 GDTLCSL 381 (1021)
Q Consensus 375 gdtl~~~ 381 (1021)
|..+...
T Consensus 484 GMVl~~~ 490 (591)
T KOG1143|consen 484 GMVLAEI 490 (591)
T ss_pred ceEEeec
Confidence 7666554
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=202.68 Aligned_cols=239 Identities=15% Similarity=0.188 Sum_probs=170.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++||+|+|||||+|+|.. ...+.|+ ..|.|++.....+.+. ++.++++||||+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg---~~~~vgn---------------~pGvTve~k~g~~~~~----~~~i~lvDtPG~ 60 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTG---ARQRVGN---------------WAGVTVERKEGQFSTT----DHQVTLVDLPGT 60 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhC---CCCccCC---------------CCCceEeeEEEEEEcC----ceEEEEEECCCc
Confidence 35799999999999999999953 2222222 2577888777777777 889999999999
Q ss_pred CCcHHH----------HHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC-CCHHHHHHHHH
Q psy5021 88 VDFTIE----------VERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG-ANYNNCIIDIK 154 (1021)
Q Consensus 88 ~~f~~~----------~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~-~~~~~~~~~i~ 154 (1021)
.+|... ...++ ..+|++++|+|+++... ...++.++.+.++|+++++||+|+.. .......+++.
T Consensus 61 ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~ 138 (772)
T PRK09554 61 YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALS 138 (772)
T ss_pred cccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHH
Confidence 888532 11232 37899999999988533 34567788889999999999999863 34556678888
Q ss_pred HHhCCceeeeeeecccC-CceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCC-CHHHHHHHHcC-
Q psy5021 155 KKFNCIVLPINFNIGIE-ENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNN-DEFFLEKYINN- 231 (1021)
Q Consensus 155 ~~l~~~~~~~~~p~~~~-~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~-d~~l~e~~l~~- 231 (1021)
+.+|.+++++..+.+++ +.+.+.++... ........+.|++..+.+.+.+..+.+.+++. ++.++.+|+++
T Consensus 139 ~~LG~pVvpiSA~~g~GIdeL~~~I~~~~------~~~~~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEgD 212 (772)
T PRK09554 139 ARLGCPVIPLVSTRGRGIEALKLAIDRHQ------ANENVELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEGD 212 (772)
T ss_pred HHhCCCEEEEEeecCCCHHHHHHHHHHhh------hccCCcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcCc
Confidence 99999888888776655 22222221111 01111224566677677777777777777665 78899999998
Q ss_pred CCCHH------HHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhC
Q psy5021 232 NYSIN------DIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYL 276 (1021)
Q Consensus 232 ~~~~~------~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~l 276 (1021)
....+ +..+.+++.+......|.+++|+.+..+++.+++.++...
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 213 IYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred hHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 43333 4445566665555557888999999999999999998654
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=172.43 Aligned_cols=117 Identities=25% Similarity=0.299 Sum_probs=89.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+.--|||+|.+|+|||||+|+|+.+.-++.+. ...|+.+ +-+|| ...+ ++++.|+||||
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~----k~QTTR~-----~I~GI--------~t~~----~~QiIfvDTPG 63 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSP----KPQTTRN-----RIRGI--------VTTD----NAQIIFVDTPG 63 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecC----Ccchhhh-----heeEE--------EEcC----CceEEEEeCCC
Confidence 34568999999999999999999777666541 1111111 11122 1222 78999999999
Q ss_pred CC--------CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 87 HV--------DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 87 ~~--------~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
.. -....+..++..+|.+++|||+.++....++.+++.++..+.|+++++||+|+...
T Consensus 64 ih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 64 IHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred CCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 62 22456777889999999999999999999999999998878999999999998643
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-17 Score=164.97 Aligned_cols=119 Identities=31% Similarity=0.381 Sum_probs=92.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+.|+|+|+.|+|||||+++|....... ...+++|.......+.+.. +.++.+++|||||+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~------------------~~~~~~t~~~~~~~~~~~~-~~~~~~~iiDtpG~~ 61 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA------------------GEAGGITQHIGAFEVPAEV-LKIPGITFIDTPGHE 61 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc------------------ccCCCeEEeeccEEEeccc-CCcceEEEEeCCCcH
Confidence 368999999999999999996322110 0223455544433343320 136789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCH
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANY 146 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~ 146 (1021)
+|...+..+++.+|++++|+|++++...++...++.+...++|+++|+||+|+...+.
T Consensus 62 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 119 (168)
T cd01887 62 AFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP 119 (168)
T ss_pred HHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH
Confidence 9998889999999999999999999888888888888889999999999999865443
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=172.70 Aligned_cols=181 Identities=24% Similarity=0.280 Sum_probs=130.7
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh-hh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH-AD 726 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~-~~ 726 (1021)
.+++..++++|.+|+|||||+|+|++....+.+.... +|.......+..++.++.|+||||. +.
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~Q---------------TTR~~I~GI~t~~~~QiIfvDTPGih~p 67 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQ---------------TTRNRIRGIVTTDNAQIIFVDTPGIHKP 67 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcc---------------hhhhheeEEEEcCCceEEEEeCCCCCCc
Confidence 4678889999999999999999999988777665442 2222223335567899999999992 21
Q ss_pred -------hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 727 -------YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 727 -------~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
..+....++..+|+++||||++++....++..+..++..+.| +|+++||+|...++.... ..+..+...
T Consensus 68 k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p-vil~iNKID~~~~~~~l~---~~~~~~~~~ 143 (298)
T COG1159 68 KHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTP-VILVVNKIDKVKPKTVLL---KLIAFLKKL 143 (298)
T ss_pred chHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCC-eEEEEEccccCCcHHHHH---HHHHHHHhh
Confidence 244455667889999999999998888888888888887778 888999999987543222 222222233
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCC------CCCCCCeeEEEEEEEe
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPN------RITDKPFLMPIEDVFS 862 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~------~~~~~p~~~~I~~~~~ 862 (1021)
..| ..++|+||++|. +++.|++.+..++|... ..+|.|.+|.+.++.+
T Consensus 144 ~~f----~~ivpiSA~~g~-----------n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiR 197 (298)
T COG1159 144 LPF----KEIVPISALKGD-----------NVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIR 197 (298)
T ss_pred CCc----ceEEEeeccccC-----------CHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHH
Confidence 333 379999999884 88999999998886422 2356677776665544
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=163.08 Aligned_cols=147 Identities=24% Similarity=0.298 Sum_probs=105.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh-----
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY----- 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~----- 727 (1021)
.++.+|.+|+|||||+|+|++....+++ ..|+|++.....+++.+..+.|+|+||..++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n----------------~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGN----------------WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEE----------------STTSSSEEEEEEEEETTEEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecC----------------CCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCc
Confidence 5688999999999999999996644433 3488999999999999999999999995433
Q ss_pred -HHHHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 728 -IKNMITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 728 -~~~~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
-+.+..++ ..+|++++|+||++ ..+....+..+..+|+| +|+|+||+|...... +.-....+.+.+|
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P-~vvvlN~~D~a~~~g----~~id~~~Ls~~Lg--- 135 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIP-VVVVLNKMDEAERKG----IEIDAEKLSERLG--- 135 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSS-EEEEEETHHHHHHTT----EEE-HHHHHHHHT---
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCC-EEEEEeCHHHHHHcC----CEECHHHHHHHhC---
Confidence 22233333 57999999999986 34556666777889999 999999999875221 1111222333344
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhh
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVL 838 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l 838 (1021)
+|++++||.++ +|+++|+++|
T Consensus 136 --~pvi~~sa~~~-----------~g~~~L~~~I 156 (156)
T PF02421_consen 136 --VPVIPVSARTG-----------EGIDELKDAI 156 (156)
T ss_dssp --S-EEEEBTTTT-----------BTHHHHHHHH
T ss_pred --CCEEEEEeCCC-----------cCHHHHHhhC
Confidence 68999999987 4889998864
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=179.15 Aligned_cols=116 Identities=22% Similarity=0.188 Sum_probs=101.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
....|||+|.+|+|||||+|+|+.+...+.. ...|+|+++-...+.|+ +..+.||||+|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-----------------~~aGTTRD~I~~~~e~~----~~~~~liDTAG 235 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-----------------DIAGTTRDSIDIEFERD----GRKYVLIDTAG 235 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-----------------CCCCccccceeeeEEEC----CeEEEEEECCC
Confidence 4577999999999999999999977766654 35688999988999999 89999999999
Q ss_pred CC----------CcH-HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 87 HV----------DFT-IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~----------~f~-~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
.. .|+ ..+..++..+|.+++|+||.+|+..|+..+...+...+.++++++||+|+..
T Consensus 236 iRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~ 303 (444)
T COG1160 236 IRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVE 303 (444)
T ss_pred CCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCC
Confidence 62 332 4567888999999999999999999999999999999999999999999854
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=161.81 Aligned_cols=159 Identities=36% Similarity=0.423 Sum_probs=117.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhhhHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~~~~ 729 (1021)
+.+++|++++|||||+++|++... ......+.|.+.....+... +..+.+|||||+..|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV----------------AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc----------------ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH
Confidence 468899999999999999987431 11123456666655555553 67899999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc-ccCCCceE
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY-DFDGENTK 808 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 808 (1021)
.+..++..+|++++|+|++++...++.+.+..+...++| +++|+||+|+.... .+.....+..+.... ......++
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDKPNAN--PERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceeccccc--HHHHHHHHHHhhccccccccCcCc
Confidence 888889999999999999998888899888888889999 89999999987521 122222333222111 00123468
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++||++|. |+++|+++|.+.
T Consensus 143 ~~~~Sa~~~~-----------gi~~l~~~l~~~ 164 (168)
T cd01887 143 IVPTSAKTGE-----------GIDDLLEAILLL 164 (168)
T ss_pred EEEeecccCC-----------CHHHHHHHHHHh
Confidence 9999999873 899999998763
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=143.65 Aligned_cols=85 Identities=28% Similarity=0.393 Sum_probs=80.5
Q ss_pred CCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcccc
Q psy5021 295 SNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESST 374 (1021)
Q Consensus 295 ~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~ 374 (1021)
++||+++|||+.+|++.|+++|+|||||+|++||.|++.. ++.+++.+||.++|.++.++++|.||||+++.|++++.+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~ 79 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRV 79 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcC
Confidence 3789999999999999999999999999999999999877 667899999999999999999999999999999999999
Q ss_pred CCeecc
Q psy5021 375 GDTLCS 380 (1021)
Q Consensus 375 gdtl~~ 380 (1021)
||||++
T Consensus 80 Gdtl~~ 85 (85)
T cd03690 80 GDVLGD 85 (85)
T ss_pred ccccCC
Confidence 999963
|
This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=178.37 Aligned_cols=116 Identities=20% Similarity=0.156 Sum_probs=84.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|++|+|||||+++|+.....+.. ...+.|.......+.+. +++++||||||
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-----------------~k~~tTr~~~~~~~~~~----~~qi~~~DTpG 109 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-----------------PKVQTTRSIITGIITLK----DTQVILYDTPG 109 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeecc-----------------CCCCCccCcEEEEEEeC----CeEEEEEECCC
Confidence 3458999999999999999999754322211 11123333323334555 77899999999
Q ss_pred CCCc--------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 87 HVDF--------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f--------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
+.+. ......+++.+|++|+|+|+.++.......++..+...+.|.++|+||+|+..
T Consensus 110 ~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 110 IFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred cCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 8543 22233467899999999999988877777777777778889999999999853
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=173.22 Aligned_cols=111 Identities=21% Similarity=0.139 Sum_probs=77.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|++|+|||||+|+|+.....+.. ...+.|........... +.++.|+||||+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs-----------------~~~~TTr~~i~~i~~~~----~~qii~vDTPG~~~ 60 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITS-----------------PKAQTTRNRISGIHTTG----ASQIIFIDTPGFHE 60 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecC-----------------CCCCcccCcEEEEEEcC----CcEEEEEECcCCCC
Confidence 4899999999999999999754332211 01122222111111122 56799999999864
Q ss_pred c--------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 90 F--------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f--------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
. ...+..++..+|++++|+|++.+.... ..++..+...+.|+++|+||+|+.
T Consensus 61 ~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 61 KKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred CcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 3 223566789999999999999876554 566677777899999999999985
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-17 Score=159.52 Aligned_cols=109 Identities=18% Similarity=0.276 Sum_probs=82.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|.+|+|||||+|+|.... .+.|+ -+|.|+......+.+. +..+.|+||||..+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~---~~v~n---------------~pG~Tv~~~~g~~~~~----~~~~~lvDlPG~ys 59 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK---QKVGN---------------WPGTTVEKKEGIFKLG----DQQVELVDLPGIYS 59 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS---EEEEE---------------STTSSSEEEEEEEEET----TEEEEEEE----SS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ceecC---------------CCCCCeeeeeEEEEec----CceEEEEECCCccc
Confidence 58999999999999999996443 22222 2478888888888888 89999999999755
Q ss_pred cH------HHHHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 90 FT------IEVERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~------~~~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+. ..+..++ ...|++|+|+||+. ..+...+..++.+.++|+++++||+|+.
T Consensus 60 l~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 60 LSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp SSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred CCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 43 1123344 57899999999987 3556677788899999999999999963
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=171.89 Aligned_cols=128 Identities=32% Similarity=0.439 Sum_probs=109.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccc-ccc-ccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-RAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
+++++|++++|||||+++|+.....+.. +.. ...+.+|..++|+.+++|+......+++++..+++||||||.+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 3678999999999999999864433221 111 23356788899999999999998999999999999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
+..+++.+|++++|+|++.+...++...+..+...++| .++++||+|+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIP-RIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCccCC
Confidence 99999999999999999999999999999999999999 777999999875
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=160.46 Aligned_cols=117 Identities=17% Similarity=0.116 Sum_probs=83.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+++|+.|+|||||+++|....... .+.. . .....|+......+.+. +..+++|||||+.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-------~~~~-----~--~~~~~t~~~~~~~~~~~----~~~~~l~Dt~G~~~ 62 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-------KGLP-----P--SKITPTVGLNIGTIEVG----NARLKFWDLGGQES 62 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-------cCCc-----c--cccCCccccceEEEEEC----CEEEEEEECCCChh
Confidence 78999999999999999997543210 0000 0 11233444455566666 78999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
|...+...++.+|++++|+|+++.-.. .....+..+. ..++|+++++||+|++..
T Consensus 63 ~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 63 LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 999999999999999999999864211 1222223222 357999999999998643
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=143.19 Aligned_cols=88 Identities=34% Similarity=0.691 Sum_probs=83.7
Q ss_pred CCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCc
Q psy5021 850 DKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEV 929 (1021)
Q Consensus 850 ~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i 929 (1021)
++||||+|+++|+++|.|++++|+|++|.+++||++.++|.+ ..++|+||++++.++++|.|||+|+|.|++++..++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~--~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v 79 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG--VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDI 79 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC--cEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHc
Confidence 679999999999999999999999999999999999999975 468999999999999999999999999999999999
Q ss_pred ccceEEeeCC
Q psy5021 930 ERGQVLAKIG 939 (1021)
Q Consensus 930 ~~G~vl~~~~ 939 (1021)
++|+|||+++
T Consensus 80 ~~G~vl~~~~ 89 (91)
T cd03693 80 KRGDVAGDSK 89 (91)
T ss_pred CCcCEEccCC
Confidence 9999999875
|
EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=157.56 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=87.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcH
Q psy5021 12 GIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFT 91 (1021)
Q Consensus 12 ~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~ 91 (1021)
+++|++|+|||||+++|+....... +...++|.........+. ++.+.+|||||+.++.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~i~DtpG~~~~~ 59 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIV-----------------EDTPGVTRDRIYGEAEWG----GREFILIDTGGIEPDD 59 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEee-----------------cCCCCceeCceeEEEEEC----CeEEEEEECCCCCCch
Confidence 5899999999999999974321110 012345555555555666 7889999999999865
Q ss_pred H--------HHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 92 I--------EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 92 ~--------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
. ++...++.+|++++|+|+.++.......+++++...+.|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 60 EGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 4 5567789999999999999988888888888888889999999999998643
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-16 Score=184.39 Aligned_cols=115 Identities=22% Similarity=0.172 Sum_probs=94.1
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+|+|++|+|||||+++|++....+.. ..+|.|.++....+.+. +..+++|||||
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~-----------------~~~gtt~~~~~~~~~~~----~~~~~lvDT~G 230 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS-----------------DIAGTTRDSIDTPFERD----GQKYTLIDTAG 230 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeec-----------------CCCCceEEEEEEEEEEC----CeeEEEEECCC
Confidence 4578999999999999999999854432221 24577887766666666 78899999999
Q ss_pred CCCcH-----------HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFT-----------IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~-----------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+.+.. ..+.++++.+|++|+|+|+++|...++..+++++...++|+++++||+|+.
T Consensus 231 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 231 IRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 75432 234568899999999999999999999999999999999999999999986
|
|
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.7e-17 Score=173.85 Aligned_cols=136 Identities=29% Similarity=0.429 Sum_probs=112.4
Q ss_pred hccCCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe-----------
Q psy5021 642 LFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE----------- 710 (1021)
Q Consensus 642 ~~~~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~----------- 710 (1021)
+++-...+|.++ ...|++||||||.+.|+....-+.....-..+++|..+.|.+||+|+.++.+++.
T Consensus 12 lM~k~~NiRNmS--VIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~ 89 (842)
T KOG0469|consen 12 LMDKKKNIRNMS--VIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFI 89 (842)
T ss_pred Hhccccccccce--EEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHh
Confidence 344444555554 5779999999999999987666654444455678999999999999998887652
Q ss_pred -----eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 711 -----SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 711 -----~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
.++..+++||.|||-+|.+....+++..|+|++|||+-+|+.-||+..+..+....+++ ++++||+|..
T Consensus 90 k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkP-vlv~NK~DRA 163 (842)
T KOG0469|consen 90 KQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLVMNKMDRA 163 (842)
T ss_pred cCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccc-eEEeehhhHH
Confidence 24567899999999999999999999999999999999999999999999999888874 5688999954
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=183.19 Aligned_cols=115 Identities=21% Similarity=0.137 Sum_probs=93.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
..-+|+++|++|+|||||+++|+.....+.. ...|.|.++....+.+. +..+.+|||||
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-----------------~~~gtt~~~~~~~~~~~----~~~~~liDT~G 229 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS-----------------DIAGTTRDSIDIPFERN----GKKYLLIDTAG 229 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecC-----------------CCCCceECcEeEEEEEC----CcEEEEEECCC
Confidence 3468999999999999999999754332211 23467777666666666 67899999999
Q ss_pred CCCcHH-----------HHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTI-----------EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~-----------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+.++.. .+..+++.+|++|+|+|++++...++..+++.+...++|+++|+||+|+.
T Consensus 230 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 230 IRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred ccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 865532 23567899999999999999999999999999999999999999999986
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=139.63 Aligned_cols=83 Identities=45% Similarity=0.771 Sum_probs=79.5
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCe
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDT 377 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdt 377 (1021)
|+++|||+.+|++.|+++|+|||+|+|++||.|++...++++++.+|+.++|.+..++++|.||||+++.|++++++|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 57999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred ecc
Q psy5021 378 LCS 380 (1021)
Q Consensus 378 l~~ 380 (1021)
||.
T Consensus 81 l~~ 83 (83)
T cd04092 81 LVT 83 (83)
T ss_pred EeC
Confidence 974
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=154.82 Aligned_cols=116 Identities=22% Similarity=0.188 Sum_probs=86.4
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|++|+|||||+++|+........ ..++.|.......+.+. +..+++|||||+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~----~~~~~iiDtpG~ 60 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS-----------------DIAGTTRDSIDVPFEYD----GKKYTLIDTAGI 60 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc-----------------CCCCCccCceeeEEEEC----CeeEEEEECCCC
Confidence 467999999999999999999743221111 12344444433444555 667899999998
Q ss_pred CCcH-----------HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 88 VDFT-----------IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 88 ~~f~-----------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
.++. .....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+...
T Consensus 61 ~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 61 RRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred ccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 6542 22345678999999999999998888888888888889999999999998644
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=155.00 Aligned_cols=119 Identities=20% Similarity=0.183 Sum_probs=84.6
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee--eeEEEeecccCcee
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA--SVSIFWEVNKFKYM 78 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~--~~~~~~~~~~~~~~ 78 (1021)
|+ .....++|+++|+.|+|||||+++|.... .. ...+.|+... ...+.+. +....
T Consensus 1 ~~-~~~~~~~v~v~G~~~~GKSsli~~l~~~~--~~------------------~~~~~t~~~~~~~~~~~~~--~~~~~ 57 (169)
T cd04114 1 ME-DYDFLFKIVLIGNAGVGKTCLVRRFTQGL--FP------------------PGQGATIGVDFMIKTVEIK--GEKIK 57 (169)
T ss_pred CC-CCCceeEEEEECCCCCCHHHHHHHHHhCC--CC------------------CCCCCceeeEEEEEEEEEC--CEEEE
Confidence 55 24567999999999999999999996311 11 0112333322 2233333 33467
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH----HHHhhcCCCEEEEEeCcCCC
Q psy5021 79 INIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW----FQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 79 i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~----~~~~~~~~p~iiviNK~D~~ 142 (1021)
+.+|||||+.+|...+..+++.+|++++|+|++++...+....| +.....++|+++++||+|+.
T Consensus 58 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 58 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 88999999999999999999999999999999876544333344 33334579999999999985
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-17 Score=173.61 Aligned_cols=129 Identities=30% Similarity=0.409 Sum_probs=111.7
Q ss_pred ceeeeeeeeeccchhhhhhhcccccccc--ccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIY--GGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
-.+|+..|.++||||...+++...+.+. +..-...+++|-...|++||+|+....+.|+|.++++++||||||-+|.-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 4679999999999999999875443332 11112334678889999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
...+.++.-|+++.|+|++.|+..||...|..+..+++| -+..+||||...
T Consensus 118 everclrvldgavav~dasagve~qtltvwrqadk~~ip-~~~finkmdk~~ 168 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIP-AHCFINKMDKLA 168 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCc-hhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999 566889999764
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=154.54 Aligned_cols=116 Identities=20% Similarity=0.231 Sum_probs=82.1
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
..++|+++|+.|+|||||+++|.... ... +....++.......+.+. +....+++|||||
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~--~~~~~l~i~D~~G 61 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGT--FSE----------------RQGNTIGVDFTMKTLEIE--GKRVKLQIWDTAG 61 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--Ccc----------------cCCCccceEEEEEEEEEC--CEEEEEEEEECCC
Confidence 56899999999999999999996321 110 001111222222334443 2246889999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hh---hcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~---~~~~p~iiviNK~D~~ 142 (1021)
+.+|...+...++.+|++++|+|+++....+....|.. +. ..++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 62 QERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred hHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999999999999999999998655444444422 22 3478999999999985
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.2e-16 Score=180.37 Aligned_cols=117 Identities=18% Similarity=0.176 Sum_probs=90.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+..++|+++|++|+|||||+++|+.....+.. ...|+|.+.....+.+. +..+.|||||
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-----------------~~~gtT~d~~~~~~~~~----~~~~~l~DTa 267 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVD-----------------DVAGTTVDPVDSLIELG----GKTWRFVDTA 267 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccccc-----------------CCCCccCCcceEEEEEC----CEEEEEEECC
Confidence 35689999999999999999999743322111 23455665555556666 6788999999
Q ss_pred CCC---------CcHHH--HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 86 GHV---------DFTIE--VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~---------~f~~~--~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|.. +|... ...+++.+|++|+|+|++++...+...++..+...++|+|+|+||+|+..
T Consensus 268 G~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 268 GLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred CccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 963 22222 23467899999999999999999999999888889999999999999864
|
|
| >cd03694 GTPBP_II Domain II of the GP-1 family of GTPase | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-16 Score=137.71 Aligned_cols=85 Identities=22% Similarity=0.430 Sum_probs=80.5
Q ss_pred eeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec--CCeeEEEEEEEEecccccceeccCceEEEEecccCccCcc
Q psy5021 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY--KQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVE 930 (1021)
Q Consensus 853 ~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~--~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~ 930 (1021)
|+|+|+++|+++|.|+|++|+|++|.+++||++.+.|. +++..++|+||++++.++++|.|||+|+++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 57999999999999999999999999999999999997 3457899999999999999999999999999999999999
Q ss_pred cceEEee
Q psy5021 931 RGQVLAK 937 (1021)
Q Consensus 931 ~G~vl~~ 937 (1021)
+|+|||+
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999974
|
This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=166.26 Aligned_cols=172 Identities=19% Similarity=0.184 Sum_probs=114.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh------
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD------ 726 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~------ 726 (1021)
.++++|.+|+|||||+|+|++....+... ..++|.+.....+...+.++.||||||+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~---------------~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSP---------------KAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCC---------------CCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 35788999999999999999864332221 123344333333444567899999999643
Q ss_pred --hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 727 --YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 727 --~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
+.+.+..++..+|++++|+|+++....+ ...+..+...+.| +++|+||+|+.+... ....+..+....++
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~-- 138 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRP-VVLTRNKLDNKFKDK----LLPLIDKYAILEDF-- 138 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCC-EEEEEECeeCCCHHH----HHHHHHHHHhhcCC--
Confidence 2334556778999999999999865544 4455666777888 889999999975322 22233334333333
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCC------CCCCCCeeEEEEEE
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPN------RITDKPFLMPIEDV 860 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~------~~~~~p~~~~I~~~ 860 (1021)
.+++++||++| .|+++|+++|.+.+|... ..++.|.++.+.++
T Consensus 139 --~~v~~iSA~~g-----------~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ 187 (270)
T TIGR00436 139 --KDIVPISALTG-----------DNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEI 187 (270)
T ss_pred --CceEEEecCCC-----------CCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHH
Confidence 26899999988 389999999988775322 12345555544444
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=153.25 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=74.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCce-eEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKY-MINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~-~i~liDtPG~~ 88 (1021)
||+++|++|+|||||+++|......+ +. ..+.|+......+.+. ++ .++||||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v---~~---------------~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI---AD---------------YPFTTLVPNLGVVRVD----DGRSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc---cC---------------CCccccCCcceEEEcC----CCCeEEEEecCccc
Confidence 79999999999999999996322110 00 1123444443444554 44 89999999974
Q ss_pred C-------cHHHHHHHhhccCeEEEEEeCCCC-CchhHHHHH-HHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 89 D-------FTIEVERSLRVLDGAVIIICASSG-IQPQTETVW-FQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~-------f~~~~~~~l~~~D~~ilvvda~~g-~~~~t~~~~-~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
+ +...+.+.+..+|++++|+|++++ -..+....| +.+.. .++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 60 EGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred CcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 2 344555667789999999999986 333333333 23322 3689999999999853
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3) | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-16 Score=135.96 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=77.8
Q ss_pred EEEEEEee---cCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCC
Q psy5021 300 SLVFKIFH---DPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGD 376 (1021)
Q Consensus 300 ~~V~k~~~---~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gd 376 (1021)
++|||+.+ ||+.|+++|+|||||+|++||.|++...++.+++.+|+.++|.+..++++|.||||+++.|++++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 58999999 999999999999999999999999988887899999999999999999999999999999999999999
Q ss_pred eecc
Q psy5021 377 TLCS 380 (1021)
Q Consensus 377 tl~~ 380 (1021)
|||+
T Consensus 81 tl~~ 84 (85)
T cd03689 81 TLTE 84 (85)
T ss_pred EeeC
Confidence 9985
|
Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=152.05 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=77.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.++|||||+++|..... . ++. .|+......+.+. +..+++|||||+.+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~--~------------~~~-------~t~~~~~~~~~~~----~~~~~i~Dt~G~~~ 55 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV--V------------TTI-------PTIGFNVETVTYK----NLKFQVWDLGGQTS 55 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC--c------------CcC-------CccCcCeEEEEEC----CEEEEEEECCCCHH
Confidence 489999999999999999953111 0 010 1222222234454 78899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHH-HHh---hcCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWF-QSQ---KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~-~~~---~~~~p~iiviNK~D~~~~ 144 (1021)
|...+..+++.+|++|+|+|+++..... ..+.|. .+. ..++|+++++||+|+..+
T Consensus 56 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 56 IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 9999999999999999999998743221 123332 222 247899999999998654
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7e-16 Score=172.90 Aligned_cols=179 Identities=20% Similarity=0.234 Sum_probs=123.2
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh-
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD- 726 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~- 726 (1021)
+-++..++++|.+|+|||||+|+|++....+. ....+.|.+.....+..++.++.||||||+.+
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv---------------s~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV---------------TPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeec---------------cCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 34567889999999999999999997542211 11224455555555667788999999999732
Q ss_pred -------hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 727 -------YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 727 -------~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
+.+....++..||++|+|+|+.++.......++..+...+.| .|+|+||+|+.+. ... ++.+.+..
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p-~IlViNKiDl~~~--~~~----~~~~~l~~ 186 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIV-PIFLLNKIDIESK--YLN----DIKAFLTE 186 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEEhhcCccc--cHH----HHHHHHHh
Confidence 233334457899999999999887666666677777777888 5678999998642 122 23333332
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC------CCCCCCCeeEEEEEEEe
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP------NRITDKPFLMPIEDVFS 862 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~------~~~~~~p~~~~I~~~~~ 862 (1021)
.. ....++++||++| .|+++|+++|.+.++.. ...+|.|.++.+.++.+
T Consensus 187 ~~---~~~~i~~iSAktg-----------~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiR 241 (339)
T PRK15494 187 NH---PDSLLFPISALSG-----------KNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITR 241 (339)
T ss_pred cC---CCcEEEEEeccCc-----------cCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 22 1247899999988 38999999998877532 22456677777665544
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=153.19 Aligned_cols=114 Identities=20% Similarity=0.165 Sum_probs=79.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+-..|+++|+.|+|||||+++|.... .. .+ ..|+......+.+. ++.+++||||
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~--~~------------~~-------~~t~g~~~~~~~~~----~~~l~l~D~~ 66 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGED--ID------------TI-------SPTLGFQIKTLEYE----GYKLNIWDVG 66 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCC--CC------------Cc-------CCccccceEEEEEC----CEEEEEEECC
Confidence 345679999999999999999996321 00 00 01222122234444 6889999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHH----hhcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQS----QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~----~~~~~p~iiviNK~D~~~~ 144 (1021)
|+..|...+..+++.+|++++|+|+++..... ....+... ...+.|+++++||+|+...
T Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 67 GQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 99999988999999999999999998762221 11222222 2357999999999998643
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-16 Score=135.46 Aligned_cols=83 Identities=53% Similarity=0.959 Sum_probs=79.5
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCe
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDT 377 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdt 377 (1021)
++++|||+.+|++.|+++|+|||+|+|++||.|++...++.+++.+|+.++|.++.+++++.||||+++.|++++.+|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 57999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred ecc
Q psy5021 378 LCS 380 (1021)
Q Consensus 378 l~~ 380 (1021)
|++
T Consensus 81 l~~ 83 (83)
T cd04088 81 LCD 83 (83)
T ss_pred eeC
Confidence 963
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl |
| >cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-16 Score=136.96 Aligned_cols=87 Identities=76% Similarity=1.184 Sum_probs=81.4
Q ss_pred eeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccc
Q psy5021 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERG 932 (1021)
Q Consensus 853 ~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 932 (1021)
|+|+|+++|+++|.|++++|+|++|++++||++.+.|.+...+++|+||++++.++++|.|||+|+++|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 68999999999999999999999999999999999986545678999999999999999999999999999999999999
Q ss_pred eEEeeCC
Q psy5021 933 QVLAKIG 939 (1021)
Q Consensus 933 ~vl~~~~ 939 (1021)
+|||+++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9998753
|
Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=150.62 Aligned_cols=112 Identities=21% Similarity=0.193 Sum_probs=77.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+++|..++|||||+++|......... + ..|+......+.+. +..+++|||||+.+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~------------~-------~~t~g~~~~~~~~~----~~~~~l~Dt~G~~~ 57 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI------------I-------VPTVGFNVESFEKG----NLSFTAFDMSGQGK 57 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce------------e-------cCccccceEEEEEC----CEEEEEEECCCCHh
Confidence 5899999999999999999642110000 0 01222222233444 78899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH------hhcCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS------QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~------~~~~~p~iiviNK~D~~~~ 144 (1021)
|...+..+++.+|++|+|+|+++...... ...+..+ ...++|+++|+||+|+...
T Consensus 58 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 58 YRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred hHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 99999999999999999999997643211 1122222 1247999999999998653
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=133.93 Aligned_cols=83 Identities=33% Similarity=0.620 Sum_probs=78.9
Q ss_pred CeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCccc
Q psy5021 852 PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVER 931 (1021)
Q Consensus 852 p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~ 931 (1021)
||+|+|+++|+++ .|++++|+|++|++++||++.+.|.+. .++|++|++++.++++|.|||+|+++|++++..++++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~--~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~ 77 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKE--SVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISP 77 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCc--EEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCC
Confidence 7999999999999 999999999999999999999999764 5899999999999999999999999999999999999
Q ss_pred ceEEee
Q psy5021 932 GQVLAK 937 (1021)
Q Consensus 932 G~vl~~ 937 (1021)
|++||+
T Consensus 78 G~vl~~ 83 (83)
T cd03698 78 GDVLCS 83 (83)
T ss_pred CCEEeC
Confidence 999974
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=150.07 Aligned_cols=110 Identities=20% Similarity=0.171 Sum_probs=79.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.|+|||||++++..... .. ...|+......+.+. ...+++|||||+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~-------------------~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~ 55 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VT-------------------TIPTIGFNVETVEYK----NVSFTVWDVGGQDK 55 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CC-------------------CCCCcCcceEEEEEC----CEEEEEEECCCChh
Confidence 489999999999999999974321 00 011222233345555 78899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHH----hhcCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQS----QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~----~~~~~p~iiviNK~D~~~~ 144 (1021)
|...+...++.+|++++|+|++.+. .......+... ...+.|+++|+||+|+...
T Consensus 56 ~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 56 IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 9999999999999999999999762 12223333322 2457999999999998643
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=148.25 Aligned_cols=162 Identities=18% Similarity=0.204 Sum_probs=124.2
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
..-.-.+|-.++|||||+-|+.+.. +...+|.+.|...-...+.+.....++.+|||+|+++|-..
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~--------------F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sl 70 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQ--------------FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSL 70 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCc--------------cccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccc
Confidence 3455678889999999999999843 33335677777666666666555677889999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEE--EEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 731 MITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVV--FLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIv--viNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...|+++|++||+|+|.++.. +.+.+.++..+....-|.+++ |.||+|+.+..+ -..++...+....| .
T Consensus 71 apMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~---V~~~ea~~yAe~~g-----l 142 (200)
T KOG0092|consen 71 APMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERRE---VEFEEAQAYAESQG-----L 142 (200)
T ss_pred ccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhccc---ccHHHHHHHHHhcC-----C
Confidence 999999999999999999854 456677778887776676776 789999986211 12245556666555 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
.++.+||++|. |+++++..|.+.+|..
T Consensus 143 l~~ETSAKTg~-----------Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 143 LFFETSAKTGE-----------NVNEIFQAIAEKLPCS 169 (200)
T ss_pred EEEEEeccccc-----------CHHHHHHHHHHhccCc
Confidence 79999999984 8999999999888644
|
|
| >cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=133.20 Aligned_cols=81 Identities=38% Similarity=0.733 Sum_probs=77.2
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCe
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDT 377 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdt 377 (1021)
|+++|||+.+|++ |+++|+|||+|+|++||.|++...++++++.+|+.++|.++.+++++.||||+++.|++ +.+|||
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~~Gdt 78 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CASGDT 78 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-cccCCE
Confidence 5799999999998 99999999999999999999998888899999999999999999999999999999998 999999
Q ss_pred ecc
Q psy5021 378 LCS 380 (1021)
Q Consensus 378 l~~ 380 (1021)
|++
T Consensus 79 l~~ 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred ecC
Confidence 963
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=149.18 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=79.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.|+|||||+++++...-... ...|............++....+++|||||+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 61 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQ--------------------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--------------------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchh
Confidence 689999999999999999974211000 001111111111112233467899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh--cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~--~~~p~iiviNK~D~~ 142 (1021)
|...+..+++.+|++|+|+|++++...+....| ..+.+ .++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 62 FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 999999999999999999999887655544444 33333 379999999999974
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-15 Score=163.51 Aligned_cols=115 Identities=21% Similarity=0.191 Sum_probs=82.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+...|+++|++|+|||||+|+|+.....+... .. +.|........... +.++.|+||||
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~---~~--------------~tt~~~i~~i~~~~----~~qi~~iDTPG 62 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP---KP--------------QTTRHRIRGIVTED----DAQIIFVDTPG 62 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCC---CC--------------CcccccEEEEEEcC----CceEEEEECCC
Confidence 46689999999999999999997543322110 00 11111111011112 57899999999
Q ss_pred CCCc--------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDF--------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f--------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+.+. ...+..++..+|++++|+|++++.......+++.+...++|+++|+||+|+.
T Consensus 63 ~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 63 IHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred CCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 8654 2445667889999999999999777777788888877789999999999985
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-15 Score=150.43 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=73.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
|+|+++|++|+|||||+++|+....... ...+.|.......+.+. +..+++|||||+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~------------------~~~~~t~~~~~~~~~~~----~~~~~i~Dt~G~~ 58 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA------------------PYPFTTKSLFVGHFDYK----YLRWQVIDTPGLL 58 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC------------------CCCCcccceeEEEEccC----ceEEEEEECCCcC
Confidence 6899999999999999999964321100 01233444333344444 6899999999985
Q ss_pred CcH--------HHHHHHh-hccCeEEEEEeCCCCCc---hhHHHHHHHHhhc--CCCEEEEEeCcCCCC
Q psy5021 89 DFT--------IEVERSL-RVLDGAVIIICASSGIQ---PQTETVWFQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~--------~~~~~~l-~~~D~~ilvvda~~g~~---~~t~~~~~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
+.. .....++ ..+|++|+|+|+++... ......+..+... ++|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 59 DRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred CccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 321 1122222 33699999999987532 2223444555444 799999999999853
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-15 Score=149.91 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=80.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.++|||||+++|+...-.... . .|+.....+..+..++....+++|||||+.+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~------------------~--~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 61 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS------------------Q--HTIGVEFGSKIIRVGGKRVKLQIWDTAGQER 61 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC------------------C--CceeeeEEEEEEEECCEEEEEEEEECcchHH
Confidence 7999999999999999999743211110 0 1111111122222233367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH---hhcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~---~~~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++|+|+|++++...+....| ... ...++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 62 FRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 999999999999999999999987655544444 222 33589999999999985
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-15 Score=149.60 Aligned_cols=112 Identities=16% Similarity=0.197 Sum_probs=77.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeee-eeeEEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITS-ASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~-~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-+|+++|.+|+|||||+++++....... +.+ |+.. -...+.+. +....+++|||||+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~-------------~~~-------t~~~~~~~~~~~~--~~~~~~~i~Dt~G~ 60 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTD-------------YDP-------TIEDSYTKQCEID--GQWAILDILDTAGQ 60 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcc-------------cCC-------CccceEEEEEEEC--CEEEEEEEEECCCC
Confidence 4799999999999999999975322110 000 1110 01112222 22567999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HH----HhhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQ----SQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~----~~~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++++|+|+++....+...-| .. ....++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 61 EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 99999999999999999999999875433222222 22 223578999999999985
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-15 Score=150.52 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=81.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
..++|+++|+.|+|||||+++|.... ... ...|+......+.+. +..+.++||||
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~--~~~-------------------~~~t~~~~~~~~~~~----~~~~~l~D~~G 68 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGE--VVH-------------------TSPTIGSNVEEIVYK----NIRFLMWDIGG 68 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC--CCC-------------------cCCccccceEEEEEC----CeEEEEEECCC
Confidence 35789999999999999999996311 100 012333333455565 78899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchh-HHH-HHHHHhh---cCCCEEEEEeCcCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQ-TET-VWFQSQK---YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~-~~~~~~~---~~~p~iiviNK~D~~~ 143 (1021)
+..|...+..+++.+|++|+|+|+++..... ... +.+.+.. .++|+++++||+|+++
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 69 QESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 9999999999999999999999998753221 122 2233322 3689999999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=140.77 Aligned_cols=127 Identities=22% Similarity=0.175 Sum_probs=99.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+|+|..++||||+++++......+... .++ .+... ..|..|+.....++.+.. ++.+.|+|||||.
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~----~~~--~~s~k--~kr~tTva~D~g~~~~~~---~~~v~LfgtPGq~ 79 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEA----DAS--SVSGK--GKRPTTVAMDFGSIELDE---DTGVHLFGTPGQE 79 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeec----ccc--ccccc--cccceeEeecccceEEcC---cceEEEecCCCcH
Confidence 578999999999999999998655432210 000 00000 034467776666666662 4899999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcC-CCEEEEEeCcCCCCCCH
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK-VPKMIFVNKMDRIGANY 146 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~-~p~iiviNK~D~~~~~~ 146 (1021)
+|...+.-.++.++++|++||++.+.....+++++.....+ +|+++++||.|++.+..
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~p 138 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALP 138 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCC
Confidence 99999999999999999999999998888888888888877 99999999999987654
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=149.37 Aligned_cols=148 Identities=21% Similarity=0.238 Sum_probs=108.9
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH-----
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK----- 729 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~----- 729 (1021)
+.+|.+++|||||+++|++.... ..+...++|.+.........+..+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA---------------IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE---------------eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 35789999999999999974211 1122345666666667777788999999999988543
Q ss_pred ---HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 730 ---NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 730 ---~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
.+...++.+|++++|+|+.++......+++..+...+.| +++|+||+|+.+.... ...+..+++
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~--------~~~~~~~~~---- 132 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDNIKEEDE--------AAEFYSLGF---- 132 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECcccCChHHH--------HHHHHhcCC----
Confidence 445667889999999999987777777777888888888 9999999999763221 111222332
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++|++++ +++++++++|.+.
T Consensus 133 ~~~~~~Sa~~~-----------~gv~~l~~~l~~~ 156 (157)
T cd01894 133 GEPIPISAEHG-----------RGIGDLLDAILEL 156 (157)
T ss_pred CCeEEEecccC-----------CCHHHHHHHHHhh
Confidence 25789999987 3889999988653
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-15 Score=184.81 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=91.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+..++|+++|++|+|||||+++|+.....+.. ...|.|.++....+.+. +..+.|||||
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-----------------~~~gtT~d~~~~~~~~~----~~~~~liDTa 506 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVN-----------------DLAGTTRDPVDEIVEID----GEDWLFIDTA 506 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccC-----------------CCCCCCcCcceeEEEEC----CCEEEEEECC
Confidence 35689999999999999999999754322211 13455666555556666 6788999999
Q ss_pred CCC---------CcHHH--HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 86 GHV---------DFTIE--VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~---------~f~~~--~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|+. +|... ...+++.+|++++|+|++++.+.+...+++.+...++|+++|+||+|+..
T Consensus 507 G~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 507 GIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred CcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 964 22221 34567899999999999999999999999988888999999999999864
|
|
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-16 Score=159.03 Aligned_cols=245 Identities=26% Similarity=0.324 Sum_probs=174.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEee-cc-------------
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWE-VN------------- 73 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~-~~------------- 73 (1021)
.-||+-+||+.|||||++.++. |. .+-.++.|-||.|||+..+++...- .+
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiS---Gv------------~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~ 102 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAIS---GV------------HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSF 102 (466)
T ss_pred eeeecceeccccCcceeeeeec---cc------------eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhcc
Confidence 5799999999999999998872 21 1223567899999999877654321 11
Q ss_pred -------------c------CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-CchhHHHHHHHHhhcCCCEE
Q psy5021 74 -------------K------FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-IQPQTETVWFQSQKYKVPKM 133 (1021)
Q Consensus 74 -------------~------~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-~~~~t~~~~~~~~~~~~p~i 133 (1021)
+ --+.+.|+|+|||.-+...+..+....|+|++++.+++. .++||.+++....-+++..+
T Consensus 103 gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466|consen 103 GSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence 0 014688999999999999999999999999999999876 79999999988888887766
Q ss_pred EE-EeCcCCCCCCH-HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHH
Q psy5021 134 IF-VNKMDRIGANY-NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNE 211 (1021)
Q Consensus 134 iv-iNK~D~~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (1021)
++ -||+|+...+. .+..++|.
T Consensus 183 iilQNKiDli~e~~A~eq~e~I~--------------------------------------------------------- 205 (466)
T KOG0466|consen 183 IILQNKIDLIKESQALEQHEQIQ--------------------------------------------------------- 205 (466)
T ss_pred EEEechhhhhhHHHHHHHHHHHH---------------------------------------------------------
Confidence 55 69999853221 11111111
Q ss_pred HHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccc
Q psy5021 212 LMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNI 291 (1021)
Q Consensus 212 ~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~ 291 (1021)
+|+.+ .. ..-.|++++||.-..+|+.+.++|++.+|-|...
T Consensus 206 ---------------kFi~~-------------t~--ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd--------- 246 (466)
T KOG0466|consen 206 ---------------KFIQG-------------TV--AEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD--------- 246 (466)
T ss_pred ---------------HHHhc-------------cc--cCCCceeeehhhhccChHHHHHHHHhcCCCCccc---------
Confidence 11111 00 1235788889999999999999999999999764
Q ss_pred ccCCCceEEEEEEEeecC--------CCceEEEEEEEeeEEecCCEEEeCCC--------ceeeE--eceEEEeecCCee
Q psy5021 292 NLNSNKFVSLVFKIFHDP--------FLGSLSFIRIYSGFIKVGDLVYNSTK--------KVKEK--IFRILRMFANSKK 353 (1021)
Q Consensus 292 ~~~~~p~~~~V~k~~~~~--------~~g~~~~~RV~sG~l~~gd~v~~~~~--------~~~~~--i~~i~~~~g~~~~ 353 (1021)
...|..+.|.+.|... -.|-++-+-++.|.|+.||.+-.-+. +..++ ..+|..+.+. ..
T Consensus 247 --f~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE-~n 323 (466)
T KOG0466|consen 247 --FTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAE-QN 323 (466)
T ss_pred --cCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhh-hc
Confidence 5677788888877432 34668999999999999999975321 11111 2233333333 34
Q ss_pred ccccccCCCEEEE
Q psy5021 354 DINDAHFGDIVVI 366 (1021)
Q Consensus 354 ~v~~a~aGdIv~i 366 (1021)
+++.|.+|-.+++
T Consensus 324 ~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 324 DLQFAVPGGLIGV 336 (466)
T ss_pred cceeecCCceeee
Confidence 5778888887777
|
|
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=150.44 Aligned_cols=160 Identities=19% Similarity=0.170 Sum_probs=105.1
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|++++|||||+++|+...... .+ .... ....|+......+..++..+.+||||||.+|...+..
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~-~~---------~~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 69 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKY-KG---------LPPS--KITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDK 69 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccc-cC---------Cccc--ccCCccccceEEEEECCEEEEEEECCCChhhHHHHHH
Confidence 4678999999999999998642110 00 0011 1122333344456667889999999999999998888
Q ss_pred HhhhCCEEEEEEECCCCCc-HHHHHHHHHHH----HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 734 GAAQMDGAILVCSAVDGPM-PQTREHILLAR----QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~----~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
.+..+|++++|+|+++... .+...++..+. ..++| +++++||+|+.+. ...+.+.+.+.......+. ..++
T Consensus 70 ~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~--~~~~ 145 (167)
T cd04160 70 YYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDA-LSVEEIKEVFQDKAEEIGR--RDCL 145 (167)
T ss_pred HhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccC-CCHHHHHHHhccccccccC--CceE
Confidence 9999999999999986432 22233333222 24778 9999999998652 1123233333333222222 3468
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++||++| +|+++++++|.+
T Consensus 146 ~~~~Sa~~g-----------~gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEG-----------TGVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCC-----------cCHHHHHHHHhc
Confidence 999999988 488999998853
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=148.67 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=80.0
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHH
Q psy5021 13 IIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTI 92 (1021)
Q Consensus 13 iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~ 92 (1021)
++|+.|+|||||++++..... .. ...+|+|+......+.+. +..+++|||||+.+|..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~---~~---------------~~~~~~t~~~~~~~~~~~----~~~~~liDtpG~~~~~~ 58 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ---KV---------------GNWPGVTVEKKEGRFKLG----GKEIEIVDLPGTYSLSP 58 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc---cc---------------cCCCCcccccceEEEeeC----CeEEEEEECCCccccCC
Confidence 589999999999999953211 10 013477777777777777 67899999999988764
Q ss_pred H------HHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 93 E------VERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 93 ~------~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
. ...++. .+|++|+|+|+... .+....+.++...++|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 59 YSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred CChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 2 344454 89999999999874 3334455667778999999999999854
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-15 Score=148.13 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=70.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC-
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH- 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~- 87 (1021)
++|+++|++|+|||||+++|..... . + .....+.|. .. ++|||||.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~---~----------------------~--~~~~~v~~~----~~--~~iDtpG~~ 48 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT---L----------------------A--RKTQAVEFN----DK--GDIDTPGEY 48 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc---c----------------------C--ccceEEEEC----CC--CcccCCccc
Confidence 4799999999999999999842110 0 0 011223443 11 37999996
Q ss_pred ---CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 88 ---VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 88 ---~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
.++..++..+++.+|++|+|+|++++.......++.. ..+.|+++++||+|++..
T Consensus 49 ~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 49 FSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA 106 (158)
T ss_pred cCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc
Confidence 4566666777899999999999998865544433332 347899999999998643
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.3e-15 Score=148.26 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=77.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|+.++|||||+++|.... .. ++. .|+......+.+. ...+++|||||+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~--~~------------~~~-------~t~g~~~~~~~~~----~~~~~l~Dt~G~ 63 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQ--SV------------TTI-------PTVGFNVETVTYK----NVKFNVWDVGGQ 63 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCC--Cc------------ccc-------CCcccceEEEEEC----CEEEEEEECCCC
Confidence 4589999999999999999995311 00 000 1111111223334 788999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCc-hhHHHHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQ-PQTETVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~-~~t~~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
..|...+..+++.+|++|+|+|+++... ......|.... ..++|+++++||+|+..
T Consensus 64 ~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 64 DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 9999888899999999999999987432 22233333332 24689999999999864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=141.05 Aligned_cols=175 Identities=17% Similarity=0.185 Sum_probs=127.3
Q ss_pred chhhhccCCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEE
Q psy5021 638 PLRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYA 717 (1021)
Q Consensus 638 P~~e~~~~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~ 717 (1021)
|...+..+...++....-++|-.++|||||++++.... +......+.|+...+....++.....+.
T Consensus 9 ~~~~~~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~--------------fd~~YqATIGiDFlskt~~l~d~~vrLQ 74 (221)
T KOG0094|consen 9 ACQTMATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDK--------------FDNTYQATIGIDFLSKTMYLEDRTVRLQ 74 (221)
T ss_pred HHHhccccCccceEEEEEEEccCccchHHHHHHHHHhh--------------hcccccceeeeEEEEEEEEEcCcEEEEE
Confidence 44445556677888888999999999999999999843 2223334455555555555554456678
Q ss_pred EEecCChhhhHHHHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC--CeEEEEEeeccccchhhHHHHHHHHH
Q psy5021 718 HVDCPGHADYIKNMITGAAQMDGAILVCSAVD-GPMPQTREHILLARQV-GV--PNIVVFLNKADCVQDKELLDLVEMEI 793 (1021)
Q Consensus 718 liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~-g~~~qt~e~l~~~~~~-~i--p~iIvviNK~Dl~~~~~~~~~~~~~~ 793 (1021)
+|||+|+++|......|++++++||+|+|.++ ..+.++..++.-+... |- .-|++|.||.||.+..+. . .++-
T Consensus 75 lWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv-s--~eEg 151 (221)
T KOG0094|consen 75 LWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV-S--IEEG 151 (221)
T ss_pred EEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh-h--HHHH
Confidence 89999999999999999999999999999886 4567888888766654 33 336778899999974322 1 1222
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
....+.++ +.++.+||+.|. |+..|+..+...+|.+
T Consensus 152 ~~kAkel~-----a~f~etsak~g~-----------NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 152 ERKAKELN-----AEFIETSAKAGE-----------NVKQLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHhC-----cEEEEecccCCC-----------CHHHHHHHHHHhccCc
Confidence 23444443 579999999884 8899999988877654
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-15 Score=151.95 Aligned_cols=113 Identities=20% Similarity=0.125 Sum_probs=80.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+-..|+++|+.|+|||||+++|....- .. ...|+......+.+. +..+.++||||
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~--~~-------------------~~~T~~~~~~~i~~~----~~~~~l~D~~G 72 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRL--AQ-------------------HVPTLHPTSEELTIG----NIKFKTFDLGG 72 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--cc-------------------cCCccCcceEEEEEC----CEEEEEEECCC
Confidence 456789999999999999999953211 00 011333333455666 78899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHH----hhcCCCEEEEEeCcCCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQS----QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~----~~~~~p~iiviNK~D~~~~ 144 (1021)
+.+|...+..+++.+|++++|+|+++.-.. .....+... ...+.|+++++||+|+...
T Consensus 73 ~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~ 135 (190)
T cd00879 73 HEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA 135 (190)
T ss_pred CHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC
Confidence 999988889999999999999999864221 122222222 2356999999999998643
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-15 Score=150.78 Aligned_cols=114 Identities=18% Similarity=0.066 Sum_probs=80.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+-.+|+++|..|+|||||+++|....-. . + ..|.......+.+. ++.++++|||
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~--~------------~-------~~t~~~~~~~~~~~----~~~~~~~D~~ 69 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA--Q------------H-------QPTQHPTSEELAIG----NIKFTTFDLG 69 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc--c------------c-------CCccccceEEEEEC----CEEEEEEECC
Confidence 34578999999999999999999632110 0 0 01222222344555 7889999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
|+..+...+..+++.+|++|+|+|+++.... .....+..+. ..++|+++++||+|++..
T Consensus 70 G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 133 (184)
T smart00178 70 GHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA 133 (184)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 9999998999999999999999999875321 1222233222 257999999999998643
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=144.87 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=76.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.++|||||+++|... ... ++. .|+......+.+. ...+++|||||+..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~--~~~------------~~~-------pt~g~~~~~~~~~----~~~~~l~D~~G~~~ 56 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG--EIV------------TTI-------PTIGFNVETVEYK----NISFTVWDVGGQDK 56 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCc------------ccC-------CCCCcceEEEEEC----CEEEEEEECCCCHh
Confidence 5899999999999999998521 110 111 1221111223344 78899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCc-hhHHHHHHHHhh----cCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQ-PQTETVWFQSQK----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~-~~t~~~~~~~~~----~~~p~iiviNK~D~~~ 143 (1021)
|...+..+++.+|++|+|+|+++... .+....|..+.. .+.|+++++||+|+..
T Consensus 57 ~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 57 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 99999999999999999999986421 122333333322 3589999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=146.93 Aligned_cols=159 Identities=27% Similarity=0.323 Sum_probs=113.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh---
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY--- 727 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~--- 727 (1021)
.+.++..|.+++|||||+++|++..... .+...+.|.+.....+..++..+.+|||||+.+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI---------------VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee---------------ccCCCCCccCceeeEEEECCeeEEEEECCCCccccch
Confidence 3567899999999999999999753211 1122355665555566777888999999996432
Q ss_pred -------H-HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchh-hHHHHHHHHHHHhhh
Q psy5021 728 -------I-KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDK-ELLDLVEMEIRELLT 798 (1021)
Q Consensus 728 -------~-~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~-~~~~~~~~~~~~~l~ 798 (1021)
. ..+...+..+|++++|+|++++...+....+..+...+.| +++++||+|+.+.. ...+.+.+.+.+.+.
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLP 145 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEeccccCCccHHHHHHHHHHHHhhcc
Confidence 1 2344567899999999999988777777777777777888 88999999987632 234444455554443
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+ ..+++++||+++ .++..+++++.+
T Consensus 146 ~~~----~~~~~~~Sa~~~-----------~~i~~~~~~l~~ 172 (174)
T cd01895 146 FLD----YAPIVFISALTG-----------QGVDKLFDAIDE 172 (174)
T ss_pred ccc----CCceEEEeccCC-----------CCHHHHHHHHHH
Confidence 322 357999999987 378888887754
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-15 Score=148.12 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=104.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
..+.++|.+++|||||+++|..... ........|. +.....+..++ ..+.+|||||+++|..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~--------------~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 67 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTF--------------SERQGNTIGV--DFTMKTLEIEGKRVKLQIWDTAGQERFRT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC--------------cccCCCccce--EEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 5678889999999999999986321 1111122232 33333444444 4678999999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+...++.+|++++|+|+++....+. ..++..+.. .++| +|+|+||+|+.+..+. ..++...+.+..+.
T Consensus 68 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~--- 140 (165)
T cd01864 68 ITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQREV---LFEEACTLAEKNGM--- 140 (165)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcCC---
Confidence 88888999999999999988554333 334444433 2567 8899999998753211 11233344444432
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..++++||++|. |++++++.+.+
T Consensus 141 -~~~~e~Sa~~~~-----------~v~~~~~~l~~ 163 (165)
T cd01864 141 -LAVLETSAKESQ-----------NVEEAFLLMAT 163 (165)
T ss_pred -cEEEEEECCCCC-----------CHHHHHHHHHH
Confidence 468999999873 88899988865
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-15 Score=129.46 Aligned_cols=82 Identities=30% Similarity=0.513 Sum_probs=77.0
Q ss_pred CeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCccc
Q psy5021 852 PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVER 931 (1021)
Q Consensus 852 p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~ 931 (1021)
||||+|+++|+.. |++++|+|++|++++||++.+.|++. .++|+||++++.++++|.|||+|+++|++++..++++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~--~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~ 76 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKT--QVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISP 76 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCc--EEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCC
Confidence 7999999999864 89999999999999999999999764 5899999999999999999999999999999999999
Q ss_pred ceEEee
Q psy5021 932 GQVLAK 937 (1021)
Q Consensus 932 G~vl~~ 937 (1021)
|++||+
T Consensus 77 G~vl~~ 82 (82)
T cd04089 77 GFVLCS 82 (82)
T ss_pred CCEEeC
Confidence 999974
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=146.25 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=79.7
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
...|+++|..++|||||+++|.. +.. .++. .|+......+.+. ...+.+|||||+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~--~~~------------~~~~-------~t~~~~~~~~~~~----~~~l~l~D~~G~ 67 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL--GES------------VTTI-------PTIGFNVETVTYK----NISFTVWDVGGQ 67 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCC------------CCcC-------CccccceEEEEEC----CEEEEEEECCCC
Confidence 46799999999999999999952 111 0110 1222222233444 788999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhh----cCCCEEEEEeCcCCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQK----YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~----~~~p~iiviNK~D~~~~ 144 (1021)
..|...+..+++.+|++|+|+|+++.. .....+.|..+.. .++|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 68 DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 999999999999999999999998642 2223344444322 36899999999998643
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=146.87 Aligned_cols=115 Identities=14% Similarity=0.250 Sum_probs=79.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+++|....-. .++ .+.+..+.....+.+...+....+++|||||+.+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~-------------~~~-----~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 63 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT-------------KDY-----KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE 63 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-------------CCC-----CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH
Confidence 5899999999999999999632110 000 1111121111222332224467899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHh---hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|...+..+++.+|++++|+|+++....+....|.... ..++|+++++||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 64 FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 9999999999999999999998765444444443322 2479999999999984
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=149.01 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=77.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|+.|+|||||++++.+.... +.. ...|.+.. ...+.+. ++....+++|||||+..
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~--------------~~~---~t~~~~~~--~~~~~~~-~~~~~~l~l~Dt~G~~~ 64 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFV--------------NTV---PTKGFNTE--KIKVSLG-NSKGITFHFWDVGGQEK 64 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC--------------CcC---Ccccccee--EEEeecc-CCCceEEEEEECCCcHh
Confidence 4899999999999999999642211 000 00111221 1122221 22367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-----HHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-----ETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-----~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|...+...++.+|++|+|+|+++...... .+++......++|+++++||+|+..
T Consensus 65 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 65 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 99888889999999999999987532222 1222333446799999999999863
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=146.41 Aligned_cols=111 Identities=17% Similarity=0.219 Sum_probs=75.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.|+++|++|+|||||+++|+...-... +.+ |+... ...+.+ ++..+.+.+|||||+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~-------------~~~-------t~~~~~~~~~~~--~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDD-------------YDP-------TIEDSYRKQIEI--DGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-------------cCC-------chhhhEEEEEEE--CCEEEEEEEEECCCcc
Confidence 689999999999999999974321100 000 11100 011112 2335789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HH----HhhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQ----SQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~----~~~~~~p~iiviNK~D~~ 142 (1021)
+|...+...++.+|++++|+|+++........-| .. ....++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 60 EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred cchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999875333222222 22 223478999999999985
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=158.67 Aligned_cols=161 Identities=27% Similarity=0.291 Sum_probs=111.5
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh--
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD-- 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~-- 726 (1021)
.|+..++++|.+|+|||||+|+|++....+..... +.|.+.....+..++..+.|+||||+.+
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~---------------~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP---------------QTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCC---------------CcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 46778899999999999999999986433222111 1222222222334557899999999633
Q ss_pred ------hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 727 ------YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 727 ------~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
+...+..++..+|++++|+|++++......+.+..+...+.| +++|+||+|+........ ..+..+.+..
T Consensus 68 ~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKiDl~~~~~~l~---~~~~~l~~~~ 143 (292)
T PRK00089 68 RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDLVKDKEELL---PLLEELSELM 143 (292)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECCcCCCCHHHHH---HHHHHHHhhC
Confidence 234455667899999999999987666667777777777788 889999999984322222 2333333323
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+ ..+++++||+++ .++++|++.|.+.++
T Consensus 144 ~----~~~i~~iSA~~~-----------~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 144 D----FAEIVPISALKG-----------DNVDELLDVIAKYLP 171 (292)
T ss_pred C----CCeEEEecCCCC-----------CCHHHHHHHHHHhCC
Confidence 3 257899999987 388999999987765
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=145.00 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=81.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|++|+|||||+++|......... ..++.|.......+.+. ++.+++|||||+.+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~----~~~~~i~DtpG~~~ 61 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVS-----------------DIAGTTRDVIEESIDIG----GIPVRLIDTAGIRE 61 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEecc-----------------CCCCCccceEEEEEEeC----CEEEEEEECCCcCC
Confidence 6899999999999999999743221111 12345555444555565 77899999999988
Q ss_pred cHHH--------HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 90 FTIE--------VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~--------~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
+... +...+..+|++++|+|++..........+.. ..+.|+++++||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 62 TEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred CcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 7532 4456788999999999998666666555554 56899999999999863
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=144.91 Aligned_cols=113 Identities=20% Similarity=0.175 Sum_probs=80.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++++...- .. ....|+........+..++....+.+|||||+.+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF--EK------------------KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC------------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCChh
Confidence 689999999999999999973211 00 0112333333333333344468899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh--cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~--~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++|+|+|.+++...+....| +.+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 62 FGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred hccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 988888889999999999999987555444444 33322 279999999999985
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=145.42 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=76.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.++|||||+++|+...-... ...|............++....+++|||||+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~ 62 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSEN--------------------QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC--------------------CCCccceeEEEEEEEECCEEEEEEEEeCCchHH
Confidence 689999999999999999974321110 011222111111222223367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++++|+|+++.-.... ...++.+.. .++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 63 YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99888889999999999999986533222 222233333 358899999999985
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=145.95 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=79.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|++|+|||||+++|+...-... ..+.++.......+.+. +....+++|||||+..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~ 61 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQ------------------YKSTIGVDFKTKTIEVD--GKRVKLQIWDTAGQER 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC------------------CCCceeeEEEEEEEEEC--CEEEEEEEEECCChHH
Confidence 689999999999999999963221100 11122222222233332 3346899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhh---cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~---~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++++|+|+++....+....|. .... .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 62 FRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 9999999999999999999998865554444443 2222 469999999999975
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=144.68 Aligned_cols=109 Identities=17% Similarity=0.073 Sum_probs=76.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+++|.... . ..+ ..|+......+.+. +..+++|||||+.+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~------------~~~-------~~T~~~~~~~~~~~----~~~i~l~Dt~G~~~ 55 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--F------------MQP-------IPTIGFNVETVEYK----NLKFTIWDVGGKHK 55 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--C------------CCc-------CCcCceeEEEEEEC----CEEEEEEECCCChh
Confidence 47899999999999999996321 0 000 11332222334455 78999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
|...+..+++.+|++++|+|+++.-.. .....+.... ..+.|+++|+||+|+..
T Consensus 56 ~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 56 LRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred cchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 999999999999999999999874211 1222233332 13489999999999864
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-15 Score=148.05 Aligned_cols=146 Identities=23% Similarity=0.254 Sum_probs=102.5
Q ss_pred eeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH------H
Q psy5021 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK------N 730 (1021)
Q Consensus 657 ~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~------~ 730 (1021)
+|.+++|||||+++|++... ......|+|++.....+++++..+.+|||||+.+|.. .
T Consensus 2 ~G~~~~GKssl~~~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 65 (158)
T cd01879 2 VGNPNVGKTTLFNALTGARQ----------------KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKV 65 (158)
T ss_pred CCCCCCCHHHHHHHHhcCcc----------------cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHH
Confidence 58899999999999987421 1122357788777777888888999999999987653 2
Q ss_pred HHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 731 MITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 731 ~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
+..++ ..+|++++|+|+.+.. +....+..+...++| +|+++||+|+.+.... . .+...+.+.++ .+
T Consensus 66 ~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~-~---~~~~~~~~~~~-----~~ 133 (158)
T cd01879 66 ARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLELGLP-VVVALNMIDEAEKRGI-K---IDLDKLSELLG-----VP 133 (158)
T ss_pred HHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHcCCC-EEEEEehhhhcccccc-h---hhHHHHHHhhC-----CC
Confidence 33444 3899999999998732 333444556667888 8899999999763221 1 12223333333 46
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++||.++ ++++.+++.|.+.
T Consensus 134 ~~~iSa~~~-----------~~~~~l~~~l~~~ 155 (158)
T cd01879 134 VVPTSARKG-----------EGIDELKDAIAEL 155 (158)
T ss_pred eEEEEccCC-----------CCHHHHHHHHHHH
Confidence 899999987 3788888888653
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=144.94 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee--eEEEeecccCceeEEEEcCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS--VSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~--~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+|+++|++|+|||||+++|+...-.... ..|+.... ..+.+. +....+++|||||+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~--------------------~~t~~~~~~~~~~~~~--~~~~~~~~~D~~g~ 59 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY--------------------KATIGADFLTKEVTVD--DKLVTLQIWDTAGQ 59 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--------------------CCccceEEEEEEEEEC--CEEEEEEEEeCCCh
Confidence 6899999999999999999743211000 01111111 122232 33567889999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-----Hh---hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-----SQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-----~~---~~~~p~iiviNK~D~~ 142 (1021)
.+|.......++.+|++|+++|+.+....+....|.. +. ..++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 60 ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 9999999999999999999999987644333333322 11 1278999999999985
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=144.63 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=80.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
++|+++|++++|||||+++|+...-... ...+.+.+.....+.+. +....+++|||||+.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~l~~~D~~G~~ 60 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ------------------YQATIGIDFLSKTMYLE--DKTVRLQLWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc------------------CCCceeeeEEEEEEEEC--CEEEEEEEEECCCcH
Confidence 3799999999999999999974322111 12233333333333333 334679999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH-hhc--CCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS-QKY--KVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~-~~~--~~p~iiviNK~D~~ 142 (1021)
.|...+...++.+|++++|+|+++....+....| ... ... +.|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 61 RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 9999999999999999999999876544443333 332 223 48999999999984
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=149.92 Aligned_cols=127 Identities=19% Similarity=0.246 Sum_probs=81.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+..+..+|+++|+.|+|||||+++|.... .. .+..+|.|.... .+.+. .+++||
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~---~~---------------~~~~~~~t~~~~--~~~~~------~~~l~D 58 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKK---VR---------------VGKRPGVTRKPN--HYDWG------DFILTD 58 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCC---Cc---------------cCCCCceeeCce--EEeec------ceEEEe
Confidence 34456789999999999999999995321 11 012335555432 22222 589999
Q ss_pred CCCCCC-----------cHHHHHH----HhhccCeEEEEEeCCCC-----------CchhHHHHHHHHhhcCCCEEEEEe
Q psy5021 84 TPGHVD-----------FTIEVER----SLRVLDGAVIIICASSG-----------IQPQTETVWFQSQKYKVPKMIFVN 137 (1021)
Q Consensus 84 tPG~~~-----------f~~~~~~----~l~~~D~~ilvvda~~g-----------~~~~t~~~~~~~~~~~~p~iiviN 137 (1021)
|||+.+ |...+.. ++..+|++++|+|+... ....+.+++..+...++|+++|+|
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~N 138 (201)
T PRK04213 59 LPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVN 138 (201)
T ss_pred CCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 999532 3222222 34457899999999753 223456777777778999999999
Q ss_pred CcCCCCCCHHHHHHHHHHHh
Q psy5021 138 KMDRIGANYNNCIIDIKKKF 157 (1021)
Q Consensus 138 K~D~~~~~~~~~~~~i~~~l 157 (1021)
|+|+...+ .+..+++.+.+
T Consensus 139 K~Dl~~~~-~~~~~~~~~~~ 157 (201)
T PRK04213 139 KMDKIKNR-DEVLDEIAERL 157 (201)
T ss_pred CccccCcH-HHHHHHHHHHh
Confidence 99986443 23334444433
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-14 Score=147.76 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=78.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc-cCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN-KFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~-~~~~~i~liDtPG~~ 88 (1021)
+|+++|..|+|||||+++|+...- .. .+ ..|+......-.+..+ +..+.+.+|||||+.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~--~~-----------~~-------~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~ 61 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF--SQ-----------HY-------KATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CC-----------CC-------CCceeEEEEEEEEEECCCCEEEEEEEECCCch
Confidence 689999999999999999974211 00 00 1133222111111212 446789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hh-------hcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQ-------KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~-------~~~~p~iiviNK~D~~ 142 (1021)
.|...+..+++.+|++|+|+|.++....+....|.. +. ..++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 62 RFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 999999999999999999999987654444333421 11 2578999999999985
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=148.63 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=80.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee--eEEEeecccCceeEEEEcCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS--VSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~--~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.|+++|..++|||||+.++.... ... +...|+.... ..+.+ ++..+.+++|||+|+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f~~------------------~~~~Ti~~~~~~~~i~~--~~~~v~l~iwDtaGq 59 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--FCE------------------ACKSGVGVDFKIKTVEL--RGKKIRLQIWDTAGQ 59 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CCC------------------cCCCcceeEEEEEEEEE--CCEEEEEEEEeCCCc
Confidence 48899999999999999996321 110 0012322221 22333 344688999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHH-h---hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQS-Q---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~-~---~~~~p~iiviNK~D~~ 142 (1021)
..|...+..+++.+|++|+|+|.++....+....|... . ..++|+++|.||+|+.
T Consensus 60 e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 60 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999999999999999999987655555555432 2 2468999999999985
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=145.49 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=79.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|..++|||||+.+|.. +.... + ..|+......+.+. +..+++|||||+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~--~~~~~------------~-------~pt~g~~~~~~~~~----~~~~~i~D~~Gq 71 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKL--GEIVT------------T-------IPTIGFNVETVEYK----NISFTVWDVGGQ 71 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCcc------------c-------cCCcceeEEEEEEC----CEEEEEEECCCC
Confidence 45799999999999999999852 11100 0 01222222234455 789999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
..|...+..+++.+|++|+|+|+++..... ....+.... ..++|+++++||+|++..
T Consensus 72 ~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 999999999999999999999998753221 222233222 147899999999998754
|
|
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=145.69 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=76.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-+|+++|..|+|||||+++|+...-. . .+.+ .-|++... ..+.. ++....+.+|||||+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~--~-----------~~~~---t~~~~~~~--~~~~~--~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT--S-----------AFVS---TVGIDFKV--KTVFR--NDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--C-----------CCCC---ceeeEEEE--EEEEE--CCEEEEEEEEECCChH
Confidence 47999999999999999999632210 0 0000 00111111 11211 2235789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
+|...+...++.+|++++|+|.++....+...-| +.+.. .+.|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 62 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred HHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 9999999999999999999999875333322323 23322 368999999999985
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=144.68 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=100.7
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|.+++|||||+++|++..... .....+.|.+. ..+...+..+.+|||||+++|...+..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~-------------~~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 64 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQS-------------QIIVPTVGFNV----ESFEKGNLSFTAFDMSGQGKYRGLWEH 64 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCc-------------ceecCccccce----EEEEECCEEEEEEECCCCHhhHHHHHH
Confidence 3578899999999999999742111 01112223322 234456788999999999999999999
Q ss_pred HhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 734 GAAQMDGAILVCSAVDGPM-PQTREHILLARQ------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
++..+|++|+|+|+++... ......+..+.. .++| +++|+||+|+.+... .. ++...+.........
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~-~~----~~~~~l~~~~~~~~~ 138 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDALT-AV----KITQLLGLENIKDKP 138 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCCC-HH----HHHHHhCCccccCce
Confidence 9999999999999987543 222333333222 3677 999999999875211 11 222222111111223
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+++++||++| .|+++++++|.+
T Consensus 139 ~~~~~~Sa~~g-----------~gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTG-----------EGLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCC-----------CchHHHHHHHhc
Confidence 56899999988 388999998854
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=145.87 Aligned_cols=155 Identities=21% Similarity=0.147 Sum_probs=105.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.....++|.+++|||||+++|++.... ..+.+.|. ....+..++..+.+|||||+++|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~---------------~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID---------------TISPTLGF----QIKTLEYEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC---------------CcCCcccc----ceEEEEECCEEEEEEECCCCHHHHH
Confidence 4467789999999999999999974210 01122232 2223444578899999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH----HHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLA----RQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~----~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..++..+|++++|+|+++... ....+++..+ ...++| ++|++||+|+.+.. . .+++.+.++......
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~-~----~~~~~~~~~~~~~~~ 147 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDLPGAL-S----EEEIREALELDKISS 147 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcccccCC-C----HHHHHHHhCccccCC
Confidence 88888999999999999987532 2233333322 124667 99999999987522 1 123344443332333
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..++++++||++|. |+++++++|.+
T Consensus 148 ~~~~~~~~Sa~~g~-----------gi~~l~~~l~~ 172 (173)
T cd04154 148 HHWRIQPCSAVTGE-----------GLLQGIDWLVD 172 (173)
T ss_pred CceEEEeccCCCCc-----------CHHHHHHHHhc
Confidence 45789999999883 88999988753
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=145.02 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=101.2
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|.+++|||||+++++.... ........+.++......+......+.+|||||+++|...+..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 68 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGY--------------EPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHAS 68 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC--------------CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHH
Confidence 56789999999999999987431 1111112233332222333333456789999999999999999
Q ss_pred HhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQT-REHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
+++.+|++|+|+|++++...+. .+++..+... ++| +++++||+|+... . ..+..++.+.. +++++
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~-~-----~~~~~~~~~~~-----~~~~~ 136 (161)
T cd04124 69 YYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDLDPS-V-----TQKKFNFAEKH-----NLPLY 136 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccCchh-H-----HHHHHHHHHHc-----CCeEE
Confidence 9999999999999987654333 3444455444 677 8999999998531 1 11222233322 25789
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++||++|. |++++++.+.+.
T Consensus 137 ~~Sa~~~~-----------gv~~l~~~l~~~ 156 (161)
T cd04124 137 YVSAADGT-----------NVVKLFQDAIKL 156 (161)
T ss_pred EEeCCCCC-----------CHHHHHHHHHHH
Confidence 99999873 888888888654
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=145.27 Aligned_cols=116 Identities=19% Similarity=0.194 Sum_probs=80.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
..-+|+++|++|+|||||+++++...-.... + ...|.+..... +.+ ++....+++|||||
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~-----------~-----~t~~~~~~~~~--~~~--~~~~~~~~i~Dt~G 62 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------D-----LTIGVEFGARM--ITI--DGKQIKLQIWDTAG 62 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------C-----CccceeEEEEE--EEE--CCEEEEEEEEECCC
Confidence 3568999999999999999999642211110 0 01122222222 222 23356899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhh---cCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~---~~~p~iiviNK~D~~ 142 (1021)
+..|......+++.+|++|+|+|+++....+....|. .+.. .++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 63 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999998999999999999999999755444444443 2222 478999999999985
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=144.78 Aligned_cols=115 Identities=20% Similarity=0.167 Sum_probs=79.4
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+.+|+++|+.++|||||+++|.... ... ++ ..|+...........++..+.+.+|||||+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~--~~~-----------~~-------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 61 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKK--FMA-----------DC-------PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ 61 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CCC-----------CC-------CcccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 3689999999999999999996321 111 00 012211111111222334678999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHh---hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~---~~~~p~iiviNK~D~~ 142 (1021)
..|...+...++.+|++|+|+|.++....+....|. ... ..+.|++++.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 62 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999999999999999999999865444444443 222 3468899999999985
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=148.49 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=77.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee-eEEEeecccCceeEEEEcCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS-VSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~i~liDtPG 86 (1021)
.-+|+++|+.|+|||||+++++...-. . .+. .|+.... ..+.. ++..+.+++|||||
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~-----------~~~-------~t~~~~~~~~~~~--~~~~~~l~i~Dt~G 62 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--D-----------EYD-------PTIEDSYRKQCVI--DEETCLLDILDTAG 62 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--c-----------CcC-------CchhhEEEEEEEE--CCEEEEEEEEeCCC
Confidence 458999999999999999999742210 0 000 0111111 11111 23367899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HH----hhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~----~~~~~p~iiviNK~D~~ 142 (1021)
+.+|...+..+++.+|++|+|+|+++.........|. .. ...++|+++++||+|+.
T Consensus 63 ~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 63 QEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred CccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999999764433333332 22 23478999999999985
|
|
| >cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=127.66 Aligned_cols=83 Identities=39% Similarity=0.711 Sum_probs=78.4
Q ss_pred eeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccc
Q psy5021 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERG 932 (1021)
Q Consensus 853 ~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 932 (1021)
|||+|+++|+++|.|++++|+|++|++++||++.+.|.+. .++|+||+.++.++++|.|||+|++.|++++..++++|
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~--~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G 78 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGE--ETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERG 78 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCc--eEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCc
Confidence 6899999999999999999999999999999999999653 58999999999999999999999999999988999999
Q ss_pred eEEee
Q psy5021 933 QVLAK 937 (1021)
Q Consensus 933 ~vl~~ 937 (1021)
+++|+
T Consensus 79 ~vl~~ 83 (83)
T cd03696 79 DVLSS 83 (83)
T ss_pred cEEcC
Confidence 99974
|
SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=145.57 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=98.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe-EEEEEecCChhh-----
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK-HYAHVDCPGHAD----- 726 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~-~i~liDtpG~~~----- 726 (1021)
.++++|.+++|||||+++|++....... ..+.|.+.....+...+. .+.||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~----------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD----------------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC----------------CCccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 3688999999999999999974321111 113344444444555565 899999999732
Q ss_pred --hHHHHHHHhhhCCEEEEEEECCCC-Cc-HHHHHHHHHHHHc-----CCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 727 --YIKNMITGAAQMDGAILVCSAVDG-PM-PQTREHILLARQV-----GVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 727 --~~~~~~~~~~~aD~ailVvDa~~g-~~-~qt~e~l~~~~~~-----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
+...+...+..+|++++|+|+++. .. .+...+...+... +.| +++|+||+|+.+.... . ..+..+.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~-~---~~~~~~~ 140 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDLLDEEEL-F---ELLKELL 140 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc-cEEEEEchhcCCchhh-H---HHHHHHH
Confidence 334445556779999999999986 22 2223333334332 566 8889999998763222 1 2223333
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
... ...+++++||+++ .+++.++++|.+.
T Consensus 141 ~~~----~~~~~~~~Sa~~~-----------~gi~~l~~~i~~~ 169 (170)
T cd01898 141 KEL----WGKPVFPISALTG-----------EGLDELLRKLAEL 169 (170)
T ss_pred hhC----CCCCEEEEecCCC-----------CCHHHHHHHHHhh
Confidence 221 1356899999987 3888999888653
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=143.97 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=78.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+.+|+++|..|+|||||+++++...-... ....++.......+.+. +....+++|||||+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~------------------~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~ 61 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTES------------------YISTIGVDFKIRTIELD--GKTIKLQIWDTAGQ 61 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC------------------CCCccceeEEEEEEEEC--CEEEEEEEEECCCc
Confidence 46899999999999999999963211100 01111222111222222 33578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
.+|...+...++.+|++|+|+|+++.........| ..... .++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 62 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 99999999999999999999999875333322223 22222 468999999999975
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=128.49 Aligned_cols=83 Identities=30% Similarity=0.547 Sum_probs=76.6
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc---eeeEeceEEEeecCCeeccccccCCCEEEEecCCcccc
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK---VKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESST 374 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~ 374 (1021)
|.++|||+.+|++.|+++|+|||+|+|++||.|++...+ ..+++.+++.++|.+..+++++.||||+++.|++++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 478999999999999999999999999999999976653 35789999999999999999999999999999999999
Q ss_pred CCeecc
Q psy5021 375 GDTLCS 380 (1021)
Q Consensus 375 gdtl~~ 380 (1021)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred cceecC
Confidence 999963
|
BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.5e-14 Score=140.63 Aligned_cols=111 Identities=16% Similarity=0.228 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+|+++|.+|+|||||+++|+...-. . .+.+ |+... ...+.+. +..+.+++|||||+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~--~-----------~~~~-------t~~~~~~~~~~~~--~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFV--D-----------EYDP-------TIEDSYRKQVVID--GETCLLDILDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--C-----------CcCC-------cchheEEEEEEEC--CEEEEEEEEECCCCc
Confidence 6899999999999999999742211 0 0000 11110 1112222 235678999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHH----hhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~----~~~~~p~iiviNK~D~~ 142 (1021)
+|...+..+++.+|++++|+|.++....+... .+... ...++|+++++||+|+.
T Consensus 61 ~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 61 EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999999999999998743323222 22222 23578999999999985
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-14 Score=144.58 Aligned_cols=148 Identities=22% Similarity=0.239 Sum_probs=104.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh----
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH---- 724 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~---- 724 (1021)
.+...++++|.+++|||||+|+|++... ........|.|.+.....+ + ..+.||||||+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~--------------~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~ 78 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKK--------------LARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAK 78 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC--------------cccccCCCCcceEEEEEEe--C-CcEEEEeCCCCcccc
Confidence 4557889999999999999999997420 0011123355665544333 2 36899999995
Q ss_pred ------hhhHHHHHHHhh---hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 725 ------ADYIKNMITGAA---QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 725 ------~~~~~~~~~~~~---~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
.+|...+..+++ .+|++++|+|++.+...++.+++.++...++| +++++||+|+... ...+...+++++
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~-~~~~~~~~~i~~ 156 (179)
T TIGR03598 79 VSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIP-VLIVLTKADKLKK-SELNKQLKKIKK 156 (179)
T ss_pred CChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCCH-HHHHHHHHHHHH
Confidence 334444444443 46899999999998888888888888888999 8899999999753 233445566666
Q ss_pred hhhccccCCCceEEEEecccccc
Q psy5021 796 LLTEYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~ 818 (1021)
.++..+. +.+++++||++|.
T Consensus 157 ~l~~~~~---~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 157 ALKKDAD---DPSVQLFSSLKKT 176 (179)
T ss_pred HHhhccC---CCceEEEECCCCC
Confidence 6665432 3579999999874
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-14 Score=141.97 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=78.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.|+|||||+++|+........ +...+.+.... .+.+. +....+.+|||||+..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~--~~~~~--~~~~~~~l~D~~g~~~ 61 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDL----------------AATIGVDFKVK--TLTVD--GKKVKLAIWDTAGQER 61 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccc----------------CCcccceEEEE--EEEEC--CEEEEEEEEECCCchh
Confidence 6899999999999999999742211100 01112222222 22222 2357899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-----HHhhcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-----QSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-----~~~~~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++++|+|+++....+....|. .....++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 62 FRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 9988888999999999999998765444433342 2234578999999999985
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.5e-14 Score=140.61 Aligned_cols=114 Identities=20% Similarity=0.158 Sum_probs=79.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-+.|+++|++|+|||||+++|+...-.... . ....+.......+... +..+.+|||||+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~----~~~~~liDtpG~ 61 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS-----P------------KPQTTRNRIRGIYTDD----DAQIIFVDTPGI 61 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEecc-----C------------CCCceeceEEEEEEcC----CeEEEEEECCCC
Confidence 467999999999999999999743211110 0 0011111111112222 578999999998
Q ss_pred CCcHH--------HHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTI--------EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~--------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+... .....+..+|++++|+|+++........+++.+...+.|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 62 HKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred CcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 65432 34556889999999999998866666677777777789999999999985
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-14 Score=141.05 Aligned_cols=110 Identities=21% Similarity=0.169 Sum_probs=77.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCc
Q psy5021 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDF 90 (1021)
Q Consensus 11 i~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f 90 (1021)
|+++|+.|+|||||+++|....-. .++. .|+......+.+. ...+.+|||||+..|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-------------~~~~-------~t~~~~~~~~~~~----~~~~~~~D~~g~~~~ 57 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-------------EDTI-------PTVGFNMRKVTKG----NVTLKVWDLGGQPRF 57 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-------------cCcc-------CCCCcceEEEEEC----CEEEEEEECCCCHhH
Confidence 789999999999999999532110 1111 1222222233444 578999999999999
Q ss_pred HHHHHHHhhccCeEEEEEeCCCCCc-hhHHHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 91 TIEVERSLRVLDGAVIIICASSGIQ-PQTETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 91 ~~~~~~~l~~~D~~ilvvda~~g~~-~~t~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
...+..+++.+|++++|+|+++... .+....|..+. ..++|+++++||+|+...
T Consensus 58 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 58 RSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 9999999999999999999986432 22233344332 257899999999998643
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-14 Score=142.69 Aligned_cols=112 Identities=20% Similarity=0.156 Sum_probs=75.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.+|+++|.+|+|||||++++....- .. ++.+ |+... ...+.. ++....+.+|||||+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~-----------~~~~-------t~~~~~~~~~~~--~~~~~~l~i~Dt~G~ 59 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VE-----------KYDP-------TIEDSYRKQIEV--DGQQCMLEILDTAGT 59 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--Cc-----------ccCC-------chhhhEEEEEEE--CCEEEEEEEEECCCc
Confidence 4799999999999999999973221 10 0000 11100 011112 233577889999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHH-HHHHh----hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETV-WFQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~-~~~~~----~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++++|+|.++......... +..+. ..++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 60 EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999987533322222 23332 2468999999999985
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-14 Score=141.68 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=78.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCc
Q psy5021 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDF 90 (1021)
Q Consensus 11 i~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f 90 (1021)
|+++|..|+|||||+++|...... .++ ..|+......+.+. +..+.+|||||+.+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-------------~~~-------~pt~g~~~~~i~~~----~~~l~i~Dt~G~~~~ 57 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-------------ESV-------VPTTGFNSVAIPTQ----DAIMELLEIGGSQNL 57 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-------------ccc-------cccCCcceEEEeeC----CeEEEEEECCCCcch
Confidence 789999999999999999632110 000 01222222334444 789999999999999
Q ss_pred HHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHHh--hcCCCEEEEEeCcCCCCC
Q psy5021 91 TIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQSQ--KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 91 ~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~~--~~~~p~iiviNK~D~~~~ 144 (1021)
...+..+++.+|++|+|+|+++..... .+..+..+. ..++|+++|+||+|+...
T Consensus 58 ~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 58 RKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 999999999999999999998754222 222233332 257999999999998654
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=143.70 Aligned_cols=116 Identities=20% Similarity=0.166 Sum_probs=79.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+++|.+|+|||||++++....- .. . ....++.......+.+. +..+.+.+|||||
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f--~~------~----------~~~t~~~~~~~~~~~~~--~~~~~l~l~D~~g 61 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSF--NP------S----------FISTIGIDFKIRTIELD--GKKIKLQIWDTAG 61 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcC--Cc------c----------cccCccceEEEEEEEEC--CEEEEEEEEeCCc
Confidence 467899999999999999999964211 00 0 00111111111222333 3357899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hh---hcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~---~~~~p~iiviNK~D~~ 142 (1021)
+.+|.......++.+|++|+|+|++++...+...-|.. .. ..+.|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 62 QERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred hHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999989899999999999999987654433333332 22 2468999999999986
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-14 Score=143.51 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=76.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|++++|||||+++|+...-.. +....++.+.....+.+ ++....+++|||||+.+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~ 61 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS------------------KYLPTIGIDYGVKKVSV--RNKEVRVNFFDLSGHPE 61 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC------------------CCCCccceeEEEEEEEE--CCeEEEEEEEECCccHH
Confidence 68999999999999999997422110 00111111111112222 23368899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHh----h----cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQ----K----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~----~----~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++|+|+|.++....+....|. .+. . .+.|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 62 YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 9988888999999999999998764433333332 221 1 468999999999985
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-14 Score=142.34 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=74.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCc
Q psy5021 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDF 90 (1021)
Q Consensus 11 i~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f 90 (1021)
|+++|..|+|||||+++|....-. . .. ...|.++ ..+.+. ..+.+++|||||+..|
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~--~------------~~---~t~~~~~----~~~~~~---~~~~l~i~D~~G~~~~ 57 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELV--T------------TI---PTVGFNV----EMLQLE---KHLSLTVWDVGGQEKM 57 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcc--c------------cc---CccCcce----EEEEeC---CceEEEEEECCCCHhH
Confidence 789999999999999999632210 0 00 0111121 112222 2578999999999999
Q ss_pred HHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHH----hhcCCCEEEEEeCcCCCC
Q psy5021 91 TIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQS----QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 91 ~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~----~~~~~p~iiviNK~D~~~ 143 (1021)
...+...++.+|++|+|+|+++..... ....+... ...++|+++|+||+|+..
T Consensus 58 ~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 58 RTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 988888999999999999998753211 12222222 125799999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.3e-14 Score=146.82 Aligned_cols=117 Identities=13% Similarity=0.074 Sum_probs=75.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+.+.+|+|+|++|+|||||+++|+....... ...+.|+......+.+.. .+.+.+||||
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~------------------~~~~~t~~~~~~~~~~~~---~~~~~i~Dt~ 97 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE------------------DQLFATLDPTTRRLRLPD---GREVLLTDTV 97 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccC------------------CccceeccceeEEEEecC---CceEEEeCCC
Confidence 3467999999999999999999974321100 011224443334444441 3489999999
Q ss_pred CCCCc-HH-------HHHHHhhccCeEEEEEeCCCCCchhHHHHH----HHHhhcCCCEEEEEeCcCCCC
Q psy5021 86 GHVDF-TI-------EVERSLRVLDGAVIIICASSGIQPQTETVW----FQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f-~~-------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~----~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|+.+. .. .....+..+|++++|+|++++........| +.+...++|+++|+||+|+..
T Consensus 98 G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 98 GFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred ccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 98442 11 122335689999999999987544433222 333334689999999999854
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-14 Score=144.30 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=77.6
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
...|+++|..++|||||+.++.. +... ++. .|+......+.+. ++.+++|||||+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~--~~~~------------~~~-------~T~~~~~~~~~~~----~~~~~l~D~~G~ 71 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKL--GEVV------------TTI-------PTIGFNVETVEYK----NLKFTMWDVGGQ 71 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCcc------------ccC-------CccccceEEEEEC----CEEEEEEECCCC
Confidence 35799999999999999999852 1110 000 1222222233444 789999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCc-hhHHHHHHHHh-h---cCCCEEEEEeCcCCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQ-PQTETVWFQSQ-K---YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~-~~t~~~~~~~~-~---~~~p~iiviNK~D~~~~ 144 (1021)
..|...+..+++.+|++|+|+|+++.-. ......|.... . .+.|+++|+||.|++..
T Consensus 72 ~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 72 DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 9999999999999999999999986321 11222333222 1 36899999999998653
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-14 Score=142.61 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=76.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++++. +.... ++ ..|+.... ...+..++..+.+++|||||+..
T Consensus 3 ki~~~G~~~~GKTsli~~~~~--~~~~~-----------~~-------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 61 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ--GIFVE-----------KY-------DPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQ 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCc-----------cc-------CCcchheE-EEEEEECCEEEEEEEEECCCccc
Confidence 689999999999999999973 21111 00 01221111 11122233467889999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHH----hhcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~----~~~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++++|+|.++....+.. ..+... ...++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 62 FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 999999999999999999998865433322 222322 23579999999999985
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-14 Score=142.64 Aligned_cols=115 Identities=18% Similarity=0.149 Sum_probs=78.4
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|.+++|||||+++|+...-... ..+.++.......+.+. +....+.+|||||+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~--~~~~~~~l~D~~g~ 62 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD------------------SKSTIGVEFATRSIQID--GKTIKAQIWDTAGQ 62 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC------------------CCCccceEEEEEEEEEC--CEEEEEEEEeCCCh
Confidence 46899999999999999999963221100 01112222222223332 33467999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
..|.......++.+|++|+|+|+++....+...-| ..+. ..++|+++++||.|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 63 ERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99998889999999999999999865443333333 2222 2368999999999975
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-14 Score=142.30 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=76.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..|+|||||+++++... ... .+.... + ..........+. ...+++|||||+.+
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~--f~~--------~~~~t~------~-~~~~~~~~~~~~----~~~l~i~Dt~G~~~ 61 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGT--FRE--------SYIPTI------E-DTYRQVISCSKN----ICTLQITDTTGSHQ 61 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC--------CcCCcc------h-heEEEEEEECCE----EEEEEEEECCCCCc
Confidence 58999999999999999997321 110 000000 0 000111122222 67899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh------cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK------YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~------~~~p~iiviNK~D~~ 142 (1021)
|......+++.+|++|+|+|.++...... ...|..+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 62 FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 99888889999999999999987654433 333333332 468999999999985
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=156.80 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=83.0
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
+.-+-.|+|+|.+|||||||+++|......+. + ..+.|+.+....+.+.. ...+.++||
T Consensus 155 lk~~adVglVG~PNaGKSTLln~ls~a~~~va------------~------ypfTT~~p~~G~v~~~~---~~~~~i~D~ 213 (335)
T PRK12299 155 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIA------------D------YPFTTLHPNLGVVRVDD---YKSFVIADI 213 (335)
T ss_pred EcccCCEEEEcCCCCCHHHHHHHHHcCCCccC------------C------CCCceeCceEEEEEeCC---CcEEEEEeC
Confidence 34567899999999999999999964322111 1 12346777666666641 567999999
Q ss_pred CCCCC-------cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVD-------FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~-------f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
||..+ +.....+.+..+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 214 PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 214 PGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred CCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 99853 445667778889999999999864333333344 33332 3689999999999864
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-14 Score=140.46 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.|+|||||+++|....- .. ... .+ .+ ..++ ....++..+.+++|||||+.+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~--~~--~~~--~~-~~--------~~~~-------~~~~~~~~~~~~i~Dt~G~~~ 59 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF--PE--NVP--RV-LP--------EITI-------PADVTPERVPTTIVDTSSRPQ 59 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--Cc--cCC--Cc-cc--------ceEe-------eeeecCCeEEEEEEeCCCchh
Confidence 689999999999999999974221 00 000 00 00 1111 111123468899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHH-HHh--hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWF-QSQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~-~~~--~~~~p~iiviNK~D~~~ 143 (1021)
+...+...++.+|++++|+|+++....+.. ..|. .+. ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 60 DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred hhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 888888889999999999999886555442 2342 232 24789999999999864
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-14 Score=148.60 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=82.9
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+...+|+++|+.++|||||+++|+...-.. + . ..|+...........++....++|||
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-------------~-----~--~~t~g~~~~~~~v~~~~~~~~l~l~D 67 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL-------------E-----S--KSTIGVEFATRTLQVEGKTVKAQIWD 67 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCC-------------C-----C--CCceeEEEEEEEEEECCEEEEEEEEE
Confidence 34567899999999999999999996321110 0 0 11222222211222233457899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|||+..|......+++.+|++|+|+|.++....+....| ..+. ..++|+++++||+|+.
T Consensus 68 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 999999999999999999999999999876444444334 3333 2479999999999974
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-14 Score=138.96 Aligned_cols=132 Identities=14% Similarity=0.187 Sum_probs=97.7
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
|.+...-||++|.+|+|||||+|+|..+... .+.+ ..+|.|...+. |.+. ..+.|+|
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L-ArtS---------------ktPGrTq~iNf--f~~~-----~~~~lVD 76 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNL-ARTS---------------KTPGRTQLINF--FEVD-----DELRLVD 76 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcce-eecC---------------CCCCccceeEE--EEec-----CcEEEEe
Confidence 5667789999999999999999999864432 1111 23456666553 3343 2388999
Q ss_pred CCCC----------CCcHHHHHHHh---hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-CHHHH
Q psy5021 84 TPGH----------VDFTIEVERSL---RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA-NYNNC 149 (1021)
Q Consensus 84 tPG~----------~~f~~~~~~~l---~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~ 149 (1021)
.||+ ..+...+..++ ....+++++||+.+++...++++++++...++|+++++||+|+... +..+.
T Consensus 77 lPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~ 156 (200)
T COG0218 77 LPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQ 156 (200)
T ss_pred CCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHH
Confidence 9997 22333444455 3478999999999999999999999999999999999999999763 35555
Q ss_pred HHHHHHHhC
Q psy5021 150 IIDIKKKFN 158 (1021)
Q Consensus 150 ~~~i~~~l~ 158 (1021)
+..+++.+.
T Consensus 157 l~~v~~~l~ 165 (200)
T COG0218 157 LNKVAEELK 165 (200)
T ss_pred HHHHHHHhc
Confidence 666665554
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=163.74 Aligned_cols=125 Identities=27% Similarity=0.426 Sum_probs=114.8
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
...++.|+|||||||.+.|+..++.+.....-..+++|....|..||+|...+.+++..++..++|||+|||-||....-
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs 90 (887)
T KOG0467|consen 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS 90 (887)
T ss_pred EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhh
Confidence 34578899999999999999877777666666667899999999999999999999888899999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecc
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKAD 778 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D 778 (1021)
++.+-+|+++++||+.+|+..||...+..+-..|.. .|+|+||||
T Consensus 91 sas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~-~~lvinkid 135 (887)
T KOG0467|consen 91 SASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLK-PILVINKID 135 (887)
T ss_pred hhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCc-eEEEEehhh
Confidence 999999999999999999999999999999999998 788999999
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=142.79 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=80.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|+.|+|||||+++++... .. .+....+........+.+ ++..+.+++|||||
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~--~~----------------~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G 60 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGR--FP----------------ERTEATIGVDFRERTVEI--DGERIKVQLWDTAG 60 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC--CC----------------CccccceeEEEEEEEEEE--CCeEEEEEEEeCCC
Confidence 35799999999999999999996311 00 001111222222222223 23457899999999
Q ss_pred CCCcHH-HHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhh----cCCCEEEEEeCcCCC
Q psy5021 87 HVDFTI-EVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~-~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~----~~~p~iiviNK~D~~ 142 (1021)
+.+|.. .....++.+|++++|+|+++....+....|. .+.. .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 61 QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred hHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 999874 4677789999999999999876666665664 3332 468999999999985
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.5e-14 Score=141.82 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++|+........ . .|+........+...+....+++|||||+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~------------------~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 61 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH------------------E--STTQASFFQKTVNIGGKRIDLAIWDTAGQER 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc------------------C--CccceeEEEEEEEECCEEEEEEEEECCchHH
Confidence 7999999999999999999743221100 0 0111111111111123356799999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH----HHhhcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF----QSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~----~~~~~~~p~iiviNK~D~~ 142 (1021)
|...+...++.+|++++|+|.+++...+....|. .....++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 62 YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred HHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 9888888899999999999998865444443332 2223368999999999985
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-14 Score=142.46 Aligned_cols=152 Identities=15% Similarity=0.148 Sum_probs=100.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee----CCeEEEEEecCChhhhH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES----ENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~----~~~~i~liDtpG~~~~~ 728 (1021)
.+.++|.+++|||||+++|++.... .+....++.+.....+.. ....+.+|||||+++|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT----------------KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH
Confidence 3567899999999999999974311 011122223332222322 24578899999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHH-HHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREH-ILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~-l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
..+..+++.+|++++|+|+++....+.... +..+.. .++| +|+|+||+|+....... .++...+.+.++
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~v~---~~~~~~~~~~~~---- 137 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAVIT---NEEAEALAKRLQ---- 137 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccccCCC---HHHHHHHHHHcC----
Confidence 988889999999999999987543333222 222222 2678 89999999987522211 123344444444
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++++||+++. +++++++.|.+
T Consensus 138 -~~~~~~Sa~~~~-----------~v~~l~~~l~~ 160 (162)
T cd04106 138 -LPLFRTSVKDDF-----------NVTELFEYLAE 160 (162)
T ss_pred -CeEEEEECCCCC-----------CHHHHHHHHHH
Confidence 478999999873 88889988864
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-14 Score=142.67 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=106.6
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+...+.|.+++|||||+++|++..... ...+..|.+.......+......+.+||+||+++|...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE--------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 346778899999999999999754111 122333444444444444444677899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGP-MPQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...++.+|++++|+|+++.. +.+...++..+... ++| +++++||+|+.+.... ..++...+....+ +
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~ 138 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQV---STEEAQEYADENG-----L 138 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcC---CHHHHHHHHHHcC-----C
Confidence 88889999999999998643 23444455544444 356 8999999998742110 1122333444333 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++++||++|. |+.++++.|.+.+
T Consensus 139 ~~~~~Sa~~~~-----------~v~~l~~~l~~~l 162 (163)
T cd01860 139 LFFETSAKTGE-----------NVNELFTEIAKKL 162 (163)
T ss_pred EEEEEECCCCC-----------CHHHHHHHHHHHh
Confidence 78999999873 8899999887654
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-14 Score=147.00 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=76.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceee-eeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITIT-SASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~-~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+|+++|+.|+|||||+++|+...-. . .+ ..|+. .....+.+. +....++||||||+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~-----------~~-------~~t~~~~~~~~~~~~--~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--P-----------KY-------RRTVEEMHRKEYEVG--GVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--c-----------cC-------CCchhhheeEEEEEC--CEEEEEEEEECCCch
Confidence 4799999999999999999742210 0 00 00111 111222333 234789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-----HHHhhcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-----FQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-----~~~~~~~~p~iiviNK~D~~~ 143 (1021)
+|......+++.+|++|+|+|+++....+....| +.....++|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 59 SFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 9998888899999999999999875433322222 222235799999999999853
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=126.67 Aligned_cols=82 Identities=22% Similarity=0.466 Sum_probs=74.2
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe-c---CCccc
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV-G---LKESS 373 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~ 373 (1021)
|.++|||+.+|++.|+++|+|||+|+|++||.|++...++++++.+++. ++.+..+++++.||||+++. | ++++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~-~~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGI-FRPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEE-ECCCccCCceECCCCEEEEEccccccCccc
Confidence 5799999999999999999999999999999999988777899999995 47778999999999999995 3 67789
Q ss_pred cCCeecc
Q psy5021 374 TGDTLCS 380 (1021)
Q Consensus 374 ~gdtl~~ 380 (1021)
+|||||.
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999974
|
The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.1e-14 Score=140.92 Aligned_cols=111 Identities=20% Similarity=0.181 Sum_probs=80.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+++|... ... ....|+......+.+. ++.++++||||+..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~------------------~~~~t~g~~~~~~~~~----~~~~~i~D~~G~~~ 55 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPK------------------KVAPTVGFTPTKLRLD----KYEVCIFDLGGGAN 55 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCc------------------cccCcccceEEEEEEC----CEEEEEEECCCcHH
Confidence 4899999999999999998531 100 0112333333345555 78999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHHhh----cCCCEEEEEeCcCCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQSQK----YKVPKMIFVNKMDRIGAN 145 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~~~----~~~p~iiviNK~D~~~~~ 145 (1021)
|...+..+++.+|++|+|+|+++.-..+ ....+..+.. .++|+++|+||+|++.+.
T Consensus 56 ~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 56 FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 9999999999999999999998753222 2333343322 478999999999997654
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-14 Score=145.91 Aligned_cols=155 Identities=23% Similarity=0.286 Sum_probs=102.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC-------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG------- 723 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG------- 723 (1021)
...++++|.+++|||||+|+|++... ..+...|+|.+..... .. .+.+|||||
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~ 68 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPNHYD--WG--DFILTDLPGFGFMSGV 68 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCceEEe--ec--ceEEEeCCcccccccc
Confidence 46789999999999999999987431 1223346676654433 22 589999999
Q ss_pred ----hhhhHHHHHHHh----hhCCEEEEEEECCCC-----------CcHHHHHHHHHHHHcCCCeEEEEEeeccccchhh
Q psy5021 724 ----HADYIKNMITGA----AQMDGAILVCSAVDG-----------PMPQTREHILLARQVGVPNIVVFLNKADCVQDKE 784 (1021)
Q Consensus 724 ----~~~~~~~~~~~~----~~aD~ailVvDa~~g-----------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~ 784 (1021)
.++|...+..++ ..+|++++|+|++.. ...++.+++..+...++| +++|+||+|+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~- 146 (201)
T PRK04213 69 PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP-PIVAVNKMDKIKNR- 146 (201)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC-eEEEEECccccCcH-
Confidence 455655444443 456899999998642 223456667777778899 88999999997532
Q ss_pred HHHHHHHHHHHhhhccccC----CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 785 LLDLVEMEIRELLTEYDFD----GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 785 ~~~~~~~~~~~~l~~~~~~----~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
....+++.+ .++.. ....+++++||++| |+++++++|.+.++.
T Consensus 147 --~~~~~~~~~---~~~~~~~~~~~~~~~~~~SA~~g------------gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 147 --DEVLDEIAE---RLGLYPPWRQWQDIIAPISAKKG------------GIEELKEAIRKRLHE 193 (201)
T ss_pred --HHHHHHHHH---HhcCCccccccCCcEEEEecccC------------CHHHHHHHHHHhhcC
Confidence 111222322 22321 11136899999965 678899998876643
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-14 Score=165.38 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=84.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|++|+|||||+++|+.....+.. ...|.|.+.....+.+. ++.+++|||||+.
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-----------------~~~gtT~d~~~~~i~~~----g~~i~l~DT~G~~ 274 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVT-----------------DIAGTTRDVIEEHINLD----GIPLRLIDTAGIR 274 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccC-----------------CCCCcccccEEEEEEEC----CeEEEEEeCCCCC
Confidence 47999999999999999999753322211 12345555555556666 7889999999998
Q ss_pred CcHHH--------HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIE--------VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~--------~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
++... +...++.+|++++|+|++++...+....|.. ..++|+++|+||+|+.
T Consensus 275 ~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 275 ETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred CCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 76532 3446788999999999998877766667765 5578999999999985
|
|
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-14 Score=145.62 Aligned_cols=118 Identities=20% Similarity=0.211 Sum_probs=84.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..++-+||++|.+|+|||||+|.|+...-.... + .-..|.......+.-. .+++.|.||
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS--------~---------K~~TTr~~ilgi~ts~----eTQlvf~DT 127 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS--------R---------KVHTTRHRILGIITSG----ETQLVFYDT 127 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcccccc--------c---------cccceeeeeeEEEecC----ceEEEEecC
Confidence 467889999999999999999999865433222 1 1112444444444444 789999999
Q ss_pred CCCC------------CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHh-hcCCCEEEEEeCcCCCC
Q psy5021 85 PGHV------------DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ-KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~------------~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~-~~~~p~iiviNK~D~~~ 143 (1021)
||.+ .|......|+..||.+++|+|+++.-....-.+++.+. -.++|-++|+||+|...
T Consensus 128 PGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 128 PGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred CcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch
Confidence 9952 34456788999999999999999643333344555553 35799999999999863
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-14 Score=142.71 Aligned_cols=112 Identities=20% Similarity=0.196 Sum_probs=78.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee-eEEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS-VSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-+|+++|..|+|||||+.+++...- .. .+ ..|+.... ..+.+ ++..+.+++|||||.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f--~~-----------~~-------~~t~~~~~~~~~~~--~~~~~~l~i~Dt~G~ 60 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF--PD-----------YH-------DPTIEDAYKQQARI--DNEPALLDILDTAGQ 60 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CC-----------Cc-------CCcccceEEEEEEE--CCEEEEEEEEeCCCc
Confidence 3689999999999999999974211 10 00 01221111 11222 234578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HH----hhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~----~~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++|+|+|.++....+...-|. .+ ...++|+++|+||+|+.
T Consensus 61 ~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 999999999999999999999999876655544332 22 23479999999999985
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.5e-14 Score=139.80 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=75.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|.+|+|||||+++|+...-.-.. ..+..+. . ......++..+.+.+|||||+.+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~------~~~~~~~----------~-----~~~~~~~~~~~~~~i~D~~g~~~ 60 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDY------EPTKADS----------Y-----RKKVVLDGEDVQLNILDTAGQED 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcccc------CCcchhh----------E-----EEEEEECCEEEEEEEEECCChhh
Confidence 7999999999999999999743211000 0000010 0 00111122367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHH----hhcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQS----QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~----~~~~~p~iiviNK~D~~~ 143 (1021)
|......+++.+|++++|+|..+.-... ....+... ...++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 61 YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 9999999999999999999987643211 12222222 235899999999999853
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-14 Score=141.38 Aligned_cols=115 Identities=23% Similarity=0.277 Sum_probs=77.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|++|+|||||+++|+... .. .+..++++.......+.+. +..+.+.+|||||+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FI-----------------TEYKPGTTRNYVTTVIEED--GKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-Cc-----------------CcCCCCceeeeeEEEEEEC--CEEEEEEEEECCCcc
Confidence 589999999999999999997432 11 1122344554444334444 223789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
+|........+.++.++.++|.... .......+++.+.. +.|+++++||+|+...
T Consensus 62 ~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 62 DYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA 123 (161)
T ss_pred cchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc
Confidence 9977776666667666666666543 33344444444433 8999999999998643
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-14 Score=157.08 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=108.2
Q ss_pred cccc-ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCChh
Q psy5021 648 DLRS-NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGHA 725 (1021)
Q Consensus 648 ~l~~-~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~~ 725 (1021)
+|+. ..+|++|++|||||||+++|+.....+...+ ++|..+....+++ ++..+.+||+||..
T Consensus 154 elk~~adVglVG~PNaGKSTLln~ls~a~~~va~yp----------------fTT~~p~~G~v~~~~~~~~~i~D~PGli 217 (335)
T PRK12299 154 ELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYP----------------FTTLHPNLGVVRVDDYKSFVIADIPGLI 217 (335)
T ss_pred EEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCC----------------CceeCceEEEEEeCCCcEEEEEeCCCcc
Confidence 4554 4789999999999999999998543332222 3466666666666 45789999999963
Q ss_pred h-------hHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH-----cCCCeEEEEEeeccccchhhHHHHHHHH
Q psy5021 726 D-------YIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQ-----VGVPNIVVFLNKADCVQDKELLDLVEME 792 (1021)
Q Consensus 726 ~-------~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~-----~~ip~iIvviNK~Dl~~~~~~~~~~~~~ 792 (1021)
+ +...++..+..+|++++|+|+++.. ..+...+...+.. .+.| +++|+||+|+.+...... .+
T Consensus 218 ~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp-~IIV~NKiDL~~~~~~~~---~~ 293 (335)
T PRK12299 218 EGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKP-RILVLNKIDLLDEEEERE---KR 293 (335)
T ss_pred CCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCC-eEEEEECcccCCchhHHH---HH
Confidence 2 4455666778899999999998643 2333333344433 2566 888999999975322111 12
Q ss_pred HHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 793 IRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 793 ~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+..+++.. ..+++++||+++ +++++|+++|.+.+.
T Consensus 294 ~~~~~~~~-----~~~i~~iSAktg-----------~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 294 AALELAAL-----GGPVFLISAVTG-----------EGLDELLRALWELLE 328 (335)
T ss_pred HHHHHHhc-----CCCEEEEEcCCC-----------CCHHHHHHHHHHHHH
Confidence 22222222 246899999987 389999999887653
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-14 Score=142.31 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=97.4
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh-----
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY----- 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~----- 727 (1021)
++..+|.+++|||||+++|++.... .+...+.|.+.....+...+..+.||||||+.+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE----------------VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEER 65 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCc----------------cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCC
Confidence 4567899999999999999985321 1112244555555555566789999999998421
Q ss_pred --H-HHHHHHh-hhCCEEEEEEECCCCCc---HHHHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 728 --I-KNMITGA-AQMDGAILVCSAVDGPM---PQTREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 728 --~-~~~~~~~-~~aD~ailVvDa~~g~~---~qt~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
. ....... ..+|++|+|+|+++... ....+++..+... +.| +|+|+||+|+.+... ... ..++.+
T Consensus 66 ~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~-~~~----~~~~~~ 139 (168)
T cd01897 66 NTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDLLTFED-LSE----IEEEEE 139 (168)
T ss_pred chHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCC-eEEEEEccccCchhh-HHH----HHHhhh
Confidence 1 1122222 34699999999987432 2223445555444 677 999999999976322 111 222222
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
. ...+++++||++| +|+++++++|.+.
T Consensus 140 ~-----~~~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 166 (168)
T cd01897 140 L-----EGEEVLKISTLTE-----------EGVDEVKNKACEL 166 (168)
T ss_pred h-----ccCceEEEEeccc-----------CCHHHHHHHHHHH
Confidence 1 1357899999988 4899999988754
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=137.51 Aligned_cols=159 Identities=24% Similarity=0.266 Sum_probs=111.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH------ 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~------ 724 (1021)
..-+..+|.+|+|||||+|+|++.... .....+.|.|..+.+..+.. .+.|+|.||.
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~L--------------ArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~ 86 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNL--------------ARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVP 86 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcce--------------eecCCCCCccceeEEEEecC---cEEEEeCCCcccccCC
Confidence 456789999999999999999985421 22345669999888766543 3889999992
Q ss_pred ----hhhHHHHHHHhh---hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 725 ----ADYIKNMITGAA---QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 725 ----~~~~~~~~~~~~---~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
+++-+.+..|+. +-.++++++|+.+++...+++.+.++...++| ++|++||+|.+...++.+ ....+.+.
T Consensus 87 k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~-~~vv~tK~DKi~~~~~~k-~l~~v~~~- 163 (200)
T COG0218 87 KEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIP-VIVVLTKADKLKKSERNK-QLNKVAEE- 163 (200)
T ss_pred HHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCC-eEEEEEccccCChhHHHH-HHHHHHHH-
Confidence 344555555553 46889999999999999999999999999999 888999999987433222 22333322
Q ss_pred hccccCCC-ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGE-NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~-~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++... ...++..|+.++ .|+++|...|.+.+
T Consensus 164 --l~~~~~~~~~~~~~ss~~k-----------~Gi~~l~~~i~~~~ 196 (200)
T COG0218 164 --LKKPPPDDQWVVLFSSLKK-----------KGIDELKAKILEWL 196 (200)
T ss_pred --hcCCCCccceEEEEecccc-----------cCHHHHHHHHHHHh
Confidence 222211 111555666655 37888888876644
|
|
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-14 Score=146.05 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=76.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..|+|||||+++|......... + -.|+...........++....+++|||||+..
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~------------~-------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 62 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN------------F-------IATVGIDFRNKVVTVDGVKVKLQIWDTAGQER 62 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC------------c-------CCcccceeEEEEEEECCEEEEEEEEeCCCcHH
Confidence 5899999999999999999642211000 0 01221111111112223367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++|+|+|+++....+....| ..+. ..++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 63 FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 988888899999999999999875433222222 2332 2468999999999985
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.7e-14 Score=146.12 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=80.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+.-.+|+|+|+.|+|||||+++|+...- .. ..+..+.......+.+. +..+.++|||||
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~--~~-----------------~~~t~~~~~~~~~~~~~--~~~~~l~l~Dt~ 70 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--ED-----------------LAPTIGVDFKIKQLTVG--GKRLKLTIWDTA 70 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC--CC-----------------cCCCceeEEEEEEEEEC--CEEEEEEEEECC
Confidence 3346899999999999999999974321 10 00111122222222332 335789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHH-h----hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQS-Q----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~-~----~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++|+|+|+++....+.. ..|... . ..+.|+++|+||+|+.
T Consensus 71 G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 71 GQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred CchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999999876444433 335332 1 2467999999999985
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.9e-14 Score=145.32 Aligned_cols=117 Identities=18% Similarity=0.141 Sum_probs=79.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+...+|+++|..|+|||||+++|+...- .. .+ ...+.+......+.+ ++....+.|||||
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~--~~-----------~~-----~~t~~~~~~~~~~~~--~~~~~~l~l~D~~ 63 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTF--SG-----------SY-----ITTIGVDFKIRTVEI--NGERVKLQIWDTA 63 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC--CC-----------Cc-----CccccceeEEEEEEE--CCEEEEEEEEeCC
Confidence 3567899999999999999999963211 00 00 001111111122222 2335678999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh--hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~--~~~~p~iiviNK~D~~ 142 (1021)
|+..|...+..+++.+|++++|+|+++.-..+....| .... ....|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 64 GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred CchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 9999999999999999999999999876443333333 2222 2358999999999985
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=139.85 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=79.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+++|..|+|||||+++++...- .. +..+ |+........+..++....+.+|||||
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~--~~----------------~~~~--~~~~~~~~~~~~~~~~~~~l~i~D~~G 63 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF--DT----------------QLFH--TIGVEFLNKDLEVDGHFVTLQIWDTAG 63 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC--Cc----------------CcCC--ceeeEEEEEEEEECCeEEEEEEEeCCC
Confidence 456899999999999999999963211 00 0001 222111111222234467889999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-H----h---hcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-S----Q---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~----~---~~~~p~iiviNK~D~~ 142 (1021)
+..|...+..+++.+|++++|+|.++....+....|.. . . ..++|+++++||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 64 QERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred hHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 99999999999999999999999987654443333422 1 1 2468999999999985
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.6e-14 Score=141.65 Aligned_cols=154 Identities=19% Similarity=0.117 Sum_probs=102.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|...... ....+.|.++ ..+...+..+.+|||||+++|...
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~---------------~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV---------------TTIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc---------------cccCCcccce----EEEEECCEEEEEEECCCCHHHHHH
Confidence 467889999999999999999863210 0111223322 233446788999999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++|+|+|+++.. +....+++..... .++| +++++||+|+.+.. .. +++.+.++.......
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~----~~i~~~~~~~~~~~~ 143 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDAM-KP----HEIQEKLGLTRIRDR 143 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccCC-CH----HHHHHHcCCCccCCC
Confidence 888899999999999998743 2333344432221 3567 99999999986421 11 233333322112222
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+++++||++|. |+++++++|.+
T Consensus 144 ~~~~~~~SAk~g~-----------gv~~~~~~l~~ 167 (168)
T cd04149 144 NWYVQPSCATSGD-----------GLYEGLTWLSS 167 (168)
T ss_pred cEEEEEeeCCCCC-----------ChHHHHHHHhc
Confidence 3578999999883 88899988854
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-14 Score=145.41 Aligned_cols=153 Identities=16% Similarity=0.164 Sum_probs=101.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+-++|..++|||||+.++.... +. .+....++.+.....+..++ ..+.+|||+|+++|...+
T Consensus 3 vvvlG~~gVGKTSli~r~~~~~--------------f~--~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~ 66 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDT--------------FC--EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT 66 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhCC--------------CC--CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHH
Confidence 4577889999999999998743 11 11112233344444455555 567899999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.||++|+|+|.++....+. ..++..+... ++| +|+|.||+|+.+..+.. ..+..++.+.+. +.
T Consensus 67 ~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~---~~~~~~~a~~~~----~~ 138 (202)
T cd04120 67 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREIS---RQQGEKFAQQIT----GM 138 (202)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccC---HHHHHHHHHhcC----CC
Confidence 999999999999999998554333 3334444332 466 99999999986422211 122333333321 24
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.++.+||++|. |+++++++|.+.
T Consensus 139 ~~~etSAktg~-----------gV~e~F~~l~~~ 161 (202)
T cd04120 139 RFCEASAKDNF-----------NVDEIFLKLVDD 161 (202)
T ss_pred EEEEecCCCCC-----------CHHHHHHHHHHH
Confidence 68999999884 777777777653
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-14 Score=144.66 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=82.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
-.+..+|+|+|++|+|||||+++|...... ... . ...|.|..... +.+. ..+.+|||
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~~---------~------~~~~~t~~~~~--~~~~-----~~~~liDt 71 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKL-ART---------S------KTPGRTQLINF--FEVN-----DGFRLVDL 71 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-ccc---------c------CCCCcceEEEE--EEeC-----CcEEEEeC
Confidence 466789999999999999999999743211 000 0 11233433221 2222 26899999
Q ss_pred CCCC----------CcHHHHHHHhh---ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 85 PGHV----------DFTIEVERSLR---VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~----------~f~~~~~~~l~---~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
||+. +|......+++ .+|++++|+|++.+...++..+++.+...++|+++++||+|+..
T Consensus 72 pG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 72 PGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred CCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9963 23333444444 46899999999999999999889998888999999999999863
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-14 Score=139.62 Aligned_cols=152 Identities=18% Similarity=0.152 Sum_probs=104.2
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+..+|.+++|||||+++|++.... .+...+.+.+.....+..++ ..+.+|||||+.+|...+
T Consensus 3 i~liG~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~ 66 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDTFD----------------NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLI 66 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC----------------ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 567899999999999999974321 12233445555555555555 357899999999999888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHH-HcC--CCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLAR-QVG--VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~-~~~--ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...++.+|++++|+|+++....+. ..++.... ..+ +| +++++||+|+.+..... .++...+.+..+ +
T Consensus 67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~~~---~~~~~~~~~~~~-----~ 137 (161)
T cd01861 67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQVS---TEEGEKKAKELN-----A 137 (161)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCccC---HHHHHHHHHHhC-----C
Confidence 888999999999999987554333 33333332 333 67 99999999985422111 122233333322 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||+++. ++++++++|.+.
T Consensus 138 ~~~~~Sa~~~~-----------~v~~l~~~i~~~ 160 (161)
T cd01861 138 MFIETSAKAGH-----------NVKELFRKIASA 160 (161)
T ss_pred EEEEEeCCCCC-----------CHHHHHHHHHHh
Confidence 78999999873 889999988653
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-14 Score=142.30 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=79.7
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|....- .. . ....|+++ ..+.+. +..+.+|||
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~--~~------------~---~~t~g~~~----~~i~~~----~~~~~~~D~ 65 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDI--SH------------I---TPTQGFNI----KTVQSD----GFKLNVWDI 65 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCC--cc------------c---CCCCCcce----EEEEEC----CEEEEEEEC
Confidence 34466799999999999999999953210 00 0 01112222 234455 678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHH----HHhhcCCCEEEEEeCcCCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQP-QTETVWF----QSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~----~~~~~~~p~iiviNK~D~~~~ 144 (1021)
||+..|...+...++.+|++++|+|+++.... .....+. .....++|+++++||+|+...
T Consensus 66 ~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 66 GGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 99999999999999999999999999863211 1222222 223457999999999998643
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-14 Score=140.31 Aligned_cols=151 Identities=20% Similarity=0.161 Sum_probs=99.4
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|.+++|||||+++|...... . ...+.|.+ ...++..+..+.+|||||+.+|...+..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~------------~---~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVV------------T---TIPTIGFN----VETVTYKNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCc------------C---cCCccCcC----eEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 457899999999999999763211 0 01111222 2234456778999999999999988889
Q ss_pred HhhhCCEEEEEEECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 734 GAAQMDGAILVCSAVDGPM-PQTREHIL-LARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~-~qt~e~l~-~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
++..+|++|+|+|+++... ....+.+. ++.. .+.| +++++||+|+.+... .. ++...+....+...+.+
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~~ 136 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGALS-EA----EISEKLGLSELKDRTWS 136 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCCC-HH----HHHHHhCccccCCCcEE
Confidence 9999999999999987432 22233333 2222 3667 999999999875221 11 22222221112223467
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++||++| .|+++++++|.+
T Consensus 137 ~~~~Sa~~~-----------~gi~~l~~~l~~ 157 (158)
T cd04151 137 IFKTSAIKG-----------EGLDEGMDWLVN 157 (158)
T ss_pred EEEeeccCC-----------CCHHHHHHHHhc
Confidence 999999988 389999998854
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-14 Score=141.98 Aligned_cols=157 Identities=16% Similarity=0.126 Sum_probs=102.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+...++|.+++|||||+++|++..... ......|.+..............+.+|||||+++|...+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--------------AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 356788999999999999999743110 011122322222222222223567899999999999988
Q ss_pred HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++++|+|.++... .+..+++..+... ..| +++|+||+|+.+..... .++..++.+.++ .
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~ 138 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVVS---SERGRQLADQLG-----F 138 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHcC-----C
Confidence 889999999999999986433 2333444444433 345 99999999997532111 122233333343 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++++||++|. |+++|++.|.+.+
T Consensus 139 ~~~~~Sa~~~~-----------gv~~l~~~l~~~~ 162 (165)
T cd01865 139 EFFEASAKENI-----------NVKQVFERLVDII 162 (165)
T ss_pred EEEEEECCCCC-----------CHHHHHHHHHHHH
Confidence 68999999873 8899999887643
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-14 Score=141.95 Aligned_cols=156 Identities=17% Similarity=0.127 Sum_probs=103.5
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||++++++.... .......|.+.......+......+.+|||||+++|....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 45678899999999999999874311 1111223444433333333333568899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++++|+|+++....+. ..++..+... ++| +|||+||+|+.+.... ..++...+++..+ .
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~ 141 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREV---SYEEGEAFAKEHG-----L 141 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC---CHHHHHHHHHHcC-----C
Confidence 888999999999999986443333 3333334332 567 8999999998742211 1123334444433 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||+++ .|++++++.+.+.
T Consensus 142 ~~~e~Sa~~~-----------~~i~~~~~~~~~~ 164 (168)
T cd01866 142 IFMETSAKTA-----------SNVEEAFINTAKE 164 (168)
T ss_pred EEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 7899999987 3788888777653
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-14 Score=161.73 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=114.7
Q ss_pred ccc-ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhh
Q psy5021 649 LRS-NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~-~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~ 726 (1021)
|+. ..+|++|.+|+|||||+|+|++....+.. ..++|.......+...+ ..+.|+||||..+
T Consensus 156 lk~iadValVG~PNaGKSTLln~Lt~~k~~vs~----------------~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~ 219 (390)
T PRK12298 156 LKLLADVGLLGLPNAGKSTFIRAVSAAKPKVAD----------------YPFTTLVPNLGVVRVDDERSFVVADIPGLIE 219 (390)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhCCcccccC----------------CCCCccCcEEEEEEeCCCcEEEEEeCCCccc
Confidence 444 37999999999999999999985432222 22456666666666654 4699999999642
Q ss_pred -------hHHHHHHHhhhCCEEEEEEECCC----CCcHHHHHHHHHHHHc-----CCCeEEEEEeeccccchhhHHHHHH
Q psy5021 727 -------YIKNMITGAAQMDGAILVCSAVD----GPMPQTREHILLARQV-----GVPNIVVFLNKADCVQDKELLDLVE 790 (1021)
Q Consensus 727 -------~~~~~~~~~~~aD~ailVvDa~~----g~~~qt~e~l~~~~~~-----~ip~iIvviNK~Dl~~~~~~~~~~~ 790 (1021)
....++..+..+|++++|+|++. ....+...++..+... +.| +|+|+||+|+.+.++ +.
T Consensus 220 ~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP-~IlVlNKiDl~~~~e----l~ 294 (390)
T PRK12298 220 GASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKP-RWLVFNKIDLLDEEE----AE 294 (390)
T ss_pred cccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCC-EEEEEeCCccCChHH----HH
Confidence 34456677899999999999872 2223333444444432 567 788999999875322 22
Q ss_pred HHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC------CCCCCCCeeEEEEEEE
Q psy5021 791 MEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP------NRITDKPFLMPIEDVF 861 (1021)
Q Consensus 791 ~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~------~~~~~~p~~~~I~~~~ 861 (1021)
+.+..+.+.+++ ..+++++||+++ .++++|++.|.+.++.. ...++.+.++.+.++.
T Consensus 295 ~~l~~l~~~~~~---~~~Vi~ISA~tg-----------~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~Eii 357 (390)
T PRK12298 295 ERAKAIVEALGW---EGPVYLISAASG-----------LGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYH 357 (390)
T ss_pred HHHHHHHHHhCC---CCCEEEEECCCC-----------cCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHH
Confidence 233333333332 135899999987 38888888887766431 1233455555554443
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.6e-14 Score=140.98 Aligned_cols=111 Identities=18% Similarity=0.167 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+|+++|.+|+|||||++++....- .. .+.+ |+... ...+.+. +....+.+|||||+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~--~~-----------~~~~-------t~~~~~~~~~~~~--~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF--IE-----------SYDP-------TIEDSYRKQVEID--GRQCDLEILDTAGTE 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--Cc-----------ccCC-------cchheEEEEEEEC--CEEEEEEEEeCCCcc
Confidence 589999999999999999963221 10 0100 11111 1112222 335788999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-----HHHhhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-----FQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-----~~~~~~~~p~iiviNK~D~~ 142 (1021)
+|...+...++.+|++++|+|.++....+....| +.....++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 61 QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 9999999999999999999999875433333323 22224579999999999985
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.5e-14 Score=139.99 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=77.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeee--EEEeecccCceeEEEEcCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV--SIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~--~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+|+++|..++|||||+++|......... + .-.|+..... .+.+. .+....+.+|||||+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~-----------~-------~~~t~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~ 62 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK-----------N-------YLMTTGCDFVVKEVPVD-TDNTVELFIFDSAGQ 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc-----------c-------CCCceEEEEEEEEEEeC-CCCEEEEEEEECCCH
Confidence 6899999999999999999642111110 0 0112222211 12222 244688999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh--cCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~--~~~p~iiviNK~D~~ 142 (1021)
..|...+...++.+|++++|+|.++.........| ..+.. .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 63 ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99998899999999999999999875333322333 33332 368999999999984
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=153.58 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=78.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
+..+-.|+|+|.+|||||||+++|......+. ++ ...|..+....+.+.. ...+.++||
T Consensus 154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~va------------~y------~fTT~~p~ig~v~~~~---~~~~~i~D~ 212 (329)
T TIGR02729 154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIA------------DY------PFTTLVPNLGVVRVDD---GRSFVIADI 212 (329)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhcCCcccc------------CC------CCCccCCEEEEEEeCC---ceEEEEEeC
Confidence 34567899999999999999999964322111 11 1234555544555551 378999999
Q ss_pred CCCCC-------cHHHHHHHhhccCeEEEEEeCCCC---CchhHHHHH-HHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVD-------FTIEVERSLRVLDGAVIIICASSG---IQPQTETVW-FQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~-------f~~~~~~~l~~~D~~ilvvda~~g---~~~~t~~~~-~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
||+.+ +.....+.+..+|++|+|+|+++. ...+....| +.+.. .++|+++|+||+|+..
T Consensus 213 PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 213 PGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred CCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 99853 344556667789999999999864 122222223 33322 3689999999999864
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=139.51 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceee-eeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITIT-SASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~-~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+|+++|.+|+|||||+++++.. .... .+.+ |+. .....+.. ++....++||||||+.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~--~~~~-----------~~~~-------t~~~~~~~~~~~--~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSG--TFIE-----------KYDP-------TIEDFYRKEIEV--DSSPSVLEILDTAGTE 60 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--CCCC-----------CCCC-------chhheEEEEEEE--CCEEEEEEEEECCCcc
Confidence 6999999999999999998732 1111 0000 110 00111112 2335678899999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh----cCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~----~~~p~iiviNK~D~~ 142 (1021)
.|...+..+++.+|++|+|+|.++....+....| ..+.. .++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 61 QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred cccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 9999999999999999999999875433322222 33322 579999999999974
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=156.79 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=80.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
..+-.|+|+|.+|||||||+++|......+.. ..+.|.......+.+.. ...+.|+|||
T Consensus 157 k~iadValVG~PNaGKSTLln~Lt~~k~~vs~------------------~p~TT~~p~~Giv~~~~---~~~i~~vDtP 215 (390)
T PRK12298 157 KLLADVGLLGLPNAGKSTFIRAVSAAKPKVAD------------------YPFTTLVPNLGVVRVDD---ERSFVVADIP 215 (390)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhCCcccccC------------------CCCCccCcEEEEEEeCC---CcEEEEEeCC
Confidence 34557999999999999999999743321111 12456666655555551 2469999999
Q ss_pred CCCC-------cHHHHHHHhhccCeEEEEEeCCC----CCchhHHHHHHHHhh-----cCCCEEEEEeCcCCC
Q psy5021 86 GHVD-------FTIEVERSLRVLDGAVIIICASS----GIQPQTETVWFQSQK-----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~-------f~~~~~~~l~~~D~~ilvvda~~----g~~~~t~~~~~~~~~-----~~~p~iiviNK~D~~ 142 (1021)
|..+ +.....+.+..+|++++|+|++. ....+...+++.+.. .+.|.++|+||+|+.
T Consensus 216 Gi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 216 GLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 9854 34556778899999999999872 122233344444443 368999999999985
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-14 Score=141.40 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=101.5
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
..++|.+++|||||+++|++..... . .....+.+.....+..++ ..+.+|||||+++|...+
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~~~~--------------~--~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 66 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENKFKE--------------D--SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT 66 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC--------------C--CCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhH
Confidence 4578899999999999998743111 1 111222222223333333 467899999999999988
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...++.+|++++|+|+++....+. ..++..... .++| +++++||+|+.+.... ..++...+.+..+ +
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~ 137 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQREV---TFLEASRFAQENG-----L 137 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhccC---CHHHHHHHHHHcC-----C
Confidence 899999999999999998655433 333343333 3667 9999999998752111 1123344444443 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++++||+++. |+.++++.+.+
T Consensus 138 ~~~~~Sa~~~~-----------~i~~~~~~~~~ 159 (161)
T cd04113 138 LFLETSALTGE-----------NVEEAFLKCAR 159 (161)
T ss_pred EEEEEECCCCC-----------CHHHHHHHHHH
Confidence 79999999873 88999988865
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=138.70 Aligned_cols=152 Identities=20% Similarity=0.139 Sum_probs=99.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|..++|||||+++|...... ....+.|..+ ..++.....+.+|||||+++|...+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~---------------~~~pt~g~~~----~~~~~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV---------------TTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc---------------ccCCCCCcce----EEEEECCEEEEEEECCCCHhHHHHHH
Confidence 4578899999999999999753210 0111223222 23445678899999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
.+++.+|++|+|+|+++.. +.+..+++..+.. .+.| +++++||+|+.+... .+ ++...+....+....+
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~ 136 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMS-AA----EVTDKLGLHSLRNRNW 136 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCC-HH----HHHHHhCccccCCCCE
Confidence 9999999999999998643 2333444433322 2456 999999999864211 11 2222221111122345
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.++++||++|. |+++++++|.+
T Consensus 137 ~~~~~Sak~g~-----------gv~~~~~~l~~ 158 (159)
T cd04150 137 YIQATCATSGD-----------GLYEGLDWLSN 158 (159)
T ss_pred EEEEeeCCCCC-----------CHHHHHHHHhc
Confidence 67899999884 89999998854
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=136.36 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=78.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|++++|||||+++|......... .+..+.......+.. ++....+++|||||+..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~ 61 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY------------------KSTIGVDFKSKTIEI--DGKTVKLQIWDTAGQER 61 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc------------------CCceeeeeEEEEEEE--CCEEEEEEEEecCChHH
Confidence 6899999999999999999643221110 011111122222222 23367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
|......+++.+|++++|+|+++.........| ..... .+.|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 62 FRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 999999999999999999999874333333333 33333 358999999999984
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-14 Score=146.41 Aligned_cols=154 Identities=16% Similarity=0.092 Sum_probs=101.3
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhhhHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~~~~~ 730 (1021)
+.++|.+++|||||+++|++.... .....+.| .+.....+..+ ...+.||||||+++|...
T Consensus 3 ivivG~~~vGKTsli~~l~~~~~~--------------~~~~~t~~--~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~ 66 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHGIFS--------------QHYKATIG--VDFALKVIEWDPNTVVRLQLWDIAGQERFGGM 66 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCcee--EEEEEEEEEECCCCEEEEEEEECCCchhhhhh
Confidence 567889999999999999974311 01111222 23322333333 456789999999999988
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
+..+++.+|++|+|+|.++....+.. +++..+.. .++| +|+|+||+|+.+... ...+++.++++..++
T Consensus 67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~ 142 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRLA---KDGEQMDQFCKENGF 142 (201)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCcccccc---cCHHHHHHHHHHcCC
Confidence 88999999999999999875433322 22222221 3567 899999999963111 112345555555543
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++|. |+++++++|.+.+
T Consensus 143 ----~~~~e~Sak~~~-----------~v~e~f~~l~~~l 167 (201)
T cd04107 143 ----IGWFETSAKEGI-----------NIEEAMRFLVKNI 167 (201)
T ss_pred ----ceEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 468999999873 7788887776544
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.7e-14 Score=143.07 Aligned_cols=118 Identities=15% Similarity=0.109 Sum_probs=79.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec--------ccCcee
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV--------NKFKYM 78 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--------~~~~~~ 78 (1021)
...+|+++|..|+|||||++++....-. . . ....+........+.+.. .+....
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~--~-----------~-----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFN--P-----------K-----FITTVGIDFREKRVVYNSSGPGGTLGRGQRIH 64 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--c-----------c-----CCCccceEEEEEEEEEcCccccccccCCCEEE
Confidence 4578999999999999999999632110 0 0 000111111111222221 123578
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhh----cCCCEEEEEeCcCCC
Q psy5021 79 INIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 79 i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~----~~~p~iiviNK~D~~ 142 (1021)
+.||||||+..|...+...++.+|++|+|+|+++....+....|. .... .+.|+++|.||+|+.
T Consensus 65 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 999999999999999999999999999999998754444443342 2222 368999999999985
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=142.98 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=81.3
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHH
Q psy5021 14 IAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIE 93 (1021)
Q Consensus 14 iG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~ 93 (1021)
+|..++|||||+.+++. +... .+...|+.....+..+..++....+++|||||+.+|...
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~------------------~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l 60 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFE------------------KKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCC------------------CCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 58999999999999963 1111 112235544444444444445789999999999999999
Q ss_pred HHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hhh--cCCCEEEEEeCcCCC
Q psy5021 94 VERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 94 ~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~~--~~~p~iiviNK~D~~ 142 (1021)
+..+++.+|++|+|+|.++....+....|.. +.+ .++|+++|+||+|+.
T Consensus 61 ~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 61 RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred hHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 9999999999999999998866665555644 333 479999999999974
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=145.12 Aligned_cols=117 Identities=20% Similarity=0.101 Sum_probs=82.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
....+|+++|..|+|||||+++++...- .. +...|+........+..++....+++||||
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f--~~------------------~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~ 70 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC--CC------------------ccCCccceeEEEEEEEECCeEEEEEEEECC
Confidence 3456899999999999999999863211 00 011133222222333333346899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hh--hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQ--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~--~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++|+|+|.++....+...-|.. +. ..++|+++|+||+|+.
T Consensus 71 G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred CchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 999999888889999999999999998755555444522 22 3479999999999984
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.8e-14 Score=140.79 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=102.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|.+++|||||+++|++..... ...+ .++.+.....+..++ ..+.+|||||+++|..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~--t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 67 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL--------------DSKS--TIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCC--ccceEEEEEEEEECCEEEEEEEEeCCChHHHHH
Confidence 457789999999999999998743111 1112 223333333344444 4678999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..++..+|++|+|+|+++....+. .+++..+... ++| +++|+||+|+.+.... ..++...++...
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~~---~~~~~~~~~~~~----- 138 (165)
T cd01868 68 ITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAV---PTEEAKAFAEKN----- 138 (165)
T ss_pred HHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccC---CHHHHHHHHHHc-----
Confidence 88888999999999999986443322 2333333332 466 9999999998752211 112333333332
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.++++++||++|. |++++++.|.+.
T Consensus 139 ~~~~~~~Sa~~~~-----------~v~~l~~~l~~~ 163 (165)
T cd01868 139 GLSFIETSALDGT-----------NVEEAFKQLLTE 163 (165)
T ss_pred CCEEEEEECCCCC-----------CHHHHHHHHHHH
Confidence 2579999999873 889999988653
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-14 Score=155.48 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=94.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-+++|+|.||+|||||+|+|+.+..+|.. ...|.|.+.-...+..+ ++.+.++||+|..
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-----------------dI~GTTRDviee~i~i~----G~pv~l~DTAGiR 276 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVT-----------------DIAGTTRDVIEEDINLN----GIPVRLVDTAGIR 276 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEec-----------------CCCCCccceEEEEEEEC----CEEEEEEecCCcc
Confidence 46999999999999999999988888776 24577777777788888 9999999999986
Q ss_pred CcHHH--------HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIE--------VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~--------~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
+-... ...++..||.+++|+|++.+...+...++. +...+.|+++|+||+|+...
T Consensus 277 et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 277 ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 54333 445678999999999999987777777766 66678999999999999643
|
|
| >cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.9e-14 Score=121.65 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=75.0
Q ss_pred eeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccc
Q psy5021 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERG 932 (1021)
Q Consensus 853 ~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 932 (1021)
|||+|+++|+.++.|++++|+|++|.+++||++.+.|.+. .++|++|+.++.++++|.|||+|+++|++ ..++++|
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~--~~~V~si~~~~~~~~~a~aGd~v~l~l~~--~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGK--TSRVKSIETFDGELDEAGAGESVTLTLED--EIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCC--eEEEEEEEECCcEeCEEcCCCEEEEEECC--ccccCCC
Confidence 6899999999988888899999999999999999999754 58999999999999999999999999984 7889999
Q ss_pred eEEee
Q psy5021 933 QVLAK 937 (1021)
Q Consensus 933 ~vl~~ 937 (1021)
+|||.
T Consensus 77 ~vl~~ 81 (81)
T cd03695 77 DVIVA 81 (81)
T ss_pred CEEeC
Confidence 99974
|
Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-14 Score=139.45 Aligned_cols=96 Identities=21% Similarity=0.139 Sum_probs=66.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC-
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV- 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~- 88 (1021)
+|+++|++|+|||||+++|..... . ...|+ .+.|. . .+|||||+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~---------------~-------~~~t~-----~~~~~----~---~~iDt~G~~~ 47 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI---------------L-------YKKTQ-----AVEYN----D---GAIDTPGEYV 47 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc---------------c-------cccce-----eEEEc----C---eeecCchhhh
Confidence 799999999999999999952210 0 00121 23343 2 689999983
Q ss_pred ---CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 89 ---DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ---~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+......+++.+|++|+|+|++++...+...++.. .+.|+++++||+|+.
T Consensus 48 ~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 48 ENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred hhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 233333456789999999999998876665433332 245999999999985
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.6e-14 Score=140.48 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=101.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||++++++.... .......|.+.......+......+.+|||||+++|....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~--------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFN--------------PSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCC--------------cccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 56778899999999999999874311 1111222333322222232223467899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...++.+|++++|+|++++...+. .+++..+... ++| +++|+||+|+.+.... ..++...+.+..+ .
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~ 140 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRVV---SKEEGEALADEYG-----I 140 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC---CHHHHHHHHHHcC-----C
Confidence 888899999999999987543322 3333333332 567 8999999999752211 1122333444333 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||++| .+++++++.+.+.
T Consensus 141 ~~~~~Sa~~~-----------~~v~~~~~~i~~~ 163 (167)
T cd01867 141 KFLETSAKAN-----------INVEEAFFTLAKD 163 (167)
T ss_pred EEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 7899999987 3888888887653
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.2e-14 Score=140.02 Aligned_cols=153 Identities=17% Similarity=0.120 Sum_probs=99.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+..+++|.+++|||||++++++..... ......+ +.....+..++ ..+.+|||||+++|..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~--------------~~~~t~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVT--------------DYDPTIE---DSYTKQCEIDGQWAILDILDTAGQEEFSA 65 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCc--------------ccCCCcc---ceEEEEEEECCEEEEEEEEECCCCcchhH
Confidence 456788999999999999998743110 0001111 11111222333 4678899999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++++|+|+++....+. ..++..+.. .++| +++++||+|+....... .++..++++..+
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~~~---~~~~~~~~~~~~--- 138 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRKVS---REEGQELARKLK--- 138 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCccccccceec---HHHHHHHHHHcC---
Confidence 88899999999999999987543222 233333222 3677 89999999986522111 123344444433
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++|. |++++++.|...
T Consensus 139 --~~~~~~Sa~~~~-----------~i~~l~~~l~~~ 162 (164)
T cd04145 139 --IPYIETSAKDRL-----------NVDKAFHDLVRV 162 (164)
T ss_pred --CcEEEeeCCCCC-----------CHHHHHHHHHHh
Confidence 468999999873 889999988653
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=142.87 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=80.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+..++|+++|++|+|||||+++|+..... .. . ....|.|...... .+ +..+.|||
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~-~~---~------------~~~~~~t~~~~~~--~~-----~~~l~l~D 76 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNL-AR---T------------SKTPGRTQLINFF--EV-----NDKLRLVD 76 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-cc---c------------cCCCCceeEEEEE--ec-----CCeEEEeC
Confidence 5677899999999999999999999742210 00 0 0112334332211 11 36799999
Q ss_pred CCCCC----------CcHHHHHHHhhc---cCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 84 TPGHV----------DFTIEVERSLRV---LDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG~~----------~f~~~~~~~l~~---~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|||+. .|......+++. ++++++|+|+..+.......+++.+...++|+++++||+|+..
T Consensus 77 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 77 LPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK 149 (196)
T ss_pred CCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 99963 233334444444 4688899999888777776777777778999999999999853
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=142.04 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=77.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
|+|+++|++|+|||||+++|+........ . .. +.......+.+. +..+.+.+|||||+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~----~------~t---------~~~~~~~~~~~~--~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY----Y------PT---------IENTFSKIIRYK--GQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc----C------cc---------hhhhEEEEEEEC--CEEEEEEEEECCChH
Confidence 78999999999999999999742211000 0 00 000001112222 235778999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHH-HHHH----hhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETV-WFQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~-~~~~----~~~~~p~iiviNK~D~~ 142 (1021)
+|......++..+|++++|+|.++....+.... |... ...++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 61 EYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 999999999999999999999998654443333 2333 23468999999999975
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=158.72 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=86.9
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|++|+|||||+++|+....++.. ...|.|.+.....+.++ ++.+++|||||+
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-----------------~~pgtTrd~~~~~i~~~----g~~v~l~DTaG~ 261 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVS-----------------DIKGTTRDVVEGDFELN----GILIKLLDTAGI 261 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccC-----------------CCCCcEEEEEEEEEEEC----CEEEEEeeCCCc
Confidence 357999999999999999999754333221 12456666666667777 788999999999
Q ss_pred CCcHHH--------HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIE--------VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~--------~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
.++... ...+++.+|++|+|+|++++...... .+..+...++|+++|+||+|+..
T Consensus 262 ~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 262 REHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred ccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 776543 34577899999999999987765554 55666667899999999999853
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-14 Score=150.86 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=117.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhC-ceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERG-ITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rg-iTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..-+.|+++|++|+|||||++.|+...... +.. ...| +++ .... +.+++++||
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----------~~~------~~~g~i~i------~~~~----~~~i~~vDt 90 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----------NIS------DIKGPITV------VTGK----KRRLTFIEC 90 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC----------ccc------cccccEEE------EecC----CceEEEEeC
Confidence 345779999999999999999997432110 000 1122 121 1112 678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEE-EEeCcCCCCC--CHHHHHHHHHHHhCCc-
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMI-FVNKMDRIGA--NYNNCIIDIKKKFNCI- 160 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~~--~~~~~~~~i~~~l~~~- 160 (1021)
||+. ..+..+++.+|.+++|+|+..+...++..+|..+...++|.++ |+||+|+... ..++...++++.+...
T Consensus 91 Pg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~ 167 (225)
T cd01882 91 PNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV 167 (225)
T ss_pred CchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhh
Confidence 9975 6677788999999999999999999999999999888999655 9999999643 2455666776654321
Q ss_pred -----ee------eeeeecccCCceeeEEecccceeeeecCCC
Q psy5021 161 -----VL------PINFNIGIEENYEGIVDIINKKSFFWKENS 192 (1021)
Q Consensus 161 -----~~------~~~~p~~~~~~~~g~id~~~~~~~~~~~~~ 192 (1021)
.. ++++|..++..|.+++++++++.+.|.+..
T Consensus 168 ~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r 210 (225)
T cd01882 168 YQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSH 210 (225)
T ss_pred CCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCC
Confidence 22 345688888899999999999999997655
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=143.93 Aligned_cols=109 Identities=18% Similarity=0.131 Sum_probs=79.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+++|+...- . ++ ..|+........+. .+.+++|||||+..
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f--~------------~~-------~~Tig~~~~~~~~~----~~~l~iwDt~G~e~ 56 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF--K------------DT-------VSTVGGAFYLKQWG----PYNISIWDTAGREQ 56 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC--C------------CC-------CCccceEEEEEEee----EEEEEEEeCCCccc
Confidence 689999999999999999963211 0 00 11333333333455 78899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHHh---hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQSQ---KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~~---~~~~p~iiviNK~D~~~ 143 (1021)
|......+++.+|++|+|+|+++........ .|..+. ..++|+|+|.||+|+..
T Consensus 57 ~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 57 FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred chhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999999999999999754333332 233332 24689999999999863
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=140.14 Aligned_cols=153 Identities=15% Similarity=0.025 Sum_probs=100.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+....+|.+++|||||++++++.... .+....++.+.....+..++ ..+.||||||+++|..
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFD----------------TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS 69 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC----------------cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH
Confidence 45678889999999999999863211 11111222333223333334 4567899999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
.+..+++.+|++++|+|.++....+.. ++...+.. .++| +++++||+|+..... ..+++.++++..+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~----~~~~~~~~~~~~~ 144 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPERQV----STEEAQAWCRENG 144 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECcccccccc----CHHHHHHHHHHCC
Confidence 888899999999999999875432222 22222221 2467 899999999864111 1234445555444
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
. .+++++||++|. ++.++++.+.+
T Consensus 145 ~----~~~~e~Sa~~~~-----------~v~~~~~~~~~ 168 (170)
T cd04116 145 D----YPYFETSAKDAT-----------NVAAAFEEAVR 168 (170)
T ss_pred C----CeEEEEECCCCC-----------CHHHHHHHHHh
Confidence 2 478999999873 88888888764
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=139.95 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=82.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+...+|+++|..++|||||+.++.... ... +....++......++.. ++..+.+++||||
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~--~~~----------------~~~~t~~~~~~~~~i~~--~~~~~~l~iwDt~ 63 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGS--TES----------------PYGYNMGIDYKTTTILL--DGRRVKLQLWDTS 63 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC--CCC----------------CCCCcceeEEEEEEEEE--CCEEEEEEEEeCC
Confidence 456789999999999999999996311 100 00111222221122222 2346889999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh--hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~--~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++|+|+|.++....+....| ..+. ..+.|+|++.||+|+.
T Consensus 64 G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 64 GQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 9999999999999999999999999986554444444 3332 2478999999999984
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=135.32 Aligned_cols=111 Identities=18% Similarity=0.157 Sum_probs=80.7
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcH-
Q psy5021 13 IIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFT- 91 (1021)
Q Consensus 13 iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~- 91 (1021)
|+|+.|+|||||+++|........ ...++.|.........+.. ...+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~---~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV-----------------SPVPGTTTDPVEYVWELGP---LGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc-----------------CCCCCcEECCeEEEEEecC---CCcEEEEECCCCCcccc
Confidence 589999999999999964322110 0122334443333333321 5689999999998775
Q ss_pred ------HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 92 ------IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 92 ------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
..+...++.+|++++|+|+..........++......+.|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 61 LGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred chhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 3455678999999999999998877777666777788999999999999864
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=142.54 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.|+++|..|+|||||+++|.... ... ++.+ |+... ...+.+. +..+.+++|||||+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~-----------~~~~-------t~~~~~~~~~~~~--~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVE-----------TYDP-------TIEDSYRKQVVVD--GQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc-----------cCCC-------chHhhEEEEEEEC--CEEEEEEEEECCCch
Confidence 38899999999999999997421 111 0000 11100 0111222 234678999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh------cCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK------YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~------~~~p~iiviNK~D~~ 142 (1021)
+|......+++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+.
T Consensus 59 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 59 EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred hhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 9999999999999999999999875433332223 33321 468999999999985
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=140.09 Aligned_cols=154 Identities=16% Similarity=0.111 Sum_probs=102.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+...++|.+++|||||++++++.... .+...+.+.+.....+..++ ..+.+|||||+++|..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 66 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT----------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 66 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH
Confidence 35678899999999999999874311 11112223333333343343 4678999999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.....++.+|++|+|+|+++... .+..+++..+... ++| ++++.||+|+.+..... .++...+.+..+
T Consensus 67 ~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 138 (166)
T cd01869 67 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKRVVD---YSEAQEFADELG---- 138 (166)
T ss_pred HHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhcccccCCC---HHHHHHHHHHcC----
Confidence 88888999999999999987432 2233444444332 467 89999999986522111 122333443333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++|. |++++++.|.+.
T Consensus 139 -~~~~~~Sa~~~~-----------~v~~~~~~i~~~ 162 (166)
T cd01869 139 -IPFLETSAKNAT-----------NVEQAFMTMARE 162 (166)
T ss_pred -CeEEEEECCCCc-----------CHHHHHHHHHHH
Confidence 579999999873 888888888653
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=137.26 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=78.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..++|||||+++++...- .. +...|+........+..++....+++|||||+.+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f--~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--DK------------------NYKATIGVDFEMERFEILGVPFSLQLWDTAGQER 61 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC------------------CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 588999999999999999974211 00 0112333333222233334467899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhhc----CCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQKY----KVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~~----~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++++|+|+++........-|. ...+. ..|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 62 FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 9999999999999999999998743333333343 33222 35689999999984
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.3e-14 Score=171.18 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=112.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+..+++.+|++|+|||||+|+|++.... ..+..|+|++.....+++++..+.++||||+.+|..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~----------------vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQR----------------VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCc----------------cCCCCCceEeeEEEEEEcCceEEEEEECCCcccccc
Confidence 4567899999999999999999974321 223468999998888999899999999999987642
Q ss_pred H----------HHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 730 N----------MITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 730 ~----------~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
. ...++ ..+|++++|+|+++... ....+..+.++++| +++++||+|+.+... . ..+++++.
T Consensus 66 ~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giP-vIvVlNK~Dl~~~~~-i---~id~~~L~ 138 (772)
T PRK09554 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIP-CIVALNMLDIAEKQN-I---RIDIDALS 138 (772)
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCC-EEEEEEchhhhhccC-c---HHHHHHHH
Confidence 1 11222 37899999999987433 33455566778999 899999999864221 1 12333344
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.+| ++++++||.++ +|++++++.+.+..
T Consensus 139 ~~LG-----~pVvpiSA~~g-----------~GIdeL~~~I~~~~ 167 (772)
T PRK09554 139 ARLG-----CPVIPLVSTRG-----------RGIEALKLAIDRHQ 167 (772)
T ss_pred HHhC-----CCEEEEEeecC-----------CCHHHHHHHHHHhh
Confidence 4444 57899999987 37888888887643
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=141.96 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=72.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+|+|..|+|||||+++++...- .. .+.+ .++.......+.+. +..+.+++|||||+.+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f--~~-----------~~~p-----t~~~~~~~~~i~~~--~~~~~l~i~Dt~G~~~ 61 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF--PE-----------EYIP-----TEHRRLYRPAVVLS--GRVYDLHILDVPNMQR 61 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC--Cc-----------ccCC-----ccccccceeEEEEC--CEEEEEEEEeCCCccc
Confidence 689999999999999999964211 00 0000 11111111122233 3357899999999876
Q ss_pred cH----HH----HHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh------hcCCCEEEEEeCcCCC
Q psy5021 90 FT----IE----VERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ------KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~----~~----~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~------~~~~p~iiviNK~D~~ 142 (1021)
|. .+ ...+++.+|++|+|+|+++....+....| +.+. ..++|+++|+||+|+.
T Consensus 62 ~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 62 YPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred CCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 52 11 34568899999999999986544433333 2222 2568999999999985
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=139.17 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=102.1
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
...++|.+++|||||+++|++.... ....+..|.+.......+......+.+|||||+++|.....
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFD--------------PDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--------------cccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhH
Confidence 4567899999999999999874311 11233344444433333333335688999999999988888
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTR-EHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..++.+|++++|+|+++....+.. .++..+.. .+.| +++++||+|+....... ++...+.+.. ++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~~----~~~~~~~~~~-----~~ 137 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKENREVTR----EEGLKFARKH-----NM 137 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccCH----HHHHHHHHHc-----CC
Confidence 888999999999999875443332 23333333 3566 88899999997422111 2233333333 35
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++++||++| +|++++++.+.+
T Consensus 138 ~~~~~Sa~~~-----------~gi~~~~~~~~~ 159 (161)
T cd01863 138 LFIETSAKTR-----------DGVQQAFEELVE 159 (161)
T ss_pred EEEEEecCCC-----------CCHHHHHHHHHH
Confidence 7999999987 388888888754
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=139.06 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=97.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||++++....... ....+.+ +.....+..++ ..+.||||||+++|...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~--------------~~~~t~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIFVE--------------KYDPTIE---DSYRKQIEVDGQQCMLEILDTAGTEQFTAM 65 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--------------ccCCchh---hhEEEEEEECCEEEEEEEEECCCccccchH
Confidence 46788999999999999999643110 0001111 11112233333 45678999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|.++... .....++..+.. .++| +|+++||+|+.+..... .++...+.+.++
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 137 (163)
T cd04136 66 RDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVVS---REEGQALARQWG---- 137 (163)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceec---HHHHHHHHHHcC----
Confidence 8888999999999999987433 223333333333 2567 89999999986522111 122233333332
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+++++||++|. |+.+++++|.+
T Consensus 138 -~~~~~~Sa~~~~-----------~v~~l~~~l~~ 160 (163)
T cd04136 138 -CPFYETSAKSKI-----------NVDEVFADLVR 160 (163)
T ss_pred -CeEEEecCCCCC-----------CHHHHHHHHHH
Confidence 579999999873 88999998865
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=153.18 Aligned_cols=159 Identities=19% Similarity=0.237 Sum_probs=103.8
Q ss_pred ccccc-ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCCh
Q psy5021 647 TDLRS-NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGH 724 (1021)
Q Consensus 647 ~~l~~-~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~ 724 (1021)
-+|+. ..+|++|++|+|||||+++|+.....+...+ .+|..+....++..+ ..+.||||||+
T Consensus 152 lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~----------------fTT~~p~ig~v~~~~~~~~~i~D~PGl 215 (329)
T TIGR02729 152 LELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYP----------------FTTLVPNLGVVRVDDGRSFVIADIPGL 215 (329)
T ss_pred EEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCC----------------CCccCCEEEEEEeCCceEEEEEeCCCc
Confidence 34554 4789999999999999999998543332222 234444444555555 78999999997
Q ss_pred hh-------hHHHHHHHhhhCCEEEEEEECCCC----CcHHHHHHHHHHHH-----cCCCeEEEEEeeccccchhhHHHH
Q psy5021 725 AD-------YIKNMITGAAQMDGAILVCSAVDG----PMPQTREHILLARQ-----VGVPNIVVFLNKADCVQDKELLDL 788 (1021)
Q Consensus 725 ~~-------~~~~~~~~~~~aD~ailVvDa~~g----~~~qt~e~l~~~~~-----~~ip~iIvviNK~Dl~~~~~~~~~ 788 (1021)
.. ....+.+.+..+|++++|+|+++. ...+...+...+.. .+.| ++||+||+|+.+... .+.
T Consensus 216 i~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~DL~~~~~-~~~ 293 (329)
T TIGR02729 216 IEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKIDLLDEEE-LAE 293 (329)
T ss_pred ccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCccCCChHH-HHH
Confidence 42 344556667789999999999864 12222222222322 2566 888999999976322 222
Q ss_pred HHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 789 VEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 789 ~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
. .+.+.+.++ .+++++||+++ +++++|+++|.+.+
T Consensus 294 ~---~~~l~~~~~-----~~vi~iSAktg-----------~GI~eL~~~I~~~l 328 (329)
T TIGR02729 294 L---LKELKKALG-----KPVFPISALTG-----------EGLDELLYALAELL 328 (329)
T ss_pred H---HHHHHHHcC-----CcEEEEEccCC-----------cCHHHHHHHHHHHh
Confidence 2 222322332 46899999987 48999999887643
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.1e-14 Score=135.40 Aligned_cols=153 Identities=18% Similarity=0.147 Sum_probs=109.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~~~~~ 730 (1021)
-.-+.|.+++|||.|+-++.. ++.+++....+.+|.....++.+++ ++.+|||+|+++|...
T Consensus 11 KiiliGds~VGKtCL~~Rf~~----------------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrti 74 (205)
T KOG0084|consen 11 KIILIGDSGVGKTCLLLRFKD----------------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTI 74 (205)
T ss_pred EEEEECCCCcChhhhhhhhcc----------------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhh
Confidence 345677799999999999987 3444555555556666666666554 5788999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+.+++++|+++|+|+|.++-... ....++..+... ++| .++|.||+|+.+..... .++.+++...++
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~~~v~---~~~a~~fa~~~~----- 145 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEKRVVS---TEEAQEFADELG----- 145 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCC-eEEEeeccccHhheecC---HHHHHHHHHhcC-----
Confidence 99999999999999999985443 334455555554 567 77899999997632211 123345555555
Q ss_pred eE-EEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 807 TK-IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 807 ~~-ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+ ++++||+.+. ++++.+..|...
T Consensus 146 ~~~f~ETSAK~~~-----------NVe~~F~~la~~ 170 (205)
T KOG0084|consen 146 IPIFLETSAKDST-----------NVEDAFLTLAKE 170 (205)
T ss_pred CcceeecccCCcc-----------CHHHHHHHHHHH
Confidence 34 9999999763 666666666543
|
|
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=138.61 Aligned_cols=150 Identities=15% Similarity=0.068 Sum_probs=97.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||+++|++..... ......+.+. ...+..++ ..+.+|||||+++|...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~l 65 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVD--------------EYDPTIEDSY---RKQVVIDGETCLLDILDTAGQEEYSAM 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcC--------------CcCCcchheE---EEEEEECCEEEEEEEEECCCCcchHHH
Confidence 45678999999999999999743110 0001111111 12223333 45778999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|.++....+. ..++..+.. .++| +++|+||+|+.+.... ..+...+.+..+
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~----~~~~~~~~~~~~---- 136 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTVS----SRQGQDLAKSYG---- 136 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccceec----HHHHHHHHHHhC----
Confidence 9999999999999999987433222 223332322 2567 8999999998752211 123333444333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+++++||++|. |+++++++|.+
T Consensus 137 -~~~~~~Sa~~~~-----------gi~~l~~~l~~ 159 (162)
T cd04138 137 -IPYIETSAKTRQ-----------GVEEAFYTLVR 159 (162)
T ss_pred -CeEEEecCCCCC-----------CHHHHHHHHHH
Confidence 478999999873 88999988865
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=140.35 Aligned_cols=154 Identities=18% Similarity=0.127 Sum_probs=102.1
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|..++|||||+++|.+.... .... |+......++..+..+.+|||||+.+|...+..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~---------------~~~~----T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~ 62 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFM---------------QPIP----TIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC---------------CcCC----cCceeEEEEEECCEEEEEEECCCChhcchHHHH
Confidence 457889999999999999874210 0011 222222345566788999999999999888889
Q ss_pred HhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc-CCCce
Q psy5021 734 GAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF-DGENT 807 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 807 (1021)
+++.+|++++|+|+++.. +....+++..+.. .+.| +++|+||+|+.+. ... .++.++++..++ ....+
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~ 136 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA-LSV----EEMTELLSLHKLCCGRSW 136 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC-CCH----HHHHHHhCCccccCCCcE
Confidence 999999999999998743 2233344433322 1356 9999999998642 111 223333322221 11235
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.++++||++|. |+++++++|.+.+.
T Consensus 137 ~~~~~Sa~~g~-----------gv~~~f~~l~~~~~ 161 (169)
T cd04158 137 YIQGCDARSGM-----------GLYEGLDWLSRQLV 161 (169)
T ss_pred EEEeCcCCCCC-----------CHHHHHHHHHHHHh
Confidence 78899999884 88999999976543
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=138.80 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=100.5
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+...++|..++|||||+++|.+..-. .......|.+.......+......+.+|||||+++|...+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--------------ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 34567899999999999999874211 1111122333322222332223467899999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++|+|+|+++....+. .+++...... +.| +++|.||+|+.+..... .++..++++..+ .
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~ 139 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDVT---YEEAKQFADENG-----L 139 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCcC---HHHHHHHHHHcC-----C
Confidence 999999999999999987543333 3343333332 345 89999999997532111 123333444333 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++++||++|. |+.++++.+..
T Consensus 140 ~~~e~Sa~~~~-----------~i~e~f~~l~~ 161 (166)
T cd04122 140 LFLECSAKTGE-----------NVEDAFLETAK 161 (166)
T ss_pred EEEEEECCCCC-----------CHHHHHHHHHH
Confidence 79999999883 78888777654
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=156.02 Aligned_cols=116 Identities=13% Similarity=0.140 Sum_probs=80.0
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
+..+..|+|+|.+|||||||+++|......+ .| ..+.|+.+....+.+. +..+.++||
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpkI------------ad------ypfTTl~P~lGvv~~~----~~~f~laDt 213 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPKI------------AD------YPFTTLVPNLGVVQAG----DTRFTVADV 213 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCccc------------cc------cCcccccceEEEEEEC----CeEEEEEEC
Confidence 4456789999999999999999996432211 11 2345777776667777 788999999
Q ss_pred CCCCCc-------HHHHHHHhhccCeEEEEEeCCCC---C--chhHH----HHHHHH----------hhcCCCEEEEEeC
Q psy5021 85 PGHVDF-------TIEVERSLRVLDGAVIIICASSG---I--QPQTE----TVWFQS----------QKYKVPKMIFVNK 138 (1021)
Q Consensus 85 PG~~~f-------~~~~~~~l~~~D~~ilvvda~~g---~--~~~t~----~~~~~~----------~~~~~p~iiviNK 138 (1021)
||..+- ..+..+.+..+|++|+|||++.. . ..... ++.... ...+.|+|+|+||
T Consensus 214 PGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNK 293 (500)
T PRK12296 214 PGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNK 293 (500)
T ss_pred CCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEEC
Confidence 997532 23456677889999999999741 1 11111 122222 2246899999999
Q ss_pred cCCC
Q psy5021 139 MDRI 142 (1021)
Q Consensus 139 ~D~~ 142 (1021)
+|++
T Consensus 294 iDL~ 297 (500)
T PRK12296 294 IDVP 297 (500)
T ss_pred ccch
Confidence 9985
|
|
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=140.16 Aligned_cols=154 Identities=17% Similarity=0.053 Sum_probs=101.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
......+|.+++|||||+++|++..... .....++.+.....+...+ ..+.+||+||+++|.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 70 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP----------------GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR 70 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 3678899999999999999998632110 0111222333444444555 457889999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++++|+|++++...+. ..++..+.. .++| +++++||+|+.+..+......+.+. +..
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~~~~i~~~~~~~~~---~~~---- 142 (169)
T cd04114 71 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDLAERREVSQQRAEEFS---DAQ---- 142 (169)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccCHHHHHHHH---HHc----
Confidence 988889999999999999987543322 233333333 3567 7888999998753222222222222 211
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+++++||++|. |++++++.|.+
T Consensus 143 -~~~~~~~Sa~~~~-----------gv~~l~~~i~~ 166 (169)
T cd04114 143 -DMYYLETSAKESD-----------NVEKLFLDLAC 166 (169)
T ss_pred -CCeEEEeeCCCCC-----------CHHHHHHHHHH
Confidence 2578999999873 88999998865
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=138.13 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=102.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++++... ...+....++.+.....+..++ ..+.+|||||+++|.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR----------------FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC----------------CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 3567889999999999999998632 1111122233333333444444 578899999999987
Q ss_pred H-HHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 729 K-NMITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 729 ~-~~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
. .+..+++++|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+...... .+..++.+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~---~~~~~~~~~~-- 139 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDLREQIQVPT---DLAQRFADAH-- 139 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccchhhcCCCH---HHHHHHHHHc--
Confidence 4 456667899999999999986654443 334344443 467 899999999865222111 2222333332
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++++||+++.++ .++.+++..+.+.
T Consensus 140 ---~~~~~e~Sa~~~~~~--------~~i~~~f~~l~~~ 167 (170)
T cd04115 140 ---SMPLFETSAKDPSEN--------DHVEAIFMTLAHK 167 (170)
T ss_pred ---CCcEEEEeccCCcCC--------CCHHHHHHHHHHH
Confidence 257899999985322 4788888877653
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=139.30 Aligned_cols=112 Identities=22% Similarity=0.310 Sum_probs=73.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++++... .. + ++.+... +.......+ ++....+++|||||+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~--~---------~~~~t~~----~~~~~~~~~----~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI--G---------EYDPNLE----SLYSRQVTI----DGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc--c---------ccCCChH----HhceEEEEE----CCEEEEEEEEECCCCcc
Confidence 48999999999999999997311 10 0 0100000 111111111 23356799999999985
Q ss_pred -cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHh-----hcCCCEEEEEeCcCCC
Q psy5021 90 -FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQ-----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 -f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~-----~~~~p~iiviNK~D~~ 142 (1021)
+.......++.+|++|+|+|+++....+....|. .+. ..++|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 60 ADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred cccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 4567888999999999999999875444333332 222 3479999999999974
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=138.11 Aligned_cols=154 Identities=21% Similarity=0.156 Sum_probs=101.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
...+...|.+++|||||+++|+..... ...+ |+......+...+..+.+|||||+++|...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~---------------~~~~----t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 75 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV---------------HTSP----TIGSNVEEIVYKNIRFLMWDIGGQESLRSS 75 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC---------------CcCC----ccccceEEEEECCeEEEEEECCCCHHHHHH
Confidence 356788999999999999999864311 0011 222222345556788999999999999988
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHIL-LARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~-~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..++..+|++++|+|+++... ...++.+. ++.. .++| +++++||+|+.+... .++ +.+.+........
T Consensus 76 ~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~~~-~~~----i~~~l~~~~~~~~ 149 (174)
T cd04153 76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGAMT-PAE----ISESLGLTSIRDH 149 (174)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCCCC-HHH----HHHHhCcccccCC
Confidence 8888999999999999987532 22223232 2222 2467 999999999865211 122 2222211111122
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++++++||++| +|+++++++|.+
T Consensus 150 ~~~~~~~SA~~g-----------~gi~e~~~~l~~ 173 (174)
T cd04153 150 TWHIQGCCALTG-----------EGLPEGLDWIAS 173 (174)
T ss_pred ceEEEecccCCC-----------CCHHHHHHHHhc
Confidence 467999999987 388999998854
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=136.50 Aligned_cols=153 Identities=17% Similarity=0.200 Sum_probs=102.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+...|.+++|||||+++|++...... ..+..+.+..............+.+||+||++.|.....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN--------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc--------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHH
Confidence 356789999999999999987432111 112223333333333333346788999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC---CCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 733 TGAAQMDGAILVCSAVDGPM-PQTREHILLARQVG---VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~~---ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
..++++|++++|+|+++... .....++..+.... .| +++++||+|+...... ..+++.++.... ..+
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~~~ 138 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQV---STEEAQQFAKEN-----GLL 138 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccccccccc---cHHHHHHHHHHc-----CCe
Confidence 99999999999999987432 22344444555543 67 9999999999632111 123334444332 357
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
++.+||+++. ++.+++++|.
T Consensus 139 ~~~~sa~~~~-----------~i~~~~~~i~ 158 (159)
T cd00154 139 FFETSAKTGE-----------NVEELFQSLA 158 (159)
T ss_pred EEEEecCCCC-----------CHHHHHHHHh
Confidence 9999999873 7888888774
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=139.03 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=102.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||+++|++... .....+.++.+.....+...+ ..+.+||+||+++|...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 65 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF----------------SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC----------------CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 356789999999999999997431 111112223333333444444 46789999999999988
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTRE-HILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e-~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
....++.+|++++|+|+++....+... ++..+.. .++| +++++||+|+....... .+...++.+..+
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~~~---~~~~~~~~~~~~----- 136 (164)
T smart00175 66 TSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQVS---REEAEAFAEEHG----- 136 (164)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcccccCCC---HHHHHHHHHHcC-----
Confidence 888899999999999998754433332 2333333 2567 99999999986522111 122333444443
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++|+.++ .+++++++.|.+.+
T Consensus 137 ~~~~e~Sa~~~-----------~~i~~l~~~i~~~~ 161 (164)
T smart00175 137 LPFFETSAKTN-----------TNVEEAFEELAREI 161 (164)
T ss_pred CeEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 46899999987 38889998887644
|
Rab GTPases are implicated in vesicle trafficking. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=153.52 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=76.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
....|+++|++|+|||||+|+|+... .+.. ...+.|++.....+.+.. +..+.||||||
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~-----------------~~~~tT~d~~~~~i~~~~---~~~i~l~DT~G 246 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAA-----------------DQLFATLDPTTRRLDLPD---GGEVLLTDTVG 246 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeec-----------------cCCccccCCEEEEEEeCC---CceEEEEecCc
Confidence 44679999999999999999997432 1111 112334444444555531 56899999999
Q ss_pred CC-CcH-------HHHHHHhhccCeEEEEEeCCCCCchhHH----HHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HV-DFT-------IEVERSLRVLDGAVIIICASSGIQPQTE----TVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~-~f~-------~~~~~~l~~~D~~ilvvda~~g~~~~t~----~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.. +.. ..+...+..+|++|+|+|+++....... .+++.+...++|+++|+||+|+.
T Consensus 247 ~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 247 FIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 82 211 1233457889999999999987544333 23333333478999999999985
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.2e-13 Score=137.82 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=77.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++|+...-. . ++ ..|+...........++....+.+|||||+.+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~-----------~~-------~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~ 61 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--E-----------EY-------VPTVFENYVTNIQGPNGKIIELALWDTAGQEE 61 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--C-----------CC-------CCeeeeeeEEEEEecCCcEEEEEEEECCCchh
Confidence 6899999999999999999742210 0 00 11222222111111124467899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHH-h--hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQS-Q--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~-~--~~~~p~iiviNK~D~~ 142 (1021)
|......+++.+|++|+|+|.++....+.. ..|... . ..++|+++|+||.|+.
T Consensus 62 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 62 YDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred HHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 998888899999999999999875444333 234322 2 2478999999999985
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=139.40 Aligned_cols=154 Identities=15% Similarity=0.124 Sum_probs=99.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.++++|.+++|||||+++|++..... .. ...++.+.....+..++ ..+.+||+||+++|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~--------------~~--~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN--------------QY--KATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL 65 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc--------------Cc--CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH
Confidence 35788999999999999998743110 01 11112222223344444 34668999999999998
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHH-H-HHHHc------CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHI-L-LARQV------GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l-~-~~~~~------~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
...+++.+|++|+|+|+++....+....| . +.... ++| +++++||+|+...... ..+++..+++..+
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 140 (172)
T cd01862 66 GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEKRQV---STKKAQQWCQSNG- 140 (172)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCce-EEEEEECccccccccc---CHHHHHHHHHHcC-
Confidence 88999999999999999875432222222 1 12221 577 8999999999741111 1123334444444
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.++++++|+++|. |++++++.+.+.
T Consensus 141 ---~~~~~~~Sa~~~~-----------gv~~l~~~i~~~ 165 (172)
T cd01862 141 ---NIPYFETSAKEAI-----------NVEQAFETIARK 165 (172)
T ss_pred ---CceEEEEECCCCC-----------CHHHHHHHHHHH
Confidence 2579999999873 788888887653
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=154.14 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=100.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCCh------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGH------ 724 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~------ 724 (1021)
..++++|++|+|||||+|+|++..... +...+.|.+.....+.. ++..+.||||||+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v----------------~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~ 253 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYA----------------ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPH 253 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceee----------------ccCCccccCCEEEEEEeCCCceEEEEecCcccccCCH
Confidence 578899999999999999999853111 11224566666666666 4678999999997
Q ss_pred ---hhhHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 725 ---ADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 725 ---~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
+.| +.+...+..||++++|+|++++...+. ..+...+... +.| +|+|+||+|+.+... .. ...
T Consensus 254 ~lie~f-~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl~~~~~-v~-------~~~ 323 (351)
T TIGR03156 254 ELVAAF-RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP-QLLVYNKIDLLDEPR-IE-------RLE 323 (351)
T ss_pred HHHHHH-HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC-EEEEEEeecCCChHh-HH-------HHH
Confidence 233 335566889999999999987654332 2223344443 567 899999999975221 11 111
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
. + ..+++++||++|. |+++|+++|.+
T Consensus 324 ~--~----~~~~i~iSAktg~-----------GI~eL~~~I~~ 349 (351)
T TIGR03156 324 E--G----YPEAVFVSAKTGE-----------GLDLLLEAIAE 349 (351)
T ss_pred h--C----CCCEEEEEccCCC-----------CHHHHHHHHHh
Confidence 1 1 1357999999873 89999998865
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=139.80 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=100.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe----------eCCeEEEEEec
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE----------SENKHYAHVDC 721 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~----------~~~~~i~liDt 721 (1021)
+...++|.+++|||||++++..... ........|.+.......+. .....+.||||
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 70 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKF--------------NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDT 70 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--------------CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeC
Confidence 4457888899999999999987431 11111122222222222222 12356789999
Q ss_pred CChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHh
Q psy5021 722 PGHADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIREL 796 (1021)
Q Consensus 722 pG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~ 796 (1021)
||+++|...+..+++.+|++++|+|+++....+. ..++..+... +.| +++|.||+|+.+..... .++..++
T Consensus 71 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v~---~~~~~~~ 146 (180)
T cd04127 71 AGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQVS---EEQAKAL 146 (180)
T ss_pred CChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCccC---HHHHHHH
Confidence 9999999999999999999999999987443222 3333334332 455 89999999987521111 1234444
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+..+ ++++++||++|. |++++++.|.+
T Consensus 147 ~~~~~-----~~~~e~Sak~~~-----------~v~~l~~~l~~ 174 (180)
T cd04127 147 ADKYG-----IPYFETSAATGT-----------NVEKAVERLLD 174 (180)
T ss_pred HHHcC-----CeEEEEeCCCCC-----------CHHHHHHHHHH
Confidence 44443 478999999873 78888888765
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=143.98 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=76.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee--eEEEeecccCceeEEEEcCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS--VSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~--~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+|+++|..|+|||||+++|....- . ..+ ..|+.... ..+.+. ++....+++|||||+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~--~-----------~~~-------~~T~~~d~~~~~i~~~-~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF--G-----------KSY-------KQTIGLDFFSKRVTLP-GNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--C-----------CCC-------CCceeEEEEEEEEEeC-CCCEEEEEEEECCCc
Confidence 589999999999999999963211 0 001 11332221 222222 123578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh------cCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK------YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~------~~~p~iiviNK~D~~ 142 (1021)
..|.......++.+|++|+|+|+++.-..+....| ..+.. .+.|+++|.||+|+.
T Consensus 61 ~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 61 SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 99999999999999999999999875433333333 33322 245789999999985
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=140.63 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=77.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|.+++|||||+++|+...-.... + -.|+........+..++....+++|||||...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~------------~-------~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 62 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGP------------Y-------QNTIGAAFVAKRMVVGERVVTLGIWDTAGSER 62 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcC------------c-------ccceeeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 6899999999999999999742211000 0 01232222221222234457789999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh--cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~--~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++|+|+|.++....+....| ..+.. .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 63 YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred hhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 988888888999999999999875433332333 33332 368999999999985
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=133.82 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=86.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+++|..++|||||+.++.. +.... ..-.||..+..+..+..++...++.+|||+|+.
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk--~~F~e------------------~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQE 65 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVK--DQFHE------------------NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQE 65 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhh--Ccccc------------------ccccccccEEEEEEEEeCCcEEEEEEEEcCCcc
Confidence 4689999999999999999852 11111 012377777777677666667889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCC-C---EEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV-P---KMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~-p---~iiviNK~D~~~ 143 (1021)
.|.+....++|.|++||+|+|.++--..+....|-.-.+.+. | +.+|.||+|+..
T Consensus 66 Ry~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 66 RYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred cccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 999999999999999999999998766666666644333332 3 344789999853
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=141.20 Aligned_cols=161 Identities=19% Similarity=0.235 Sum_probs=101.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEE-eeCCeEEEEEecCChhhhH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEY-ESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~-~~~~~~i~liDtpG~~~~~ 728 (1021)
+++.+..+|.+++|||||++++...... . ...+.|.+........ ...+..+.+|||||+++|.
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~------------~---~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 66 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFV------------N---TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR 66 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcC------------C---cCCccccceeEEEeeccCCCceEEEEEECCCcHhHH
Confidence 3567788999999999999999864311 0 0112233332222211 2234678999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHH----HHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHI----LLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l----~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++++|+|+++.... .....+ ......++| +++|+||+|+.+... .+ ++..++....+.
T Consensus 67 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~~~-~~----~~~~~~~~~~~~ 140 (183)
T cd04152 67 PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNALS-VS----EVEKLLALHELS 140 (183)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCccccCC-HH----HHHHHhCccccC
Confidence 8888888999999999999874321 122222 222335678 899999999864211 11 222222211111
Q ss_pred -CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 -GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 -~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
...++++++||++|. |+++++++|.+.+
T Consensus 141 ~~~~~~~~~~SA~~~~-----------gi~~l~~~l~~~l 169 (183)
T cd04152 141 ASTPWHVQPACAIIGE-----------GLQEGLEKLYEMI 169 (183)
T ss_pred CCCceEEEEeecccCC-----------CHHHHHHHHHHHH
Confidence 123578999999883 8888888877644
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.4e-14 Score=140.33 Aligned_cols=151 Identities=15% Similarity=0.056 Sum_probs=99.1
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--CeEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--NKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--~~~i~liDtpG~~~~~~~~ 731 (1021)
..++|.+++|||||+++++.... ......+.|. +.....+..+ ...+.+|||||+++|....
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~--------------~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGEF--------------EKKYVATLGV--EVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR 66 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC--------------CCCCCCceee--EEEEEEEEECCEEEEEEEEECCCChhhcccc
Confidence 56788999999999999986321 1111222233 2333333333 3567889999999987777
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTRE-HILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e-~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
...+..+|++|+|+|.+++...+... ++..+... ++| +|+|+||+|+.+.... .+...+.+.. ..+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~~~-----~~~~~~~~~~-----~~~ 135 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRKVK-----AKQITFHRKK-----NLQ 135 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhcccccCC-----HHHHHHHHHc-----CCE
Confidence 77788999999999999865444333 33333332 577 9999999998742211 1111222221 357
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++||++| +|+++++++|.+.+
T Consensus 136 ~~e~Sa~~~-----------~~v~~~f~~l~~~~ 158 (166)
T cd00877 136 YYEISAKSN-----------YNFEKPFLWLARKL 158 (166)
T ss_pred EEEEeCCCC-----------CChHHHHHHHHHHH
Confidence 999999988 38899999987644
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=138.60 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=99.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|.+++|||||+++|++.... .......|.+.......+......+.+|||||+++|...+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV--------------SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------------CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHH
Confidence 3567889999999999999974311 11111122222222233333345678999999999998888
Q ss_pred HHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQT-REHILLARQ--------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~--------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..++.+|++|+|+|.++....+. ..++..+.. .+.| +++|+||+|+.+.... ...+...+.+..+
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 141 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKHRAV---SEDEGRLWAESKG-- 141 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhccccccc---CHHHHHHHHHHcC--
Confidence 88899999999999987543222 233333322 2355 9999999998731110 1122223333333
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++||++| .|+++++++|.+.
T Consensus 142 ---~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 165 (168)
T cd04119 142 ---FKYFETSACTG-----------EGVNEMFQTLFSS 165 (168)
T ss_pred ---CeEEEEECCCC-----------CCHHHHHHHHHHH
Confidence 47899999987 3888898888653
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=140.40 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=105.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|..++|||||+.++.... +..+... .++.+.....+..++ ..+.||||||+++|..
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~--------------~~~~~~~--t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~ 70 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGS--------------TESPYGY--NMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT 70 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--------------CCCCCCC--cceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 556788889999999999998632 1111112 223333333344444 5678899999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
.+..+++.+|++|||+|.++... ...+.++..+... ++| +|||.||+|+.+.... ..++.+.+++..+
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~~v---~~~~~~~~a~~~~----- 141 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKRQV---ATEQAQAYAERNG----- 141 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchhccCC---CHHHHHHHHHHcC-----
Confidence 88888999999999999987554 3334455555432 566 9999999998642111 1234555555544
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++.+||++|. |++++++.|.+.
T Consensus 142 ~~~~e~SAk~g~-----------~V~~~F~~l~~~ 165 (189)
T cd04121 142 MTFFEVSPLCNF-----------NITESFTELARI 165 (189)
T ss_pred CEEEEecCCCCC-----------CHHHHHHHHHHH
Confidence 579999999884 788888887753
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-13 Score=131.81 Aligned_cols=119 Identities=20% Similarity=0.211 Sum_probs=91.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
..+.+-.|.++|..|+|||.|+.++. .|..+++....|-++....++.+ +++..++++||
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~------------------~~~f~e~~~sTIGVDf~~rt~e~--~gk~iKlQIWD 64 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFK------------------DDTFTESYISTIGVDFKIRTVEL--DGKTIKLQIWD 64 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhc------------------cCCcchhhcceeeeEEEEEEeee--cceEEEEEeee
Confidence 55677889999999999999999883 12233344444445544444444 46678999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hh---hcCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~---~~~~p~iiviNK~D~~ 142 (1021)
|+|+.+|...+.+++|.|+|+|+|.|.++--.......|-. +. ..++|.++|.||+|+.
T Consensus 65 TAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 65 TAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred ccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 99999999999999999999999999998666666666643 33 2468999999999985
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=137.85 Aligned_cols=158 Identities=25% Similarity=0.178 Sum_probs=102.1
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
|+.++|..++|||||+++|.+.. . .....+.|.+ ...+...+..+.+||+||+.+|...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~-------------~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--P-------------KKVAPTVGFT----PTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--C-------------ccccCcccce----EEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 45788999999999999998631 0 0111222332 334556778899999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHH--HHHhhhccccCCC
Q psy5021 733 TGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEME--IRELLTEYDFDGE 805 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~--~~~~l~~~~~~~~ 805 (1021)
.+++.+|++|+|+|+++... ......+..+.. .++| +++|+||+|+.+.... .++.+. +..+.+..+ .
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~~~-~~i~~~~~l~~~~~~~~---~ 136 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKNALLG-ADVIEYLSLEKLVNENK---S 136 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCCCH-HHHHHhcCcccccCCCC---c
Confidence 99999999999999987432 233444443332 3667 9999999998753211 112121 122221111 1
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
.+.++++||++|.... ...|+.+-+++|.
T Consensus 137 ~~~~~~~Sa~~g~~~~-----~~~g~~~~~~wl~ 165 (167)
T cd04161 137 LCHIEPCSAIEGLGKK-----IDPSIVEGLRWLL 165 (167)
T ss_pred eEEEEEeEceeCCCCc-----cccCHHHHHHHHh
Confidence 3678999999873110 0137888888875
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-13 Score=141.84 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=80.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+|+|+.++|||||+++|+...-.... + + .-|.+.... .+.+. +....+++|||
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~-----------~--~---ti~~~~~~~--~i~~~--~~~i~l~l~Dt 62 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------D--L---TIGVEFGAR--MITID--NKPIKLQIWDT 62 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------C--C---CccceEEEE--EEEEC--CEEEEEEEEeC
Confidence 456789999999999999999999642211000 0 0 001111111 22222 33567899999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHh---hcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~---~~~~p~iiviNK~D~~ 142 (1021)
||+..|...+...++.+|++|+|+|+++....+....|. .+. ..++|+++++||+|+.
T Consensus 63 ~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 999999999999999999999999998754444333332 222 2478999999999985
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=139.82 Aligned_cols=156 Identities=19% Similarity=0.119 Sum_probs=103.4
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|..++|||||+++|...... ...++.|.+ ...++..+..+.+||+||+++|...
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~---------------~~~pt~g~~----~~~~~~~~~~~~i~D~~Gq~~~~~~ 77 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV---------------TTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPL 77 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc---------------cccCCccee----EEEEEECCEEEEEEECCCCHHHHHH
Confidence 456788999999999999999853210 011222322 2235567788999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++|+|+|+++... ...++.+..... .++| ++|++||+|+.+... . +++.+.+....+...
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~~~~~l~l~~~~~~ 151 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLRQR 151 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCCCC-H----HHHHHHhCccccCCC
Confidence 9999999999999999987432 222323322211 2566 999999999865221 1 223333322122222
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
...++++||++| +|+.+++++|.+.+
T Consensus 152 ~~~~~~~Sa~~g-----------~gv~e~~~~l~~~~ 177 (181)
T PLN00223 152 HWYIQSTCATSG-----------EGLYEGLDWLSNNI 177 (181)
T ss_pred ceEEEeccCCCC-----------CCHHHHHHHHHHHH
Confidence 345778999988 48899999887644
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=138.29 Aligned_cols=141 Identities=26% Similarity=0.284 Sum_probs=95.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh----hhhH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH----ADYI 728 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~----~~~~ 728 (1021)
.+.++|++++|||||+|+|.+.... . + .|. . +.+... .+|||||. .++.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~------------~-----~---~~~---~--v~~~~~--~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL------------A-----R---KTQ---A--VEFNDK--GDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc------------C-----c---cce---E--EEECCC--CcccCCccccCCHHHH
Confidence 3678999999999999999863210 0 0 111 1 112222 26999995 5677
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
..+..++..+|++++|+|++++........+.. ..+.| +++++||+|+.+.+ . .++.++++..++. .|
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~--~----~~~~~~~~~~~~~---~p 123 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKR-QIAVISKTDMPDAD--V----AATRKLLLETGFE---EP 123 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCC-eEEEEEccccCccc--H----HHHHHHHHHcCCC---CC
Confidence 777788899999999999998754433322221 23567 89999999986421 1 2344455555542 58
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++||++| +|+++|++++.+.+.
T Consensus 124 ~~~~Sa~~g-----------~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 124 IFELNSHDP-----------QSVQQLVDYLASLTK 147 (158)
T ss_pred EEEEECCCc-----------cCHHHHHHHHHHhch
Confidence 999999988 489999999987553
|
|
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=137.81 Aligned_cols=153 Identities=18% Similarity=0.114 Sum_probs=99.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|.+++|||||++++++..-. .......+.+. .....+......+.+|||||+++|.....
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~--------------~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFR--------------ESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQR 67 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------------CCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHH
Confidence 4678899999999999999874311 00001111111 11222333345678999999999988888
Q ss_pred HHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 733 TGAAQMDGAILVCSAVDGPMP-QTREHILLARQ------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.++..+|++|+|+|.++.... ....++..+.. .++| +++|.||+|+.+..+... .+...+....
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~----- 138 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKREVSS---NEGAACATEW----- 138 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccCeecH---HHHHHHHHHh-----
Confidence 888999999999999875543 23444444444 3567 899999999865221111 1222233322
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++++++||++|. |++++++.|.+
T Consensus 139 ~~~~~e~SA~~g~-----------~v~~~f~~l~~ 162 (165)
T cd04140 139 NCAFMETSAKTNH-----------NVQELFQELLN 162 (165)
T ss_pred CCcEEEeecCCCC-----------CHHHHHHHHHh
Confidence 2568999999883 89999998865
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=141.28 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=101.1
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--CeEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--NKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--~~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|.+++|||||+++++....... +....++.+.....+..+ ...+.||||||+++|....
T Consensus 3 i~vvG~~~vGKTSli~~~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGAFLNG---------------NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcc---------------CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh
Confidence 56788999999999999987431110 011112222222223333 3567899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++|+|+|+++.... ....++..+... ++| +++|+||+|+....... ..+...+.+.++ .
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~~---~~~~~~l~~~~~-----~ 138 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVVK---REDGERLAKEYG-----V 138 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhccccC---HHHHHHHHHHcC-----C
Confidence 8889999999999999875432 233444444443 567 99999999986421111 122333333333 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++++||++| +++++++++|.+.+
T Consensus 139 ~~~e~Sa~~~-----------~~v~~l~~~l~~~~ 162 (191)
T cd04112 139 PFMETSAKTG-----------LNVELAFTAVAKEL 162 (191)
T ss_pred eEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 7999999987 38899999887655
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=124.42 Aligned_cols=82 Identities=30% Similarity=0.458 Sum_probs=74.8
Q ss_pred eEEEEEEEeecC-CCceEEEEEEEeeEEecCCEEEeCC---------CceeeEeceEEEeecCCeeccccccCCCEEEEe
Q psy5021 298 FVSLVFKIFHDP-FLGSLSFIRIYSGFIKVGDLVYNST---------KKVKEKIFRILRMFANSKKDINDAHFGDIVVIV 367 (1021)
Q Consensus 298 ~~~~V~k~~~~~-~~g~~~~~RV~sG~l~~gd~v~~~~---------~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 367 (1021)
++++|||+.+++ +.|+++|+|||||+|++||.|++.. ...++++.++|.++|.+..++++|.|||||++.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 8999999999999999999998765 345688999999999999999999999999999
Q ss_pred cCCccccCCeec
Q psy5021 368 GLKESSTGDTLC 379 (1021)
Q Consensus 368 gl~~~~~gdtl~ 379 (1021)
|++++..|+|.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999999998753
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-13 Score=139.32 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=107.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH------ 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~------ 724 (1021)
...++++|.+++|||||+++|++.. +........|.|.......+ +..+.||||||+
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~--------------~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~ 86 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRK--------------NLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVS 86 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC--------------CcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCC
Confidence 4568999999999999999999742 01112233455655444332 467999999995
Q ss_pred ----hhhHHHHHHHhh---hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 725 ----ADYIKNMITGAA---QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 725 ----~~~~~~~~~~~~---~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
++|......+++ .++++++|+|++.+......+.+.++...++| +++++||+|+.+..+ .+...+++...+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~-~iiv~nK~Dl~~~~~-~~~~~~~i~~~l 164 (196)
T PRK00454 87 KEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIP-VLIVLTKADKLKKGE-RKKQLKKVRKAL 164 (196)
T ss_pred chHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCc-EEEEEECcccCCHHH-HHHHHHHHHHHH
Confidence 344444444444 44789999999887666666666777778888 888999999976322 333344455555
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
... ..+++++||+++ .+++++++.|.+.+
T Consensus 165 ~~~-----~~~~~~~Sa~~~-----------~gi~~l~~~i~~~~ 193 (196)
T PRK00454 165 KFG-----DDEVILFSSLKK-----------QGIDELRAAIAKWL 193 (196)
T ss_pred Hhc-----CCceEEEEcCCC-----------CCHHHHHHHHHHHh
Confidence 432 257899999987 38889999887654
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=156.72 Aligned_cols=159 Identities=20% Similarity=0.225 Sum_probs=105.5
Q ss_pred ccccc-ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh
Q psy5021 647 TDLRS-NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA 725 (1021)
Q Consensus 647 ~~l~~-~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~ 725 (1021)
-+|+. ..++++|++|+|||||+|+|++....+.. ..++|+.+....++..+..++|+||||..
T Consensus 154 leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIad----------------ypfTTl~P~lGvv~~~~~~f~laDtPGli 217 (500)
T PRK12296 154 LELKSVADVGLVGFPSAGKSSLISALSAAKPKIAD----------------YPFTTLVPNLGVVQAGDTRFTVADVPGLI 217 (500)
T ss_pred EEecccceEEEEEcCCCCHHHHHHHHhcCCccccc----------------cCcccccceEEEEEECCeEEEEEECCCCc
Confidence 34554 47999999999999999999985433222 23567777777787888899999999953
Q ss_pred h-------hHHHHHHHhhhCCEEEEEEECCCC-----CcHHHH----HHHHHH----------HHcCCCeEEEEEeeccc
Q psy5021 726 D-------YIKNMITGAAQMDGAILVCSAVDG-----PMPQTR----EHILLA----------RQVGVPNIVVFLNKADC 779 (1021)
Q Consensus 726 ~-------~~~~~~~~~~~aD~ailVvDa~~g-----~~~qt~----e~l~~~----------~~~~ip~iIvviNK~Dl 779 (1021)
. .....+..+..+|++|+|||++.. +..+.. +...+. ...+.| +|||+||+|+
T Consensus 218 egas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP-~IVVlNKiDL 296 (500)
T PRK12296 218 PGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERP-RLVVLNKIDV 296 (500)
T ss_pred cccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCC-EEEEEECccc
Confidence 1 223445667889999999999742 111111 122222 123567 8889999999
Q ss_pred cchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 780 VQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 780 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+..+..+ .+...+...+ ++++++||+++ +++++|+++|.+.+
T Consensus 297 ~da~el~e----~l~~~l~~~g-----~~Vf~ISA~tg-----------eGLdEL~~~L~ell 339 (500)
T PRK12296 297 PDARELAE----FVRPELEARG-----WPVFEVSAASR-----------EGLRELSFALAELV 339 (500)
T ss_pred hhhHHHHH----HHHHHHHHcC-----CeEEEEECCCC-----------CCHHHHHHHHHHHH
Confidence 75332222 2222333333 47999999987 37888888877654
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=142.25 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=105.3
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+...++++|..++|||||+++|.+.... .... |.......+...+..+.+||+||+.++.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~---------------~~~~----T~~~~~~~i~~~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA---------------QHVP----TLHPTSEELTIGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc---------------ccCC----ccCcceEEEEECCEEEEEEECCCCHHHH
Confidence 45677899999999999999999874311 0011 2222223455567889999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHH----HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc-
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLAR----QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF- 802 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~----~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~- 802 (1021)
..+..++..+|++++|+|+++... ....+.+..+. ..+.| ++|++||+|+... ... +++.+++.....
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~-~~~----~~~~~~~~~~~~~ 151 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP-FLILGNKIDLPGA-VSE----EELRQALGLYGTT 151 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCC-cCH----HHHHHHhCccccc
Confidence 888888999999999999986432 22333333332 23577 8999999998641 112 223333322111
Q ss_pred ----------CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 803 ----------DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 803 ----------~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
....+.++++||++| +|+++++++|.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~~-----------~gv~e~~~~l~~~ 189 (190)
T cd00879 152 TGKGVSLKVSGIRPIEVFMCSVVKR-----------QGYGEAFRWLSQY 189 (190)
T ss_pred ccccccccccCceeEEEEEeEecCC-----------CChHHHHHHHHhh
Confidence 112357899999988 3889999998763
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-13 Score=134.74 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=78.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeee-EEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV-SIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~-~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.+|+++|..|+|||||+.++.+.. ... ++ -.|+..... .+.+ ++..+.+++|||||+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~~-----------~~-------~pt~~~~~~~~~~~--~~~~~~l~i~Dt~G~ 59 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FPS-----------EY-------VPTVFDNYAVTVMI--GGEPYTLGLFDTAGQ 59 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC-----------CC-------CCceeeeeEEEEEE--CCEEEEEEEEECCCc
Confidence 469999999999999999997421 100 01 113322111 2222 344588999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHH-HHh--hcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWF-QSQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~-~~~--~~~~p~iiviNK~D~~~ 143 (1021)
.+|...+..+++.+|++|+|+|.++....+.. ..|. ... ..++|++++.||+|+..
T Consensus 60 ~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 60 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 99988888899999999999999886544433 2343 222 23689999999999853
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-13 Score=135.75 Aligned_cols=151 Identities=22% Similarity=0.159 Sum_probs=101.4
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
.++.|.+++|||||++++++.... .... |.......++.....+.+||+||++.|...+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~---------------~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 62 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVV---------------TTIP----TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCC---------------CCCC----CcCcceEEEEECCEEEEEEECCCChhhHHHHHH
Confidence 467899999999999999975310 0011 122222334556788999999999999888888
Q ss_pred HhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 734 GAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
.+..+|++++|+|++++. .....+++..... .+.| +++++||+|+.... ..+++ .+.+.........++
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~-~~~~~----~~~~~~~~~~~~~~~ 136 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDLPGAL-SVSEL----IEKLGLEKILGRRWH 136 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCCcccc-CHHHH----HHhhChhhccCCcEE
Confidence 889999999999999753 2333444433322 3677 99999999987522 12222 222222112223578
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++||++|. |++++++.|..
T Consensus 137 ~~~~Sa~~~~-----------gv~~~~~~l~~ 157 (158)
T cd00878 137 IQPCSAVTGD-----------GLDEGLDWLLQ 157 (158)
T ss_pred EEEeeCCCCC-----------CHHHHHHHHhh
Confidence 9999999873 88888888753
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=140.32 Aligned_cols=115 Identities=22% Similarity=0.186 Sum_probs=86.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++-.+|.++|..|||||||+++|.. +.... ...|+......+.+. ++.++++|.+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~~-------------------~~pT~g~~~~~i~~~----~~~~~~~d~g 66 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEISE-------------------TIPTIGFNIEEIKYK----GYSLTIWDLG 66 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEEE-------------------EEEESSEEEEEEEET----TEEEEEEEES
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--ccccc-------------------cCcccccccceeeeC----cEEEEEEecc
Confidence 5667899999999999999999952 11111 112555555666776 8999999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHH----hhcCCCEEEEEeCcCCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQS----QKYKVPKMIFVNKMDRIGAN 145 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~----~~~~~p~iiviNK~D~~~~~ 145 (1021)
|+..|...+..++..+|++|+|||+++.- ..+....+..+ ...++|+++++||.|++++.
T Consensus 67 G~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 67 GQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp SSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred ccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc
Confidence 99999999999999999999999999642 23333333333 23479999999999998653
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=135.03 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=100.3
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
++++|.+++|||||+++|.+..... +....+.. ....+...+..+.+||+||+.+|...+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~----------------~~~~t~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE----------------DTIPTVGF--NMRKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc----------------CccCCCCc--ceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 4688999999999999999753110 01111112 22234455678899999999999999999
Q ss_pred HhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 734 GAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
++..+|++++|+|+++.. ..+..+++..+.. .++| +++++||+|+.+... .+.+.. .+.........++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~-~~~~~~----~~~~~~~~~~~~~ 137 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGALS-VDELIE----QMNLKSITDREVS 137 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCcC-HHHHHH----HhCcccccCCceE
Confidence 999999999999998632 2333444443322 4677 889999999875321 111111 1111111123468
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++|++++. ++++++++|.+
T Consensus 138 ~~~~Sa~~~~-----------gi~~l~~~l~~ 158 (159)
T cd04159 138 CYSISCKEKT-----------NIDIVLDWLIK 158 (159)
T ss_pred EEEEEeccCC-----------ChHHHHHHHhh
Confidence 8999999874 88899988854
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=160.60 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=108.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH---
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI--- 728 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~--- 728 (1021)
+.++++|.+|+|||||+|+|++..... .....|.|.+.....+..++..+.+|||||+.++.
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~---------------v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~i 280 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAI---------------VTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEV 280 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcc---------------cCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHH
Confidence 578999999999999999999743211 12345778888888888888999999999987542
Q ss_pred -----HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 -----KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 -----~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..++..+|++++|+|++++...+..+.+.. ..+.| +++|+||+|+.+.... . ..
T Consensus 281 e~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~p-iiiV~NK~DL~~~~~~-~----------~~---- 342 (449)
T PRK05291 281 EKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKP-VIVVLNKADLTGEIDL-E----------EE---- 342 (449)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCC-cEEEEEhhhccccchh-h----------hc----
Confidence 234556789999999999998766555444443 34667 8999999999752211 0 11
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
...+++++||++| +|++.|+++|.+.+.
T Consensus 343 -~~~~~i~iSAktg-----------~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 343 -NGKPVIRISAKTG-----------EGIDELREAIKELAF 370 (449)
T ss_pred -cCCceEEEEeeCC-----------CCHHHHHHHHHHHHh
Confidence 1246899999987 388999999987553
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-13 Score=138.95 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=102.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.....++|.+++|||||+++|.+..... .....+.+ ...+...+..+.+|||||+.++...
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~---------------~~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~~~ 77 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ---------------HQPTQHPT----SEELAIGNIKFTTFDLGGHQQARRL 77 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc---------------cCCccccc----eEEEEECCEEEEEEECCCCHHHHHH
Confidence 4667889999999999999998742110 01112222 2334456788999999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHH----HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc----
Q psy5021 731 MITGAAQMDGAILVCSAVDGP-MPQTREHILLAR----QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD---- 801 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~----~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~---- 801 (1021)
+..++..+|++++|+|+++.. .....+.+..+. ..++| +++++||+|+.... ..+++.+.+. +.....
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-~~~~i~~~l~-l~~~~~~~~~ 154 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYAA-SEDELRYALG-LTNTTGSKGK 154 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCC-CHHHHHHHcC-CCcccccccc
Confidence 899999999999999998743 223333343322 24677 99999999986411 1122222221 000000
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.......++++||+++ +|+++++++|.+
T Consensus 155 ~~~~~~~i~~~Sa~~~-----------~g~~~~~~wl~~ 182 (184)
T smart00178 155 VGVRPLEVFMCSVVRR-----------MGYGEGFKWLSQ 182 (184)
T ss_pred cCCceeEEEEeecccC-----------CChHHHHHHHHh
Confidence 0112457999999987 488999998865
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=137.18 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=99.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||+++++..... . ....+.+.+. ...+..++ ..+.+|||||+++|...
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~~~------------~--~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGIFV------------E--KYDPTIEDSY---RKQVEVDGQQCMLEILDTAGTEQFTAM 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC------------c--ccCCcchheE---EEEEEECCEEEEEEEEECCCcccchhH
Confidence 4678899999999999999853210 0 0111111111 22344443 45678999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|.++....+ ..+++..+.. .++| +++++||+|+.+..... ..+...+.+.++
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 137 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVG---KEQGQNLARQWG---- 137 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEEc---HHHHHHHHHHhC----
Confidence 999999999999999987644322 2333333332 3577 99999999997522111 112233333333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++||++|. |++++++++.+.
T Consensus 138 -~~~~~~Sa~~~~-----------~v~~~~~~l~~~ 161 (164)
T cd04175 138 -CAFLETSAKAKI-----------NVNEIFYDLVRQ 161 (164)
T ss_pred -CEEEEeeCCCCC-----------CHHHHHHHHHHH
Confidence 479999999873 888999888653
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.3e-13 Score=134.99 Aligned_cols=113 Identities=19% Similarity=0.074 Sum_probs=80.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|+.++|||||+.+++.. .... + .-.|+.... ...+..++..+.+++|||+|+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~--~f~~-----------~-------~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~ 60 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSN--KFPT-----------D-------YIPTVFDNF-SANVSVDGNTVNLGLWDTAGQE 60 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcC--CCCC-----------C-------CCCcceeee-EEEEEECCEEEEEEEEECCCCc
Confidence 46999999999999999999631 1110 0 112332221 1122224457889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHh--hcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQ--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~--~~~~p~iiviNK~D~~ 142 (1021)
+|......+++.+|++|+|+|.++.-..+.. ..| +.+. ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 61 DYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred cccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 9999999999999999999999876554443 334 3333 2479999999999985
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-13 Score=134.55 Aligned_cols=145 Identities=23% Similarity=0.212 Sum_probs=101.8
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH----
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI---- 728 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~---- 728 (1021)
..+.+|.+++|||||+++|++..... .....++|.+.....+...+..+.+|||||+.++.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 67 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAI---------------VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE 67 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEe---------------ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH
Confidence 56889999999999999999743111 11234667776666777778899999999986653
Q ss_pred ----HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 ----KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ----~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+...+..+|++++|+|+++.........+.. ..+.| +++++||+|+.+.... . ...
T Consensus 68 ~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~-vi~v~nK~D~~~~~~~----------~-----~~~ 129 (157)
T cd04164 68 KIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKP-IIVVLNKSDLLPDSEL----------L-----SLL 129 (157)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCC-EEEEEEchhcCCcccc----------c-----ccc
Confidence 234456789999999999997554444333332 45667 9999999999763211 1 111
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
...+++++||+++ .++++|+++|.+.
T Consensus 130 ~~~~~~~~Sa~~~-----------~~v~~l~~~l~~~ 155 (157)
T cd04164 130 AGKPIIAISAKTG-----------EGLDELKEALLEL 155 (157)
T ss_pred CCCceEEEECCCC-----------CCHHHHHHHHHHh
Confidence 1357899999977 3888999888653
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=141.71 Aligned_cols=150 Identities=16% Similarity=0.048 Sum_probs=99.3
Q ss_pred eeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHhh
Q psy5021 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAA 736 (1021)
Q Consensus 657 ~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~ 736 (1021)
+|..++|||||+.+++... +......+.|.+.......++.....+.||||||+++|...+..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~--------------f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE--------------FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC--------------CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhc
Confidence 4678999999999998632 11111122233333333333333457789999999999999999999
Q ss_pred hCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEec
Q psy5021 737 QMDGAILVCSAVDGPMPQ-TREHILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGS 813 (1021)
Q Consensus 737 ~aD~ailVvDa~~g~~~q-t~e~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iS 813 (1021)
.+|++|+|+|+++..+.+ ...++..+.. .++| +|+|+||+|+....... +.+ .+.+.. .++++++|
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~----~~~-~~~~~~-----~~~~~e~S 135 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDRKVKA----KSI-TFHRKK-----NLQYYDIS 135 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCH----HHH-HHHHHc-----CCEEEEEe
Confidence 999999999999865433 3344444444 3677 99999999985421111 111 222222 36799999
Q ss_pred ccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 814 ALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 814 a~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
|++|. |+.+++++|...+
T Consensus 136 Ak~~~-----------~v~~~F~~l~~~i 153 (200)
T smart00176 136 AKSNY-----------NFEKPFLWLARKL 153 (200)
T ss_pred CCCCC-----------CHHHHHHHHHHHH
Confidence 99883 8888888887644
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-14 Score=123.58 Aligned_cols=70 Identities=29% Similarity=0.451 Sum_probs=65.4
Q ss_pred eeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCe--EEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENF--KIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 593 EP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
||||.|||++|++++|+|+++|++|||+|++++..++. +.|+|++|++++++|.++||++|+|.+.+...
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~ 72 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSV 72 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEE
Confidence 89999999999999999999999999999998877655 89999999999999999999999999887653
|
This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=135.03 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=76.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+|+|+.|+|||||+++|+.... .. .+.+. +-......+.+ ++..+.+++||+||+.+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~-----------~~~~~------~~~~~~~~~~~--~~~~~~~~l~D~~g~~~ 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VE-----------EYDPT------IEDSYRKTIVV--DGETYTLDILDTAGQEE 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--Cc-----------CcCCC------hhHeEEEEEEE--CCEEEEEEEEECCChHH
Confidence 589999999999999999974321 00 00000 00111111222 22357899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
+.......++.+|++++|+|.++.... .....|.... ..++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 60 FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 999999999999999999999874322 2233333332 24799999999999853
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=137.47 Aligned_cols=155 Identities=17% Similarity=0.113 Sum_probs=100.2
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|..++|||||++++....-. .....+.| .+.....+..++ ..+.||||||+++|...+
T Consensus 3 i~ivG~~~vGKTsli~~~~~~~f~--------------~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKDVFD--------------KNYKATIG--VDFEMERFEILGVPFSLQLWDTAGQERFKCIA 66 (170)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCcee--eEEEEEEEEECCEEEEEEEEeCCChHHHHhhH
Confidence 457889999999999999974310 01111222 233223333333 568899999999999998
Q ss_pred HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC---CCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM-PQTREHILLARQVG---VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~~---ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++++|+|+++... ....+++....... .+++|+|.||+|+.+... ......+...+.+.++ .
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~-~~~~~~~~~~~~~~~~-----~ 140 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ-YALMEQDAIKLAAEMQ-----A 140 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc-ccccHHHHHHHHHHcC-----C
Confidence 899999999999999987432 22334444433322 233889999999865211 1112233334444333 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||++|. +++++++.|.+.
T Consensus 141 ~~~e~Sa~~g~-----------~v~~lf~~l~~~ 163 (170)
T cd04108 141 EYWSVSALSGE-----------NVREFFFRVAAL 163 (170)
T ss_pred eEEEEECCCCC-----------CHHHHHHHHHHH
Confidence 68999999873 888888888664
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-13 Score=137.59 Aligned_cols=155 Identities=21% Similarity=0.123 Sum_probs=103.3
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+..+|..++|||||+++|...... . ..++.|.. . ..+...+..+.+|||||+.+|...
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~------------~---~~~t~~~~--~--~~~~~~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV------------T---TIPTIGFN--V--ETVTYKNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC------------C---cCCccccc--e--EEEEECCEEEEEEECCCChhhHHH
Confidence 467888999999999999999753210 0 11122222 2 234456778999999999999998
Q ss_pred HHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.||++|+|+|+++.. .....+++..+.. .++| ++||+||+|+.+... .+ ++.+.+........
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~~~ 147 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDAMK-AA----EITEKLGLHSIRDR 147 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccCCC-HH----HHHHHhCccccCCC
Confidence 899999999999999998643 2344555544322 2466 999999999865211 11 22222221111223
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+.++++||++|. |+.+++++|.+.
T Consensus 148 ~~~~~~~Sa~~g~-----------gv~e~~~~l~~~ 172 (175)
T smart00177 148 NWYIQPTCATSGD-----------GLYEGLTWLSNN 172 (175)
T ss_pred cEEEEEeeCCCCC-----------CHHHHHHHHHHH
Confidence 4567899999883 889999988654
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.1e-13 Score=133.06 Aligned_cols=158 Identities=23% Similarity=0.251 Sum_probs=104.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh---
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD--- 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~--- 726 (1021)
++..++++|.+++|||||+|+|++........ ....+.......+...+..+.+|||||+..
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 66 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP---------------KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKK 66 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccC---------------CCCceeceEEEEEEcCCeEEEEEECCCCCcchH
Confidence 45678999999999999999998753221111 111222233333444567899999999653
Q ss_pred -----hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 727 -----YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 727 -----~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
+.......+..+|++++|+|+++.........+..+...+.| +++++||+|+....+..... +..+....+
T Consensus 67 ~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~---~~~~~~~~~ 142 (168)
T cd04163 67 KLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDLVKDKEDLLPL---LEKLKELGP 142 (168)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchhccccHHHHHHH---HHHHHhccC
Confidence 233445667899999999999987555555566666667788 88999999987422222222 222222222
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
..+++++|++++ .+++++++.|.+.
T Consensus 143 ----~~~~~~~s~~~~-----------~~~~~l~~~l~~~ 167 (168)
T cd04163 143 ----FAEIFPISALKG-----------ENVDELLEEIVKY 167 (168)
T ss_pred ----CCceEEEEeccC-----------CChHHHHHHHHhh
Confidence 246899999977 3788888888653
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-13 Score=135.22 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.++|||||++++....- .. . + -.|+.... ......++..+.+++|||||+.+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~------~-----~-------~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~ 60 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PE------E-----Y-------VPTVFDHY-AVSVTVGGKQYLLGLYDTAGQED 60 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC------C-----C-------CCceeeee-EEEEEECCEEEEEEEEeCCCccc
Confidence 689999999999999999964221 10 0 0 01111111 11112223367789999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHh--hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~--~~~~p~iiviNK~D~~~ 143 (1021)
|.......++.+|++|+|+|.++.-..+.. ..| ..+. ..++|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 61 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred ccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 988888889999999999999876443322 223 2222 45799999999999854
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=151.00 Aligned_cols=151 Identities=22% Similarity=0.177 Sum_probs=115.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh---h-
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD---Y- 727 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~---~- 727 (1021)
+...++|.||+|||||+|+|++....+... ..|+|.|.....+..++..+.++||+|.+. .
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd---------------I~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~V 282 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTD---------------IAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVV 282 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecC---------------CCCCccceEEEEEEECCEEEEEEecCCcccCccHH
Confidence 567788999999999999999976555443 459999999999999999999999999653 2
Q ss_pred ----HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 728 ----IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 728 ----~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
+......+.+||.+++|+|++++...+....+. +...+.| +++|+||+|+..... . ..+ + +
T Consensus 283 E~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~-~i~v~NK~DL~~~~~-~----~~~-~----~--- 347 (454)
T COG0486 283 ERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKP-IIVVLNKADLVSKIE-L----ESE-K----L--- 347 (454)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCC-EEEEEechhcccccc-c----chh-h----c---
Confidence 455666788999999999999876666666666 4445667 899999999987321 0 111 0 1
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
....+++.+|++++ +|++.|.++|.+.+.
T Consensus 348 ~~~~~~i~iSa~t~-----------~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 348 ANGDAIISISAKTG-----------EGLDALREAIKQLFG 376 (454)
T ss_pred cCCCceEEEEecCc-----------cCHHHHHHHHHHHHh
Confidence 11236899999987 388888888877553
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=140.95 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=103.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|..++|||||+++|.+... ........|. +.....+..++ ..+.||||||+++|..
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~--------------~~~~~~t~~~--~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTF--------------SGSYITTIGV--DFKIRTVEINGERVKLQIWDTAGQERFRT 70 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--------------CCCcCccccc--eeEEEEEEECCEEEEEEEEeCCCchhHHH
Confidence 5677888999999999999986431 0111122232 33333344443 4678999999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
.+..+++.+|++++|+|+++....+ ...++..+... ..| ++||+||+|+.+..... ..+...+.+..+
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~~~~---~~~~~~~~~~~~----- 141 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDDPERKVVE---TEDAYKFAGQMG----- 141 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccccC---HHHHHHHHHHcC-----
Confidence 8888999999999999998754333 23344433332 356 88999999987522111 123334444333
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++|. |+.+++++|.+.+
T Consensus 142 ~~~~e~Sa~~~~-----------gi~~lf~~l~~~~ 166 (199)
T cd04110 142 ISLFETSAKENI-----------NVEEMFNCITELV 166 (199)
T ss_pred CEEEEEECCCCc-----------CHHHHHHHHHHHH
Confidence 578999999874 7888888876643
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.8e-13 Score=151.09 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=78.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.-+..|+++|.+|||||||+++|......+.. ..+.|+.+....+.+.. +..+.++|||
T Consensus 156 k~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~------------------ypfTTl~PnlG~v~~~~---~~~~~laD~P 214 (424)
T PRK12297 156 KLLADVGLVGFPNVGKSTLLSVVSNAKPKIAN------------------YHFTTLVPNLGVVETDD---GRSFVMADIP 214 (424)
T ss_pred cccCcEEEEcCCCCCHHHHHHHHHcCCCcccc------------------CCcceeceEEEEEEEeC---CceEEEEECC
Confidence 34568999999999999999999743322211 12346666555555542 4689999999
Q ss_pred CCCC-------cHHHHHHHhhccCeEEEEEeCCCC--Cc--hhHHHHHHHHhh-----cCCCEEEEEeCcCCC
Q psy5021 86 GHVD-------FTIEVERSLRVLDGAVIIICASSG--IQ--PQTETVWFQSQK-----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~-------f~~~~~~~l~~~D~~ilvvda~~g--~~--~~t~~~~~~~~~-----~~~p~iiviNK~D~~ 142 (1021)
|..+ +.....+.+..+|++|+|+|+++. .. .....+.+.+.. .++|.++|+||+|+.
T Consensus 215 Gliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 215 GLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred CCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 9854 234455666779999999999753 11 222233333332 478999999999974
|
|
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-13 Score=139.99 Aligned_cols=157 Identities=16% Similarity=0.114 Sum_probs=101.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+...++|.+++|||||++++.+..... ....+.|.+. .....++.....+.+|||||+++|...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID--------------EYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc--------------CcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhh
Confidence 3567788999999999999999743110 0111112222 112223333345778999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|+++... ....+++..+... ++| +++++||+|+.+.... . ..+...+.+.++
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~i-~--~~~~~~~~~~~~---- 141 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQV-S--TGEGQELAKSFG---- 141 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc-C--HHHHHHHHHHhC----
Confidence 9899999999999999987543 2233333333322 567 9999999998642111 1 112223333333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++|. |+++++++|.+.+
T Consensus 142 -~~~~e~Sak~~~-----------gi~~~~~~l~~~l 166 (189)
T PTZ00369 142 -IPFLETSAKQRV-----------NVDEAFYELVREI 166 (189)
T ss_pred -CEEEEeeCCCCC-----------CHHHHHHHHHHHH
Confidence 478999999873 7888888876544
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.4e-13 Score=136.57 Aligned_cols=114 Identities=18% Similarity=0.069 Sum_probs=80.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-+|+++|..++|||||+.++.... ... +.-.|+.... ...+..++..+.+++|||||+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~--f~~------------------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e 62 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA--FPK------------------EYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQE 62 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCc------------------CCCCceEeee-EEEEEECCEEEEEEEEECCCch
Confidence 479999999999999999996421 100 0112333221 1112223446889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHH-Hh--hcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQ-SQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~-~~--~~~~p~iiviNK~D~~~ 143 (1021)
.|...+..+++.+|++|+|+|.++....+... .|.. +. ..++|+++|.||.|+..
T Consensus 63 ~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 63 EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 99998888999999999999998865444443 3532 22 24799999999999853
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=137.53 Aligned_cols=182 Identities=19% Similarity=0.226 Sum_probs=124.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
...++++|++++|||||++.|.+... ........|. +. .+...+..++|+||||+. ..
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~--------------~~~~~~~~g~-i~----i~~~~~~~i~~vDtPg~~---~~ 96 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYT--------------KQNISDIKGP-IT----VVTGKKRRLTFIECPNDI---NA 96 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc--------------cCcccccccc-EE----EEecCCceEEEEeCCchH---HH
Confidence 45678999999999999999986421 1111122332 11 122357889999999964 56
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh-ccccCCCceEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT-EYDFDGENTKI 809 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~i 809 (1021)
++..+..+|++++|+|++.+...++.+.+..+...|+|.+|+|+||+|+.+.....+.+.+++++.+. .+ + ...++
T Consensus 97 ~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~-~--~~~ki 173 (225)
T cd01882 97 MIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV-Y--QGAKL 173 (225)
T ss_pred HHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhh-C--CCCcE
Confidence 67778999999999999999988999999999889999667799999998544445555566655332 21 1 13589
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEee
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSI 863 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v 863 (1021)
+++||++... ..+.....++..|...-+...++.+....|.++.++.+
T Consensus 174 ~~iSa~~~~~------~~~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~ 221 (225)
T cd01882 174 FYLSGIVHGR------YPKTEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDI 221 (225)
T ss_pred EEEeeccCCC------CCHHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeecc
Confidence 9999997531 22334556777776544445555666666777776654
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-13 Score=136.42 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=70.6
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC---
Q psy5021 13 IIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD--- 89 (1021)
Q Consensus 13 iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~--- 89 (1021)
++|+.|+|||||+++|......+. ...+.|+......+.+.. ++.+++|||||+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~------------------~~~~~t~~~~~~~~~~~~---~~~~~i~DtpG~~~~~~ 59 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA------------------NYPFTTLEPNLGVVEVPD---GARIQVADIPGLIEGAS 59 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc------------------CCCceeecCcceEEEcCC---CCeEEEEeccccchhhh
Confidence 589999999999999964321000 112334444433333331 56789999999843
Q ss_pred ----cHHHHHHHhhccCeEEEEEeCCCCC------chhHHH-HHHHHh----------hcCCCEEEEEeCcCCCC
Q psy5021 90 ----FTIEVERSLRVLDGAVIIICASSGI------QPQTET-VWFQSQ----------KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 ----f~~~~~~~l~~~D~~ilvvda~~g~------~~~t~~-~~~~~~----------~~~~p~iiviNK~D~~~ 143 (1021)
+.......++.+|++++|+|+.+.. ...... .+..+. ..++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 60 EGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred cCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 2334566788899999999998762 121212 222222 14799999999999863
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-13 Score=141.57 Aligned_cols=148 Identities=22% Similarity=0.266 Sum_probs=97.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe-EEEEEecCChhh----
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK-HYAHVDCPGHAD---- 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~-~i~liDtpG~~~---- 726 (1021)
..++++|++|+|||||+++|++......+ ..+.|++.....+...+. .+.||||||+.+
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 105 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAED----------------QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH 105 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCC----------------ccceeccceeEEEEecCCceEEEeCCCccccCCCH
Confidence 57899999999999999999985311111 112344444444555444 899999999732
Q ss_pred -----hHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 727 -----YIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 727 -----~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
|. .+...+..+|++++|+|++++..... ..+...+... ++| +++|+||+|+.+.... . ..+
T Consensus 106 ~~~~~~~-~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl~~~~~~-~-------~~~ 175 (204)
T cd01878 106 QLVEAFR-STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDLLDDEEL-E-------ERL 175 (204)
T ss_pred HHHHHHH-HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEccccCChHHH-H-------HHh
Confidence 22 23344678999999999998654433 3333444333 466 8999999999763211 1 111
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.. ...+++++||+++. |+++++++|.+.
T Consensus 176 ~~-----~~~~~~~~Sa~~~~-----------gi~~l~~~L~~~ 203 (204)
T cd01878 176 EA-----GRPDAVFISAKTGE-----------GLDELLEAIEEL 203 (204)
T ss_pred hc-----CCCceEEEEcCCCC-----------CHHHHHHHHHhh
Confidence 11 13578999999873 888898888653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-13 Score=136.54 Aligned_cols=112 Identities=14% Similarity=0.160 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+.+++...- .. ++ -.|+...........++....+++|||+|+..
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f--~~-----------~~-------~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~ 61 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF--DE-----------DY-------IQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-----------CC-------CCccceEEEEEEEEECCEEEEEEEEeCCCchh
Confidence 589999999999999999964211 00 01 11322222111122234467899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
|...+..+++.+|++++|+|.++....+....| ..+.. ...| ++|+||+|+.
T Consensus 62 ~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 62 FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred HHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 999899999999999999999876444333333 33332 2455 6789999985
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-13 Score=136.34 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=98.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||+++|++....... +.. +.+.....+..++ ..+.+|||||+++|...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~--------------~~t---~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 64 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDY--------------DPT---IEDSYRKQIEIDGEVCLLDILDTAGQEEFSAM 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccc--------------CCc---hhhhEEEEEEECCEEEEEEEEECCCcccchHH
Confidence 3567899999999999999874311100 000 0011112222333 46778999999999988
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|+++....+. ..+...+.. .++| +++|+||+|+.+..... ..+...+.+..+
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 136 (164)
T smart00173 65 RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVS---TEEGKELARQWG---- 136 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEc---HHHHHHHHHHcC----
Confidence 8888999999999999987443222 222222222 2567 89999999987522111 122333333332
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++|. |+++++++|.+.+
T Consensus 137 -~~~~~~Sa~~~~-----------~i~~l~~~l~~~~ 161 (164)
T smart00173 137 -CPFLETSAKERV-----------NVDEAFYDLVREI 161 (164)
T ss_pred -CEEEEeecCCCC-----------CHHHHHHHHHHHH
Confidence 579999999873 8889998887543
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.9e-13 Score=133.30 Aligned_cols=113 Identities=24% Similarity=0.190 Sum_probs=76.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+.+++.. .... ....|+........+..++....+.+|||||..+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 61 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN--EFHS------------------SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC--CCCC------------------CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh
Confidence 6899999999999999999631 1111 0111332222111222233457889999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|......+++.+|++++|+|.++.-..+...-| .... ..++|++++.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 62 YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred HHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999899999999999999999875333333333 2221 2368999999999985
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=135.32 Aligned_cols=135 Identities=27% Similarity=0.239 Sum_probs=89.6
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh----hhHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA----DYIK 729 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~----~~~~ 729 (1021)
+.++|.+++|||||+++|++.... . ..|+ ..++.. .+|||||+. .+.+
T Consensus 3 v~liG~~~vGKSsL~~~l~~~~~~----------------~----~~t~-----~~~~~~---~~iDt~G~~~~~~~~~~ 54 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEEIL----------------Y----KKTQ-----AVEYND---GAIDTPGEYVENRRLYS 54 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCCccc----------------c----ccce-----eEEEcC---eeecCchhhhhhHHHHH
Confidence 568899999999999999974310 0 0111 122222 689999973 4455
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
.+...++.+|++++|+|++++...+..+++.. .+.| +|+|+||+|+.+..... ++..++++..++ .++
T Consensus 55 ~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p-~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~----~~~ 122 (142)
T TIGR02528 55 ALIVTAADADVIALVQSATDPESRFPPGFASI---FVKP-VIGLVTKIDLAEADVDI----ERAKELLETAGA----EPI 122 (142)
T ss_pred HHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCC-eEEEEEeeccCCcccCH----HHHHHHHHHcCC----CcE
Confidence 55556889999999999998776555443332 3456 88899999986522111 233344444432 368
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
+++||++| .++++++++|.
T Consensus 123 ~~~Sa~~~-----------~gi~~l~~~l~ 141 (142)
T TIGR02528 123 FEISSVDE-----------QGLEALVDYLN 141 (142)
T ss_pred EEEecCCC-----------CCHHHHHHHHh
Confidence 99999987 38888988774
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-13 Score=137.69 Aligned_cols=149 Identities=21% Similarity=0.219 Sum_probs=95.6
Q ss_pred eeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-CeEEEEEecCChhh-------h
Q psy5021 656 TIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-NKHYAHVDCPGHAD-------Y 727 (1021)
Q Consensus 656 ~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~~-------~ 727 (1021)
++|.+++|||||+++|++.... .....+.|.+.....+..+ +..+.||||||+.+ .
T Consensus 1 iiG~~~~GKStll~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK----------------VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc----------------ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 3688999999999999985321 1112344555555556666 88999999999743 2
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCC------c-HHHHHHHHHHHH----------cCCCeEEEEEeeccccchhhHHHHHH
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGP------M-PQTREHILLARQ----------VGVPNIVVFLNKADCVQDKELLDLVE 790 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~------~-~qt~e~l~~~~~----------~~ip~iIvviNK~Dl~~~~~~~~~~~ 790 (1021)
...+..++..+|++++|+|+++.. . .+...+...+.. .+.| +++|+||+|+........ ..
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~-~~ 142 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLNKIDLDDAEELEE-EL 142 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEEEchhcCchhHHHH-HH
Confidence 334556678899999999998762 1 222223322221 3677 899999999976322111 11
Q ss_pred HHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 791 MEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 791 ~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
....... ...+++++||+++ ++++++++.+..
T Consensus 143 --~~~~~~~-----~~~~~~~~Sa~~~-----------~gl~~l~~~l~~ 174 (176)
T cd01881 143 --VRELALE-----EGAEVVPISAKTE-----------EGLDELIRAIYE 174 (176)
T ss_pred --HHHHhcC-----CCCCEEEEehhhh-----------cCHHHHHHHHHh
Confidence 1111111 1356899999987 388889888754
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-13 Score=142.78 Aligned_cols=158 Identities=15% Similarity=0.035 Sum_probs=105.7
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
...+.+.++|..++|||||+++++... +......+.|.+..............+.+|||||+++|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~--------------f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--------------FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC--------------CCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhh
Confidence 556788899999999999999988643 111223333444433333233334578899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
..+..+++.+|++|+|+|.++....+. ..++..+.. .++| +++|+||+|+.+..... +++ .+.+..
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~----~~~-~~~~~~----- 145 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA----KQV-TFHRKK----- 145 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhhhhccCCH----HHH-HHHHhc-----
Confidence 888888899999999999998554333 233333332 3577 99999999986421111 122 222222
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.++++++||++|. |+++++++|.+.+
T Consensus 146 ~~~~~e~SAk~~~-----------~i~~~f~~l~~~~ 171 (219)
T PLN03071 146 NLQYYEISAKSNY-----------NFEKPFLYLARKL 171 (219)
T ss_pred CCEEEEcCCCCCC-----------CHHHHHHHHHHHH
Confidence 3578999999883 7888888887544
|
|
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-13 Score=134.52 Aligned_cols=116 Identities=12% Similarity=-0.016 Sum_probs=78.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee--eEEEeecccCceeEEEEc
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS--VSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~--~~~~~~~~~~~~~i~liD 83 (1021)
.+..+|+++|..|+|||||+++++... .. . .++. .|+.... ..+.+. +....++++|
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~-~---------~~~~-------~T~~~~~~~~~~~~~--~~~~~l~~~d 60 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FS-L---------NAYS-------PTIKPRYAVNTVEVY--GQEKYLILRE 60 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCC--CC-c---------ccCC-------CccCcceEEEEEEEC--CeEEEEEEEe
Confidence 467899999999999999999996321 11 0 0000 1222111 112222 3356789999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHh-hcCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQ-KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~-~~~~p~iiviNK~D~~ 142 (1021)
|+|...|......+++.+|++|+|+|+++.-..+.. ..++... ..++|+++|+||+|+.
T Consensus 61 ~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 61 VGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred cCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 999999988888889999999999999875322222 3333332 2379999999999985
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.5e-13 Score=133.97 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+.+++... ... .+ ..|+... ....+..++....+++|||||+.+
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~--f~~-----------~~-------~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNA--FPG-----------EY-------IPTVFDN-YSANVMVDGKPVNLGLWDTAGQED 61 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC-----------cC-------CCcceee-eEEEEEECCEEEEEEEEECCCchh
Confidence 68999999999999999996311 100 00 1122111 111122233467899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHH-Hh--hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQ-SQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~-~~--~~~~p~iiviNK~D~~~ 143 (1021)
|...+..+++.+|++|+|+|.++.-..+.. ..|.. +. ..++|+++|.||+|+..
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 62 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 998888899999999999999875444443 23432 22 23689999999999853
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-13 Score=140.15 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=76.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDtPG~ 87 (1021)
.+|+++|..|+|||||+++|+...-... . ..|+........+.. ++..+.+++|||||+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-----------~---------~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~ 62 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-----------S---------DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ 62 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-----------C---------CceeceEEEEEEEEECCCCEEEEEEEeCCcc
Confidence 5799999999999999999974221100 0 012222211111211 234578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh----hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~----~~~~p~iiviNK~D~~ 142 (1021)
..|......+++.+|++|+|+|.++........-| ..+. ....|++++.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 63 ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 99998888999999999999999875332222223 2222 2356788899999985
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-13 Score=135.53 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=98.4
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||++++.+...... ...+.+ +.....+..++ ..+.||||||+++|...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~--------------~~~t~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEK--------------YDPTIE---DFYRKEIEVDSSPSVLEILDTAGTEQFASM 65 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCchh---heEEEEEEECCEEEEEEEEECCCcccccch
Confidence 467889999999999999987431100 000001 11112232333 35678999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|.++... ....+++..+.. .++| +++|+||+|+........ .+...+.+..+
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~~~---~~~~~~~~~~~---- 137 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREVSS---AEGRALAEEWG---- 137 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCccCH---HHHHHHHHHhC----
Confidence 8899999999999999987543 223344333333 3677 899999999864221111 12223333332
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++||+++. ++.++++++.+.
T Consensus 138 -~~~~~~Sa~~~~-----------~v~~l~~~l~~~ 161 (163)
T cd04176 138 -CPFMETSAKSKT-----------MVNELFAEIVRQ 161 (163)
T ss_pred -CEEEEecCCCCC-----------CHHHHHHHHHHh
Confidence 478999999873 888999888753
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-13 Score=136.34 Aligned_cols=156 Identities=20% Similarity=0.172 Sum_probs=101.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|..++|||||++++...... ..+..+.|... .....+......+.+|||||+++|...+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--------------~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--------------DYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--------------CCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHh
Confidence 45678899999999999999864311 00111111111 1112222223467899999999999988
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
..+++.+|++|+|+|.++....+. .+++..+.. .++| +++|+||+|+.+.... . .++..++.+..+
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~~v-~--~~~~~~~a~~~~----- 138 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDLESQRQV-T--TEEGRNLAREFN----- 138 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhcCcc-C--HHHHHHHHHHhC-----
Confidence 899999999999999998665443 333333333 2577 9999999998642111 1 123334444433
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 139 ~~~~e~Sa~~~~-----------~v~~~f~~l~~~~ 163 (172)
T cd04141 139 CPFFETSAALRH-----------YIDDAFHGLVREI 163 (172)
T ss_pred CEEEEEecCCCC-----------CHHHHHHHHHHHH
Confidence 589999999873 8888888887543
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=153.29 Aligned_cols=155 Identities=18% Similarity=0.251 Sum_probs=103.7
Q ss_pred cccc-ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-CeEEEEEecCChh
Q psy5021 648 DLRS-NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-NKHYAHVDCPGHA 725 (1021)
Q Consensus 648 ~l~~-~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~ 725 (1021)
+|+. .-+|++|++|+|||||+++|++....+... .++|..+....+.+. +..+.|+|+||..
T Consensus 154 elk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~y----------------pfTTl~PnlG~v~~~~~~~~~laD~PGli 217 (424)
T PRK12297 154 ELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANY----------------HFTTLVPNLGVVETDDGRSFVMADIPGLI 217 (424)
T ss_pred eecccCcEEEEcCCCCCHHHHHHHHHcCCCccccC----------------CcceeceEEEEEEEeCCceEEEEECCCCc
Confidence 3444 378999999999999999999855333222 244666666666665 6789999999963
Q ss_pred h-------hHHHHHHHhhhCCEEEEEEECCCC----CcHHHHHHHHHHHH-----cCCCeEEEEEeeccccchhhHHHHH
Q psy5021 726 D-------YIKNMITGAAQMDGAILVCSAVDG----PMPQTREHILLARQ-----VGVPNIVVFLNKADCVQDKELLDLV 789 (1021)
Q Consensus 726 ~-------~~~~~~~~~~~aD~ailVvDa~~g----~~~qt~e~l~~~~~-----~~ip~iIvviNK~Dl~~~~~~~~~~ 789 (1021)
. .....+..+..+|++++|+|+++. +..+...+...+.. .+.| +|||+||+|+.+..+
T Consensus 218 ega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP-~IVV~NK~DL~~~~e----- 291 (424)
T PRK12297 218 EGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERP-QIVVANKMDLPEAEE----- 291 (424)
T ss_pred ccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCc-EEEEEeCCCCcCCHH-----
Confidence 2 234455667789999999999753 22222333333333 3667 888999999854221
Q ss_pred HHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 790 EMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 790 ~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+..+.+.++ .+++++||+++ +++++|+++|.+.+
T Consensus 292 --~l~~l~~~l~-----~~i~~iSA~tg-----------eGI~eL~~~L~~~l 326 (424)
T PRK12297 292 --NLEEFKEKLG-----PKVFPISALTG-----------QGLDELLYAVAELL 326 (424)
T ss_pred --HHHHHHHHhC-----CcEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 2222333332 36899999987 38888888887655
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=140.30 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=97.6
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|.+++|||||+++|....... ....+.|.. .......++ ..+.||||||+++|....
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~--------------~~~~t~~~~---~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 64 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVE--------------TYDPTIEDS---YRKQVVVDGQPCMLEVLDTAGQEEYTALR 64 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCc--------------cCCCchHhh---EEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 4578899999999999998643110 000111111 111122333 357889999999999988
Q ss_pred HHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+++.+|++|+|+|.++..... ..+++..+.. .++| +|+|+||+|+....... ..+..++.+.++
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~--- 137 (190)
T cd04144 65 DQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYEREVS---TEEGAALARRLG--- 137 (190)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccCccC---HHHHHHHHHHhC---
Confidence 89999999999999998754332 2334443332 2467 89999999986422111 112233333333
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.+.+.+
T Consensus 138 --~~~~e~SAk~~~-----------~v~~l~~~l~~~l 162 (190)
T cd04144 138 --CEFIEASAKTNV-----------NVERAFYTLVRAL 162 (190)
T ss_pred --CEEEEecCCCCC-----------CHHHHHHHHHHHH
Confidence 478999999874 7888888877543
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.9e-13 Score=137.07 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=77.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
|+|+++|..|+|||||+++|+...- .. .+ ..|+...... ....++....+++|||||+.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~--~~-----------~~-------~~t~~~~~~~-~i~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF--PQ-----------VY-------EPTVFENYVH-DIFVDGLHIELSLWDTAGQE 59 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CC-----------cc-------CCcceeeeEE-EEEECCEEEEEEEEECCCCh
Confidence 5799999999999999999963211 00 00 0122111111 11112335789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhh--cCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQK--YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~--~~~p~iiviNK~D~~~~ 144 (1021)
+|......+++.+|++|+|+|.++....+... .| ..+.. .+.|+++|+||+|+...
T Consensus 60 ~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 60 EFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred hccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 99887778889999999999998765444332 23 33332 37899999999998643
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-13 Score=129.33 Aligned_cols=97 Identities=22% Similarity=0.173 Sum_probs=70.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC--
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG-- 86 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG-- 86 (1021)
+.|.++|.+++|||||+++|........+ | . .+.|. =++|||||
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~K----------------------T---q--~i~~~-------~~~IDTPGEy 47 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK----------------------T---Q--AIEYY-------DNTIDTPGEY 47 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCc----------------------c---c--eeEec-------ccEEECChhh
Confidence 57899999999999999999532221111 1 1 11222 25799999
Q ss_pred --CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 --HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 --~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+..|..........||.+++|.||++..+.-.- ..+...+.|+|-|+||+|++
T Consensus 48 iE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 48 IENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred eeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCc
Confidence 467777788888899999999999986432221 34455689999999999997
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=121.72 Aligned_cols=81 Identities=28% Similarity=0.276 Sum_probs=70.6
Q ss_pred eEEEEEEEeecCCC-ceEEEEEEEeeEEecCCEEEeCCC---------ceeeEeceEEEeecCCeeccccccCCCEEEEe
Q psy5021 298 FVSLVFKIFHDPFL-GSLSFIRIYSGFIKVGDLVYNSTK---------KVKEKIFRILRMFANSKKDINDAHFGDIVVIV 367 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~-g~~~~~RV~sG~l~~gd~v~~~~~---------~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 367 (1021)
++++|||+.++|+. ++++|+|||||+|++||.|++... ...+++.+|+.++|.+..++++|.||||+++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 47899999999997 779999999999999999986321 24589999999999999999999999999999
Q ss_pred cCCccccCCee
Q psy5021 368 GLKESSTGDTL 378 (1021)
Q Consensus 368 gl~~~~~gdtl 378 (1021)
|+++..++.+.
T Consensus 81 gl~~~~~~~~t 91 (94)
T cd04090 81 GIDSSIVKTAT 91 (94)
T ss_pred CcchheeceEE
Confidence 99986655543
|
This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.8e-13 Score=142.10 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++++... ... .+ -.|+... ....+..++..+.++||||+|+.+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~--f~~-----------~y-------~pTi~d~-~~k~~~i~~~~~~l~I~Dt~G~~~ 60 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR--FEE-----------QY-------TPTIEDF-HRKLYSIRGEVYQLDILDTSGNHP 60 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC--CCC-----------CC-------CCChhHh-EEEEEEECCEEEEEEEEECCCChh
Confidence 58999999999999999997321 110 00 0111100 011122234468899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHHhh------------cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQSQK------------YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~~~------------~~~p~iiviNK~D~~ 142 (1021)
|......++..+|++|+|+|.++....+... +++++.. .++|+|+++||+|+.
T Consensus 61 ~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 61 FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred hhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 9888888889999999999998754333222 2233321 368999999999985
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=134.98 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=98.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
..++|..++|||||+++|.+.... ...+. .....++. ..+...+..+.+|||||++.+...+..
T Consensus 3 v~ivG~~~vGKTsl~~~l~~~~~~------------~~~~~-~~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 66 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSEEFP------------ENVPR-VLPEITIP---ADVTPERVPTTIVDTSSRPQDRANLAA 66 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCC------------ccCCC-cccceEee---eeecCCeEEEEEEeCCCchhhhHHHhh
Confidence 567899999999999999874311 00000 00011111 122234567889999999998888888
Q ss_pred HhhhCCEEEEEEECCCCCcHHHH-H-HHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQTR-E-HILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt~-e-~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
++..+|++++|+|++++...+.. + ++..++.. ++| +++|+||+|+.+..... ..+.++..+.+.+.. ..++
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~---~~~~ 141 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQA-GLEEEMLPIMNEFRE---IETC 141 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccchh-HHHHHHHHHHHHHhc---ccEE
Confidence 88999999999999876554442 2 33444432 567 99999999997632211 112223222222211 1268
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++||+++. |++++++.+...
T Consensus 142 ~e~Sa~~~~-----------~v~~lf~~~~~~ 162 (166)
T cd01893 142 VECSAKTLI-----------NVSEVFYYAQKA 162 (166)
T ss_pred EEecccccc-----------CHHHHHHHHHHH
Confidence 999999873 888898887653
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-13 Score=136.76 Aligned_cols=156 Identities=13% Similarity=0.177 Sum_probs=100.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
...+|..++|||||+.+++...- .....++.|... ....+..++ ..+.+|||+|+++|...+
T Consensus 3 i~vlG~~~vGKTsLi~~~~~~~f--------------~~~~~~T~g~~~--~~~~i~~~~~~~~l~iwDt~G~~~~~~~~ 66 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEGEF--------------DEDYIQTLGVNF--MEKTISIRGTEITFSIWDLGGQREFINML 66 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC--------------CCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCchhHHHhh
Confidence 45678899999999999987431 111122223333 223344444 467899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEeeccccch--hhHHHHHHHHHHHhhhccccCCCc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV--GVPNIVVFLNKADCVQD--KELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~--~ip~iIvviNK~Dl~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
..+++.||++++|+|+++....+. .+++..+... ..++ |+|+||+|+... ......+.++..++.+..+
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~----- 140 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK----- 140 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-----
Confidence 888999999999999987543222 3444444442 2232 567999999631 1111122344455555443
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++|. |++++++++.+.+
T Consensus 141 ~~~~e~SAk~g~-----------~v~~lf~~l~~~l 165 (182)
T cd04128 141 APLIFCSTSHSI-----------NVQKIFKIVLAKA 165 (182)
T ss_pred CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 578999999873 8888888887644
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-13 Score=140.87 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=101.8
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhhhHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~~~~~ 730 (1021)
+.++|.+++|||||+++|++... ..+....++.+.....+..+ ...+.||||||++.|...
T Consensus 3 i~ivG~~~vGKSsLi~~l~~~~~----------------~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l 66 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKEGF----------------GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM 66 (215)
T ss_pred EEEECcCCCCHHHHHHHHhcCCC----------------CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH
Confidence 56788999999999999987421 01111222334433334332 357789999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcC-----CCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQVG-----VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~~-----ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
...+++.+|++|+|+|+++....+ ..+++..+.... .+++|+|.||+|+.+.... ..++...+.+.++
T Consensus 67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v---~~~~~~~~~~~~~--- 140 (215)
T cd04109 67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV---KDDKHARFAQANG--- 140 (215)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc---CHHHHHHHHHHcC---
Confidence 888899999999999998754322 233444444321 1238899999999742211 1123334444443
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++| ++++++++.|.+.+
T Consensus 141 --~~~~~iSAktg-----------~gv~~lf~~l~~~l 165 (215)
T cd04109 141 --MESCLVSAKTG-----------DRVNLLFQQLAAEL 165 (215)
T ss_pred --CEEEEEECCCC-----------CCHHHHHHHHHHHH
Confidence 46889999988 38899999887654
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.6e-13 Score=137.15 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=76.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+++|+...-. . .+.+ .-|.+... ..+.. ++..+.+.+|||||+.+
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~--~-----------~~~~---t~~~~~~~--~~~~~--~~~~~~~~i~Dt~g~~~ 61 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFS--E-----------STKS---TIGVDFKI--KTVYI--ENKIIKLQIWDTNGQER 61 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C-----------CCCC---ceeeEEEE--EEEEE--CCEEEEEEEEECCCcHH
Confidence 6899999999999999999632110 0 0000 00111111 12222 23357889999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHh---hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~---~~~~p~iiviNK~D~~ 142 (1021)
|...+...++.+|++|+|+|+++.-.......|. ... ..+.|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 62 FRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 9999999999999999999998754333333332 222 2358999999999985
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=136.42 Aligned_cols=150 Identities=22% Similarity=0.196 Sum_probs=101.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+++.|++++|||||+++|+... ...+...++|.+.....+..++ ..+.+||+||+.++..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK----------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC----------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH
Confidence 356889999999999999999743 2233344666666665566666 6788999999999977
Q ss_pred HHHHHhhhCCEEEEEEECCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 730 NMITGAAQMDGAILVCSAVDG-------PMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
........++.++.++|.... ........+..+.. +.| +++++||+|+.... ...+....+...+.
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-----~~~~~~~~~~~~~~ 138 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-----LKTHVAFLFAKLNG 138 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch-----hhHHHHHHHhhccC
Confidence 766666777777777775543 21222223333322 777 89999999997632 22344444444443
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
.+++++||..+. ++.+++++|.
T Consensus 139 ----~~~~~~sa~~~~-----------gv~~~~~~l~ 160 (161)
T TIGR00231 139 ----EPIIPLSAETGK-----------NIDSAFKIVE 160 (161)
T ss_pred ----CceEEeecCCCC-----------CHHHHHHHhh
Confidence 468999999773 7888887763
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-13 Score=156.58 Aligned_cols=151 Identities=21% Similarity=0.242 Sum_probs=115.2
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh--
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY-- 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~-- 727 (1021)
+..+.+.+|++|+|||||+|+|++....+++.+ |+|++.+...++..++.+.++|+||...+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwp----------------GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWP----------------GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTA 65 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCC----------------CeeEEEEEEEEEecCceEEEEeCCCcCCCCC
Confidence 456789999999999999999999776665554 89999999999999999999999996544
Q ss_pred ----HHHHHHHh--hhCCEEEEEEECCCCCcHHHHHHH---HHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 728 ----IKNMITGA--AQMDGAILVCSAVDGPMPQTREHI---LLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 728 ----~~~~~~~~--~~aD~ailVvDa~~g~~~qt~e~l---~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
-+-+..++ ..+|+++.|+||++ .++++ .++.++|+| +|+++|++|..+. ..++-+.+++.+
T Consensus 66 ~S~DE~Var~~ll~~~~D~ivnVvDAtn-----LeRnLyltlQLlE~g~p-~ilaLNm~D~A~~----~Gi~ID~~~L~~ 135 (653)
T COG0370 66 YSEDEKVARDFLLEGKPDLIVNVVDATN-----LERNLYLTLQLLELGIP-MILALNMIDEAKK----RGIRIDIEKLSK 135 (653)
T ss_pred CCchHHHHHHHHhcCCCCEEEEEcccch-----HHHHHHHHHHHHHcCCC-eEEEeccHhhHHh----cCCcccHHHHHH
Confidence 22233333 35799999999985 33333 456678999 9999999997652 223333444555
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+| +|++++||++| +|++++++.+.+..
T Consensus 136 ~LG-----vPVv~tvA~~g-----------~G~~~l~~~i~~~~ 163 (653)
T COG0370 136 LLG-----VPVVPTVAKRG-----------EGLEELKRAIIELA 163 (653)
T ss_pred HhC-----CCEEEEEeecC-----------CCHHHHHHHHHHhc
Confidence 555 68999999987 38899999887643
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-13 Score=154.90 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=97.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH--
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI-- 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~-- 728 (1021)
.+.++++|.+|+|||||+|+|++....+ .....|+|.+.....+..++..+.+|||||+.++.
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~ai---------------vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ 267 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAI---------------VSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADF 267 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcc---------------cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhH
Confidence 3578899999999999999999843211 12235778888888888889999999999985432
Q ss_pred ------HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 729 ------KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 729 ------~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
..+..++..+|++++|+|++++...+.. ++..+...++| +|+|+||+|+... + ...+.+.++
T Consensus 268 ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~p-iIlV~NK~Dl~~~-~--------~~~~~~~~~- 335 (442)
T TIGR00450 268 VERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKP-FILVLNKIDLKIN-S--------LEFFVSSKV- 335 (442)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCC-EEEEEECccCCCc-c--------hhhhhhhcC-
Confidence 2345677899999999999987655444 55555556788 8999999998652 1 111222222
Q ss_pred CCCceEEEEecccc
Q psy5021 803 DGENTKIVIGSALL 816 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~ 816 (1021)
.+++.+||++
T Consensus 336 ----~~~~~vSak~ 345 (442)
T TIGR00450 336 ----LNSSNLSAKQ 345 (442)
T ss_pred ----CceEEEEEec
Confidence 3578899996
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-13 Score=152.67 Aligned_cols=130 Identities=29% Similarity=0.423 Sum_probs=110.3
Q ss_pred ccceeeeeeeeeccchhhhhhhcccccccccc-ccccccccCCchhhhhcCceEeeeEEEEe-----eCCeEEEEEecCC
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGG-EVRAFDTIDNAPEEKERGITISTSHVEYE-----SENKHYAHVDCPG 723 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~-----~~~~~i~liDtpG 723 (1021)
+...+|.+||-.||||+|++.|.....-..+. .-...+++|.+..|++||.++......+- ...+.++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 45688999999999999999998754322211 12234678999999999999988776553 2346789999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
|-+|...+...++.+|++++|||+.+|++-++...+..+.....| ++||+||+|..
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCc-EEEEEehhHHH
Confidence 999999999999999999999999999999999999999999999 99999999964
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.4e-13 Score=136.99 Aligned_cols=161 Identities=17% Similarity=0.080 Sum_probs=102.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+...++|..++|||||+.++....- ......+.|.... ....++.....+.+|||||+++|...
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f--------------~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l 67 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF--------------PKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRL 67 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC--------------CcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhh
Confidence 35677889999999999999987431 1111112221111 11122222345778999999999988
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH-HHH-HHHHH--cCCCeEEEEEeeccccchhhHHHHH---------HHHHHHhh
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTR-EHI-LLARQ--VGVPNIVVFLNKADCVQDKELLDLV---------EMEIRELL 797 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~-e~l-~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l 797 (1021)
+..+++.+|++|+|+|.++....+.. ..| ..+.. .++| +++|.||.|+.+.....+.+ .++...+.
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 146 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALA 146 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 88889999999999999875443332 222 22322 2577 99999999996532111111 12333344
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+..+ ..+++++||++|. |++++++.|.+.+
T Consensus 147 ~~~~----~~~~~e~SAk~g~-----------~v~e~f~~l~~~~ 176 (191)
T cd01875 147 KQIH----AVKYLECSALNQD-----------GVKEVFAEAVRAV 176 (191)
T ss_pred HHcC----CcEEEEeCCCCCC-----------CHHHHHHHHHHHH
Confidence 4433 2479999999873 8888888887644
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.3e-13 Score=134.03 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++|+...-..... .+ ........+.+ ++..+.+.+|||||+.+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~------~~-------------~~~~~~~~~~~--~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYV------PT-------------VFDNYSATVTV--DGKQVNLGLWDTAGQEE 60 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC------Cc-------------eeeeeEEEEEE--CCEEEEEEEEeCCCccc
Confidence 68999999999999999997432100000 00 01111111111 23367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHH-HHHh--hcCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVW-FQSQ--KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~-~~~~--~~~~p~iiviNK~D~~~~ 144 (1021)
|.......++.+|++++|+|+++....+. ...| .... ..++|+++++||+|+...
T Consensus 61 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 61 YDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred ccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 87777777889999999999987433222 2223 2222 236999999999998644
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-13 Score=133.57 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=101.5
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHH
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITG 734 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~ 734 (1021)
.++|..++|||||+++|.+.... ....++.|. ....+...+..+.+|||||+.+|...+..+
T Consensus 3 ~ivG~~~vGKTsli~~~~~~~~~--------------~~~~pt~g~----~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~ 64 (164)
T cd04162 3 LVLGLDGAGKTSLLHSLSSERSL--------------ESVVPTTGF----NSVAIPTQDAIMELLEIGGSQNLRKYWKRY 64 (164)
T ss_pred EEECCCCCCHHHHHHHHhcCCCc--------------ccccccCCc----ceEEEeeCCeEEEEEECCCCcchhHHHHHH
Confidence 56889999999999999974311 111122232 123455667889999999999999999999
Q ss_pred hhhCCEEEEEEECCCCCc-HHHHHHHHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHH--HHHhhhccccCCCceEE
Q psy5021 735 AAQMDGAILVCSAVDGPM-PQTREHILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEME--IRELLTEYDFDGENTKI 809 (1021)
Q Consensus 735 ~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~i 809 (1021)
++.+|++|+|+|+++... ...++++..+.. .++| +++|+||+|+.... ..+.+... +..+.+. ..+.+
T Consensus 65 ~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~-----~~~~~ 137 (164)
T cd04162 65 LSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLPAAR-SVQEIHKELELEPIARG-----RRWIL 137 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCC-CHHHHHHHhCChhhcCC-----CceEE
Confidence 999999999999987542 233344443332 3677 99999999986522 12222211 1222222 24678
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++||++.-+. ...++++++++.|.+
T Consensus 138 ~~~Sa~~~~s~-----~~~~~v~~~~~~~~~ 163 (164)
T cd04162 138 QGTSLDDDGSP-----SRMEAVKDLLSQLIN 163 (164)
T ss_pred EEeeecCCCCh-----hHHHHHHHHHHHHhc
Confidence 99999973211 123588888887754
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.7e-13 Score=151.41 Aligned_cols=114 Identities=17% Similarity=0.114 Sum_probs=77.6
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+..|+++|.+|+|||||+|+|........ ...+.|++.....+.+.. ...+.++||||.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~------------------~~~~tTld~~~~~i~l~~---~~~~~l~DTaG~ 255 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAA------------------DQLFATLDPTLRRIDVAD---VGETVLADTVGF 255 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeec------------------cCCCCCcCCceEEEEeCC---CCeEEEEecCcc
Confidence 45799999999999999999963221110 112345555544555551 237899999998
Q ss_pred CCc--------HHHHHHHhhccCeEEEEEeCCCCCchhHH----HHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VDF--------TIEVERSLRVLDGAVIIICASSGIQPQTE----TVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f--------~~~~~~~l~~~D~~ilvvda~~g~~~~t~----~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
... ...+...++.+|++|+|+|+++....... .++..+...++|+++|+||+|+.
T Consensus 256 ~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 256 IRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred cccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 442 12244556889999999999987543333 33444444579999999999985
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-13 Score=137.65 Aligned_cols=158 Identities=18% Similarity=0.128 Sum_probs=103.8
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
...+|..++|||||+.+++... +......+.|.+.. ....++.....+.+|||+|+++|...+..
T Consensus 4 ivv~G~~~vGKTsli~~~~~~~--------------f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~ 68 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYTSNK--------------FPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPL 68 (176)
T ss_pred EEEECCCCCcHHHHHHHHhcCC--------------CCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchh
Confidence 5678889999999999999743 11112222232221 11222222356789999999999988888
Q ss_pred HhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhH-------HHHHHHHHHHhhhcccc
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKEL-------LDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~-------~~~~~~~~~~~l~~~~~ 802 (1021)
+++.+|++|||+|.++....+.. .++..+... ++| +|+|.||+|+.+.... ..-..++..++.+..+.
T Consensus 69 ~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 69 SYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred hcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 99999999999999875554432 345544432 566 9999999999642110 00112344455554432
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++.+||++|. +++++++.+.+.+
T Consensus 148 ----~~~~E~SAk~~~-----------nV~~~F~~~~~~~ 172 (176)
T cd04133 148 ----AAYIECSSKTQQ-----------NVKAVFDAAIKVV 172 (176)
T ss_pred ----CEEEECCCCccc-----------CHHHHHHHHHHHH
Confidence 268999999884 8888988887643
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-13 Score=134.83 Aligned_cols=155 Identities=17% Similarity=0.081 Sum_probs=99.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
...++|..++|||||+.++....- .....++.|... ...+..++ ..+.+|||||+++|...
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f--------------~~~~~pt~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF--------------PSEYVPTVFDNY---AVTVMIGGEPYTLGLFDTAGQEDYDRL 65 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--------------CCCCCCceeeee---EEEEEECCEEEEEEEEECCCccchhhh
Confidence 456788999999999999997431 111111222111 11233344 56779999999999887
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH-H-HHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHhh
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTR-E-HILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIRELL 797 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~-e-~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l 797 (1021)
+..+++.+|++|+|+|.++....+.. + ++..+... ++| +|+|.||+|+.+..+..+.. .++..++.
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 77788999999999999875543332 3 33333332 567 99999999986532211111 11223333
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+..+ ...++++||++|. |++++++.+..
T Consensus 145 ~~~~----~~~~~e~SA~tg~-----------~v~~~f~~~~~ 172 (175)
T cd01874 145 RDLK----AVKYVECSALTQK-----------GLKNVFDEAIL 172 (175)
T ss_pred HHhC----CcEEEEecCCCCC-----------CHHHHHHHHHH
Confidence 3332 2579999999884 88888887754
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.3e-13 Score=132.51 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=97.3
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.+.|.+++|||||+++|++.... . ...+.|.+. ....+ .....+.+|||||+.++...+..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~------------~---~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELV------------T---TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcc------------c---ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHH
Confidence 356889999999999999974311 0 011122222 12222 13467899999999999888888
Q ss_pred HhhhCCEEEEEEECCCCCc-HHHHHHHHHH-H---HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC-CCce
Q psy5021 734 GAAQMDGAILVCSAVDGPM-PQTREHILLA-R---QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD-GENT 807 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~-~qt~e~l~~~-~---~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 807 (1021)
++..+|++++|+|+++... .....++... . ..+.| +++|+||+|+..... .+ ++...+....+. ..+.
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~~ 137 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGALT-AE----EITRRFKLKKYCSDRDW 137 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECcccccCcC-HH----HHHHHcCCcccCCCCcE
Confidence 8999999999999987542 2223333222 1 14677 999999999864211 12 222222111111 1246
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++++||++| +|++++++.|.+
T Consensus 138 ~~~~~Sa~~~-----------~gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQPCSAVTG-----------EGLAEAFRKLAS 159 (160)
T ss_pred EEEecccccC-----------CChHHHHHHHhc
Confidence 7999999987 488999988854
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.8e-12 Score=123.45 Aligned_cols=119 Identities=18% Similarity=0.106 Sum_probs=88.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.-+.-.+.++|..++|||||+.++.+..-- ...+-||.....+..+...+..+.+.||||
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd--------------------~~YqATIGiDFlskt~~l~d~~vrLQlWDT 78 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFD--------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDT 78 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhc--------------------ccccceeeeEEEEEEEEEcCcEEEEEEEec
Confidence 344568999999999999999999864321 122336665555554444555789999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHHhhcC----CCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQSQKYK----VPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~~~~~----~p~iiviNK~D~~~ 143 (1021)
+|++.|...+.+++|.+..||+|.|.++.-.. +|...++.++..+ +-+++|.||.|+..
T Consensus 79 AGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 79 AGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred ccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 99999999999999999999999999976444 4444445555443 33566789999964
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=5e-13 Score=138.70 Aligned_cols=157 Identities=13% Similarity=0.119 Sum_probs=100.6
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|.+++|||||+++|++..... .+.....|.+.... .+..++ ..+.+|||||+++|....
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~~~~~-------------~~~~~t~~~~~~~~--~~~~~~~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHRFLV-------------GPYQNTIGAAFVAK--RMVVGERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCC-------------cCcccceeeEEEEE--EEEECCEEEEEEEEECCCchhhhhhh
Confidence 5678899999999999999743110 01112223323222 233444 346699999999998877
Q ss_pred HHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHH-HHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV--GVPNIVVFLNKADCVQDKELLDL-VEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++++|+|.++....+ ...++..+... ++| +++|+||+|+.+....... ...++.++...++ .
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-----~ 141 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-----A 141 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccccccccccCccCHHHHHHHHHHcC-----C
Confidence 77788999999999998754322 23444444443 567 9999999998642111111 1123444444333 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++++||+++. +++.|++.|.+.+
T Consensus 142 ~~~~~Sa~~~~-----------gv~~l~~~i~~~~ 165 (193)
T cd04118 142 QHFETSSKTGQ-----------NVDELFQKVAEDF 165 (193)
T ss_pred eEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 68999999873 7888888887643
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-13 Score=162.63 Aligned_cols=145 Identities=21% Similarity=0.241 Sum_probs=103.9
Q ss_pred eeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH------H
Q psy5021 658 GHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN------M 731 (1021)
Q Consensus 658 g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~------~ 731 (1021)
|.+|+|||||+|+|++... ......|+|++.....+++++..+.+|||||+.++... +
T Consensus 1 G~pNvGKSSL~N~Ltg~~~----------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ----------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC----------------eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHH
Confidence 6799999999999997432 12234688999888888888889999999999887432 2
Q ss_pred HHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 732 ITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 732 ~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
..++ ..+|++++|+|+++. .+..+....+...++| +++|+||+|+.+.... ..+.+.+.+.++ +++
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~i----~~d~~~L~~~lg-----~pv 132 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIP-MILALNLVDEAEKKGI----RIDEEKLEERLG-----VPV 132 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCC-EEEEEehhHHHHhCCC----hhhHHHHHHHcC-----CCE
Confidence 2222 478999999999873 2333444455667888 8999999998642211 122333444444 579
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++||++| +|++++++.+.+.
T Consensus 133 v~tSA~tg-----------~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 133 VPTSATEG-----------RGIERLKDAIRKA 153 (591)
T ss_pred EEEECCCC-----------CCHHHHHHHHHHH
Confidence 99999987 3889999988763
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.5e-13 Score=139.37 Aligned_cols=157 Identities=16% Similarity=0.096 Sum_probs=103.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|++.... ......|.+.......+......+.||||||+++|...
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVE---------------DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC---------------CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHH
Confidence 456788999999999999999874311 11122233333333333333356789999999999998
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH-HHHH-HHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTR-EHIL-LARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~-~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
+..+++.+|++|+|+|+++....+.. +.|. .+.. .+.| +++|+||+|+....... .++...+....+
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~i~---~~~~~~~~~~~~--- 151 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRESERDVS---REEGMALAKEHG--- 151 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCccC---HHHHHHHHHHcC---
Confidence 88999999999999999875433332 2232 2222 2456 88899999987522111 122223333332
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||+++. +++++++.|.+.+
T Consensus 152 --~~~~e~SAk~~~-----------~v~~l~~~l~~~~ 176 (211)
T PLN03118 152 --CLFLECSAKTRE-----------NVEQCFEELALKI 176 (211)
T ss_pred --CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 578999999873 8888888887644
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-13 Score=140.06 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=103.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|..++|||||+++|++.... . +....+..+.....+..++ ..+.||||||+++|..
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~--------------~--~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~ 76 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFC--------------L--ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA 76 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--------------C--CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 57888999999999999999874311 1 1112223333333344433 4778999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++|+|+|.++....+. ..++..+... ++| +++|+||+|+.+...... ++...+....
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~~---~~~~~l~~~~----- 147 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLNHLRSVAE---EDGQALAEKE----- 147 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhcccccCCCH---HHHHHHHHHc-----
Confidence 88888999999999999987543333 3344444443 577 899999999864221111 1222232222
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.++++++||++|. +++++++.|...+
T Consensus 148 ~~~~~e~SA~~g~-----------~v~~lf~~l~~~i 173 (216)
T PLN03110 148 GLSFLETSALEAT-----------NVEKAFQTILLEI 173 (216)
T ss_pred CCEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 3589999999884 7777777776544
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=133.21 Aligned_cols=157 Identities=18% Similarity=0.111 Sum_probs=99.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
...++|..++|||||+.+++...-. .......+-.. .....++.....+.+|||||+++|...+.
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f~--------------~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAFP--------------GEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRP 67 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------------CcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhh
Confidence 4567889999999999999874310 00011111111 01112222235678999999999988888
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHH-H-HHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHhhhc
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTR-E-HILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIRELLTE 799 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~-e-~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l~~ 799 (1021)
.+++.+|++|+|+|.++....+.. + ++..+... ++| +|+|.||+|+.+.....+.+ .++..++.+.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 146 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 146 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 888999999999999875443332 2 33333332 467 99999999996422111111 1233344444
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++ ..+++++||++|. |++++++.+.+
T Consensus 147 ~~----~~~~~e~Sa~~~~-----------~i~~~f~~l~~ 172 (174)
T cd01871 147 IG----AVKYLECSALTQK-----------GLKTVFDEAIR 172 (174)
T ss_pred cC----CcEEEEecccccC-----------CHHHHHHHHHH
Confidence 43 2479999999884 88999988764
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=133.15 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=103.7
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+....++.|.+++|||||+++|.+.... ......|.++ ..++..+..+.+||+||+.++.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~---------------~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~~ 72 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS---------------HITPTQGFNI----KTVQSDGFKLNVWDIGGQRAIR 72 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc---------------ccCCCCCcce----EEEEECCEEEEEEECCCCHHHH
Confidence 44678999999999999999999874210 0112223322 2344567889999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH----HHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLA----RQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~----~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+...+..+|++++|+|+.+... ......+... ...++| +++++||+|+.+... .+. +.+.+....+.
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~~----i~~~l~~~~~~ 146 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATAAP-AEE----IAEALNLHDLR 146 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccCCC-HHH----HHHHcCCcccC
Confidence 888888899999999999986321 2223233222 234678 889999999865221 122 22222222222
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
....+++++||++| +|+++++++|.+
T Consensus 147 ~~~~~~~~~Sa~~~-----------~gi~~~~~~l~~ 172 (173)
T cd04155 147 DRTWHIQACSAKTG-----------EGLQEGMNWVCK 172 (173)
T ss_pred CCeEEEEEeECCCC-----------CCHHHHHHHHhc
Confidence 22346789999987 489999998854
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-13 Score=139.11 Aligned_cols=155 Identities=17% Similarity=0.035 Sum_probs=93.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH--
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI-- 728 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~-- 728 (1021)
.+.++|.+++|||||++++++..... +....++.+.....+..++ ..+.||||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~----------------~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~ 65 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE----------------EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc----------------ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc
Confidence 45788999999999999999743110 1111111122112233344 467799999976542
Q ss_pred ------HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH------cCCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 729 ------KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ------VGVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 729 ------~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
.....+++.+|++|+|+|+++....+. ..++..+.. .++| +|+|+||+|+....... .+++..
T Consensus 66 ~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl~~~~~~~---~~~~~~ 141 (198)
T cd04142 66 AGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKRDQQRHRFAP---RHVLSV 141 (198)
T ss_pred chhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECcccccccccc---HHHHHH
Confidence 123345688999999999987543332 222332222 3567 99999999996521111 112333
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.++. .+++++++||++|. |++.|++.+...+
T Consensus 142 ~~~~~----~~~~~~e~Sak~g~-----------~v~~lf~~i~~~~ 173 (198)
T cd04142 142 LVRKS----WKCGYLECSAKYNW-----------HILLLFKELLISA 173 (198)
T ss_pred HHHHh----cCCcEEEecCCCCC-----------CHHHHHHHHHHHh
Confidence 32221 13689999999884 8888888887543
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.3e-13 Score=132.19 Aligned_cols=153 Identities=22% Similarity=0.158 Sum_probs=99.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
...++|.+++|||||+++|+...... .....++.......+...+ ..+.+||+||++.|...
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE----------------KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC----------------CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHh
Confidence 45788999999999999999743110 0111122222222233333 46789999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..++..+|++++|+|++++...+. ..++..+... ++| +++++||+|+....... .+++.++.+..+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~~~---~~~~~~~~~~~~----- 136 (162)
T cd04123 66 GPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRVVS---KSEAEEYAKSVG----- 136 (162)
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCC---HHHHHHHHHHcC-----
Confidence 8888899999999999987654332 2333333322 466 89999999987522110 122333333333
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++|++++ .++++++++|.+.
T Consensus 137 ~~~~~~s~~~~-----------~gi~~~~~~l~~~ 160 (162)
T cd04123 137 AKHFETSAKTG-----------KGIEELFLSLAKR 160 (162)
T ss_pred CEEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 46899999987 3889999988653
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.4e-13 Score=135.03 Aligned_cols=156 Identities=21% Similarity=0.142 Sum_probs=101.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
...+.++|..++|||||++++...... ...++.|..+ ..++..+..+.+|||||+++|...
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~---------------~~~~T~~~~~----~~~~~~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV---------------TTIPTIGFNV----ETVEYKNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc---------------ccCCccccce----EEEEECCEEEEEEECCCCHhHHHH
Confidence 356788899999999999999753210 0112223222 234456788999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++|+|+|+++.. +....+.+..... ...| ++||+||.|+.+... .+ ++...+....+...
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~l~~~~~~~~ 151 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNAMS-TT----EVTEKLGLHSVRQR 151 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCCC-HH----HHHHHhCCCcccCC
Confidence 999999999999999998632 2223333332221 2455 999999999865211 11 22222221112223
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++.++++||++|. |+++++++|.+.+
T Consensus 152 ~~~~~~~Sa~tg~-----------gv~e~~~~l~~~i 177 (182)
T PTZ00133 152 NWYIQGCCATTAQ-----------GLYEGLDWLSANI 177 (182)
T ss_pred cEEEEeeeCCCCC-----------CHHHHHHHHHHHH
Confidence 4567899999883 8899999887643
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=131.43 Aligned_cols=152 Identities=20% Similarity=0.159 Sum_probs=99.8
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|..++|||||+++++...- ...... .+..+.....+..++ ..+.+|||||+++|...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~--------------~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF--------------HSSHIS--TIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--------------CCCCCC--ceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhh
Confidence 356889999999999999986431 111112 222333333344444 46789999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..+++.+|++++|+|.++.... ....++..+... ++| ++++.||+|+.+...... ++...+.+..+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v~~---~~~~~~~~~~~----- 136 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQVGD---EQGNKLAKEYG----- 136 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCCH---HHHHHHHHHcC-----
Confidence 88889999999999998874332 223333333332 456 899999999865221111 23333333333
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+++++||++|. |++++++.|.+
T Consensus 137 ~~~~e~Sa~~~~-----------~v~~~f~~l~~ 159 (161)
T cd04117 137 MDFFETSACTNS-----------NIKESFTRLTE 159 (161)
T ss_pred CEEEEEeCCCCC-----------CHHHHHHHHHh
Confidence 578999999873 88899988864
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=131.80 Aligned_cols=156 Identities=16% Similarity=0.125 Sum_probs=99.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe-eCCeEEEEEecCChhhhHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE-SENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~-~~~~~i~liDtpG~~~~~~~~ 731 (1021)
.+.++|.+++|||||+++|...... .........|.........+. .....+.+|||||++.|...+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~------------~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 69 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAV------------FPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMV 69 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC------------cCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHH
Confidence 3567889999999999999853100 001111222333322333332 234678899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
...+..+|++++|+|.++..... ...++..+... ++| +|+|+||+|+.+..+... .+...+....+ .+
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~ 140 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEVTD---AQAQAFAQANQ-----LK 140 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCCH---HHHHHHHHHcC-----Ce
Confidence 88889999999999998743322 23333333333 577 899999999865321111 11122222222 57
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++||+++ .+++++++.|.+
T Consensus 141 ~~~~Sa~~~-----------~gi~~l~~~l~~ 161 (164)
T cd04101 141 FFKTSALRG-----------VGYEEPFESLAR 161 (164)
T ss_pred EEEEeCCCC-----------CChHHHHHHHHH
Confidence 899999987 388889988865
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=129.82 Aligned_cols=152 Identities=20% Similarity=0.136 Sum_probs=105.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
-.-.+|-+++|||+|+-++..+. +....-...|+ +.....++.++ ..+.+|||+|+++|...
T Consensus 14 kvlliGDs~vGKt~~l~rf~d~~--------------f~~~~~sTiGI--DFk~kti~l~g~~i~lQiWDtaGQerf~ti 77 (207)
T KOG0078|consen 14 KLLLIGDSGVGKTCLLLRFSDDS--------------FNTSFISTIGI--DFKIKTIELDGKKIKLQIWDTAGQERFRTI 77 (207)
T ss_pred EEEEECCCCCchhHhhhhhhhcc--------------CcCCccceEEE--EEEEEEEEeCCeEEEEEEEEcccchhHHHH
Confidence 34566779999999999998754 22222233344 44444455554 45678999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..|++.|++++||+|.++... ...+.++.....+ +++ +++|.||+|+.... .--.++-+++...+|
T Consensus 78 ~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~~R---~V~~e~ge~lA~e~G----- 148 (207)
T KOG0078|consen 78 TTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVV-KILVGNKCDLEEKR---QVSKERGEALAREYG----- 148 (207)
T ss_pred HHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCc-EEEeeccccccccc---cccHHHHHHHHHHhC-----
Confidence 9999999999999999887433 3334444444444 677 88899999987522 112344556666676
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++|+.+||++|. |+.+.+-.|.+
T Consensus 149 ~~F~EtSAk~~~-----------NI~eaF~~La~ 171 (207)
T KOG0078|consen 149 IKFFETSAKTNF-----------NIEEAFLSLAR 171 (207)
T ss_pred CeEEEccccCCC-----------CHHHHHHHHHH
Confidence 589999999985 66665555554
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.8e-13 Score=136.25 Aligned_cols=159 Identities=15% Similarity=0.046 Sum_probs=100.3
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|..++|||||++++++..... ....+.+... .....++.....+.||||||+++|...+..
T Consensus 3 ivivG~~~vGKTsli~~~~~~~~~~--------------~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~ 67 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRGYFPQ--------------VYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSL 67 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--------------ccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccc
Confidence 4678899999999999998743110 0111111111 111222222356889999999999777777
Q ss_pred HhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHH---------HHHHHHHhhhcc
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDL---------VEMEIRELLTEY 800 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~---------~~~~~~~~l~~~ 800 (1021)
+++.+|++++|+|.++....+.. .++..+... +.| +|+|.||+|+.+.....+. ..++...+.+..
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 146 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRI 146 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 88999999999999875444333 234444432 567 9999999999753221110 011223333333
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+ .++++++||++|. |+++++++|.+.+.
T Consensus 147 ~----~~~~~e~SAk~~~-----------~v~e~f~~l~~~~~ 174 (189)
T cd04134 147 N----ALRYLECSAKLNR-----------GVNEAFTEAARVAL 174 (189)
T ss_pred C----CCEEEEccCCcCC-----------CHHHHHHHHHHHHh
Confidence 2 2578999999873 88899988876543
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=132.63 Aligned_cols=113 Identities=17% Similarity=0.100 Sum_probs=75.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee-eEEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS-VSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
++|+++|+.++|||||+++|+...-.-. + -.|+.... ..+.+ ++....+.+|||||+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~-------------~-------~~t~~~~~~~~~~~--~~~~~~l~i~Dt~G~ 59 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV-------------Y-------VPTVFENYVADIEV--DGKQVELALWDTAGQ 59 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC-------------C-------CCccccceEEEEEE--CCEEEEEEEEeCCCc
Confidence 5799999999999999999974221100 0 00111111 12222 233567899999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHH-HHhh--cCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWF-QSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~-~~~~--~~~p~iiviNK~D~~~ 143 (1021)
.+|......+++.+|++++|+|.++....... ..|. .+.. .++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 60 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 99887777788999999999999864322221 2232 2222 4799999999999853
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.9e-13 Score=158.21 Aligned_cols=104 Identities=21% Similarity=0.238 Sum_probs=77.2
Q ss_pred eCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHH-
Q psy5021 15 AHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIE- 93 (1021)
Q Consensus 15 G~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~- 93 (1021)
|.+|+|||||+|+|.... ...+ ..+|+|++.....+.++ ++.+++|||||+.+|...
T Consensus 1 G~pNvGKSSL~N~Ltg~~---~~v~---------------n~pG~Tv~~~~~~i~~~----~~~i~lvDtPG~~~~~~~s 58 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN---QTVG---------------NWPGVTVEKKEGKLGFQ----GEDIEIVDLPGIYSLTTFS 58 (591)
T ss_pred CCCCCCHHHHHHHHhCCC---Ceec---------------CCCCeEEEEEEEEEEEC----CeEEEEEECCCccccCccc
Confidence 789999999999995321 1111 23578888887777787 778999999999888543
Q ss_pred ----HH-HHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 94 ----VE-RSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 94 ----~~-~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+. .++ ..+|++++|+|+++. ........++.+.++|+++++||+|+.
T Consensus 59 ~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 59 LEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred hHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 22 222 468999999999873 233444556667899999999999974
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=130.30 Aligned_cols=152 Identities=23% Similarity=0.225 Sum_probs=102.7
Q ss_pred eeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-CeEEEEEecCChhhhH-------
Q psy5021 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-NKHYAHVDCPGHADYI------- 728 (1021)
Q Consensus 657 ~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~~~~------- 728 (1021)
+|.+++|||||+++|++..... .....+.|.......+... ...+.+|||||+.++.
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~ 66 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAI---------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRERE 66 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccc---------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHH
Confidence 6889999999999999753221 1122344555555445444 6789999999987653
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
..+...++.+|++++|+|+..........+.......+.| +++++||+|+........... . ..... ......+
T Consensus 67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~-~-~~~~~---~~~~~~~ 140 (163)
T cd00880 67 ELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDLLPEEEEEELLE-L-RLLIL---LLLLGLP 140 (163)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEccccCChhhHHHHHH-H-HHhhc---ccccCCc
Confidence 3445567899999999999987776666556666667888 899999999986332211111 0 11111 1123468
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++||.++. ++..++++|.+
T Consensus 141 ~~~~sa~~~~-----------~v~~l~~~l~~ 161 (163)
T cd00880 141 VIAVSALTGE-----------GIDELREALIE 161 (163)
T ss_pred eEEEeeeccC-----------CHHHHHHHHHh
Confidence 9999999773 78888888765
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.3e-13 Score=133.38 Aligned_cols=155 Identities=17% Similarity=0.118 Sum_probs=98.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
....+|.+++|||||++++.+..... ......+... .....+......+.+|||||+++|...+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 67 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIE--------------SYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--------------ccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhH
Confidence 46788999999999999998643110 0111111111 11122222235678999999999999988
Q ss_pred HHhhhCCEEEEEEECCCCCcHHH-HHHHHHHH----HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQT-REHILLAR----QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~----~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
.++..+|++++|+|.++....+. ..+..... ..++| +++++||+|+.+.... ..++...+.+.++ .+
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~---~~~~~~~~~~~~~----~~ 139 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQV---SREDGVSLSQQWG----NV 139 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCcc---CHHHHHHHHHHcC----Cc
Confidence 89999999999999987543222 22222222 23678 8889999998652211 1122233333333 25
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||+++. +++++++++...
T Consensus 140 ~~~~~SA~~~~-----------~i~~~f~~i~~~ 162 (168)
T cd04177 140 PFYETSARKRT-----------NVDEVFIDLVRQ 162 (168)
T ss_pred eEEEeeCCCCC-----------CHHHHHHHHHHH
Confidence 79999999873 788888888653
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=140.51 Aligned_cols=157 Identities=19% Similarity=0.101 Sum_probs=100.1
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|..++|||||++++++..... ....+.+ +.....+..++ ..+.||||+|+++|...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~--------------~y~pTi~---d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~ 64 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE--------------QYTPTIE---DFHRKLYSIRGEVYQLDILDTSGNHPFPAM 64 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCChh---HhEEEEEEECCEEEEEEEEECCCChhhhHH
Confidence 35678999999999999998643110 0011111 22222333344 56789999999999877
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH------------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ------------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~------------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
...++..+|++|+|+|.++....+. ..++..+.. .++| +|+|+||+|+..... ...+++.+++
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~~~~~---v~~~ei~~~~ 140 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRDFPRE---VQRDEVEQLV 140 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccchhccc---cCHHHHHHHH
Confidence 7777889999999999987543222 223333322 2567 999999999864211 1112344433
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
... ..+.++++||++|. |+++++++|.+....|
T Consensus 141 ~~~----~~~~~~evSAktg~-----------gI~elf~~L~~~~~~p 173 (247)
T cd04143 141 GGD----ENCAYFEVSAKKNS-----------NLDEMFRALFSLAKLP 173 (247)
T ss_pred Hhc----CCCEEEEEeCCCCC-----------CHHHHHHHHHHHhccc
Confidence 221 13579999999873 8899999998755434
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-12 Score=129.62 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=79.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-..|+++|..++|||||+.+++...- . .++ ..|+.... ......++....+.+|||+|.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~-----------~~~-------~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~ 63 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--P-----------ENY-------VPTVFENY-TASFEIDTQRIELSLWDTSGS 63 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--C-----------Ccc-------CCceeeee-EEEEEECCEEEEEEEEECCCc
Confidence 45799999999999999999963211 0 011 11332211 111222344678999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHH-HHhh--cCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWF-QSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~-~~~~--~~~p~iiviNK~D~~ 142 (1021)
..|......+++.+|++|+|+|.++....+.. ..|. .+.. .+.|+++|.||+|+.
T Consensus 64 e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 64 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 99998888899999999999999886554443 4443 3322 368999999999984
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-12 Score=122.79 Aligned_cols=155 Identities=20% Similarity=0.163 Sum_probs=110.8
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHAD 726 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~ 726 (1021)
.++..++.++|..++||||++.++.............. +..+. .|-.|+...+..++..+ ..+.|+|||||++
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~----~s~k~--kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R 80 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASS----VSGKG--KRPTTVAMDFGSIELDEDTGVHLFGTPGQER 80 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccc----ccccc--ccceeEeecccceEEcCcceEEEecCCCcHH
Confidence 35667888999999999999999987543222111100 11111 23356666666666655 7899999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC-CCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVG-VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~-ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
|--+|...++.++++|++||++.+.....++.+....... +| ++|++||.|+.+... - ++++++++.-. .
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a~p-p----e~i~e~l~~~~---~ 151 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAINKQDLFDALP-P----EKIREALKLEL---L 151 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCC-EEEEeeccccCCCCC-H----HHHHHHHHhcc---C
Confidence 9999999999999999999999987776677788888877 67 999999999976211 1 23344443221 2
Q ss_pred ceEEEEeccccc
Q psy5021 806 NTKIVIGSALLA 817 (1021)
Q Consensus 806 ~~~ii~iSa~~~ 817 (1021)
+.++|+++|..+
T Consensus 152 ~~~vi~~~a~e~ 163 (187)
T COG2229 152 SVPVIEIDATEG 163 (187)
T ss_pred CCceeeeecccc
Confidence 468899999854
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-12 Score=133.34 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=79.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+++|..++|||||+.+++... ... ++ ..|+.... ......++....++||||+|..
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~--F~~-----------~y-------~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e 72 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDC--YPE-----------TY-------VPTVFENY-TAGLETEEQRVELSLWDTSGSP 72 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCC--CCC-----------Cc-------CCceeeee-EEEEEECCEEEEEEEEeCCCch
Confidence 368999999999999999986321 100 01 11332211 1122223456889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHH-HHh--hcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWF-QSQ--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~-~~~--~~~~p~iiviNK~D~~ 142 (1021)
+|......+++.+|++|+|+|.++....+. ...|. .+. ..+.|+++|.||+|+.
T Consensus 73 ~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 73 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred hhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999888899999999999999998655543 23443 333 2368999999999984
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=131.79 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=75.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeee-EEEeecccCceeEEEEcCCCCCC
Q psy5021 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV-SIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 11 i~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~-~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
|+|+|..|+|||||+++++...- .. .+. .|+..... .+.+ ++..+.+.+|||||+.+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~-----------~~~-------~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~ 58 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PE-----------DYV-------PTVFENYSADVEV--DGKPVELGLWDTAGQED 58 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CC-----------CCC-------CcEEeeeeEEEEE--CCEEEEEEEEECCCCcc
Confidence 58999999999999999974221 10 000 11211111 1122 23457899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHh--hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~--~~~~p~iiviNK~D~~~ 143 (1021)
|.......++.+|++|+|+|.++.-..+.. ..| .... ..++|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 59 YDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred cchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 988888889999999999999875333222 223 2332 24799999999999853
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=136.29 Aligned_cols=155 Identities=21% Similarity=0.130 Sum_probs=97.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|..++|||||+++++...... .....+.+.....+...+ ..+.||||||+.+|....
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 64 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEP-----------------KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMR 64 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCc-----------------cCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHH
Confidence 4578999999999999998743110 000111112222344444 567899999999998877
Q ss_pred HHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
..++..+|++|+|+|+++....+ ...++..+.. .++| +|+++||+|+.+...... ..+..+... ..+ .
T Consensus 65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~~v~--~~~~~~~~~-~~~---~ 137 (198)
T cd04147 65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEEERQVP--AKDALSTVE-LDW---N 137 (198)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEcccccccccccc--HHHHHHHHH-hhc---C
Confidence 78889999999999998754322 2222222222 3677 899999999865211111 111111111 111 2
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.+++++||++|. |+++++++|.+.+.
T Consensus 138 ~~~~~~Sa~~g~-----------gv~~l~~~l~~~~~ 163 (198)
T cd04147 138 CGFVETSAKDNE-----------NVLEVFKELLRQAN 163 (198)
T ss_pred CcEEEecCCCCC-----------CHHHHHHHHHHHhh
Confidence 468999999883 88999999887553
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.8e-13 Score=151.37 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=99.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhhh----
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHADY---- 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~~---- 727 (1021)
.++++|.+|+|||||+|+|++..... ....+.|.+.....+...+ ..+.||||||+.+.
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~~~v----------------~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~ 262 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEARVYA----------------ADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHD 262 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceee----------------ccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHH
Confidence 56789999999999999999854221 1122456666666666555 38899999997432
Q ss_pred ----HHHHHHHhhhCCEEEEEEECCCCCcHHHH----HHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 728 ----IKNMITGAAQMDGAILVCSAVDGPMPQTR----EHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 728 ----~~~~~~~~~~aD~ailVvDa~~g~~~qt~----e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
...+...+..||++|+|+|+++....... +.+..+...++| +|+|+||+|+.+... ... ... .
T Consensus 263 lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL~~~~~--~~~----~~~--~ 333 (426)
T PRK11058 263 LVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDMLDDFE--PRI----DRD--E 333 (426)
T ss_pred HHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcccCCCchh--HHH----HHH--h
Confidence 23355667899999999999986543332 233333334677 889999999975211 111 100 1
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.++ ..++++||++| .|++.|+++|.+.+.
T Consensus 334 ~~~----~~~v~ISAktG-----------~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 334 ENK----PIRVWLSAQTG-----------AGIPLLFQALTERLS 362 (426)
T ss_pred cCC----CceEEEeCCCC-----------CCHHHHHHHHHHHhh
Confidence 121 12578999988 389999999987653
|
|
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=133.04 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=97.9
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHHH
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~ 732 (1021)
.++|..++|||||++++.+..... +....+ .+.....+..++ ..+.+|||||+++|.....
T Consensus 2 ~i~G~~~vGKTsli~~~~~~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 64 (174)
T smart00174 2 VVVGDGAVGKTCLLISYTTNAFPE----------------DYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDYDRLRP 64 (174)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCC----------------CCCCcE-EeeeeEEEEECCEEEEEEEEECCCCcccchhch
Confidence 467889999999999998743110 000011 111111223333 3578999999999988777
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHhhhc
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIRELLTE 799 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l~~ 799 (1021)
..++.+|++|+|+|.++....+.. .++..+... ++| +|+|+||+|+.......+.+ .++...+.+.
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 788999999999999874332222 233333332 677 99999999987522211111 1233445555
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+. .+++++||++|. |++++++.+.+.
T Consensus 144 ~~~----~~~~e~Sa~~~~-----------~v~~lf~~l~~~ 170 (174)
T smart00174 144 IGA----VKYLECSALTQE-----------GVREVFEEAIRA 170 (174)
T ss_pred cCC----cEEEEecCCCCC-----------CHHHHHHHHHHH
Confidence 542 378999999873 889999888653
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >smart00838 EFG_C Elongation factor G C-terminus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-13 Score=120.81 Aligned_cols=72 Identities=46% Similarity=0.818 Sum_probs=67.8
Q ss_pred eeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 591 ILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 591 llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
||||||+++|.||++++|+|+++|++|||.|.+++..++.+.|+|.+|++++++|.++|+++|.|.+.+...
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~ 72 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATWSME 72 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEE
Confidence 689999999999999999999999999999999998777899999999999999999999999999877543
|
This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=128.12 Aligned_cols=112 Identities=22% Similarity=0.233 Sum_probs=79.7
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHH
Q psy5021 13 IIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTI 92 (1021)
Q Consensus 13 iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~ 92 (1021)
++|+.|+|||||+++|....... ..+..|. ...........+....+.+|||||+.++..
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-------------------~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-------------------EEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRS 60 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-------------------cccccch-hheeeEEEEECCEEEEEEEEecCChHHHHh
Confidence 58999999999999997433210 0111122 222222222223367899999999999998
Q ss_pred HHHHHhhccCeEEEEEeCCCCCchhHHHHH-----HHHhhcCCCEEEEEeCcCCCCC
Q psy5021 93 EVERSLRVLDGAVIIICASSGIQPQTETVW-----FQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 93 ~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-----~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
.....++.+|++++|+|++.+........| ......++|+++++||+|+...
T Consensus 61 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 61 LRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 888999999999999999987665555544 3345678999999999998643
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=133.66 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=98.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|..++|||||+++|++.... .......|.+.......+......+.+|||||+++|...+.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~ 67 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFS--------------ESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNN 67 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHH
Confidence 3567889999999999999974311 01122223333333333322234568999999999998888
Q ss_pred HHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
..++.+|++|+|+|+++..... ...++..+... ..| +|+++||+|+.+...... .+...+....+ ++
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~~---~~~~~~~~~~~-----~~ 138 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVVDS---NIAKSFCDSLN-----IP 138 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCCH---HHHHHHHHHcC-----Ce
Confidence 8899999999999998744322 22333333332 345 899999999875221111 12222333333 47
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++||+++. +++++++.|.+.
T Consensus 139 ~~evSa~~~~-----------~i~~~f~~l~~~ 160 (188)
T cd04125 139 FFETSAKQSI-----------NVEEAFILLVKL 160 (188)
T ss_pred EEEEeCCCCC-----------CHHHHHHHHHHH
Confidence 8999999873 777777776553
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=135.11 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=98.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhhhHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~~~~ 729 (1021)
.+.++|..++|||||+++|.+.... .+....+..+... .+... ...+.+|||||+++|..
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~----------------~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP----------------EEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC----------------CCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHH
Confidence 3567899999999999999974311 0001111111111 12222 34678999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHH-H-HHHHHHH--cCCCeEEEEEeeccccchhhH-HHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTR-E-HILLARQ--VGVPNIVVFLNKADCVQDKEL-LDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~-e-~l~~~~~--~~ip~iIvviNK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~~ 804 (1021)
....+++.+|++++|+|+++....+.. . ++..... .++| +|+|+||+|+...... ......+..++.+..+.
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-- 141 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA-- 141 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC--
Confidence 888888999999999999875433332 2 2222222 2577 9999999998652100 00012334444444442
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++|. ++.++++.+.+.+
T Consensus 142 --~~~~e~Sa~~~~-----------~v~~~f~~l~~~~ 166 (187)
T cd04132 142 --FAYLECSAKTME-----------NVEEVFDTAIEEA 166 (187)
T ss_pred --cEEEEccCCCCC-----------CHHHHHHHHHHHH
Confidence 278999999874 7777777776543
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-12 Score=129.26 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=78.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+.++....- . .++ -.|+.... ......++....+++|||||+..
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f--~-----------~~~-------~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~ 61 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY--P-----------ETY-------VPTVFENY-TASFEIDEQRIELSLWDTSGSPY 61 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--C-----------CCc-------CCceEEEE-EEEEEECCEEEEEEEEECCCchh
Confidence 699999999999999999963211 0 011 11222211 11122234468899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHH-HHhh--cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWF-QSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~-~~~~--~~~p~iiviNK~D~~ 142 (1021)
|......+++.+|++|+|+|.++....+. ...|. .+.. .+.|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 62 YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 98888889999999999999987655444 24453 2322 478999999999985
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=135.77 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=100.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||+++|++.... .......|.+.......+......+.+|||||+++|...+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~--------------~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--------------CCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence 56778899999999999999874311 1111222333333333333223457899999999999888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...++.+|++|+|+|+++....+. .+++..+... ++| +++++||+|+.+.... ..++..++++..+ +
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~ 143 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV---STEEGEQFAKEHG-----L 143 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccCC---CHHHHHHHHHHcC-----C
Confidence 888999999999999987443332 2333333322 566 8999999998652111 1123344444443 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||+++. +++++++++.+.
T Consensus 144 ~~~e~Sa~~~~-----------~v~e~f~~l~~~ 166 (210)
T PLN03108 144 IFMEASAKTAQ-----------NVEEAFIKTAAK 166 (210)
T ss_pred EEEEEeCCCCC-----------CHHHHHHHHHHH
Confidence 79999999873 777777666543
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=128.84 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=75.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCcee-eeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI-TSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi-~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+++++|..|+|||||+.+++...- .. .+. .|+ ..-...+.. ++....+.+|||||+.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~--~~-----------~~~-------~t~~~~~~~~~~~--~~~~~~~~i~Dt~G~~ 59 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY--PT-----------EYV-------PTAFDNFSVVVLV--DGKPVRLQLCDTAGQD 59 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-----------CCC-------CceeeeeeEEEEE--CCEEEEEEEEECCCCh
Confidence 589999999999999999864211 00 000 011 111111222 2335788999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHH--HHHHHHhh--cCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTE--TVWFQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~--~~~~~~~~--~~~p~iiviNK~D~~ 142 (1021)
+|......+++.+|++|+|+|.++....+.. ..+..... .++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 60 EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred hhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 9988888889999999999999876443332 23333333 468999999999985
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.5e-13 Score=127.80 Aligned_cols=156 Identities=16% Similarity=0.108 Sum_probs=105.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeE--EEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH--YAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~--i~liDtpG~~~~~~ 729 (1021)
+.+-+.|.+++|||+|+|+++... +......+.|. +.....+..+++. +.+|||+|+++|.+
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~k--------------F~~qykaTIga--dFltKev~Vd~~~vtlQiWDTAGQERFqs 73 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKK--------------FSQQYKATIGA--DFLTKEVQVDDRSVTLQIWDTAGQERFQS 73 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH--------------HHHHhccccch--hheeeEEEEcCeEEEEEEEecccHHHhhh
Confidence 466677889999999999999743 11122223333 4444444444554 45799999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHH--HHHHc------CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHIL--LARQV------GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~--~~~~~------~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
.-...++.||+++||.|.+........+.|. .+... ..| +||+.||+|+.+.+.+. ....+.+..++..|
T Consensus 74 Lg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~~~~~~r~-VS~~~Aq~WC~s~g 151 (210)
T KOG0394|consen 74 LGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFP-FVILGNKIDVDGGKSRQ-VSEKKAQTWCKSKG 151 (210)
T ss_pred cccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCccc-EEEEcccccCCCCccce-eeHHHHHHHHHhcC
Confidence 8888889999999999998865555554442 23322 357 99999999986532221 12345566776655
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++|++.+||+.+. |+...++.+..
T Consensus 152 ----nipyfEtSAK~~~-----------NV~~AFe~ia~ 175 (210)
T KOG0394|consen 152 ----NIPYFETSAKEAT-----------NVDEAFEEIAR 175 (210)
T ss_pred ----CceeEEecccccc-----------cHHHHHHHHHH
Confidence 6899999999763 66666665543
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=132.74 Aligned_cols=154 Identities=18% Similarity=0.088 Sum_probs=98.0
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
..++|.+++|||||++++.+..... .. . ....+.....+..++ ..+.+|||||+.+|....
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~~~~~--------------~~--~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 65 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDAFPE--------------EY--V-PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 65 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC--------------CC--C-CceeeeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 5678899999999999998743110 00 0 001111112233333 446799999999998877
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHH--cCCCeEEEEEeeccccchhhHHHHH---------HHHHHHhhh
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQ--VGVPNIVVFLNKADCVQDKELLDLV---------EMEIRELLT 798 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l~ 798 (1021)
...+..+|++++|+|.++....+.. .++..+.. .++| +++++||+|+.+.......+ .++...+++
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK 144 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 7778899999999999875443322 22333333 3677 88999999986532211100 123344444
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.++. .+++++||++|. |++++++.+..
T Consensus 145 ~~~~----~~~~e~Sa~~~~-----------gi~~~f~~~~~ 171 (174)
T cd04135 145 EIGA----HCYVECSALTQK-----------GLKTVFDEAIL 171 (174)
T ss_pred HcCC----CEEEEecCCcCC-----------CHHHHHHHHHH
Confidence 4443 368999999884 88999988764
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-13 Score=133.99 Aligned_cols=160 Identities=18% Similarity=0.042 Sum_probs=100.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||++++++..... .....+.|.........+......+.+||++|.+.|...
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~-------------~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 70 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSL-------------NAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL 70 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCc-------------ccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc
Confidence 3456788999999999999999743110 111122222222222233222256788999999999887
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
+..++..+|++++|+|+++....+. .+++..... .++| +++|+||+|+.+..... ..+..++.+.+++. .
T Consensus 71 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~---~~~~~~~~~~~~~~----~ 142 (169)
T cd01892 71 NDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQRY---EVQPDEFCRKLGLP----P 142 (169)
T ss_pred chhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEccccccccccc---ccCHHHHHHHcCCC----C
Confidence 7888899999999999987432221 233332221 2577 99999999986522111 11223344444431 3
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++||+++. |++.+++.|.+.+
T Consensus 143 ~~~~Sa~~~~-----------~v~~lf~~l~~~~ 165 (169)
T cd01892 143 PLHFSSKLGD-----------SSNELFTKLATAA 165 (169)
T ss_pred CEEEEeccCc-----------cHHHHHHHHHHHh
Confidence 5889999873 7888888887643
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=135.62 Aligned_cols=156 Identities=12% Similarity=0.061 Sum_probs=98.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|..++|||||+++++..... ....+.|. ...........+.+|||||+++|...+..
T Consensus 3 IvivG~~~vGKTSLi~r~~~~~f~---------------~~~~Tig~----~~~~~~~~~~~l~iwDt~G~e~~~~l~~~ 63 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYMERRFK---------------DTVSTVGG----AFYLKQWGPYNISIWDTAGREQFHGLGSM 63 (220)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC---------------CCCCccce----EEEEEEeeEEEEEEEeCCCcccchhhHHH
Confidence 467889999999999999874310 01111122 12222334567899999999999988888
Q ss_pred HhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhh----------------HHHHHHHHH
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKE----------------LLDLVEMEI 793 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~----------------~~~~~~~~~ 793 (1021)
+++.+|++|+|+|+++....+. .++|..+.. .++| +|+|.||+|+.++.. ...-..++.
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~ 142 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA 142 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence 9999999999999997543333 233433333 2466 899999999875100 011112233
Q ss_pred HHhhhcccc--------C-CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 794 RELLTEYDF--------D-GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 794 ~~~l~~~~~--------~-~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+.+..+. . ...++++++||++|. |++++++.+.+
T Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~-----------~V~elf~~i~~ 187 (220)
T cd04126 143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY-----------NVDELFEYLFN 187 (220)
T ss_pred HHHHHHhCccccccccccccccceEEEeeCCCCC-----------CHHHHHHHHHH
Confidence 344443320 0 012579999999884 77777777765
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=131.92 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=94.3
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh-HHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY-IKNMI 732 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~-~~~~~ 732 (1021)
+.++|.+++|||||+++++..... ... ....+ +.......++.....+.+|||||+.++ ...+.
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~-~~~-------------~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFI-GEY-------------DPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccc-ccc-------------CCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHH
Confidence 457889999999999999863210 000 00000 111112222222345789999999863 45567
Q ss_pred HHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
.+++.+|++|+|+|+++....+. ..++..+.. .++| +|+|+||+|+.+.... . .++..++.+..+
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v-~--~~~~~~~~~~~~----- 137 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQV-S--TEEGEKLASELG----- 137 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCcc-C--HHHHHHHHHHcC-----
Confidence 77899999999999988544332 333333333 2677 8999999998642111 1 122333333333
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++||+++. .+++++++.|.+.
T Consensus 138 ~~~~e~Sa~~~~----------~~v~~~f~~l~~~ 162 (165)
T cd04146 138 CLFFEVSAAEDY----------DGVHSVFHELCRE 162 (165)
T ss_pred CEEEEeCCCCCc----------hhHHHHHHHHHHH
Confidence 478999999762 2788898888653
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-12 Score=127.43 Aligned_cols=155 Identities=25% Similarity=0.327 Sum_probs=101.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh-------
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD------- 726 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~------- 726 (1021)
++.+|.+++|||||++.|++.... ...+...+.|........ . ..+.+|||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~--------------~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL--------------ARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce--------------eeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHH
Confidence 478899999999999999953211 111223344554433332 2 3889999999533
Q ss_pred ---hHHHHHHHh---hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 727 ---YIKNMITGA---AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 727 ---~~~~~~~~~---~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
+...+..++ ...+++++++|+.........+.+..+...+.| +++++||+|+....+ .......+...++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~-vi~v~nK~D~~~~~~-~~~~~~~~~~~l~~~ 142 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKADKLKKSE-LAKALKEIKKELKLF 142 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCC-EEEEEEchhcCChHH-HHHHHHHHHHHHHhc
Confidence 333333333 356889999999887666777777888888888 889999999875322 223333444444321
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
....+++++||+++ .++.++++.|.++
T Consensus 143 ---~~~~~~~~~Sa~~~-----------~~~~~l~~~l~~~ 169 (170)
T cd01876 143 ---EIDPPIILFSSLKG-----------QGIDELRALIEKW 169 (170)
T ss_pred ---cCCCceEEEecCCC-----------CCHHHHHHHHHHh
Confidence 12357899999987 3788898888653
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-13 Score=120.29 Aligned_cols=73 Identities=41% Similarity=0.709 Sum_probs=67.4
Q ss_pred ceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeec-CCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 590 YILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDH-ENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 590 ~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+||||||+++|.+|++++|+|+++|++|||+|.++... ++++.|+|.+|++++++|..+|+++|+|.+.+..+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~ 74 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSME 74 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEE
Confidence 58999999999999999999999999999999999998 78999999999999999999999999999877654
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y .... |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=133.93 Aligned_cols=117 Identities=18% Similarity=0.267 Sum_probs=79.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
++|.++|+.|+|||||+.+|...... . ++ .++..+...+.....+.+..+.+||||||.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~--~--------t~-----------~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYR--S--------TV-----------TSIEPNVATFILNSEGKGKKFRLVDVPGHP 59 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCC--C--------cc-----------CcEeecceEEEeecCCCCceEEEEECCCCH
Confidence 47999999999999999999642110 0 00 011122222222211236789999999999
Q ss_pred CcHHHHHHHhhcc-CeEEEEEeCCCCCc--hhHHHHHHHH----h--hcCCCEEEEEeCcCCCCCCH
Q psy5021 89 DFTIEVERSLRVL-DGAVIIICASSGIQ--PQTETVWFQS----Q--KYKVPKMIFVNKMDRIGANY 146 (1021)
Q Consensus 89 ~f~~~~~~~l~~~-D~~ilvvda~~g~~--~~t~~~~~~~----~--~~~~p~iiviNK~D~~~~~~ 146 (1021)
+|...+..+++.+ +++|+|+|+..... ..+.+.|..+ . ..++|+++++||+|+..+..
T Consensus 60 ~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 60 KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 9999999999998 99999999998631 1222222221 1 24899999999999987653
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.9e-12 Score=117.62 Aligned_cols=111 Identities=20% Similarity=0.249 Sum_probs=84.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|-|+|..||||||+.++|+....... -.|.....-++.++ ++.+++||..|+.
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~~~i---------------------~pt~gf~Iktl~~~----~~~L~iwDvGGq~ 71 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDTDTI---------------------SPTLGFQIKTLEYK----GYTLNIWDVGGQK 71 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCcccc---------------------CCccceeeEEEEec----ceEEEEEEcCCcc
Confidence 3478999999999999999963221100 12455555577888 9999999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHH----HHhhcCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWF----QSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~----~~~~~~~p~iiviNK~D~~~~ 144 (1021)
.+..-+..++..+|+.|+|+|.++.. ..++...+. .-+..+.|++++.||.|++++
T Consensus 72 ~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 72 TLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred hhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 99999999999999999999998753 222333333 334567899999999999754
|
|
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-12 Score=135.12 Aligned_cols=110 Identities=12% Similarity=0.144 Sum_probs=69.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCcee--eeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI--TSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi--~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+|+++|..|+|||||+++++. +.... ..+ ..|+ +....++.+ ++....+++|||||+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~--~~~~~----------~~~-------~~t~~~~~~~~~i~~--~~~~~~l~i~Dt~G~ 60 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTS--GEYDD----------HAY-------DASGDDDTYERTVSV--DGEESTLVVIDHWEQ 60 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhc--CCcCc----------cCc-------CCCccccceEEEEEE--CCEEEEEEEEeCCCc
Confidence 689999999999999999962 11110 000 0011 011111222 223678999999999
Q ss_pred CCcHHHHHHHhh-ccCeEEEEEeCCCCCchhH-HHHHHHHhh----cCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLR-VLDGAVIIICASSGIQPQT-ETVWFQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~-~~D~~ilvvda~~g~~~~t-~~~~~~~~~----~~~p~iiviNK~D~~ 142 (1021)
.++. ....++ .+|++++|+|+++...... ...+..+.. .++|+++|+||+|+.
T Consensus 61 ~~~~--~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 61 EMWT--EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred chHH--HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 8432 234556 8999999999998643332 222333332 478999999999985
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=141.60 Aligned_cols=151 Identities=20% Similarity=0.199 Sum_probs=105.5
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-CeEEEEEecCChhhh---
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-NKHYAHVDCPGHADY--- 727 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~~~--- 727 (1021)
.+++.+|++|+|||||+|+|++......+..| .|.+.+...+... ++.+.+.||-|+-+-
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF----------------ATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~ 256 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLF----------------ATLDPTTRRIELGDGRKVLLTDTVGFIRDLPH 256 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeecccccc----------------ccccCceeEEEeCCCceEEEecCccCcccCCh
Confidence 56788999999999999999976544333333 2667777777776 589999999996553
Q ss_pred -----HHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 728 -----IKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 728 -----~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
.+.++.....||++++|||++++.. .+.......+..+ .+| +|+|.||+|++.+... ...+...
T Consensus 257 ~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p-~i~v~NKiD~~~~~~~----~~~~~~~-- 329 (411)
T COG2262 257 PLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIP-IILVLNKIDLLEDEEI----LAELERG-- 329 (411)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCC-EEEEEecccccCchhh----hhhhhhc--
Confidence 3445666789999999999998643 2333333444444 456 9999999998864321 1111111
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
. . ..+++||++|. |++.|.+.|...++
T Consensus 330 ---~---~-~~v~iSA~~~~-----------gl~~L~~~i~~~l~ 356 (411)
T COG2262 330 ---S---P-NPVFISAKTGE-----------GLDLLRERIIELLS 356 (411)
T ss_pred ---C---C-CeEEEEeccCc-----------CHHHHHHHHHHHhh
Confidence 1 1 36889999884 88999999887664
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-12 Score=128.36 Aligned_cols=154 Identities=20% Similarity=0.155 Sum_probs=97.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
..+.+|.+++|||||+++|+....... .....+... .....+......+.+|||||+.+|.....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVED--------------YEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccc--------------cCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHH
Confidence 457889999999999999996431110 000001011 01112222335688999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..++.+|++++|+|.++... ....+++..... .++| +++|+||+|+....... ..+...+.+.++ .
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~~---~~~~~~~~~~~~-----~ 137 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQVS---SEEAANLARQWG-----V 137 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccccC---HHHHHHHHHHhC-----C
Confidence 99999999999999876432 112233332222 4678 99999999987511111 112223333333 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||+++ +|++++++.|.+.
T Consensus 138 ~~~~~Sa~~~-----------~gi~~l~~~l~~~ 160 (164)
T cd04139 138 PYVETSAKTR-----------QNVEKAFYDLVRE 160 (164)
T ss_pred eEEEeeCCCC-----------CCHHHHHHHHHHH
Confidence 7899999988 4888898888653
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=134.02 Aligned_cols=156 Identities=16% Similarity=0.147 Sum_probs=100.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhhhH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHADYI 728 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~~~ 728 (1021)
+.+.++|.+++|||||+++|++..... .....++.+.....+... ...+.+|||||+++|.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~----------------~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~ 66 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE----------------VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR 66 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH
Confidence 456788999999999999999743110 001122233333333332 2467899999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.....+++.+|++++|+|.++..... ..+++..+... ..+.++|+.||+|+.+..... .++...+.+..+
T Consensus 67 ~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~--- 140 (211)
T cd04111 67 SITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVT---REEAEKLAKDLG--- 140 (211)
T ss_pred HHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccC---HHHHHHHHHHhC---
Confidence 88888899999999999998743322 23333333322 223378899999987522111 122334444443
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| +|++++++.|.+.+
T Consensus 141 --~~~~e~Sak~g-----------~~v~e~f~~l~~~~ 165 (211)
T cd04111 141 --MKYIETSARTG-----------DNVEEAFELLTQEI 165 (211)
T ss_pred --CEEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 57999999987 37888888887644
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=121.43 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=94.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
..+..|.|+|.+|+|||||.+++.+. +..+....||.....+-.+..++....+.+|||+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~--------------------kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTA 66 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNK--------------------KFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTA 66 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHH--------------------HHHHHhccccchhheeeEEEEcCeEEEEEEEecc
Confidence 45678999999999999999999743 2234455677666665566556667889999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHH--hh------cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQS--QK------YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~--~~------~~~p~iiviNK~D~~~ 143 (1021)
|++.|.+.-...+|.+|.+++|.|....-.......|+.- .+ ..-|+|++.||+|..+
T Consensus 67 GQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 67 GQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred cHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 9999999998999999999999999987777777777543 11 3579999999999864
|
|
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=132.14 Aligned_cols=156 Identities=12% Similarity=0.065 Sum_probs=101.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+..+|..++|||||+.++....- .....++.+... ...+..++ ..+.+|||+|+++|..
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f--------------~~~~~pT~~~~~---~~~~~~~~~~~~l~iwDtaG~e~~~~ 68 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF--------------PENYVPTVFENY---TASFEIDTQRIELSLWDTSGSPYYDN 68 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC--------------CCccCCceeeee---EEEEEECCEEEEEEEEECCCchhhHh
Confidence 4567888999999999999987431 001111112111 12233333 4678999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHH---------HHHHHHHHHh
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELL---------DLVEMEIREL 796 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~---------~~~~~~~~~~ 796 (1021)
....+++.+|++|+|+|.++....+. ..++..+... +.| +|+|.||+|+.+..... .-..++..++
T Consensus 69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (182)
T cd04172 69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANM 147 (182)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHH
Confidence 88888999999999999987544333 2333444433 466 89999999986421000 0112345566
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcch-HHHHHHhhhc
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTS-IKKLLDVLDS 840 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~-i~~Ll~~l~~ 840 (1021)
.+.++. .+++.+||++|. + ++++++.+..
T Consensus 148 a~~~~~----~~~~E~SAk~~~-----------n~v~~~F~~~~~ 177 (182)
T cd04172 148 AKQIGA----ATYIECSALQSE-----------NSVRDIFHVATL 177 (182)
T ss_pred HHHcCC----CEEEECCcCCCC-----------CCHHHHHHHHHH
Confidence 666552 379999999884 5 8888877654
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-12 Score=135.46 Aligned_cols=158 Identities=15% Similarity=0.046 Sum_probs=102.3
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|..++|||+|+.++++..-. .....+.|... ...+..++ ..+.||||+|+++|.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~--------------~~y~pTi~~~~---~~~i~~~~~~v~l~iwDTaG~e~~~ 75 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP--------------ETYVPTVFENY---TAGLETEEQRVELSLWDTSGSPYYD 75 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC--------------CCcCCceeeee---EEEEEECCEEEEEEEEeCCCchhhH
Confidence 456778899999999999999874311 11111112211 11233333 567899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhH---------HHHHHHHHHH
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKEL---------LDLVEMEIRE 795 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~---------~~~~~~~~~~ 795 (1021)
..+..+++.||++|+|+|.++....+. ..++..+... +.| +|+|.||+|+.+.... ..-..++..+
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~ 154 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA 154 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence 888889999999999999987554432 2344444432 566 8999999998531100 0011235566
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+.+.++. .+++.+||++|. .+++++++.+..
T Consensus 155 ~a~~~~~----~~~~EtSAktg~----------~~V~e~F~~~~~ 185 (232)
T cd04174 155 LAKQLGA----EVYLECSAFTSE----------KSIHSIFRSASL 185 (232)
T ss_pred HHHHcCC----CEEEEccCCcCC----------cCHHHHHHHHHH
Confidence 6666653 268999999872 157777777654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-13 Score=115.21 Aligned_cols=70 Identities=24% Similarity=0.457 Sum_probs=66.1
Q ss_pred eeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC-CeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE-NFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 593 EP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
||||+++|.||++|+|+|+++|++|||+|.+.+..+ +.+.|+|.+|++++++|..+||++|.|.+.+...
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~ 71 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHV 71 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEE
Confidence 899999999999999999999999999999999876 6799999999999999999999999999987653
|
A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.1e-12 Score=124.93 Aligned_cols=120 Identities=20% Similarity=0.167 Sum_probs=86.9
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+..-.|.++|.+++|||+++.++...+-... +.. .|-|+...-++.. ++....+.+||
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~-------------~~s-----TiGIDFk~kti~l--~g~~i~lQiWD 67 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS-------------FIS-----TIGIDFKIKTIEL--DGKKIKLQIWD 67 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCC-------------ccc-----eEEEEEEEEEEEe--CCeEEEEEEEE
Confidence 567788899999999999999999863322111 100 1111211112222 34478899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
|.|+..|...+..+++.|+++++|+|.+...+......|.... ..++|.++|.||+|+..
T Consensus 68 taGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 68 TAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred cccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 9999999999999999999999999999877666665564332 24789999999999853
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-12 Score=147.00 Aligned_cols=109 Identities=21% Similarity=0.331 Sum_probs=83.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.||++|.+|+|||||+|+|. |+-.+.|+. .|.|++.....+.++ ++.+.++|.||..+
T Consensus 5 ~valvGNPNvGKTtlFN~LT---G~~q~VgNw---------------pGvTVEkkeg~~~~~----~~~i~ivDLPG~YS 62 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALT---GANQKVGNW---------------PGVTVEKKEGKLKYK----GHEIEIVDLPGTYS 62 (653)
T ss_pred eEEEecCCCccHHHHHHHHh---ccCceecCC---------------CCeeEEEEEEEEEec----CceEEEEeCCCcCC
Confidence 49999999999999999994 443344433 489999999999999 89999999999865
Q ss_pred cH-----HH-HHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 90 FT-----IE-VERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~-----~~-~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+. .. +.+++ ...|.+|-|+||++- .....+--|+.+.++|+++++|++|..
T Consensus 63 L~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 63 LTAYSEDEKVARDFLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred CCCCCchHHHHHHHHhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 53 12 33444 356999999999862 223333356678899999999999964
|
|
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=121.51 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=99.7
Q ss_pred cCCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC
Q psy5021 644 GYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG 723 (1021)
Q Consensus 644 ~~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG 723 (1021)
+|...++.+ ++|-+++|||+|+-+++... +...+-.+.|+........++.+..++.+|||+|
T Consensus 7 ~~~~t~KiL---lIGeSGVGKSSLllrFv~~~--------------fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG 69 (209)
T KOG0080|consen 7 GYDTTFKIL---LIGESGVGKSSLLLRFVSNT--------------FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG 69 (209)
T ss_pred CcceeEEEE---EEccCCccHHHHHHHHHhcc--------------cCccCCceeeeeEEEEEEEEcCceEEEEEEeccc
Confidence 344444444 45569999999999999743 2222233456666666666666667889999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHH-HHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHIL-LARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~-~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
+++|...+.++++.|.++|+|.|.+........++|. .+... .+- .++|.||+|.-+.. .--+++=..+.+
T Consensus 70 qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~dii-kmlVgNKiDkes~R---~V~reEG~kfAr 145 (209)
T KOG0080|consen 70 QERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDII-KMLVGNKIDKESER---VVDREEGLKFAR 145 (209)
T ss_pred hHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHh-Hhhhcccccchhcc---cccHHHHHHHHH
Confidence 9999999999999999999999998754433334443 33322 333 34688999965311 111234445555
Q ss_pred ccccCCCceEEEEecccccc
Q psy5021 799 EYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~ 818 (1021)
+.+ +-|+.+||++..
T Consensus 146 ~h~-----~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 146 KHR-----CLFIECSAKTRE 160 (209)
T ss_pred hhC-----cEEEEcchhhhc
Confidence 553 578999999863
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-12 Score=129.62 Aligned_cols=156 Identities=18% Similarity=0.110 Sum_probs=97.6
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+-++|.+++|||||+++|++........ ............+......+.+|||||+++|......
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~ 67 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGKFPTEYV---------------PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPL 67 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCC---------------CceeeeeEEEEEECCEEEEEEEEeCCCcccccccchh
Confidence 4567889999999999999743210000 0000111111222223456889999999988766666
Q ss_pred HhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHH--------HHHHHHHhhhccc
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLDL--------VEMEIRELLTEYD 801 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~--------~~~~~~~~l~~~~ 801 (1021)
.++.+|++++|+|+++....+. .+++..+... ++| +++|+||+|+......... ...+..++....+
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 146 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG 146 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence 7789999999999987433222 2334433333 477 9999999998763322110 1233344444444
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
. .+++++||++| +++.++++.|.+
T Consensus 147 ~----~~~~~~Sa~~~-----------~gi~~l~~~i~~ 170 (171)
T cd00157 147 A----IGYMECSALTQ-----------EGVKEVFEEAIR 170 (171)
T ss_pred C----eEEEEeecCCC-----------CCHHHHHHHHhh
Confidence 2 37999999987 388899988754
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=130.04 Aligned_cols=114 Identities=16% Similarity=0.118 Sum_probs=79.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|..++|||||+.++....- . .++ -.|+.... ...+..++....++||||+|+.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~-----------~~y-------~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e 60 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--P-----------GSY-------VPTVFENY-TASFEIDKRRIELNMWDTSGSS 60 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--C-----------Ccc-------CCccccce-EEEEEECCEEEEEEEEeCCCcH
Confidence 4789999999999999999963211 0 011 11222111 1122223446889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHH-h--hcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQS-Q--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~-~--~~~~p~iiviNK~D~~~ 143 (1021)
.|......+++.+|++|+|+|.++....+.. ..|... . ..++|+++|.||+|+..
T Consensus 61 ~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 61 YYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred HHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 9999888999999999999999986443332 345432 2 24789999999999853
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-12 Score=131.25 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=99.4
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+..+|..++|||||++++.+..-. .....+.+. +. ...+..++ ..+.+|||||+++|...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~--------------~~~~~t~~~--~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~ 65 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYP--------------ETYVPTVFE--NY-TASFEIDEQRIELSLWDTSGSPYYDNV 65 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--------------CCcCCceEE--EE-EEEEEECCEEEEEEEEECCCchhhhhc
Confidence 3567888999999999999874310 001111111 11 12233333 45779999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHH---------HHHHHHHHHhh
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELL---------DLVEMEIRELL 797 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~---------~~~~~~~~~~l 797 (1021)
...+++.+|++|+|+|.++....+. ..++..+... ..| +|+|.||+|+.++.... .-..++..++.
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCC-EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 8888899999999999987554333 2344444443 456 89999999986421000 01123445555
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+.++. .+++.+||++|. .+++++++.+..
T Consensus 145 ~~~~~----~~~~E~SA~~~~----------~~v~~~F~~~~~ 173 (178)
T cd04131 145 KQLGA----EIYLECSAFTSE----------KSVRDIFHVATM 173 (178)
T ss_pred HHhCC----CEEEECccCcCC----------cCHHHHHHHHHH
Confidence 55542 378999999873 137888877654
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-13 Score=115.44 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=66.0
Q ss_pred eeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeee
Q psy5021 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVD 661 (1021)
Q Consensus 593 EP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~ 661 (1021)
||||+++|.||++++|+|+++|++|||+|.+.+..++.+.|+|.+|++++++|.++|+++|.|.+.+..
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~ 69 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLET 69 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEE
Confidence 899999999999999999999999999999999888899999999999999999999999999987754
|
This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. |
| >cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-13 Score=115.42 Aligned_cols=69 Identities=45% Similarity=0.677 Sum_probs=65.7
Q ss_pred eeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeee
Q psy5021 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVD 661 (1021)
Q Consensus 593 EP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~ 661 (1021)
||||+++|.||++++|+|+++|++|||+|.+++..++.+.|+|.+|++++++|.++|+++|.|.+.+..
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~ 69 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSM 69 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEE
Confidence 899999999999999999999999999999999877889999999999999999999999999987754
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=129.78 Aligned_cols=116 Identities=20% Similarity=0.122 Sum_probs=81.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+++|+.|+|||||+++++.. .... ....|+........+..++....+++|||||
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g 67 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTG--EFEK------------------KYIPTLGVEVHPLKFYTNCGPICFNVWDTAG 67 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhC--CCCC------------------CCCCccceEEEEEEEEECCeEEEEEEEECCC
Confidence 3457999999999999999887631 1110 0112333333333333344478999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHH---hhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~---~~~~~p~iiviNK~D~~ 142 (1021)
+.+|.......++.+|++++|+|.++....+....|... ...++|+++++||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 68 QEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred chhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 999988888888999999999999987665555444321 12478999999999974
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-12 Score=122.32 Aligned_cols=141 Identities=19% Similarity=0.165 Sum_probs=98.7
Q ss_pred eeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHh
Q psy5021 656 TIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGA 735 (1021)
Q Consensus 656 ~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~ 735 (1021)
..|..++|||.|+.+++... +...+..+.|+..-.....++....++.+|||+||+.|...+.+++
T Consensus 11 iiGd~gVGKSclllrf~~kr--------------F~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syY 76 (216)
T KOG0098|consen 11 IIGDTGVGKSCLLLRFTDKR--------------FQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYY 76 (216)
T ss_pred EECCCCccHHHHHHHHhccC--------------ccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHh
Confidence 45668999999999999743 3333434444433333333443445678999999999999999999
Q ss_pred hhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCCCe--EEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEe
Q psy5021 736 AQMDGAILVCSAVDGPM-PQTREHILLARQVGVPN--IVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIG 812 (1021)
Q Consensus 736 ~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~~ip~--iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~i 812 (1021)
+.|-+||||.|.+...+ .....||.-++.++-++ |+++.||+|+.... +--+++-+.+.+..|+ .++.+
T Consensus 77 r~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgL-----ifmET 148 (216)
T KOG0098|consen 77 RGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGL-----IFMET 148 (216)
T ss_pred ccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCc-----eeehh
Confidence 99999999999987544 33444556666664333 56677999997532 2234566777777775 57799
Q ss_pred cccccc
Q psy5021 813 SALLAL 818 (1021)
Q Consensus 813 Sa~~~~ 818 (1021)
||+++.
T Consensus 149 Sakt~~ 154 (216)
T KOG0098|consen 149 SAKTAE 154 (216)
T ss_pred hhhhhh
Confidence 999883
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.3e-12 Score=126.40 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=98.5
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--CeEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--NKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--~~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|.+++|||||+++|++.... ... . ..+.+.....+... ...+.+||+||+.++....
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~~-~~~--------~--------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 64 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFV-EEY--------D--------PTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMR 64 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCC-cCc--------C--------CChhHeEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 467899999999999999874310 000 0 00111222233333 3567899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
...+..+|++++|+|.++... .+...++..+.. .+.| +++++||+|+...... ..+++..+.+..+
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~----- 135 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQV---SKEEGKALAKEWG----- 135 (160)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCccccccee---cHHHHHHHHHHcC-----
Confidence 888899999999999887432 223333333332 2566 9999999998752111 1233444444443
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+++++|++++ .++++++++|.+
T Consensus 136 ~~~~~~S~~~~-----------~~i~~l~~~l~~ 158 (160)
T cd00876 136 CPFIETSAKDN-----------INIDEVFKLLVR 158 (160)
T ss_pred CcEEEeccCCC-----------CCHHHHHHHHHh
Confidence 47899999977 388999998865
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-12 Score=128.87 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=96.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
...++|..++|||||++++.+..... ......+... .....+......+.+|||||+++|...+.
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPE--------------VYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccc
Confidence 35678999999999999999743110 0011111111 11222222234578999999999987776
Q ss_pred HHhhhCCEEEEEEECCCCCcHHH-HHHH-HHHHH--cCCCeEEEEEeeccccchhhHHHHH---------HHHHHHhhhc
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQT-REHI-LLARQ--VGVPNIVVFLNKADCVQDKELLDLV---------EMEIRELLTE 799 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt-~e~l-~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l~~ 799 (1021)
.++.++|++++|+|.++....+. .+.| ..+.. .++| +++++||+|+.+.....+.+ ..+..++.+.
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~ 146 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANK 146 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHH
Confidence 77899999999999986432222 2222 22332 2677 99999999987532211111 1222333333
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+ ..+++++||++|. |+++++++|.+
T Consensus 147 ~~----~~~~~~~Sa~~~~-----------~v~~lf~~l~~ 172 (175)
T cd01870 147 IG----AFGYMECSAKTKE-----------GVREVFEMATR 172 (175)
T ss_pred cC----CcEEEEeccccCc-----------CHHHHHHHHHH
Confidence 33 2478999999873 88999988864
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-12 Score=129.25 Aligned_cols=154 Identities=19% Similarity=0.161 Sum_probs=97.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--CeEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--NKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--~~~i~liDtpG~~~~~~ 729 (1021)
..+.++|.+++|||||++++++....... ....+ ......+... +..+.+|||||+.+|..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~--------------~~t~~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY--------------YPTIE---NTFSKIIRYKGQDYHLEIVDTAGQDEYSI 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc--------------Ccchh---hhEEEEEEECCEEEEEEEEECCChHhhHH
Confidence 35678999999999999999964311000 00000 0011122333 34578999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
....++..+|++++|+|.++....+. .+.+..+.. .+.| +|+++||+|+........ .+...+.+.++
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~---~~~~~~~~~~~--- 137 (180)
T cd04137 65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQVST---EEGKELAESWG--- 137 (180)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCccCH---HHHHHHHHHcC---
Confidence 88888999999999999987543222 222222222 3567 889999999864221111 12233333333
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||+++ +++.+++++|.+.+
T Consensus 138 --~~~~~~Sa~~~-----------~gv~~l~~~l~~~~ 162 (180)
T cd04137 138 --AAFLESSAREN-----------ENVEEAFELLIEEI 162 (180)
T ss_pred --CeEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 47899999987 37777777776543
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-12 Score=122.06 Aligned_cols=116 Identities=20% Similarity=0.168 Sum_probs=82.1
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
..-.+.|+|..|+|||+|+.++....-... .| .|+......-.+..+++..++++|||.|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~-----------hd---------~TiGvefg~r~~~id~k~IKlqiwDtaG 64 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPV-----------HD---------LTIGVEFGARMVTIDGKQIKLQIWDTAG 64 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccc-----------cc---------ceeeeeeceeEEEEcCceEEEEEEecCC
Confidence 345678999999999999998853221111 11 1333222222233345688999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|+.|.+-+.++++.+-|||||.|.+..-.......| ..++ ..++-++++.||+|+.
T Consensus 65 qe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 65 QESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred cHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 999999999999999999999999876555444444 3333 3567788889999985
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=123.16 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=74.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCc
Q psy5021 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDF 90 (1021)
Q Consensus 11 i~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f 90 (1021)
|+++|+.|+|||||++.|......... +...+.|.... .+.+. ..+.++||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~----------------~~~~~~t~~~~--~~~~~-----~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLART----------------SKTPGKTQLIN--FFNVN-----DKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeee----------------cCCCCcceeEE--EEEcc-----CeEEEecCCCcccc
Confidence 789999999999999999632111110 01112232221 12222 37899999998653
Q ss_pred ----------HHHHHHHhh---ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 91 ----------TIEVERSLR---VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 91 ----------~~~~~~~l~---~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
...+..++. .++++++++|...........+++.+...+.|+++++||+|+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 59 KVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred ccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 222333333 4678999999998877777778888888899999999999985
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-12 Score=129.60 Aligned_cols=156 Identities=20% Similarity=0.155 Sum_probs=110.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
-+..++-+.|..++|||||+++|...... .. ..|.......+...+..+.+||.+|+..+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~---------------~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~ 72 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS---------------ET----IPTIGFNIEEIKYKGYSLTIWDLGGQESFR 72 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE---------------EE----EEESSEEEEEEEETTEEEEEEEESSSGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc---------------cc----CcccccccceeeeCcEEEEEEecccccccc
Confidence 45677888999999999999999863211 01 113334445566788999999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
+.+..++..+|++|+|||+++.. ..+.++.+..+.. .++| ++|++||+|+.+... . .++...+....+.
T Consensus 73 ~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~~~-~----~~i~~~l~l~~l~ 146 (175)
T PF00025_consen 73 PLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP-ILILANKQDLPDAMS-E----EEIKEYLGLEKLK 146 (175)
T ss_dssp GGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTSST-H----HHHHHHTTGGGTT
T ss_pred ccceeeccccceeEEEEecccceeecccccchhhhcchhhcccce-EEEEeccccccCcch-h----hHHHhhhhhhhcc
Confidence 99999999999999999998743 2445555544333 2566 999999999876321 1 2333333322232
Q ss_pred -CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 -GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 -~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
...+.++.+||.+| +|+.+.+++|.+
T Consensus 147 ~~~~~~v~~~sa~~g-----------~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 147 NKRPWSVFSCSAKTG-----------EGVDEGLEWLIE 173 (175)
T ss_dssp SSSCEEEEEEBTTTT-----------BTHHHHHHHHHH
T ss_pred cCCceEEEeeeccCC-----------cCHHHHHHHHHh
Confidence 45678999999988 488888888864
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1021 | ||||
| 4fn5_A | 709 | Elongation Factor G 1 (Pseudomonas Aeruginosa) In C | 1e-174 | ||
| 4fn5_A | 709 | Elongation Factor G 1 (Pseudomonas Aeruginosa) In C | 9e-09 | ||
| 3j0e_H | 702 | Models For The T. Thermophilus Ribosome Recycling F | 1e-171 | ||
| 3j0e_H | 702 | Models For The T. Thermophilus Ribosome Recycling F | 1e-08 | ||
| 2rdo_7 | 704 | 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = | 1e-171 | ||
| 2rdo_7 | 704 | 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = | 1e-08 | ||
| 1ktv_A | 691 | Crystal Structure Of Elongation Factor G Dimer With | 1e-166 | ||
| 1ktv_A | 691 | Crystal Structure Of Elongation Factor G Dimer With | 2e-08 | ||
| 1efg_A | 691 | The Crystal Structure Of Elongation Factor G Comple | 1e-166 | ||
| 1efg_A | 691 | The Crystal Structure Of Elongation Factor G Comple | 2e-08 | ||
| 2j7k_A | 691 | Crystal Structure Of The T84a Mutant Ef-G:gdpcp Com | 1e-166 | ||
| 2j7k_A | 691 | Crystal Structure Of The T84a Mutant Ef-G:gdpcp Com | 2e-08 | ||
| 3izp_E | 688 | Conformation Of Ef-G During Translocation Length = | 1e-165 | ||
| 3izp_E | 688 | Conformation Of Ef-G During Translocation Length = | 2e-08 | ||
| 2bm1_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 1e-165 | ||
| 2bm1_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 5e-08 | ||
| 1fnm_A | 691 | Structure Of Thermus Thermophilus Ef-G H573a Length | 1e-165 | ||
| 1fnm_A | 691 | Structure Of Thermus Thermophilus Ef-G H573a Length | 2e-08 | ||
| 2bm0_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 1e-165 | ||
| 2bm0_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 8e-08 | ||
| 2bv3_A | 691 | Crystal Structure Of A Mutant Elongation Factor G T | 1e-164 | ||
| 2bv3_A | 691 | Crystal Structure Of A Mutant Elongation Factor G T | 2e-08 | ||
| 3zz0_A | 693 | Crystal Structure Of Ribosomal Elongation Factor (E | 1e-162 | ||
| 3zz0_A | 693 | Crystal Structure Of Ribosomal Elongation Factor (E | 9e-08 | ||
| 2xex_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 1e-161 | ||
| 2xex_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 2e-07 | ||
| 3zzu_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 1e-161 | ||
| 3zzu_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 3e-07 | ||
| 3zzt_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 1e-161 | ||
| 3zzt_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 5e-07 | ||
| 3mmp_A | 678 | Structure Of The Qb Replicase, An Rna-Dependent Rna | 1e-152 | ||
| 3agp_A | 1289 | Structure Of Viral Polymerase Form I Length = 1289 | 1e-152 | ||
| 1dg1_G | 394 | Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Len | 1e-151 | ||
| 1efc_A | 393 | Intact Elongation Factor From E.Coli Length = 393 | 1e-151 | ||
| 3u6b_A | 394 | Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 | 1e-151 | ||
| 1ob2_A | 393 | E. Coli Elongation Factor Ef-Tu Complexed With The | 1e-151 | ||
| 1d8t_A | 393 | Crystal Structure Of Elongation Factor, Tu (Ef-Tu-M | 1e-151 | ||
| 1efu_A | 385 | Elongation Factor Complex Ef-TuEF-Ts From Escherich | 1e-151 | ||
| 1zn0_B | 655 | Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map | 1e-148 | ||
| 1ttt_A | 405 | Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Com | 1e-144 | ||
| 4abr_Z | 405 | Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kir | 1e-144 | ||
| 1eft_A | 405 | The Crystal Structure Of Elongation Factor Ef-Tu Fr | 1e-144 | ||
| 2y0u_Z | 405 | The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bou | 1e-144 | ||
| 2c77_A | 405 | Ef-Tu Complexed With A Gtp Analog And The Antibioti | 1e-144 | ||
| 2c78_A | 405 | Ef-Tu Complexed With A Gtp Analog And The Antibioti | 1e-144 | ||
| 1exm_A | 405 | Crystal Structure Of Thermus Thermophilus Elongatio | 1e-144 | ||
| 2y0y_Z | 405 | The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bo | 1e-144 | ||
| 1aip_A | 405 | Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt | 1e-144 | ||
| 2wrn_Z | 406 | The Crystal Structure Of The 70s Ribosome Bound To | 1e-144 | ||
| 1efm_A | 379 | Structure Of The Gdp Domain Of Ef-Tu And Location O | 1e-141 | ||
| 1mj1_A | 405 | Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIB | 1e-136 | ||
| 2hdn_B | 335 | Trypsin-Modified Elongation Factor Tu In Complex Wi | 1e-130 | ||
| 2hcj_B | 335 | "trypsin-Modified Elongation Factor Tu In Complex W | 1e-128 | ||
| 1d2e_A | 397 | Crystal Structure Of Mitochondrial Ef-Tu In Complex | 1e-125 | ||
| 1xb2_A | 409 | Crystal Structure Of Bos Taurus Mitochondrial Elong | 1e-121 | ||
| 1wdt_A | 665 | Crystal Structure Of Ttk003000868 From Thermus Ther | 3e-85 | ||
| 1wdt_A | 665 | Crystal Structure Of Ttk003000868 From Thermus Ther | 3e-05 | ||
| 3j25_A | 638 | Structural Basis For Tetm-Mediated Tetracycline Res | 1e-47 | ||
| 3j25_A | 638 | Structural Basis For Tetm-Mediated Tetracycline Res | 1e-16 | ||
| 1jny_A | 435 | Crystal Structure Of Sulfolobus Solfataricus Elonga | 5e-39 | ||
| 3agj_A | 437 | Crystal Structure Of Archaeal Pelota And Gtp-bound | 1e-37 | ||
| 3vmf_A | 440 | Archaeal Protein Length = 440 | 1e-37 | ||
| 3vqt_A | 548 | Crystal Structure Analysis Of The Translation Facto | 3e-36 | ||
| 3vqt_A | 548 | Crystal Structure Analysis Of The Translation Facto | 3e-09 | ||
| 1f60_A | 458 | Crystal Structure Of The Yeast Elongation Factor Co | 2e-35 | ||
| 2h5e_A | 529 | Crystal Structure Of E.Coli Polypeptide Release Fac | 2e-34 | ||
| 2h5e_A | 529 | Crystal Structure Of E.Coli Polypeptide Release Fac | 3e-08 | ||
| 3uoq_W | 534 | Crystal Structure Of Release Factor Rf3 Trapped In | 2e-34 | ||
| 3uoq_W | 534 | Crystal Structure Of Release Factor Rf3 Trapped In | 3e-08 | ||
| 4ac9_A | 482 | Crystal Structure Of Translation Elongation Factor | 1e-33 | ||
| 3tr5_A | 528 | Structure Of A Peptide Chain Release Factor 3 (Prfc | 4e-33 | ||
| 3tr5_A | 528 | Structure Of A Peptide Chain Release Factor 3 (Prfc | 5e-09 | ||
| 3j2k_7 | 439 | Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ | 2e-25 | ||
| 1kjz_A | 410 | Structure Of The Large Gamma Subunit Of Initiation | 4e-24 | ||
| 1kk3_A | 410 | Structure Of The Wild-Type Large Gamma Subunit Of I | 4e-24 | ||
| 2d74_A | 419 | Crystal Structure Of Translation Initiation Factor | 2e-23 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 3e-23 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 8e-14 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 2e-08 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 3e-23 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 7e-14 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 2e-08 | ||
| 1r5b_A | 467 | Crystal Structure Analysis Of Sup35 Length = 467 | 1e-22 | ||
| 2ywe_A | 600 | Crystal Structure Of Lepa From Aquifex Aeolicus Len | 3e-22 | ||
| 2ywe_A | 600 | Crystal Structure Of Lepa From Aquifex Aeolicus Len | 6e-14 | ||
| 2ywg_A | 600 | Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae | 4e-22 | ||
| 2ywg_A | 600 | Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae | 4e-14 | ||
| 1kk0_A | 410 | Structure Of The Large Gamma Subunit Of Initiation | 4e-21 | ||
| 3mca_A | 592 | Structure Of The Dom34-Hbs1 Complex And Implication | 2e-20 | ||
| 2aho_A | 414 | Structure Of The Archaeal Initiation Factor Eif2 Al | 5e-20 | ||
| 2pmd_A | 415 | The Structures Of Aif2gamma Subunit From The Archae | 5e-20 | ||
| 1s0u_A | 408 | Eif2gamma Apo Length = 408 | 7e-20 | ||
| 3p26_A | 483 | Crystal Structure Of S. Cerevisiae Hbs1 Protein (Ap | 1e-19 | ||
| 3cb4_D | 599 | The Crystal Structure Of Lepa Length = 599 | 1e-19 | ||
| 3cb4_D | 599 | The Crystal Structure Of Lepa Length = 599 | 7e-09 | ||
| 3deg_C | 545 | Complex Of Elongating Escherichia Coli 70s Ribosome | 1e-19 | ||
| 3deg_C | 545 | Complex Of Elongating Escherichia Coli 70s Ribosome | 8e-09 | ||
| 3izq_1 | 611 | Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To | 2e-19 | ||
| 3p27_A | 483 | Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gd | 4e-19 | ||
| 3pen_A | 403 | Structure Of Archaeal Initiation Factor Aif2gamma S | 1e-18 | ||
| 3sjz_A | 409 | The Structure Of Aif2gamma Subunit Delta 41-45 From | 2e-18 | ||
| 1zun_B | 434 | Crystal Structure Of A Gtp-Regulated Atp Sulfurylas | 1e-15 | ||
| 1jqs_C | 68 | Fitting Of L11 Protein And Elongation Factor G (Dom | 1e-11 | ||
| 2lkc_A | 178 | Free B.St If2-G2 Length = 178 | 2e-09 | ||
| 3izy_P | 537 | Mammalian Mitochondrial Translation Initiation Fact | 2e-08 | ||
| 1zo1_I | 501 | If2, If1, And Trna Fitted To Cryo-Em Data Of E. Col | 9e-08 | ||
| 2elf_A | 370 | Crystal Structure Of The Selb-Like Elongation Facto | 5e-07 | ||
| 3dwu_A | 46 | Transition-State Model Conformation Of The Switch I | 1e-06 | ||
| 1g7r_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 2e-06 | ||
| 1g7r_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 7e-04 | ||
| 1g7s_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 3e-06 | ||
| 1g7s_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 8e-04 | ||
| 2hcj_A | 37 | "trypsin-Modified Elongation Factor Tu In Complex W | 4e-06 |
| >pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex With Argyrin B Length = 709 | Back alignment and structure |
|
| >pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex With Argyrin B Length = 709 | Back alignment and structure |
|
| >pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And The E. Coli Elongation Factor G Bound To The E. Coli Post-Termination Complex Length = 702 | Back alignment and structure |
|
| >pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And The E. Coli Elongation Factor G Bound To The E. Coli Post-Termination Complex Length = 702 | Back alignment and structure |
|
| >pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 704 | Back alignment and structure |
|
| >pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 704 | Back alignment and structure |
|
| >pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without Nucleotide Length = 691 | Back alignment and structure |
|
| >pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without Nucleotide Length = 691 | Back alignment and structure |
|
| >pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With Gdp, At 2.7 Angstroms Resolution Length = 691 | Back alignment and structure |
|
| >pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With Gdp, At 2.7 Angstroms Resolution Length = 691 | Back alignment and structure |
|
| >pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex Length = 691 | Back alignment and structure |
|
| >pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex Length = 691 | Back alignment and structure |
|
| >pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation Length = 688 | Back alignment and structure |
|
| >pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation Length = 688 | Back alignment and structure |
|
| >pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant G16v Length = 691 | Back alignment and structure |
|
| >pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant G16v Length = 691 | Back alignment and structure |
|
| >pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a Length = 691 | Back alignment and structure |
|
| >pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a Length = 691 | Back alignment and structure |
|
| >pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant T84a Length = 691 | Back alignment and structure |
|
| >pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant T84a Length = 691 | Back alignment and structure |
|
| >pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped With A Gtp Analogue Length = 691 | Back alignment and structure |
|
| >pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped With A Gtp Analogue Length = 691 | Back alignment and structure |
|
| >pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From Staphylococcus Aureus With A Fusidic Acid Hyper-Sensitivity Mutation M16i Length = 693 | Back alignment and structure |
|
| >pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From Staphylococcus Aureus With A Fusidic Acid Hyper-Sensitivity Mutation M16i Length = 693 | Back alignment and structure |
|
| >pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G Length = 693 | Back alignment and structure |
|
| >pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G Length = 693 | Back alignment and structure |
|
| >pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With Mutations M16i And F88l Length = 693 | Back alignment and structure |
|
| >pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With Mutations M16i And F88l Length = 693 | Back alignment and structure |
|
| >pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With A Fusidic-Acid-Resistant Mutation F88l Length = 693 | Back alignment and structure |
|
| >pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With A Fusidic-Acid-Resistant Mutation F88l Length = 693 | Back alignment and structure |
|
| >pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678 | Back alignment and structure |
|
| >pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289 | Back alignment and structure |
|
| >pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Length = 394 | Back alignment and structure |
|
| >pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli Length = 393 | Back alignment and structure |
|
| >pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 Length = 394 | Back alignment and structure |
|
| >pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna Length = 393 | Back alignment and structure |
|
| >pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp) Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic Length = 393 | Back alignment and structure |
|
| >pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 385 | Back alignment and structure |
|
| >pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The 50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf Length = 655 | Back alignment and structure |
|
| >pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex Length = 405 | Back alignment and structure |
|
| >pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin With The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From Thermus Aquaticus In The Gtp Conformation Length = 405 | Back alignment and structure |
|
| >pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Ge2270 A Length = 405 | Back alignment and structure |
|
| >pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Pulvomycin Length = 405 | Back alignment and structure |
|
| >pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation Factor Tu (Ef-Tu) In Complex With The Gtp Analogue Gppnhp. Length = 405 | Back alignment and structure |
|
| >pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 405 | Back alignment and structure |
|
| >pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 1 Of 4). Length = 406 | Back alignment and structure |
|
| >pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The Amino Acids Homologous To Ras Oncogene Proteins Length = 379 | Back alignment and structure |
|
| >pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With Tetracycline At 2.8 Angstrom Resolution Length = 335 | Back alignment and structure |
|
| >pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With Tetracycline" Length = 335 | Back alignment and structure |
|
| >pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp Length = 397 | Back alignment and structure |
|
| >pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 409 | Back alignment and structure |
|
| >pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus Hb8 Length = 665 | Back alignment and structure |
|
| >pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus Hb8 Length = 665 | Back alignment and structure |
|
| >pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 | Back alignment and structure |
|
| >pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 | Back alignment and structure |
|
| >pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435 | Back alignment and structure |
|
| >pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 437 | Back alignment and structure |
|
| >pdb|3VMF|A Chain A, Archaeal Protein Length = 440 | Back alignment and structure |
|
| >pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3 Length = 548 | Back alignment and structure |
|
| >pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3 Length = 548 | Back alignment and structure |
|
| >pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 458 | Back alignment and structure |
|
| >pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3 Length = 529 | Back alignment and structure |
|
| >pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3 Length = 529 | Back alignment and structure |
|
| >pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) Length = 534 | Back alignment and structure |
|
| >pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) Length = 534 | Back alignment and structure |
|
| >pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482 | Back alignment and structure |
|
| >pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From Coxiella Burnetii Length = 528 | Back alignment and structure |
|
| >pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From Coxiella Burnetii Length = 528 | Back alignment and structure |
|
| >pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 439 | Back alignment and structure |
|
| >pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi-G235d Mutant Length = 410 | Back alignment and structure |
|
| >pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Complexed With Gdp-Mg2+ Length = 410 | Back alignment and structure |
|
| >pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 419 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35 Length = 467 | Back alignment and structure |
|
| >pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Length = 410 | Back alignment and structure |
|
| >pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 592 | Back alignment and structure |
|
| >pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha- Gamma Heterodimer From Sulfolobus Solfataricus Complexed With Gdpnp Length = 414 | Back alignment and structure |
|
| >pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 415 | Back alignment and structure |
|
| >pdb|1S0U|A Chain A, Eif2gamma Apo Length = 408 | Back alignment and structure |
|
| >pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 | Back alignment and structure |
|
| >pdb|3CB4|D Chain D, The Crystal Structure Of Lepa Length = 599 | Back alignment and structure |
|
| >pdb|3CB4|D Chain D, The Crystal Structure Of Lepa Length = 599 | Back alignment and structure |
|
| >pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And Ef4(Lepa)- Gmppnp Length = 545 | Back alignment and structure |
|
| >pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And Ef4(Lepa)- Gmppnp Length = 545 | Back alignment and structure |
|
| >pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A Translating Ribosome Length = 611 | Back alignment and structure |
|
| >pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 | Back alignment and structure |
|
| >pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit Delta 37-47 From Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 403 | Back alignment and structure |
|
| >pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From Archaeon Sulfolobus Solfataricus Complexed With Gdp And Gdpnp Length = 409 | Back alignment and structure |
|
| >pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae Length = 434 | Back alignment and structure |
|
| >pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G' And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog Length = 68 | Back alignment and structure |
|
| >pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178 | Back alignment and structure |
|
| >pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2 Length = 537 | Back alignment and structure |
|
| >pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s Initiation Complex Length = 501 | Back alignment and structure |
|
| >pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor Ef-Pyl From Methanosarcina Mazei Length = 370 | Back alignment and structure |
|
| >pdb|3DWU|A Chain A, Transition-State Model Conformation Of The Switch I Region Fitted Into The Cryo-Em Map Of The Eef2.80s.Alf4.Gdp Complex Length = 46 | Back alignment and structure |
|
| >pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Length = 594 | Back alignment and structure |
|
| >pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Length = 594 | Back alignment and structure |
|
| >pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594 | Back alignment and structure |
|
| >pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594 | Back alignment and structure |
|
| >pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With Tetracycline" Length = 37 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 | Back alignment and structure |
|---|
Score = 938 bits (2428), Expect = 0.0
Identities = 295/662 (44%), Positives = 444/662 (67%), Gaps = 19/662 (2%)
Query: 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV 66
RNIGI+AH+DAGKTTTTERIL+Y+G HKIGE H G + DWM+QEQ+RGITITSA+
Sbjct: 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAAT 68
Query: 67 SIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ 126
+ WE + +NIIDTPGHVDFT+EVERSLRVLDGAV ++ A SG++PQTETVW Q+
Sbjct: 69 TAAWE----GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 127 KYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSF 186
Y VP+++FVNKMD++GAN+ + + + PI IG E+ +E I+D++ K F
Sbjct: 125 TYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCF 184
Query: 187 FWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDIKNSI 242
+ + I I +D L + ++E ++ + +EKY+ + S++++K +I
Sbjct: 185 KYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAI 244
Query: 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV------DFKNNDYNINLNSN 296
R+ + P++CG++ KNKG++ +L+++ +YLPSP DV N + + ++
Sbjct: 245 RQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKAD 304
Query: 297 ---KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKK 353
+F +L FK+ DP++G L+F R+YSG + G V NSTK +E++ R+L+M ANS++
Sbjct: 305 DSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQ 364
Query: 354 DINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLL 413
+I+ + GDI VGLK++ TGDTLC +I LE++E P PVI +S+EP K DQ+K+
Sbjct: 365 EIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMT 424
Query: 414 NILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKE 473
L K +EDP+ + TG+ I+ GMGELHL+I+VDR+ KE N++ + P VSY+E
Sbjct: 425 QALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRE 484
Query: 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIE 533
+ K +GK+ +QSGG+GQYG V I P E F F++ I+GG +P+E+IP++E
Sbjct: 485 TFKSSAQVQGKFSRQSGGRGQYGDVHIEFTP--NETGAGFEFENAIVGGVVPREYIPSVE 542
Query: 534 KGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILE 593
G+ + + GV+ GYP+I +K L +GS+H VDSSE AFK AA++ALK+A KK + ILE
Sbjct: 543 AGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILE 602
Query: 594 PIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNT 653
P+MKV + +P E++G ++GD+ +RG ++ + N +++N+Y+PL E+FGY+T LRSNT
Sbjct: 603 PMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNT 662
Query: 654 KG 655
+G
Sbjct: 663 QG 664
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 7e-06
Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFD---TIDNAPEEKERGITISTSHVE 708
G + H+D GKTT T + T +I GE + +D +E++RGITI TS
Sbjct: 14 GIMAHIDAGKTTTTERILYYTGRIHKI--GETH--EGASQMDWMEQEQDRGITI-TSAAT 68
Query: 709 YESENKHYAHV-DCPGHADYIKNMITGAAQ-----MDGAILVCSAVDGPMPQT----REH 758
+ H ++ D PGH D+ T + +DGA+ V A G PQT R
Sbjct: 69 TAAWEGHRVNIIDTPGHVDF-----TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-- 121
Query: 759 ILLARQVGVPNIVVFLNKAD 778
A GVP I VF+NK D
Sbjct: 122 --QATTYGVPRI-VFVNKMD 138
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Length = 691 | Back alignment and structure |
|---|
Score = 933 bits (2413), Expect = 0.0
Identities = 310/661 (46%), Positives = 451/661 (68%), Gaps = 18/661 (2%)
Query: 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV 66
RNIGI AH+DAGKTTTTERIL+Y+G HKIGEVH G D+M+QE+ERGITIT+A
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 67 SIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ 126
+ FW+ + INIIDTPGHVDFTIEVERS+RVLDGA+++ +S G++PQ+ETVW Q++
Sbjct: 71 TCFWK----DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 127 KYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSF 186
KYKVP++ F NKMD+ GA+ I ++++ + + IG E+ + GI+D++ K++
Sbjct: 127 KYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAY 186
Query: 187 FWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSI 242
+ + I I ++ L Y+E ++E ++ DE + KY+ + ++ +I
Sbjct: 187 TYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAI 246
Query: 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV------DFKNNDYNINLNSN 296
RK + KI P+ GS+LKNKG++ LL+++ +YLPSP D+ + I+ + N
Sbjct: 247 RKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPN 306
Query: 297 -KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDI 355
+L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+LRM AN ++++
Sbjct: 307 GPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEV 366
Query: 356 NDAHFGDIVVIVGLKESSTGDTLCSLSE-NIQLENIETPIPVISISIEPIFKNDQEKLLN 414
+ GD+ +VGLKE+ TGDTL + LE+IE P PVI ++IEP K DQEKL
Sbjct: 367 EELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQ 426
Query: 415 ILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKES 474
L + +EDP+ +S + TG+TI+SGMGELHLEIIVDR+ +E + + KPQV+Y+E+
Sbjct: 427 ALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRET 486
Query: 475 IKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEK 534
I K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG IPKE+IPA++K
Sbjct: 487 ITKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVIPKEYIPAVQK 544
Query: 535 GIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEP 594
GI + G ++G+PV+ IKV L +GS+H VDSSE AFK A ++A+K+A++K + ILEP
Sbjct: 545 GIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 604
Query: 595 IMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTK 654
IM+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FGY+TDLRS T+
Sbjct: 605 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 664
Query: 655 G 655
G
Sbjct: 665 G 665
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Length = 691 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 8e-06
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 31/140 (22%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFD---TIDNAPEEKERGITISTSHVE 708
G H+D GKTT T + T +I GEV + T+D +E+ERGITI T+ V
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKI--GEVH--EGAATMDFMEQERERGITI-TAAVT 70
Query: 709 YESENKHYAHV-DCPGHADYIKNMITGAAQ-----MDGAILVCSAVDGPMPQT----REH 758
H ++ D PGH D+ T + +DGAI+V + G PQ+ R+
Sbjct: 71 TCFWKDHRINIIDTPGHVDF-----TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ- 124
Query: 759 ILLARQVGVPNIVVFLNKAD 778
A + VP I F NK D
Sbjct: 125 ---AEKYKVPRI-AFANKMD 140
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 | Back alignment and structure |
|---|
Score = 929 bits (2404), Expect = 0.0
Identities = 318/668 (47%), Positives = 449/668 (67%), Gaps = 19/668 (2%)
Query: 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV 66
+RNIGI AH+DAGKTTTTERILFY+G +HKIGEVH G DWM+QEQERGITITSA+
Sbjct: 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAAT 68
Query: 67 SIFW---EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF 123
+ FW + INIIDTPGHVDFTIEVERS+RVLDGAV++ CA G+QPQ+ETVW
Sbjct: 69 TAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128
Query: 124 QSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINK 183
Q+ KYKVP++ FVNKMDR+GAN+ + IK + +P+ IG EE++ G+VD++
Sbjct: 129 QANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKM 188
Query: 184 KSFFWKENS----IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDI 238
K+ W + ++I D + + +++ ++E+ + E +EKY+ + +I
Sbjct: 189 KAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEI 248
Query: 239 KNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV------DFKNNDYNIN 292
K ++R+ VL N+II + CGS+ KNKG++ +L+++ +YLPSP DV D
Sbjct: 249 KGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAE 308
Query: 293 LNSN---KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFA 349
+++ F +L FKI DPF+G+L+F R+YSG + GD V NS K +E+ RI++M A
Sbjct: 309 RHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHA 368
Query: 350 NSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQ 409
N +++I + GDI +GLK+ +TGDTLC I LE +E P PVISI++EP K DQ
Sbjct: 369 NKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQ 428
Query: 410 EKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQV 469
EK+ L + KEDPS + + + +TI++GMGELHL+IIVDR+ +E N++ + KPQV
Sbjct: 429 EKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQV 488
Query: 470 SYKESIKKIVTQ-EGKYIKQSGGKGQYGHVVIRIEPI-SLENKENFIFKSEIIGGSIPKE 527
+Y+E+I++ VT EGK+ KQSGG+GQYGHVVI + P+ N + + F ++I GG IP E
Sbjct: 489 AYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGE 548
Query: 528 FIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKA 587
+IPA++KGI Q+ G + GYPV+ + + L GS+H VDSSE AFK AA+IA K+ KKA
Sbjct: 549 YIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKA 608
Query: 588 NSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYST 647
+LEPIMKVEV P E G V+GD++++RG++ I++ +PL E+FGY+T
Sbjct: 609 KPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYAT 668
Query: 648 DLRSNTKG 655
LRS TKG
Sbjct: 669 QLRSLTKG 676
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 4e-06
Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 36/146 (24%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFD---TIDNAPEEKERGITIS----T 704
G H+D GKTT T + T V+ +I GEV D T+D +E+ERGITI+ T
Sbjct: 14 GISAHIDAGKTTTTERILFYTGVNHKI--GEVH--DGAATMDWMEQEQERGITITSAATT 69
Query: 705 SHVEYESENKHYAHV---DCPGHADYIKNMITGAAQ-----MDGAILVCSAVDGPMPQT- 755
+ ++ + D PGH D+ T + +DGA++V AV G PQ+
Sbjct: 70 AFWSGMAKQYEPHRINIIDTPGHVDF-----TIEVERSMRVLDGAVMVYCAVGGVQPQSE 124
Query: 756 ---REHILLARQVGVPNIVVFLNKAD 778
R+ A + VP I F+NK D
Sbjct: 125 TVWRQ----ANKYKVPRI-AFVNKMD 145
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 | Back alignment and structure |
|---|
Score = 907 bits (2347), Expect = 0.0
Identities = 186/659 (28%), Positives = 338/659 (51%), Gaps = 28/659 (4%)
Query: 1 MKNKVL-YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGI 59
M + R + ++ H +GKTT TE +L+ +G+ + G V GTT TD+ + +
Sbjct: 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRT 60
Query: 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE 119
T+ + + + + + ++D PG+ DF E+ +L D A++ + A +G+Q TE
Sbjct: 61 TVRTGVAPLLFR----GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE 116
Query: 120 TVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVD 179
W +++ +P+M+ V K+D+ G +Y + D++ I+ PI+ + + G++D
Sbjct: 117 RAWTVAERLGLPRMVVVTKLDK-GGDYYALLEDLRSTLGPIL-PIDLPLYEGGKWVGLID 174
Query: 180 IINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDI 238
+ + K++ ++ + ++ + + +LE + DE LEKY+ + +
Sbjct: 175 VFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEAL 234
Query: 239 KNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKF 298
+ + + V + + P+ S + G+ LL I E LPSP +
Sbjct: 235 EKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERF----------GDGPP 284
Query: 299 VSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDA 358
++ VFK+ DPF+G ++++R+Y G +K GD + + + ++ + ++ +A
Sbjct: 285 LAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQ--VRLPHLYVPMGKDLLEVEEA 342
Query: 359 HFGDIVVIVGLKESSTGDTLCSLSENIQLE--NIETPIPVISISIEPIFKNDQEKLLNIL 416
G ++ + + G L + E P P + +++ P + D+ +L L
Sbjct: 343 EAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALHPKGRTDEARLGEAL 402
Query: 417 QKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIK 476
+K +EDPSL L TGE +L G GELHL +R L++ ++ + S P+V Y+E+IK
Sbjct: 403 RKLLEEDPSLKLERQEETGELLLWGHGELHLATAKER-LQDYGVEVEFSVPKVPYRETIK 461
Query: 477 KIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGI 536
K+ +GKY KQ+GG GQYG V +R+EP + F+ I GG IP ++ AIE+GI
Sbjct: 462 KVAEGQGKYKKQTGGHGQYGDVWLRLEPA-----SEYGFEWRITGGVIPSKYQEAIEEGI 516
Query: 537 MNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIM 596
GV+ G+PV+ K + NGS+H VDSS+ AF+ AA++A K + +A+ +LEPI
Sbjct: 517 KEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIY 576
Query: 597 KVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
+++V P E +G V+ D+ +RG I + ++++ +PL E+ Y L T G
Sbjct: 577 RLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALPGLTGG 635
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-13
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFD---TIDNAPEEKERGITISTSHVE 708
+GH GKTTLT AL T G V + T D PE K T+ T
Sbjct: 13 ALVGHAGSGKTTLTEALLYKTGAKERR--GRVE--EGTTTTDYTPEAKLHRTTVRTGVAP 68
Query: 709 YESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVP 768
+D PG+ D++ + D A++ SA G T +A ++G+P
Sbjct: 69 LLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP 128
Query: 769 NIVVFLNKAD 778
+ V + K D
Sbjct: 129 RM-VVVTKLD 137
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397 | Back alignment and structure |
|---|
Score = 765 bits (1979), Expect = 0.0
Identities = 207/367 (56%), Positives = 279/367 (76%), Gaps = 1/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+TK+ +E G + + ++ IDNAPEE+ RGITI+ +HVEY + +
Sbjct: 7 GTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAH DCPGHADY+KNMITG A +DG ILV +A DGPMPQTREH+LLARQ+GV ++VV++
Sbjct: 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYV 126
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NKAD VQD E+++LVE+EIRELLTE+ + GE T I++GSAL ALE +D LG S++KL
Sbjct: 127 NKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPE-LGLKSVQKL 185
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LD +D+ IP P R +KPFL+P+E V+SI GRGTVVTG +ERGI+K G+E E +G+ + I
Sbjct: 186 LDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNI 245
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
+T +TGIEMF K+LD AG+N+G L+R +KRE++ RG V+AK GSI+ + E +VYIL
Sbjct: 246 RTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYIL 305
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
+KEEGGRH PF + + P + T D+ LP E+ +PG+++KL + L + +E G
Sbjct: 306 TKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKG 365
Query: 1015 LRFAIRE 1021
RF +R+
Sbjct: 366 QRFTLRD 372
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 4e-10
Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T I + + I D +E+ RGITI +A V
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKIL-AEGGGAKFKKYEEI-DNAPEERARGITINAAHVE-- 60
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRV---------LDGAVIIICASSGIQPQT-E 119
+ Y D PGH D+ V LDG ++++ A+ G PQT E
Sbjct: 61 YSTAARHYA--HTDCPGHADY---------VKNMITGTAPLDGCILVVAANDGPMPQTRE 109
Query: 120 TVWFQSQKYKVPKMI-FVNKMD 140
+ Q V ++ +VNK D
Sbjct: 110 HLLLARQ-IGVEHVVVYVNKAD 130
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 759 bits (1963), Expect = 0.0
Identities = 250/376 (66%), Positives = 293/376 (77%), Gaps = 9/376 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGG-EVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V++ EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-------QL 826
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE N
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 827 GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886
I +LLD +D IPTP R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+E
Sbjct: 195 WVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 254
Query: 887 IVGYKQ-TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYN 945
IVG T KT +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 255 IVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHT 314
Query: 946 IFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTL 1005
FE VY+L KEEGGRHT FF+GY+PQFYFRTTDVTG+ +LP VEMV+PGDN+ V L
Sbjct: 315 KFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVEL 374
Query: 1006 LSSIAIEIGLRFAIRE 1021
+ +A+E GLRFAIRE
Sbjct: 375 IKPVALEEGLRFAIRE 390
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 26/142 (18%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + + EV I D +E+ RGITI +A V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI-DKAPEERARGITINTAHVE-- 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRV---------LDGAVIIICASSGIQPQT-E 119
+E K Y +D PGH D+ + +DGA++++ A+ G PQT E
Sbjct: 70 YETAKRHYS--HVDCPGHADY---------IKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 120 TVWFQSQKYKVPKMI-FVNKMD 140
+ Q VP ++ F+NK+D
Sbjct: 119 HILLARQ-VGVPYIVVFMNKVD 139
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 | Back alignment and structure |
|---|
Score = 783 bits (2023), Expect = 0.0
Identities = 268/367 (73%), Positives = 309/367 (84%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ YGG RAFD IDNAPEEK RGITI+TSHVEY++ +
Sbjct: 300 GTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 359
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP I+VFL
Sbjct: 360 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 419
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL ALEG + I +L
Sbjct: 420 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE---WEAKILEL 476
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T
Sbjct: 477 AGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQ 536
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK G+IK + FE EVYIL
Sbjct: 537 KSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYIL 596
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDNIK+ VTL+ IA++ G
Sbjct: 597 SKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDG 656
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 657 LRFAIRE 663
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 2e-10
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 37/147 (25%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQ-----QEQERGITITSA 64
N+G I HVD GKTT T I + +G + Q +E+ RGITI ++
Sbjct: 298 NVGTIGHVDHGKTTLTAAIT-------TVLAKTYGGAARAFDQIDNAPEEKARGITINTS 350
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRV---------LDGAVIIICASSGIQ 115
V ++ Y +D PGH D+ V +DGA++++ A+ G
Sbjct: 351 HVE--YDTPTRHYA--HVDCPGHADY---------VKNMITGAAQMDGAILVVAATDGPM 397
Query: 116 PQT-ETVWFQSQKYKVPKMI-FVNKMD 140
PQT E + Q VP +I F+NK D
Sbjct: 398 PQTREHILLGRQ-VGVPYIIVFLNKCD 423
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370 | Back alignment and structure |
|---|
Score = 551 bits (1423), Expect = 0.0
Identities = 70/369 (18%), Positives = 152/369 (41%), Gaps = 16/369 (4%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
G+ H H + L + +++ G ++ T A ++G + + + E +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMANVAIIGTEKSGRT-SLAANLGKKGTSSDITMYNNDKEGR 60
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
+ VD + +K++IT D A+L G T E I+ +G + ++ L
Sbjct: 61 NMVFVDAHSYPKTLKSLITALNISDIAVLCIPP-QGLDAHTGECIIALDLLGFKHGIIAL 119
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
++D +D ++ +++ + + + + + + + + G +K
Sbjct: 120 TRSDST-HMHAIDELKAKLKVITSGTVLQD--WECISLNTNKSAKNPFE---GVDELKAR 173
Query: 835 LDVLDSSIPTPNRITDK-PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQT 893
++ + I N + P + I+ F+++G+G VV G +++GI K+ ++ +I +
Sbjct: 174 INEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDR- 232
Query: 894 IKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYI 953
I I+ +D AG VG+ L++V+ +++ERG +++ + + EC V
Sbjct: 233 -DIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISDKEIVTTDYTLECTVSK 291
Query: 954 LSKE-EGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIE 1012
+K+ E F G + + V I VE PG L ++ +A
Sbjct: 292 FTKKIEPASVLHLFVGLQSE----PVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYS 347
Query: 1013 IGLRFAIRE 1021
RF +
Sbjct: 348 KQDRFLLAN 356
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 21/145 (14%), Positives = 37/145 (25%), Gaps = 37/145 (25%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSH----KIGEVHHGTTITDWMQQEQERGITITSASV 66
+G H + R GS IG G T ++G +
Sbjct: 1 MGSSHHHHHHSSGLVPR-----GSHMANVAIIGTEKSGR--TSLAANLGKKGTSSDIT-- 51
Query: 67 SIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRV---------LDGAVIIICASSGIQPQ 117
+ +K + +D + + D AV+ I G+
Sbjct: 52 --MYNNDKEGRNMVFVDAHSYPKT---------LKSLITALNISDIAVLCI-PPQGLDAH 99
Query: 118 T-ETVWFQSQKYKVPKMI-FVNKMD 140
T E + I + + D
Sbjct: 100 TGECIIALDL-LGFKHGIIALTRSD 123
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 540 bits (1392), Expect = 0.0
Identities = 103/384 (26%), Positives = 177/384 (46%), Gaps = 51/384 (13%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
G GH+DHGKTTL+ LT+++S D PE ++RGITI ++ EN
Sbjct: 23 GIFGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLENY 73
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
VD PGHAD I+ +++ A +D A++V A +GP QT EH+L+ +P IVV +
Sbjct: 74 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVV-I 132
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
K+D E + EM ++ +L + +N+ I+ SA + +L
Sbjct: 133 TKSDNA-GTEEIKRTEMIMKSILQST-HNLKNSSIIPISAKTGFG-----------VDEL 179
Query: 835 LDVLDSSI--PTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQ 892
+++ +++ R T+ F MP++ F I G GTVVTG I +GIVK G+E++++
Sbjct: 180 KNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINM 239
Query: 893 TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIFECEV 951
T + I+ FK+++ E AG+ VG+ ++ V +++ RG +L + +++ + ++
Sbjct: 240 --STKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKI 297
Query: 952 YILSKEEGGRHTPFFNGYKPQFYFR----TTDVTGICKL-----------PENVEMVLPG 996
I F P+ V + + V+ G
Sbjct: 298 KISD--------IFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISG 349
Query: 997 DNIKLNVTLLSSIAIEIGLRFAIR 1020
+ L + E+G R I
Sbjct: 350 NEXYXAFELEEKVLAEVGDRVLIT 373
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTI-----TDWMQQEQERGITITSA 64
N+GI H+D GKTT ++ + T I D + + Q+RGITI
Sbjct: 21 NLGIFGHIDHGKTTLSKVL----------------TEIASTSAHDKLPESQKRGITIDIG 64
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWF 123
+ E Y I ++D PGH D V + ++D A+I++ A G + QT E +
Sbjct: 65 FSAFKLE----NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLI 120
Query: 124 QSQKYKVPKMIFVNKMD 140
+ +P ++ + K D
Sbjct: 121 LDH-FNIPIIVVITKSD 136
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403 | Back alignment and structure |
|---|
Score = 519 bits (1340), Expect = e-177
Identities = 92/397 (23%), Positives = 156/397 (39%), Gaps = 55/397 (13%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAF---DTIDNAPEEKERGITISTSHVEYES 711
G +GHVDHGKTTL A+T + + G PE + + + E
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP 71
Query: 712 ENK-HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLARQVGVPN 769
+ + +D PGH + M++GAA MDGAILV +A + P PQTREH + +GV N
Sbjct: 72 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKN 131
Query: 770 IVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTT 829
+++ NK D V +E L + EN I+ SAL +
Sbjct: 132 LIIVQNKVDVVSKEEALSQYRQIKQFT---KGTWAENVPIIPVSALHKIN---------- 178
Query: 830 SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG--------RGTVVTGKIERGIVKN 881
I L++ ++ I TP R + +M + F ++ +G V+ G I +G+ K
Sbjct: 179 -IDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKV 237
Query: 882 GEEIEIVGYKQT----------IKTTITGIEMFKKTLDEGLAGENVGI---LLRSVKREE 928
+EI+++ + I T I+ I + E G V I L S+ + +
Sbjct: 238 DQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKAD 297
Query: 929 VERGQVLAKIGS-IKSYNIFECEVYILSK----EEGGRHTPFFNGYKPQFYFRTTDVTGI 983
G ++ + + + +L + +E + P ++ G
Sbjct: 298 NLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLG- 356
Query: 984 CKLPENVEMVLPGDNIKLNVTLLSSIAIEIG-LRFAI 1019
+V ++ V L +A+ +R I
Sbjct: 357 --------IVTSVKKDEIEVELRRPVAVWSNNIRTVI 385
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG--SSHKIGEVHHGTTITDWMQ--QEQERGITITSAS 65
NIG++ HVD GKTT + I +G +S K+G + + + + + S
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCG 66
Query: 66 VSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQ 124
+ KF I+ ID PGH + ++DGA++++ A+ QPQT +
Sbjct: 67 SD---DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVA 123
Query: 125 SQKYKVPKM-IFVNKMD 140
V + I NK+D
Sbjct: 124 LGIIGVKNLIIVQNKVD 140
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410 | Back alignment and structure |
|---|
Score = 507 bits (1308), Expect = e-172
Identities = 111/418 (26%), Positives = 168/418 (40%), Gaps = 87/418 (20%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN- 713
G +GHVDHGKTTLT ALT V + D EE RGITI + E
Sbjct: 14 GMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIGFADAEIRRC 60
Query: 714 ----------------------KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG- 750
+ + +D PGH + M+ GA+ MDGAILV +A +
Sbjct: 61 PNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC 120
Query: 751 PMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810
P PQTREH++ + +G NI++ NK + V ++ L+ + EN I+
Sbjct: 121 PRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE---GTVAENAPII 177
Query: 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT-- 868
SAL I L+ ++ IPTP R +KP M + F ++ GT
Sbjct: 178 PISALHGAN-----------IDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPP 226
Query: 869 ------VVTGKIERGIVKNGEEIEIVGYK----------QTIKTTITGIEMFKKTLDEGL 912
V+ G I +G +K G+EIEI + I T I ++ + ++E
Sbjct: 227 EKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAY 286
Query: 913 AGENVGI---LLRSVKREEVERGQVLAKIGSIK-SYNIFECEVYILSKEEGGRH----TP 964
G VG+ L + + ++ G V+ K G + ++ EV++L + G P
Sbjct: 287 PGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEP 346
Query: 965 FFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAI-RE 1021
T G +V ++ V L + E G R AI R+
Sbjct: 347 IKRKEVLLLNVGTARTMG---------LVTGLGKDEIEVKLQIPVCAEPGDRVAISRQ 395
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 55/222 (24%), Positives = 79/222 (35%), Gaps = 75/222 (33%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV--S 67
NIG++ HVD GKTT T+ + +G TD +E RGITI
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TG------------VWTDTHSEELRRGITIKIGFADAE 56
Query: 68 IFWEVNKFKYMIN-----------------IIDTPGHVDFTIEVERSLR---VLDGAVII 107
I N +Y + ID PGH + L ++DGA+++
Sbjct: 57 IRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEAL---MTTMLAGASLMDGAILV 113
Query: 108 ICASSGI-QPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165
I A+ +PQT Q + I NK++ ++D +K
Sbjct: 114 IAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIE---------LVDKEK---------- 154
Query: 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIK-------NIDK 200
ENY I + I EN+ II NID
Sbjct: 155 ----ALENYRQIKEFIEG---TVAENAPIIPISALHGANIDV 189
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408 | Back alignment and structure |
|---|
Score = 496 bits (1279), Expect = e-167
Identities = 110/415 (26%), Positives = 160/415 (38%), Gaps = 86/415 (20%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN- 713
G +GHVDHGKT+LT ALT V + D EE RGI+I + + E
Sbjct: 12 GMVGHVDHGKTSLTKALTGVWT-------------DRHSEELRRGISIRLGYADCEIRKC 58
Query: 714 ----------------------KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG- 750
+ + VD PGH + M++GA+ MDGAILV +A +
Sbjct: 59 PQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC 118
Query: 751 PMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810
P PQT+EH++ +G+ I++ NK D V +K+ + E + EN I+
Sbjct: 119 PQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK---GTIAENAPII 175
Query: 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT-- 868
SA +I LL + IPTP R D M + F I+ GT
Sbjct: 176 PISAHHEA-----------NIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEI 224
Query: 869 ------VVTGKIERGIVKNGEEIEI-VGYK---------QTIKTTITGIEMFKKTLDEGL 912
V+ G I +G+ K G+EIEI G K + + T I + L +
Sbjct: 225 KDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAH 284
Query: 913 AGENVGI---LLRSVKREEVERGQVLAKIGSIK-SYNIFECEVYILSKEEGGRH----TP 964
G +G+ L + + + G V+ G++ +L + G + P
Sbjct: 285 PGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEP 344
Query: 965 FFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAI 1019
G T G V GD + L I EIG R AI
Sbjct: 345 LRTGEVLMLNIGTATTAG-------VITSARGDIAD--IKLKLPICAEIGDRVAI 390
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 53/219 (24%), Positives = 84/219 (38%), Gaps = 69/219 (31%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI-------- 61
NIG++ HVD GKT+ T+ + +G TD +E RGI+I
Sbjct: 10 NIGMVGHVDHGKTSLTKAL---TG------------VWTDRHSEELRRGISIRLGYADCE 54
Query: 62 -----------TSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICA 110
T +F ++ +D+PGH + ++DGA+++I A
Sbjct: 55 IRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAA 114
Query: 111 SSGI-QPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNI 168
+ QPQT+ + + K+ I NK+D ++D K+
Sbjct: 115 NEPCPQPQTKEHLMALEILGIDKIIIVQNKID---------LVDEKQ------------- 152
Query: 169 GIEENYEGIVDIINKKSFFWKENSIIIK-------NIDK 200
EENYE I + + EN+ II NID
Sbjct: 153 -AEENYEQIKEFVKG---TIAENAPIIPISAHHEANIDV 187
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 423 bits (1089), Expect = e-134
Identities = 165/778 (21%), Positives = 304/778 (39%), Gaps = 138/778 (17%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RN+ +IAHVD GK+T T+ ++ +G TD + EQERGITI S ++S+
Sbjct: 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGE--ARFTDTRKDEQERGITIKSTAISL 77
Query: 69 FWEVNK------------FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
+ E++ ++IN+ID+PGHVDF+ EV +LRV DGA++++ G+
Sbjct: 78 YSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCV 137
Query: 117 QTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF---------- 166
QTETV Q+ ++ ++ +NK+DR D+ + F V +N
Sbjct: 138 QTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVL 197
Query: 167 ----------NIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLET 216
+ G I + + + + + K D+L ++N +
Sbjct: 198 GDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKW 257
Query: 217 LSNND------------EFFLEK-YINNNYSINDIKNSIRKLVLKNKII----------- 252
+ + F L+ + +N K+ I L+ K +I+
Sbjct: 258 TNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGK 317
Query: 253 PIMCGSSLKNKGI-EFLLNSICEYLPSPYDVDFK--NNDYNINLNSN------------K 297
++ K + LL I +LPSP Y +
Sbjct: 318 ALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKAD 377
Query: 298 FVSLVFKIFHDPFLGS-LSFIRIYSGFIKVGDLVY---------NSTKKVKEKIFRILRM 347
+ V K+ G +F R+++G +K G V + I R++ M
Sbjct: 378 LMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLM 437
Query: 348 FANSKKDINDAHFGDIVVIVGLKESSTGD-TLCSLSENIQLENIETPI-PVISISIEPIF 405
+ I+D G+I+ +VG+ + TL + ++ ++ + PV+ +++E
Sbjct: 438 MGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKN 497
Query: 406 KNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKE-NNIKTKI 464
ND KL+ L++ K DP +L + + +GE I++G GELHLEI + + + + KI
Sbjct: 498 ANDLPKLVEGLKRLSKSDPCVLTYM-SESGEHIVAGTGELHLEICLQDLEHDHAGVPLKI 556
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENF----------- 513
S P V+Y+E++ E S ++ + ++ EPI E
Sbjct: 557 SPPVVAYRETV----ESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDF 612
Query: 514 --------------------------------IFKSEIIGGSIPKEFIPAIEKGIMNQIN 541
+ + E ++
Sbjct: 613 KARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATK 672
Query: 542 YGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAI--ALKDALKKANSYILEPIMKVE 599
G + G + ++V +++ + H+ + + A A+ I EP+ VE
Sbjct: 673 EGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVE 732
Query: 600 VNLPSEFLGIVVGDINKKRGIINTIIDHEN--FKIINSYIPLRELFGYSTDLRSNTKG 655
+ P + +G + +NKKRG + + + +Y+P+ E FG++ +LR T G
Sbjct: 733 IQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGG 790
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 88.2 bits (218), Expect = 7e-18
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITI-STS-------- 705
I HVDHGK+TLT +L + + I + D +E+ERGITI ST+
Sbjct: 23 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 82
Query: 706 -----HVEYESENKHYA--HVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
++ +++ + +D PGH D+ + DGA++V ++G QT
Sbjct: 83 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 142
Query: 759 ILLARQVGVPNIVVFLNKAD 778
+ A + VV +NK D
Sbjct: 143 LRQALGERIK-PVVVINKVD 161
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 6e-62
Identities = 117/420 (27%), Positives = 196/420 (46%), Gaps = 72/420 (17%)
Query: 657 IGHVDHGKTTLT---------------AALTKVSSEIYGGEVRAFDTIDNAPEEKERGIT 701
IGHVDHGK+TL + + ++ + +D EE+ERG+T
Sbjct: 12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVT 71
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQ 754
I+ + + +E++ + +D PGH D++KNMITGA+Q D AILV SA G Q
Sbjct: 72 INLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQ 131
Query: 755 TREHILLARQVGVPNIVVFLNKADCVQ---DKELLDLVEMEIRELLTEYDFDGENTKIVI 811
TREHI+LA+ +G+ ++V +NK D + D++ + ++ + + Y F+ + V
Sbjct: 132 TREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVP 191
Query: 812 GSALLALEGKDDNQL----------GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVF 861
A G DN G T L + LD + P + DKP +PI+DV+
Sbjct: 192 VV---APSG--DNITHKSENMKWYNGPT----LEEYLD-QLELPPKPVDKPLRIPIQDVY 241
Query: 862 SISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILL 921
SISG GTV G++E G++K G++I + + + IE +D+ G+N+G +
Sbjct: 242 SISGVGTVPVGRVESGVLKVGDKIVFMPAGKV--GEVRSIETHHTKMDKAEPGDNIGFNV 299
Query: 922 RSVKREEVERGQVL-AKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDV 980
R V++++++RG V+ + F + ++ T NGY P + T V
Sbjct: 300 RGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHP-----TALANGYTPVLHVHTASV 354
Query: 981 TG-----ICKL--------PENVEMVLPGDNIKLNVTLLSSIAIEI-----GL-RFAIRE 1021
+ KL +N + + GD + + + +E L RFA+R+
Sbjct: 355 ACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRD 414
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-13
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGS------------SHKIG-EVHHGTTITDWMQQEQE 56
N+ +I HVD GK+T R+L G + K+G E + D +++E+E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG--- 113
RG+TI F KY IID PGH DF + D A++++ A G
Sbjct: 68 RGVTINLT----FMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 123
Query: 114 ----IQPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYNNCIIDIKKKFNCIV 161
++ QT ++ + ++I VNKMD Y+ +K++ IV
Sbjct: 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD------EKRYKEIV 170
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 3e-59
Identities = 93/420 (22%), Positives = 162/420 (38%), Gaps = 81/420 (19%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIY--GG----EVRAFD---------------TIDNAPEE 695
GHVD GK+T+ + ++ G ++ +D EE
Sbjct: 183 TGHVDSGKSTMLGRI------MFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEE 236
Query: 696 KERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM--- 752
+ RG+T+ + +ES+ K Y D PGH D+I MI GA+ D A+LV +
Sbjct: 237 RARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERG 296
Query: 753 ----PQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEY-----DF 802
QTREH L R +G+ IVV +NK D + ++ EI+ +++++ F
Sbjct: 297 FLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQ----EIKNIVSDFLIKMVGF 352
Query: 803 DGENTKIVIGSALLA--LEGKDDNQL-----GTTSIKKLLDVLDSSIPTPNRITDKPFLM 855
N V SA+ L KD + L G T LL LD + P + KP +
Sbjct: 353 KTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPT----LLSALD-QLVPPEKPYRKPLRL 407
Query: 856 PIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTL-DEGLAG 914
I+DV+ TV G++E G V+ + + V ++ + + +AG
Sbjct: 408 SIDDVYRSPRSVTVT-GRVEAGNVQVNQVLYDVSSQED--AYVKNVIRNSDPSSTWAVAG 464
Query: 915 ENVGILLRSVKREEVERGQVLAKIG-SIKSYNIFECEVYILSKEEGGRH-TPFFNGYKPQ 972
+ V + L ++ ++ G +L+ ++ F E+ P +G
Sbjct: 465 DTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQTFD------IHGPILSGSTLV 518
Query: 973 FYFRTTDVTGICKLPE----NVEMVLPGDNIKLNVTLLS-SIAIEI-------GLRFAIR 1020
+ T + K+ + + ++ L + + G RF +R
Sbjct: 519 LHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALG-RFILR 577
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG--SSHKI-------GEVHHGTT----ITDWMQQEQE 56
++ + HVD+GK+T RI+F G +S + G+ + D ++E+
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA 238
Query: 57 RGITITSASVSIFWEVNKF---KYMINIIDTPGHVDF 90
RG+T+ A F K + I D PGH DF
Sbjct: 239 RGVTMDVA-------STTFESDKKIYEIGDAPGHRDF 268
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 1e-58
Identities = 86/393 (21%), Positives = 155/393 (39%), Gaps = 76/393 (19%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIY--GG----EVRAFDT---------------IDNAPEE 695
+GHVD GK+TL L +Y ++R +D EE
Sbjct: 39 LGHVDAGKSTLMGRL------LYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEE 92
Query: 696 KERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM--- 752
+ERG+T+S + + ++ VD PGH D++ N I G +Q D AIL
Sbjct: 93 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 152
Query: 753 ----PQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENT 807
QT+EH+LLA +G+ N+++ +NK D V ++ + ++ ++ L + F +N
Sbjct: 153 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNI 212
Query: 808 KIV-----IGSALLALEGKDDNQL---GTTSIKKLLDVLDS-----SIPTPNRITDKPFL 854
V G + +E D+ + G L+ L++ S D PFL
Sbjct: 213 NWVPISGFSGEGVYKIEYTDEVRQWYNGPN----LMSTLENAAFKISKENEGINKDDPFL 268
Query: 855 MPIEDVFS---ISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK------ 905
+ ++ S +V+GK+E G ++ GE + I +Q+ + I++
Sbjct: 269 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQS--CIVDKIQVGSQQGQST 326
Query: 906 --KTLDEGLAGENVGILLRSVKREEVERGQVL--AKIGSIKSYNIFECEVYILSKEEGGR 961
+ D + G+ V + LR E+++ G + SI S F E+
Sbjct: 327 NHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFD------ 380
Query: 962 H-TPFFNGYKPQFYFRTTDVTGICKLPENVEMV 993
P G + + ++ + +
Sbjct: 381 MNRPLLPGTPFILFIGVKEQP--ARIKRLISFI 411
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 35/103 (33%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTT-------------------ITDW 50
+ ++ HVDAGK+T R+L+ + V+ I D
Sbjct: 35 SFVVLGHVDAGKSTLMGRLLY------DLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQ 88
Query: 51 MQQEQERGITITSASVSIFWEVNKF---KYMINIIDTPGHVDF 90
+E+ERG+T++ + F + I+D PGH DF
Sbjct: 89 TNEERERGVTVSIC-------TSHFSTHRANFTIVDAPGHRDF 124
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 1e-58
Identities = 99/422 (23%), Positives = 168/422 (39%), Gaps = 75/422 (17%)
Query: 657 IGHVDHGKTTLT---------------AALTKVSSEIYGGEVRAFDTIDNAPEEKERGIT 701
IGHVD GK+TL + + + E +D+ EE+E+G T
Sbjct: 49 IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKT 108
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQ 754
+ +E+E++ ++ +D PGH Y+ NMI GA+Q D +LV SA G Q
Sbjct: 109 VEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ 168
Query: 755 TREHILLARQVGVPNIVVFLNKADCVQ---DKELLDLVEMEIRELLTE---YDFDGENTK 808
TREH +LAR G+ ++VV +NK D +E ++ L Y+ +
Sbjct: 169 TREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKY 228
Query: 809 IVIGSALLA---LEGKDDNQL----GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVF 861
+ + SA + D + G + LL+ LD S+ R + PF+MPI +
Sbjct: 229 MPV-SAYTGQNVKDRVDSSVCPWYQGPS----LLEYLD-SMTHLERKVNAPFIMPIASKY 282
Query: 862 SISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGI-EMFKKTLDEGLAGENVGIL 920
GT++ GKIE G +K + ++ QT +T I + + + + G+ V +
Sbjct: 283 --KDLGTILEGKIEAGSIKKNSNVLVMPINQT--LEVTAIYDEADEEISSSICGDQVRLR 338
Query: 921 LR-SVKREEVERGQVLAKIG-SIKSYNIFECEVYILSKEEGGRH-TPFFNGYKPQFYFRT 977
+R +V+ G VL + + F ++ IL + GY + T
Sbjct: 339 VRGDDS--DVQTGYVLTSTKNPVHATTRFIAQIAILE------LPSILTTGYSCVMHIHT 390
Query: 978 TDVTGIC------------KLPENVEMVLPGDNIKLNVTLLSSIAIEI-----GL-RFAI 1019
K + G I + + + +E + RF +
Sbjct: 391 AVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTL 450
Query: 1020 RE 1021
R+
Sbjct: 451 RD 452
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 7e-13
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 31/173 (17%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGS------------SHKIG-EVHHGTTITDWMQQEQE 56
NI I HVDAGK+T ILF +G + + G E + + D +E+E
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG--- 113
+G T+ +++D PGH + + D V++I A G
Sbjct: 105 KGKTVEVG----RAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 160
Query: 114 ----IQPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYNNCIIDIKKKFNCIV 161
QT ++ + ++ +NKMD ++ ++++ V
Sbjct: 161 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS------EERYKECV 207
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 4e-58
Identities = 121/426 (28%), Positives = 186/426 (43%), Gaps = 73/426 (17%)
Query: 657 IGHVDHGKTTLTAAL---------------TKVSSEIYGGEVRAFDTIDNAPEEKERGIT 701
IGHVD GK+T T L K ++E+ G + +D E+ERGIT
Sbjct: 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGIT 72
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQ 754
I + ++E+ +D PGH D+IKNMITG +Q D AIL+ + G Q
Sbjct: 73 IDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQ 132
Query: 755 TREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIGS 813
TREH LLA +GV ++V +NK D V+ D+ + E + + ++ + V S
Sbjct: 133 TREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPIS 192
Query: 814 AL-----------------LALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMP 856
E K G T LL+ +D +I P+R TDKP +P
Sbjct: 193 GWNGDNMIEATTNAPWYKGWEKETKAGVVKGKT----LLEAID-AIEQPSRPTDKPLRLP 247
Query: 857 IEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGEN 916
++DV+ I G GTV G++E G++K G + T T + +EM + L++G+ G+N
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVT--TEVKSVEMHHEQLEQGVPGDN 305
Query: 917 VGILLRSVKREEVERGQVL--AKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFY 974
VG +++V +E+ RG V AK K F V +L+ GY P
Sbjct: 306 VGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHP-----GQISAGYSPVLD 360
Query: 975 FRTTDVTGIC-------------KLPENVEMVLPGDNIKLNVTLLSSIAIEI-----GL- 1015
T + KL ++ + + GD + + +E L
Sbjct: 361 CHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLG 420
Query: 1016 RFAIRE 1021
RFA+R+
Sbjct: 421 RFAVRD 426
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 3e-14
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 25/152 (16%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGS------------SHKIG-EVHHGTTITDWMQQEQE 56
N+ +I HVD+GK+TTT +++ G + ++G + D ++ E+E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
RGITI A W+ KY + +ID PGH DF + D A++II G
Sbjct: 69 RGITIDIA----LWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFE 124
Query: 117 QTETVWFQSQKYK-------VPKMIF-VNKMD 140
+ Q++++ V ++I VNKMD
Sbjct: 125 AGISKDGQTREHALLAFTLGVRQLIVAVNKMD 156
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 1e-57
Identities = 86/393 (21%), Positives = 155/393 (39%), Gaps = 76/393 (19%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIY--GG----EVRAFDT---------------IDNAPEE 695
+GHVD GK+TL L +Y ++R +D EE
Sbjct: 173 LGHVDAGKSTLMGRL------LYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEE 226
Query: 696 KERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM--- 752
+ERG+T+S + + ++ VD PGH D++ N I G +Q D AIL
Sbjct: 227 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 286
Query: 753 ----PQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENT 807
QT+EH+LLA +G+ N+++ +NK D V ++ + ++ ++ L + F +N
Sbjct: 287 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNI 346
Query: 808 KIVIGSA-----LLALEGKDDNQL---GTTSIKKLLDVLDS-----SIPTPNRITDKPFL 854
V S + +E D+ + G L+ L++ S D PFL
Sbjct: 347 NWVPISGFSGEGVYKIEYTDEVRQWYNGPN----LMSTLENAAFKISKENEGINKDDPFL 402
Query: 855 MPIEDVFS---ISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK------ 905
+ ++ S +V+GK+E G ++ GE + I +Q+ + I++
Sbjct: 403 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQS--CIVDKIQVGSQQGQST 460
Query: 906 --KTLDEGLAGENVGILLRSVKREEVERGQVL--AKIGSIKSYNIFECEVYILSKEEGGR 961
+ D + G+ V + LR E+++ G + SI S F E+
Sbjct: 461 NHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFD------ 514
Query: 962 H-TPFFNGYKPQFYFRTTDVTGICKLPENVEMV 993
P G + + ++ + +
Sbjct: 515 MNRPLLPGTPFILFIGVKEQP--ARIKRLISFI 545
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG--SSHKI-------GEVHHGTT----ITDWMQQEQE 56
+ ++ HVDAGK+T R+L+ + ++ + + I D +E+E
Sbjct: 169 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 228
Query: 57 RGITITSASVSIFWEVNKF---KYMINIIDTPGHVDF 90
RG+T++ + F + I+D PGH DF
Sbjct: 229 RGVTVSIC-------TSHFSTHRANFTIVDAPGHRDF 258
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 1e-51
Identities = 128/488 (26%), Positives = 214/488 (43%), Gaps = 71/488 (14%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH----HGTTITDWMQQEQERGITITSA 64
R II+H DAGKTT TE++L + G+ G + +DWM+ E++RGI++T++
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTS 73
Query: 65 SVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
V +F Y +IN++DTPGH DFT + R+L +D A+++I A+ G++P+T +
Sbjct: 74 -------VMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL 126
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII 181
+ P M F+NKMDR + +I+ P+ + IG+ + ++GI +I
Sbjct: 127 MEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLI 186
Query: 182 NKKSFF-------WKENSIIIKNIDKDQLSAF--DYYNELMLETL---SNNDEFFLEKYI 229
+ S I+ I+ +L D +EL E + F E Y
Sbjct: 187 EDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGY- 245
Query: 230 NNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDY 289
LK ++ PI GS++ N G+ LL++ + P P + N
Sbjct: 246 -----------------LKGELTPIFFGSAINNFGVGELLDAFVKEAPPP--QGRETNSR 286
Query: 290 NINLNSNKFVSLVFKIF-------HDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIF 342
+ KF VFKI D ++F+RI SG + G Y+ K + +I
Sbjct: 287 LVKPEEEKFSGFVFKIQANMDPGHRD----RIAFLRIASGQYQKGMKAYHVRLKKEIQIN 342
Query: 343 RILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVIS---- 398
L A +++ +A GDI+ + GDT E + T IP +
Sbjct: 343 NALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQ-GERFKF----TGIPNFASELF 397
Query: 399 --ISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILK 456
+ ++ K LL L + +E + L ++ E IL +G L +++ R+
Sbjct: 398 RLVRLKDPLKQKA--LLKGLTQLSEEGATQLF-RPLDSNELILGAVGLLQFDVVAYRLEN 454
Query: 457 ENNIKTKI 464
E N+K
Sbjct: 455 EYNVKCVY 462
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-12
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 9/154 (5%)
Query: 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEI-YGGEVRA-----FDTIDNAPEEKERGITIS 703
T I H D GKTTLT L I G +++ T D EK+RGI+++
Sbjct: 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVT 71
Query: 704 TSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLAR 763
TS +++ ++ +D PGHAD+ ++ +D A++V A G P+T + + + R
Sbjct: 72 TSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCR 131
Query: 764 QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797
P I+ F+NK D + ++L++ EI +L
Sbjct: 132 LRHTP-IMTFINKMD-RDTRPSIELLD-EIESIL 162
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 2e-50
Identities = 111/489 (22%), Positives = 218/489 (44%), Gaps = 72/489 (14%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH----HGTTITDWMQQEQERGITITSA 64
R II+H DAGKTT TE++L + + G V + +DWM+ E++RGI+IT++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 65 SVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
V +F Y ++N++DTPGH DF+ + R+L +D +++I A+ G++ +T +
Sbjct: 74 -------VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKL 126
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII 181
++ P + F+NK+DR + + +++ + PI + IG + ++G+ +
Sbjct: 127 MEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLY 186
Query: 182 NKKSFFWKENS-------IIIKNIDKDQLSAF------DYYNELMLETLSNNDEFFLEKY 228
+++ ++ I+K ++ L A + + ++EF E +
Sbjct: 187 KDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELF 246
Query: 229 INNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNND 288
L +I P+ G++L N G++ +L+ + E+ P+P + + +
Sbjct: 247 ------------------LAGEITPVFFGTALGNFGVDHMLDGLVEWAPAP--MPRQTDT 286
Query: 289 YNINLNSNKFVSLVFKIF-------HDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKI 341
+ + +KF VFKI D ++F+R+ SG + G + I
Sbjct: 287 RTVEASEDKFTGFVFKIQANMDPKHRD----RVAFMRVVSGKYEKGMKLRQVRTAKDVVI 342
Query: 342 FRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVIS--- 398
L A + + +A+ GDI+ + GDT E ++ T IP +
Sbjct: 343 SDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQ-GEMMKF----TGIPNFAPEL 397
Query: 399 ---ISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRIL 455
I ++ K Q LL L + +E + + + I+ +G L +++V R+
Sbjct: 398 FRRIRLKDPLKQKQ--LLKGLVQLSEEGAVQVF-RPISNNDLIVGAVGVLQFDVVVARLK 454
Query: 456 KENNIKTKI 464
E N++
Sbjct: 455 SEYNVEAVY 463
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 4e-12
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 9/154 (5%)
Query: 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEI-YGGEVRA-----FDTIDNAPEEKERGITIS 703
+ T I H D GKTT+T + I G V+ D EK+RGI+I+
Sbjct: 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISIT 71
Query: 704 TSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLAR 763
TS +++ + +D PGH D+ ++ +D ++V A G +TR+ + + R
Sbjct: 72 TSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR 131
Query: 764 QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797
P I+ F+NK D ++ ++L++ E+ L
Sbjct: 132 LRDTP-ILTFMNKLD-RDIRDPMELLD-EVENEL 162
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 2e-42
Identities = 79/313 (25%), Positives = 144/313 (46%), Gaps = 42/313 (13%)
Query: 656 TIGHVDHGKTTL---------------TAALTKVSSE--IYGGEVRAFDTIDNAPEEKER 698
T G+VD GK+TL A+T+ S + G +V +D E+E+
Sbjct: 29 TCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQ 88
Query: 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
GITI ++ + + + + D PGH Y +NM TGA+ D AI++ A G QTR H
Sbjct: 89 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH 148
Query: 759 ILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLA 817
+A +G+ +IVV +NK D D+ + + ++ + + F V S A
Sbjct: 149 SYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMS---A 205
Query: 818 LEGKDDNQLGTTSIKK-------LLDVLDSSIPTPNRITDKPFLMPIEDV--FSISGRGT 868
L+G DN + S + L+++L+ ++ + P++ V +++ RG
Sbjct: 206 LKG--DN-VVNKSERSPWYAGQSLMEILE-TVEIASDRNYTDLRFPVQYVNRPNLNFRG- 260
Query: 869 VVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKRE- 927
G + GIV G+EI ++ ++ + + I F+ L++ G+ V + + + E
Sbjct: 261 -FAGTLASGIVHKGDEIVVLPSGKS--SRVKSIVTFEGELEQAGPGQAVTLTM---EDEI 314
Query: 928 EVERGQVLAKIGS 940
++ RG +L +
Sbjct: 315 DISRGDLLVHADN 327
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-13
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGS------------SHKIGEVHHGTTI-----TDWMQ 52
+VD GK+T R+L S S K G G + D +Q
Sbjct: 26 RFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSG--TTGDDVDLALLVDGLQ 83
Query: 53 QEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASS 112
E+E+GITI A ++ K K++ I DTPGH +T + D A+I++ A
Sbjct: 84 AEREQGITIDVA--YRYFSTAKRKFI--IADTPGHEQYTRNMATGASTCDLAIILVDARY 139
Query: 113 GIQPQTETVWFQSQKYKVPKMIF-VNKMDRIG 143
G+Q QT + + + ++ +NKMD G
Sbjct: 140 GVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171
|
| >1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1 Length = 116 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 4e-28
Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 845 PNRITDKPFL-MPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEM 903
++ KP + +E+V +I G+ ++ G +E G++ G +++ + I IE
Sbjct: 26 IEILSKKPAGKVVVEEVVNIMGKDVII-GTVESGMIGVGFKVK----GPSGIGGIVRIER 80
Query: 904 FKKTLDEGLAGENVGILLRSVKREEVERGQVLA 936
++ ++ +AG+ +GI + K +V++G VL
Sbjct: 81 NREKVEFAIAGDRIGISIEG-KIGKVKKGDVLE 112
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 7e-24
Identities = 49/111 (44%), Positives = 73/111 (65%), Gaps = 4/111 (3%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RN IIAHVD GK+T +R+L Y+G+ I E + D + E+ERGIT+ +V +
Sbjct: 7 RNFCIIAHVDHGKSTLADRLLEYTGA---ISEREKREQLLDTLDVERERGITVKMQAVRM 63
Query: 69 FWEV-NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
F++ + Y +++IDTPGHVDF+ EV R+L +GA+++I AS GI+ QT
Sbjct: 64 FYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQT 114
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 3e-07
Identities = 82/280 (29%), Positives = 128/280 (45%), Gaps = 37/280 (13%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV--EYESEN- 713
I HVDHGK+TL L + + I E R +D E+ERGIT+ V Y++++
Sbjct: 12 IAHVDHGKSTLADRLLEYTGAISEREKRE-QLLDTLDVERERGITVKMQAVRMFYKAKDG 70
Query: 714 KHYA--HVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIV 771
Y +D PGH D+ + A +GA+L+ A G QT + A + + I+
Sbjct: 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDL-VII 129
Query: 772 VFLNKADCVQDKELL-----DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQL 826
+NK D L D V+ +I E+L D E ++ SA K +
Sbjct: 130 PVINKID-------LPSADVDRVKKQIEEVL---GLDPEE--AILASA------K--EGI 169
Query: 827 GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886
G I+++L+ + + IP P KP I D + RG V +I G VK G++I
Sbjct: 170 G---IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIM 226
Query: 887 IVGYKQTIKTTITGIEMFKKTLDEGL-AGENVGILLRSVK 925
++ + + T G + K T + L AG+ VG + S+K
Sbjct: 227 LMSTGKEYEVTEVGAQTPKMTKFDKLSAGD-VGYIAASIK 265
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 50.5 bits (122), Expect = 2e-06
Identities = 51/228 (22%), Positives = 97/228 (42%), Gaps = 41/228 (17%)
Query: 264 GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323
GIE +L +I +P P D L + L+F ++DP+ G+++F+RI+ G
Sbjct: 170 GIEEILEAIVNRIPPPKG------DPQKPLKA-----LIFDSYYDPYRGAVAFVRIFDGE 218
Query: 324 IKVGDLVYN-STKKVKEKIFRILRM--FANSKKDINDAHFGDI-VVIVGLK---ESSTGD 376
+K GD + ST K + + + + GD+ + +K + GD
Sbjct: 219 VKPGDKIMLMSTGKE----YEVTEVGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGD 274
Query: 377 TLCSLSENIQ--LENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNT 434
T+ + + + P++ I P E+L + L+K+ D +++
Sbjct: 275 TITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEP---- 330
Query: 435 GETILSG----------MGELHLEIIVDRILKENNIKTKISKPQVSYK 472
E+ S +G LH+EI+ +R+ +E +K + P V Y+
Sbjct: 331 -ES--SPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYR 375
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-23
Identities = 46/111 (41%), Positives = 70/111 (63%), Gaps = 4/111 (3%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RN IIAH+D GK+T ++RI+ G + + + D M E+ERGITI + SV++
Sbjct: 5 RNFSIIAHIDHGKSTLSDRIIQICGG---LSDREMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 69 FWEV-NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
++ + Y +N IDTPGHVDF+ EV RSL +GA++++ A G++ QT
Sbjct: 62 DYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQT 112
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 4e-07
Identities = 77/281 (27%), Positives = 130/281 (46%), Gaps = 39/281 (13%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV--EYESEN- 713
I H+DHGK+TL+ + ++ + E+ A +D+ E+ERGITI V +Y++ +
Sbjct: 10 IAHIDHGKSTLSDRIIQICGGLSDREMEA-QVLDSMDLERERGITIKAQSVTLDYKASDG 68
Query: 714 KHYA--HVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIV 771
+ Y +D PGH D+ + A +GA+LV A G QT + A ++ + +V
Sbjct: 69 ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL-EVV 127
Query: 772 VFLNKADCVQDKELL-----DLVEMEIRELLTEYDFDG-ENTKIVIGSALLALEGKDDNQ 825
LNK D L + V EI +++ G + T V SA K
Sbjct: 128 PVLNKID-------LPAADPERVAEEIEDIV------GIDATDAVRCSA------K--TG 166
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
+G ++ +L+ L IP P + P I D + + G V +I+ G ++ G+++
Sbjct: 167 VG---VQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223
Query: 886 EIVGYKQTIKTTITGIEMFKKTLDEGL-AGENVGILLRSVK 925
+++ QT GI K+ L GE VG L+ ++K
Sbjct: 224 KVMSTGQTYNADRLGIFTPKQVDRTELKCGE-VGWLVCAIK 263
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 2e-06
Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 41/228 (17%)
Query: 264 GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323
G++ +L + +P P D L + L+ + D +LG +S IRI +G
Sbjct: 168 GVQDVLERLVRDIPPPEG------DPEGPLQA-----LIIDSWFDNYLGVVSLIRIKNGT 216
Query: 324 IKVGDLVYN-STKKVKEKIFRILRM--FANSKKDINDAHFGDI-VVIVGLK---ESSTGD 376
++ GD V ST + + R+ F + D + G++ ++ +K + GD
Sbjct: 217 LRKGDKVKVMSTGQT----YNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGD 272
Query: 377 TLCSLSENIQ--LENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNT 434
TL + L + P + + P+ +D E + L K D SL
Sbjct: 273 TLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEP---- 328
Query: 435 GETILSG----------MGELHLEIIVDRILKENNIKTKISKPQVSYK 472
E+ S +G LH+EII +R+ +E ++ + P V Y+
Sbjct: 329 -ES--SSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYE 373
|
| >3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 6e-19
Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 35/195 (17%)
Query: 849 TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTL 908
P +PI D + GTVV GK+E G + G+++ ++ K + GI
Sbjct: 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHN--VEVLGILSDDVET 58
Query: 909 DEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIFECEVYILSKEEGGRH-TPFF 966
D GEN+ I L+ ++ EE+ G +L + S F+ ++ I+ H +
Sbjct: 59 DTVAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIE------HKSIIC 112
Query: 967 NGYKPQFYFRTTDV--------------TGICKLPENVEMVLPGDNIKLNVTLLSSIAIE 1012
GY + T +G K V + +I +E
Sbjct: 113 PGYNAVLHIHTCIEEVEITALICLVDKKSGE-KSKTRPRFVKQDQVCIARLRTAGTICLE 171
Query: 1013 -------IGLRFAIR 1020
+G RF +R
Sbjct: 172 TFKDFPQMG-RFTLR 185
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-17
Identities = 49/128 (38%), Positives = 60/128 (46%), Gaps = 26/128 (20%)
Query: 656 TI-GHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYE 710
TI GHVDHGKTTL A+ +KV+ + GG IT I V
Sbjct: 12 TIMGHVDHGKTTLLDAIRHSKVTEQEAGG------------------ITQHIGAYQVTVN 53
Query: 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
+K +D PGH + GA D ILV +A DG MPQT E I A+ VP I
Sbjct: 54 --DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-I 110
Query: 771 VVFLNKAD 778
+V +NK D
Sbjct: 111 IVAINKMD 118
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 4e-10
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 26/135 (19%)
Query: 13 IIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGIT--ITSASVSIFW 70
I+ HVD GKTT + I K+ E G GIT I + +
Sbjct: 13 IMGHVDHGKTTLLDAI-----RHSKVTEQEAG-------------GITQHIGA------Y 48
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV 130
+V I +DTPGH FT R +V D ++++ A G+ PQT ++ V
Sbjct: 49 QVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANV 108
Query: 131 PKMIFVNKMDRIGAN 145
P ++ +NKMD+ AN
Sbjct: 109 PIIVAINKMDKPEAN 123
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 2e-13
Identities = 53/128 (41%), Positives = 63/128 (49%), Gaps = 26/128 (20%)
Query: 656 TI-GHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYE 710
TI GHVDHGKT+L + TKV+S GE GIT I HVE E
Sbjct: 8 TIMGHVDHGKTSLLEYIRSTKVAS----GEAG--------------GITQHIGAYHVETE 49
Query: 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
N +D PGHA + GA D +LV +A DG MPQT E I A+ VP +
Sbjct: 50 --NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-V 106
Query: 771 VVFLNKAD 778
VV +NK D
Sbjct: 107 VVAVNKID 114
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 6e-06
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 78 MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVN 137
MI +DTPGH FT R + D V+++ A G+ PQT ++ +VP ++ VN
Sbjct: 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVN 111
Query: 138 KMDRIGAN 145
K+D+ A+
Sbjct: 112 KIDKPEAD 119
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 4e-13
Identities = 48/128 (37%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 656 TI-GHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYE 710
TI GHVDHGKTTL L T+V++ GG IT I V
Sbjct: 8 TIMGHVDHGKTTLLDKLRKTQVAAMEAGG------------------ITQHIGAFLVSLP 49
Query: 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
S + +D PGHA + G D ILV +A DG M QT E I A+ VP I
Sbjct: 50 S-GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-I 107
Query: 771 VVFLNKAD 778
V+ +NK D
Sbjct: 108 VLAINKCD 115
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 39 GEVHHG-TTITDWMQQ----EQERG-IT--ITSASVSIFWEVNKFKYMINIIDTPGHVDF 90
G V HG TT+ D +++ E G IT I + VS+ I +DTPGH F
Sbjct: 11 GHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL-----PSGEKITFLDTPGHAAF 65
Query: 91 TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGAN 145
+ R +V D ++++ A G+ QT ++ VP ++ +NK D+ A+
Sbjct: 66 SAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEAD 120
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 63/324 (19%), Positives = 101/324 (31%), Gaps = 88/324 (27%)
Query: 658 GHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYESEN 713
GHVDHGKTTL + + V+S E GIT I + + +
Sbjct: 12 GHVDHGKTTLLDHIRGSAVAS----REAG--------------GITQHIGATEIPMDVIE 53
Query: 714 KHYAHVDCPGHADYIKNMIT----------------GAAQMDGAILVCSAVDGPMPQTRE 757
+ G A D AIL+ +G PQT+E
Sbjct: 54 GICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQE 113
Query: 758 HILLARQVGVPNIVVFLNKAD-----------------CVQDKELLDLVEM---EIRELL 797
+ + R P VV NK D QD ++ ++ E+ L
Sbjct: 114 ALNILRMYRTP-FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKL 172
Query: 798 TEYDFD----------GENTKIVIGSALLALEGKDDNQLGTTSIKKLLD--VLDSSIPTP 845
E F+ I+ SA+ EG + LL + +
Sbjct: 173 HEEGFESERFDRVTDFASQVSIIPISAITG-EGIPE----------LLTMLMGLAQQYLR 221
Query: 846 NRITDKPFLMP----IEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGI 901
++ + +E V +G G + I GI++ + I ++ K I T I +
Sbjct: 222 EQLKIEEDSPARGTILE-VKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSL 280
Query: 902 EMFKKTLDEGLAGENVGILLRSVK 925
+ L+E + V
Sbjct: 281 LK-PRPLEEMRESRKKFQKVDEVV 303
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 44/163 (26%)
Query: 16 HVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQE-RGIT-------------- 60
HVD GKTT + I G+ + +E GIT
Sbjct: 13 HVDHGKTTLLDHI--------------RGSAV-----ASREAGGITQHIGATEIPMDVIE 53
Query: 61 ITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLR-----VLDGAVIIICASSGIQ 115
+ + + + IDTPGH FT +LR + D A++I+ + G +
Sbjct: 54 GICGDFLKKFSIRETLPGLFFIDTPGHEAFT-----TLRKRGGALADLAILIVDINEGFK 108
Query: 116 PQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFN 158
PQT+ + Y+ P ++ NK+DRI + + F+
Sbjct: 109 PQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 4e-11
Identities = 105/749 (14%), Positives = 225/749 (30%), Gaps = 256/749 (34%)
Query: 126 QKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKS 185
+Y+ ++ V + F+C + + D+ KS
Sbjct: 14 HQYQYKDILSVFEDA------------FVDNFDC---------------KDVQDMP--KS 44
Query: 186 FFWKENSIIIKNI--DKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIR 243
KE I +I KD +S +L + F+E+ + NY
Sbjct: 45 ILSKEE---IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---------- 91
Query: 244 KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVF 303
+FL++ I P ++ + ++
Sbjct: 92 ----------------------KFLMSPIKTEQRQP------------SMMTRMYIEQRD 117
Query: 304 KIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDI 363
++++D F K YN ++ + ++ + + N
Sbjct: 118 RLYNDN-----------QVFAK-----YNVSR--LQPYLKLRQALLELRPAKN------- 152
Query: 364 VVIVGL----KESSTGDTLCSLSENIQLENIETPIPV--ISISIEPIFKNDQEKLLNILQ 417
V+I G+ K D LS +Q + + +++ N E +L +LQ
Sbjct: 153 VLIDGVLGSGKTWVALDVC--LSYKVQCKM---DFKIFWLNLK----NCNSPETVLEMLQ 203
Query: 418 KFC---------KEDPSLLLSINNNTGETILSG--MGELHLE--IIVD-----RILKENN 459
K + D S + + ++ + L + + +++ + N
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 460 IKTKISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISL---ENKENFIFK 516
+ KI ++T K + H+ + ++L E K +
Sbjct: 264 LSCKI-------------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 517 SEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYP-VIK-IKVFLVNGSFHSVDSSEYAFKN 574
+ +P+E + N P + I + +G + + + +K+
Sbjct: 311 LDCRPQDLPRE---------VLTTN-------PRRLSIIAESIRDG----LATWDN-WKH 349
Query: 575 AAAIALKDALKKANSY-ILEP-----------IMKVEVNLPSEFLGIVVGDINKKRGIIN 622
L ++ S +LEP + ++P+ L ++ D
Sbjct: 350 VNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD--------- 398
Query: 623 TIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIG----HVD-HGKTTLTAALTKVSSE 677
+I + ++N +L YS + + TI +++ K AL + +
Sbjct: 399 -VIKSDVMVVVN------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 678 IYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD----------- 726
Y + FD+ D P ++ SH+ + H+ H +
Sbjct: 452 HY-NIPKTFDSDDLIPPYLDQYF---YSHIGH--------HLKNIEHPERMTLFRMVFLD 499
Query: 727 --YIKNMITGAAQMDGAILVCSAVDGPMPQT----REHI-----LLARQVGVPNIVVFLN 775
+++ I + D S Q + +I R V I+ FL
Sbjct: 500 FRFLEQKI----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN--AILDFLP 553
Query: 776 KA--DCVQDKELLDLVEMEIRELLTEYDF 802
K + + K DL+ + L+ E +
Sbjct: 554 KIEENLICSKY-TDLLRI---ALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-09
Identities = 54/465 (11%), Positives = 138/465 (29%), Gaps = 119/465 (25%)
Query: 1 MKNKVLYFR-NIGIIAH--VDAGKTTTTERILFYSGSSHKI-----GEVH-----HGTTI 47
++ +L R ++ + +GKT + S+K+ ++ + +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 48 TDWMQQEQERGITIT-------SASVSIFWEVNKFKYMI-NIIDTPGHVDFTIEVERSLR 99
++ Q+ I S +I ++ + + ++ + + E L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-------ENCLL 248
Query: 100 VLDGA--------------VIIICASSGIQPQTETVWFQSQKYKVPKMIFVNK------M 139
VL +++ + T+ + + + + +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQV---TDFL--SAATTTHISLDHHSMTLTPDEV 303
Query: 140 DRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIIN--KKSFFWKENSII--- 194
+ Y +C + P +I I E+ + + K K +II
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 195 IKNIDKDQLSAFDYYNEL------------MLETL-----SNNDEFFLEKYIN------- 230
+ ++ + ++ L +L + ++ + K
Sbjct: 363 LNVLEPAEYR--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 231 ---NNYSINDIKNSIR-----KLVLKNKII---PIMCGSSLKNKGIEFLLNSICEYLPSP 279
+ SI I ++ + L I+ I + +L ++
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--G 478
Query: 280 YDVDFKNNDYNINLNSNKFVSLVF---KIFHD--------PFLGSLSFIRIYSGFIKVGD 328
+ + + + L F+ F KI HD L +L ++ Y +I D
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 329 LVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESS 373
Y + + IL ++++ + + D++ I + E
Sbjct: 539 PKY------ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 3e-08
Identities = 71/528 (13%), Positives = 159/528 (30%), Gaps = 113/528 (21%)
Query: 493 GQYGHVVIRIEPISLEN-KENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551
G++ + I + + +NF K + + K I+++ ++
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKD-----------VQDMPKSILSKEEIDHIIMSKDA 60
Query: 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVV 611
+ F ++ S + + +++ L+ +++ PI K E PS + +
Sbjct: 61 VSGTLRL---FWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYI 113
Query: 612 GDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTK----GTIGHVDHGKTTL 667
++ + N + Y+ LR+ +LR G +G GKT +
Sbjct: 114 EQRDRLYNDNQVFAKY-NVSRLQPYLKLRQAL---LELRPAKNVLIDGVLGS---GKTWV 166
Query: 668 TAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHV-DCPGHAD 726
+ ++ I + ++ +C
Sbjct: 167 ALDV-----------CLSYKVQCKMD----FKI--------------FWLNLKNCNSPET 197
Query: 727 YIKNMITGAAQMDGAILVCSAVDGPMP--------QTREHILLARQVGVPNIVVFLNKAD 778
++ + Q+D S D Q LL + N ++ L
Sbjct: 198 VLEMLQKLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVL---L 251
Query: 779 CVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTT---SIKKLL 835
VQ+ + + + + LLT + T + + + D + + T LL
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTR--FKQVTDFLSAATTTHISL-DHHSMTLTPDEVKSLLL 308
Query: 836 DVLDSSIPT-PNRITD-KPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQT 893
LD P + P +S + + N + +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRR--------LSIIAESIRDGLAT--WDNWKHVNCDKLTTI 358
Query: 894 IKTTITGIE--MFKKTLDEGLA--GENVGI-------LLRSVKREEVER-GQVLAKIGSI 941
I++++ +E ++K D L+ + I + V + +V L K +
Sbjct: 359 IESSLNVLEPAEYRKMFDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 942 K------SYNIFECEVYILSKEEGGR--HTPFFNGYKPQFYFRTTDVT 981
+ + +I + + K E H + Y F + D+
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 7e-06
Identities = 78/659 (11%), Positives = 182/659 (27%), Gaps = 238/659 (36%)
Query: 357 DAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISIS-IEPIFK--NDQEKLL 413
+ DI+ + +++ + C +++Q + P ++S I+ I + L
Sbjct: 15 QYQYKDILSV--FEDAFVDNFDC---KDVQ----DMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 414 NILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKE 473
+ LLS + + + ++ + ++ I E S Y E
Sbjct: 66 RLF--------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIE 114
Query: 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIE 533
++ + K + V R++P +
Sbjct: 115 QRDRLYNDNQVFAKYN---------VSRLQPYL------------------------KLR 141
Query: 534 KGIMN-QINYGVVL-GYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYI 591
+ ++ + V++ G V GS + A
Sbjct: 142 QALLELRPAKNVLIDG----------VLGSGKTW---------VALDVCLSY-------- 174
Query: 592 LEPIMKVEVNLPSEFLGIVVGDINKKRGIIN------TIIDHENFKIINSY---IPLREL 642
KV+ + + + + + N ++ ID N+ + + I LR
Sbjct: 175 -----KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLR-- 226
Query: 643 FGYSTDLRSNTKGTIGHVDHGKTTLTAALTKV-SSEIYGGEVRAFDTIDNAPEEKERGIT 701
+++ + + + L L V +++ AF+
Sbjct: 227 ---IHSIQAELRRLLKSKPYENCLLV--LLNVQNAKA----WNAFN-------------- 263
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILL 761
+ C K ++T TR
Sbjct: 264 -----------------LSC-------KILLT---------------------TR----- 273
Query: 762 ARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY------DFDGENTKI---VIG 812
V + + D + L E++ LL +Y D E +
Sbjct: 274 --FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL- 330
Query: 813 SALLALEGKDD----NQLGTTSIKKLLDVLDSSI----PTPNR-ITDKPFLMPIEDVFSI 863
+++A +D + + KL +++SS+ P R + D+ + P
Sbjct: 331 -SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSA--- 385
Query: 864 SGRGTVVTGKIERGIVK----NGEEIEIVGYKQTIKTTITGIEMFKKTL-DEGLAGENVG 918
I ++ + + ++ + ++ K +L ++ +
Sbjct: 386 ---------HIPTILLSLIWFDVIKSDV----MVVVN-----KLHKYSLVEKQPKESTIS 427
Query: 919 I--LLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYF 975
I + +K + + I + YNI + + P+ + Y FY
Sbjct: 428 IPSIYLELKVKLENEYALHRSI--VDHYNIPKT------FDSDDLIPPYLDQY---FYS 475
|
| >3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} Length = 332 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 588 NSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKI-INSYIPLRELFGYS 646
+ ++EP V +++ E G ++ +I + G + + ++ ++ +P R L G+
Sbjct: 120 DGQLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQ 179
Query: 647 TDLRSNTKGT 656
T+ + T G+
Sbjct: 180 TEFMTLTSGS 189
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1021 | |||
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 100.0 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 100.0 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 100.0 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 100.0 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 100.0 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 100.0 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 100.0 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 100.0 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 100.0 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 100.0 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 100.0 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 100.0 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 100.0 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 100.0 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 100.0 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 100.0 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 100.0 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 100.0 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 100.0 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 100.0 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 100.0 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 100.0 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 100.0 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 100.0 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 100.0 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 100.0 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 100.0 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 100.0 | |
| 3e3x_A | 332 | BIPA; MCSG,PSI2, structural genomics, protein stru | 100.0 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 100.0 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 100.0 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 100.0 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 100.0 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 100.0 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.98 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.98 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.97 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.97 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.97 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.97 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.97 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.97 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.97 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.97 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.97 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.97 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.97 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.97 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.96 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.96 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.96 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.96 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.96 | |
| 3e1y_E | 204 | Eukaryotic peptide chain release factor GTP-bindi | 99.96 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.96 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.95 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.95 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.95 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.95 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.95 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.95 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.95 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.94 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.94 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.94 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.93 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.9 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.77 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.74 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.74 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.73 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.73 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.72 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.72 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.7 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.7 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.7 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.7 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.69 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.69 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.69 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.69 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.68 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.68 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.68 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.67 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.67 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.67 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.66 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.66 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.66 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.66 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.66 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.66 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.66 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.66 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.66 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.66 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.65 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.65 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.65 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.65 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.65 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.65 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.65 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.65 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.65 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.64 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.64 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.64 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.64 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.64 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.64 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.64 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.64 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.64 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.64 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.64 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.64 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.64 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.64 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.64 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.64 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.63 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.63 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.63 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.63 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.63 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.63 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.63 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.63 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.63 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.63 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.63 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.63 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.63 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.63 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.63 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.63 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.63 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.63 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.62 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.62 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.62 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.62 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.62 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.62 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.62 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.62 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.62 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.62 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.62 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.61 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.61 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.61 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.61 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.61 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.61 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.61 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.61 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.61 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.61 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.6 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.6 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.6 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.6 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.6 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.6 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.6 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.6 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.6 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.6 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.6 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.59 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.59 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.59 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.59 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.59 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.59 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.59 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.59 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.59 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.59 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.59 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.59 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.59 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.59 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.59 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.59 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.59 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.59 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.59 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.59 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.59 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.59 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.58 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.58 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.58 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.58 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.58 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.58 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.58 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.58 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.58 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.58 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.58 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.57 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.57 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.57 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.57 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.57 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.57 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.57 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.57 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.57 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.57 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.57 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.57 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.57 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.57 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.56 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.56 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.56 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.56 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.56 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.56 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.56 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.56 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.56 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.56 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.56 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.56 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.56 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.56 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.56 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.56 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.56 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.56 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.56 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.55 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.55 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.55 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.55 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.55 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.55 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.55 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.55 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.55 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.55 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.55 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.55 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.55 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.55 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.55 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.55 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.54 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.54 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.54 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.54 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.54 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.54 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.53 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.53 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.53 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.53 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.53 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.53 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.53 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.53 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.53 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.53 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.53 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.53 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.52 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.52 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.52 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.52 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.52 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.52 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.52 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.52 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.52 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.52 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.52 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.52 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.52 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.51 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.51 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.51 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.51 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.51 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.5 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.5 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.5 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.5 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.5 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.5 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.49 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.49 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.49 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.49 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.49 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.49 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.49 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.48 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.48 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.47 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.47 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.46 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.46 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.46 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.46 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.45 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.18 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.45 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.45 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.45 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.17 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.44 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.44 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.44 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.43 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.42 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.41 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.41 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.4 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.39 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.39 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.39 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.39 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.38 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.37 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.37 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.36 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.35 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.33 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.32 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.32 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.31 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.31 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.31 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.3 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.3 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.29 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.29 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.28 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.27 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.27 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.27 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.26 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.26 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.26 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.26 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.26 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.25 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.25 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.25 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.24 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.22 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.21 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.2 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.2 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.2 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.2 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.17 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.16 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.15 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.14 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.12 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.07 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.06 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.05 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.04 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.04 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.03 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.03 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.02 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.0 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 98.98 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 98.95 | |
| 1xe1_A | 116 | Hypothetical protein PF0907; structural genomics, | 98.94 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.93 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.92 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 98.92 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.9 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.87 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.84 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 98.81 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 98.8 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 98.78 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.73 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.71 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 98.71 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.68 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 98.68 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.67 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.64 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.63 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.55 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.55 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.54 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.43 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.4 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.38 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.37 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.37 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.35 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 98.35 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.34 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.34 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.29 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.28 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.28 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.28 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.27 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.26 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.22 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.22 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 98.18 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.17 | |
| 3e1y_E | 204 | Eukaryotic peptide chain release factor GTP-bindi | 98.14 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 98.1 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.08 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.08 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.07 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.06 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.05 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 98.03 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 98.02 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 97.93 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.89 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 97.87 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.86 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.84 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.83 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.79 | |
| 1d1n_A | 99 | Initiation factor 2; beta-barrel, gene regulation; | 97.73 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.69 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.67 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.66 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.63 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 97.63 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.62 | |
| 2crv_A | 120 | IF-2MT, translation initiation factor IF-2; riboso | 97.6 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.46 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.46 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.44 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.38 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 97.26 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 97.23 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.09 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 97.05 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 97.03 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.01 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 97.0 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 96.99 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.96 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.96 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.95 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 96.94 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.86 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.79 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 96.79 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.72 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.69 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.67 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 96.61 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 96.59 | |
| 1xe1_A | 116 | Hypothetical protein PF0907; structural genomics, | 96.58 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.51 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 96.5 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 96.49 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 96.43 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.36 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 96.25 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 96.15 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.03 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 95.81 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 95.75 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 95.71 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 95.65 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 95.61 | |
| 3ez9_A | 403 | Para; DNA binding, winged-HTH, partition, biosynth | 95.41 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 95.28 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 95.22 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 94.97 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 94.77 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 94.67 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 94.36 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 94.31 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 94.14 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 93.86 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 93.86 | |
| 3ez2_A | 398 | Plasmid partition protein A; type IA, DNA binding, | 93.8 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 93.71 | |
| 3of5_A | 228 | Dethiobiotin synthetase; structural genomics, cent | 93.58 | |
| 1d1n_A | 99 | Initiation factor 2; beta-barrel, gene regulation; | 93.31 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 92.94 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 92.84 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 92.75 |
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-128 Score=1188.75 Aligned_cols=659 Identities=47% Similarity=0.838 Sum_probs=600.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc---cCceeEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN---KFKYMIN 80 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~---~~~~~i~ 80 (1021)
+.++||||||+||+|||||||+++|++++|.+.+.|+++++.+++|++++|++|||||+++.+++.|+.. ..+|.||
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999999999752 3479999
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCc
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 160 (1021)
|||||||.||+.++.++|+.+|+||+||||.+|+++||+.+|++|.++++|+++|+||||++++++..+++++++.|+..
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~ 168 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHT 168 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSC
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccCCceeeEEecccceeeeecCCC----eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCH
Q psy5021 161 VLPINFNIGIEENYEGIVDIINKKSFFWKENS----IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSI 235 (1021)
Q Consensus 161 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~ 235 (1021)
+.++++|++.++.|.|++|+++++.++|+++. +...++|.+..+....++..++|.+++.|++++++|+++ +++.
T Consensus 169 ~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~ 248 (709)
T 4fn5_A 169 PVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSE 248 (709)
T ss_dssp EEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCH
T ss_pred eeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccH
Confidence 99999999999999999999999999998653 667889999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC----Ccc----cccc-CCCceEEEEEEEe
Q psy5021 236 NDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN----NDY----NINL-NSNKFVSLVFKIF 306 (1021)
Q Consensus 236 ~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~----~~~----~~~~-~~~p~~~~V~k~~ 306 (1021)
+++...+++.+..+.++|++++||+++.|++.||++|++++|+|.+.+... .+. ...| +++|++++|||+.
T Consensus 249 ~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~ 328 (709)
T 4fn5_A 249 AEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIA 328 (709)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECC
T ss_pred HHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEee
Confidence 999999999999999999999999999999999999999999998876533 111 2244 7899999999999
Q ss_pred ecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCcccc
Q psy5021 307 HDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQ 386 (1021)
Q Consensus 307 ~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~ 386 (1021)
+|++.|+++|+|||||+|++||+|++...++++++.+++.++|++++++++|.|||||+|.|++++.+|||||+...+..
T Consensus 329 ~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~~~~~~~~ 408 (709)
T 4fn5_A 329 TDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPII 408 (709)
T ss_dssp CBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEECSSSCCB
T ss_pred cccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCEecCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeC
Q psy5021 387 LENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISK 466 (1021)
Q Consensus 387 ~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~ 466 (1021)
++++.+|+|+++++|+|.+++|++||.++|++|+++||+|+++.+++|||++|+||||||||||++||+++||+++++|+
T Consensus 409 ~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev~vs~ 488 (709)
T 4fn5_A 409 LERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANIGK 488 (709)
T ss_dssp CC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCBCCBC
T ss_pred CCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHhCceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeecccc-eeeeeEEEecCCCCceeEEEEEEEeecCC----CCCCCceEEeccccCCCchhhHHHHHHHHHHHHh
Q psy5021 467 PQVSYKESIKKI-VTQEGKYIKQSGGKGQYGHVVIRIEPISL----ENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQIN 541 (1021)
Q Consensus 467 p~V~yrEti~~~-~~~~~~~~~~~~~~~~~~~~~~~~~P~~~----~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~ 541 (1021)
|+|+|||||++. ++.+++|+|+++|++||+.++++++|.+. ..++++.|.+++.++.+|++|+++|++||+||++
T Consensus 489 P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~ 568 (709)
T 4fn5_A 489 PQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIEEQMK 568 (709)
T ss_dssp CCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGGGHHHHHHHHHHHHH
T ss_pred ceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccccccCCHHHHHHHHHHHHHHHh
Confidence 999999999875 56889999999999999999999999752 1467899999999999999999999999999999
Q ss_pred cCcccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEE
Q psy5021 542 YGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGII 621 (1021)
Q Consensus 542 ~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i 621 (1021)
+||||||||+||+|+|.|+++|+++|++++|+.|+++||++|+.+|+|+||||||.|+|+||++|+|+||++|++|||+|
T Consensus 569 ~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i 648 (709)
T 4fn5_A 569 NGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLI 648 (709)
T ss_dssp HCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEE
T ss_pred cCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 622 NTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 622 ~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
.+++..+++.+|+|++|++|++||.++||+.|+|.+.+...
T Consensus 649 ~~~~~~~~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~ 689 (709)
T 4fn5_A 649 QGMEDTVSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSME 689 (709)
T ss_dssp EEEEECSSEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECC
T ss_pred eceEecCCCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEE
Confidence 99999999999999999999999999999999999987653
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-124 Score=1140.25 Aligned_cols=657 Identities=48% Similarity=0.822 Sum_probs=626.7
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec---ccCceeEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV---NKFKYMIN 80 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~---~~~~~~i~ 80 (1021)
+.+++|||+|+||+|||||||+++|++.++.+...|+++++.+++||++.|++||+|+.++..++.|.. ++..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 578899999999999999999999999999999889999999999999999999999999999999983 23349999
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCc
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 160 (1021)
|||||||.+|..++.++++.+|++|+|+|+++|++.|++.+|+++...++|+++|+||+|+..+++.++++++++.++.+
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~ 165 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGAN 165 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccCCceeeEEecccceeeeecC---CC-eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCH
Q psy5021 161 VLPINFNIGIEENYEGIVDIINKKSFFWKE---NS-IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSI 235 (1021)
Q Consensus 161 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~ 235 (1021)
++++++|++.++.|.|++|++.++.++|++ +. +...++|+++.+.+.++|++|+|.+++.||++||+||++ +++.
T Consensus 166 ~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~ 245 (704)
T 2rdo_7 166 PVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 245 (704)
T ss_pred ceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Confidence 999999999999999999999999999975 22 666788888899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC----C-c---ccccc-CCCceEEEEEEEe
Q psy5021 236 NDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN----N-D---YNINL-NSNKFVSLVFKIF 306 (1021)
Q Consensus 236 ~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~----~-~---~~~~~-~~~p~~~~V~k~~ 306 (1021)
+++...+++++..+.++|+||+||++|.|++.||++|++++|+|.+.+..+ . + ....| +++|++++|||++
T Consensus 246 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~ 325 (704)
T 2rdo_7 246 AEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIA 325 (704)
T ss_pred HHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEE
Confidence 999999999999999999999999999999999999999999998754321 0 0 12234 6789999999999
Q ss_pred ecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCcccc
Q psy5021 307 HDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQ 386 (1021)
Q Consensus 307 ~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~ 386 (1021)
+|+++|+++|+|||||+|++||.|++.+.+++++|.+++.++|++++++++|.||||+++.|++++.+|||||+...+..
T Consensus 326 ~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~~~~~~~~ 405 (704)
T 2rdo_7 326 TDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPII 405 (704)
T ss_pred EcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCEEeCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeC
Q psy5021 387 LENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISK 466 (1021)
Q Consensus 387 ~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~ 466 (1021)
+++++++.|+++++|+|.++.|++||.++|++|++|||+|++++++||||++|+|||||||||+++||+++||+++.+++
T Consensus 406 l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~~~~ 485 (704)
T 2rdo_7 406 LERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK 485 (704)
T ss_pred cCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeecccce-eeeeEEEecCCCCceeEEEEEEEeec---CCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhc
Q psy5021 467 PQVSYKESIKKIV-TQEGKYIKQSGGKGQYGHVVIRIEPI---SLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINY 542 (1021)
Q Consensus 467 p~V~yrEti~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~---~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~ 542 (1021)
|+|+|||||++++ +..++|+||+||++|||+++++++|+ + +|+|+.|.+++.++.+|++|+++|++||+||+++
T Consensus 486 p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~--~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~ 563 (704)
T 2rdo_7 486 PQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGS--NPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKA 563 (704)
T ss_pred CEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCC--CCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhc
Confidence 9999999999988 89999999999999999999999999 7 7899999999999999999999999999999999
Q ss_pred CcccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEe
Q psy5021 543 GVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIIN 622 (1021)
Q Consensus 543 Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~ 622 (1021)
||||||||+||+|+|+|+++|++||++++|+.|+++||++|+++|+|+||||||.|+|+||++|+|+||++|++|||+|.
T Consensus 564 G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~ 643 (704)
T 2rdo_7 564 GPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLK 643 (704)
T ss_pred CCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 623 TIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 623 ~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+++..++++.|+|++|++|+++|.++||++|+|.+.+...
T Consensus 644 ~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 683 (704)
T 2rdo_7 644 GQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTME 683 (704)
T ss_pred CceecCCeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEE
Confidence 9999999999999999999999999999999999988764
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-122 Score=1122.92 Aligned_cols=653 Identities=45% Similarity=0.815 Sum_probs=599.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+++|||+|+||+|||||||+++|++.++.+...|.++++.+++||.+.|+++|+|+.+...++.|. ++.++|||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~----~~~i~liD 81 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE----GHRVNIID 81 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET----TEEEEEEC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC----CeeEEEEE
Confidence 57889999999999999999999999999998888888889999999999999999999999999998 89999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++.++++.+|++|+|+|++++++.++..+|+++...++|+++|+||+|+..+++.++++++++.++.++.+
T Consensus 82 TPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~ 161 (693)
T 2xex_A 82 TPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAP 161 (693)
T ss_dssp CCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEE
T ss_pred CcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCceeeEEecccceeeeec-C--CCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWK-E--NSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIK 239 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~ 239 (1021)
.++|+..+..|.|++|++.++.++|+ + ..+...++|+.+.+.+..+|++++|.+++.||++|++||++ +++.+++.
T Consensus 162 ~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~ 241 (693)
T 2xex_A 162 IQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELK 241 (693)
T ss_dssp SEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHH
T ss_pred EEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999999997 4 23677889999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC-----C-cc--cccc-CCCceEEEEEEEeecCC
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN-----N-DY--NINL-NSNKFVSLVFKIFHDPF 310 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~-----~-~~--~~~~-~~~p~~~~V~k~~~~~~ 310 (1021)
..+++++..+.++|+|++||++|.|++.||++|++++|+|.+.+..+ . .. ...| +++||+++|||+++|++
T Consensus 242 ~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~ 321 (693)
T 2xex_A 242 EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPY 321 (693)
T ss_dssp HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETT
T ss_pred HHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCC
Confidence 99999999999999999999999999999999999999998754321 0 01 2234 67899999999999999
Q ss_pred CceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCC
Q psy5021 311 LGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENI 390 (1021)
Q Consensus 311 ~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~ 390 (1021)
+|+++|+|||||+|++||.|++...+++++|.+++.++|++++++++|.||||+++.|++++++|||||+...+..++++
T Consensus 322 ~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~~~~~~ 401 (693)
T 2xex_A 322 VGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESM 401 (693)
T ss_dssp TEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEETTCCEECCCC
T ss_pred CceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEecCCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred cCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEE
Q psy5021 391 ETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVS 470 (1021)
Q Consensus 391 ~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~ 470 (1021)
+++.|+++++|+|++++|++||.++|++|++|||+|++++++||||++|+|||||||||+++||+++||+++.+++|+|+
T Consensus 402 ~~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~ 481 (693)
T 2xex_A 402 EFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVS 481 (693)
T ss_dssp SSCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEEC
T ss_pred CCCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccce
Q psy5021 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPV 550 (1021)
Q Consensus 471 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv 550 (1021)
|||||+++++++++|+||+||++|||+++++++|++ +|+|+.|.+++.++.+|++|+++|++||+||+++||||||||
T Consensus 482 yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~--~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv 559 (693)
T 2xex_A 482 YRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNE--TGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPL 559 (693)
T ss_dssp CEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECC--TTCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCB
T ss_pred EEEEeccccceeEeeccccCCCCceEEEEEEEEECC--CCCCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCce
Confidence 999999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCe
Q psy5021 551 IKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENF 630 (1021)
Q Consensus 551 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~ 630 (1021)
+||+|+|+|+++|++||++++|+.|+++||++|+++|+|+||||||.|+|.||++|+|+||++|++|||+|.+++..+++
T Consensus 560 ~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~ 639 (693)
T 2xex_A 560 IDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNA 639 (693)
T ss_dssp CSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTE
T ss_pred eeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 631 KIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 631 ~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+.|+|++|++|+++|.++||++|+|.+.+...
T Consensus 640 ~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 671 (693)
T 2xex_A 640 QVVNAYVPLSEMFGYATSLRSNTQGRGTYTMY 671 (693)
T ss_dssp EEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEEeCHHHHHhHHHHhHHhcCCceEEEEE
Confidence 99999999999999999999999999988764
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-122 Score=1121.70 Aligned_cols=653 Identities=47% Similarity=0.820 Sum_probs=554.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+++|||+|+||+|||||||+++|++.++.+...|.++.+.+++||++.|+++|+|+.+...++.|. ++.++|||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~----~~~i~liD 83 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK----DHRINIID 83 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET----TEEEEEEC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC----CeEEEEEE
Confidence 56789999999999999999999999999999888888889999999999999999999999999998 89999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++.++++.+|++|+|+|++++++.++..+|+++...++|+++|+||+|+..+++.++++++++.++.++.+
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~ 163 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVV 163 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEE
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCceeeEEecccceeeeec-C--CCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWK-E--NSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIK 239 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~ 239 (1021)
.++|++.++.|.|++|++.++.++|+ + ..+...++|+++.+.+.++|++++|.+++.||+++++||++ +++.+++.
T Consensus 164 ~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~ 243 (691)
T 1dar_A 164 MQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 243 (691)
T ss_dssp CEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHH
T ss_pred eeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHH
Confidence 99999999999999999999999997 3 23667789999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC----Ccc--cccc-CCCceEEEEEEEeecCCCc
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN----NDY--NINL-NSNKFVSLVFKIFHDPFLG 312 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~----~~~--~~~~-~~~p~~~~V~k~~~~~~~g 312 (1021)
..+++++..+.++|+|++||++|.|+++||++|++++|+|.+.+..+ +++ ...| +++|++++|||+++|+++|
T Consensus 244 ~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G 323 (691)
T 1dar_A 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVG 323 (691)
T ss_dssp HHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTE
T ss_pred HHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999998754321 011 2334 6889999999999999999
Q ss_pred eEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCcc-ccccCCc
Q psy5021 313 SLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSEN-IQLENIE 391 (1021)
Q Consensus 313 ~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~-~~~~~~~ 391 (1021)
+++|+|||||+|++||.|++.+.++++++.+++.++|++++++++|.||||+++.|++++.+|||||+...+ ..+++++
T Consensus 324 ~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~l~~~~ 403 (691)
T 1dar_A 324 RLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIE 403 (691)
T ss_dssp EEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCBCC---
T ss_pred cEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCcccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877 8899999
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
++.|+++++|+|+++.|++||.++|++|++|||+|++++++||||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 404 ~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~y 483 (691)
T 1dar_A 404 VPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 483 (691)
T ss_dssp -----------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCCCBCC
T ss_pred CCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhCceEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceE
Q psy5021 472 KESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551 (1021)
Q Consensus 472 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~ 551 (1021)
||||+++++++++|+||+||++|||+|+++++|++ +|+|+.|.+++.++.+|++|+++|++||+||+++||||||||+
T Consensus 484 rEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~--~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~ 561 (691)
T 1dar_A 484 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVV 561 (691)
T ss_dssp EEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECC--TTCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBC
T ss_pred EEeeccceeeeeeeccccCCCCceEEEEEEEEECC--CCCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccCCcee
Confidence 99999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeE
Q psy5021 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFK 631 (1021)
Q Consensus 552 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 631 (1021)
||+|+|+|+++|++||++++|+.|+++||++|+++|+|+||||||.|+|.||++|+|+||++|++|||+|.+++..++++
T Consensus 562 ~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~ 641 (691)
T 1dar_A 562 DIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQ 641 (691)
T ss_dssp SEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETTEE
T ss_pred eEEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 632 IINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 632 ~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
.|+|++|++|+++|.++||++|+|.+.+...
T Consensus 642 ~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 672 (691)
T 1dar_A 642 VIRAFVPLAEMFGYATDLRSKTQGRGSFVMF 672 (691)
T ss_dssp EEEEEEETTTSSSHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEecHHHHhhHHHHHHHhcCCceEEEEE
Confidence 9999999999999999999999999988764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-115 Score=1058.59 Aligned_cols=638 Identities=29% Similarity=0.518 Sum_probs=612.1
Q ss_pred CCC-CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 1 MKN-KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 1 m~~-~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
|.+ +.++.|||+|+||+|||||||+++|++..+.+...|.+.++.+.+|+.+.|+++|+|+.+....+.|. .+.+
T Consensus 1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~----~~~~ 76 (665)
T 2dy1_A 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR----GHRV 76 (665)
T ss_dssp -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET----TEEE
T ss_pred CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC----CEEE
Confidence 555 67889999999999999999999999999888888888888899999999999999999999999998 8999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
||||||||.+|..++.++++.+|++++|+|+++|++.+++.+|+.+...++|+++|+||+|+. .+..+.++++++.++
T Consensus 77 nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~- 154 (665)
T 2dy1_A 77 FLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG- 154 (665)
T ss_dssp EEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-
T ss_pred EEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC-
Confidence 999999999999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDI 238 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~ 238 (1021)
++.+.++|+..+..|.|++|++.++.|+|+++.+...++|+++.+.+..+|++++|.+++.||+++++|+++ +++.+++
T Consensus 155 ~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~ 234 (665)
T 2dy1_A 155 PILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEAL 234 (665)
T ss_dssp SEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHH
T ss_pred CcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHH
Confidence 888999999999999999999999999998776777889999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEE
Q psy5021 239 KNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIR 318 (1021)
Q Consensus 239 ~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~R 318 (1021)
...+++++..+.++|+|++||++|.|+++||++|++++|+|.+.. +++|++++|||++.|+++|+++|+|
T Consensus 235 ~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~----------~~~p~~~~V~k~~~d~~~G~~~~~r 304 (665)
T 2dy1_A 235 EKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERF----------GDGPPLAKVFKVQVDPFMGQVAYLR 304 (665)
T ss_dssp HHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHH----------CSCSCEEEEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccccC----------CCCCeEEEEEEEEEcCCCCeEEEEE
Confidence 999999999999999999999999999999999999999997531 3689999999999999999999999
Q ss_pred EEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCcc--ccccCCcCCCCe
Q psy5021 319 IYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSEN--IQLENIETPIPV 396 (1021)
Q Consensus 319 V~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~--~~~~~~~~~~Pv 396 (1021)
||||+|++||.|++.+ +.++|++++.++|++++++++|.||||+++.|++++.+||||++...+ ..+++++++.|+
T Consensus 305 V~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~ 382 (665)
T 2dy1_A 305 LYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPN 382 (665)
T ss_dssp EEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCCCCCCC
T ss_pred EcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCCCCCce
Confidence 9999999999999887 778999999999999999999999999999999999999999998776 788999999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEEEeecc
Q psy5021 397 ISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIK 476 (1021)
Q Consensus 397 ~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~yrEti~ 476 (1021)
++++|+|.+++|.+||.++|++|++|||+|++.+|+||||++|+|||||||||+++||+ +||+++.+++|+|+|||||+
T Consensus 383 ~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~yrEti~ 461 (665)
T 2dy1_A 383 VPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPYRETIK 461 (665)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCCEEEES
T ss_pred EEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCEEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEE
Q psy5021 477 KIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVF 556 (1021)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~ 556 (1021)
++++++++|+||+||++|||+++++++|++ |+.|.+++.+|.+|++|+++|++||+||+++||||||||+||+|+
T Consensus 462 ~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~-----g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~ 536 (665)
T 2dy1_A 462 KVAEGQGKYKKQTGGHGQYGDVWLRLEPAS-----EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAI 536 (665)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEEEEEEECS-----SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEE
T ss_pred cceeeeeecccccCCCcceEEEEEEEEECC-----CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEE
Confidence 999999999999999999999999999986 799999999999999999999999999999999999999999999
Q ss_pred EEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEE
Q psy5021 557 LVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSY 636 (1021)
Q Consensus 557 l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~ 636 (1021)
|+|+++|++||++++|+.|+++||++|+++|+|+||||||+|+|.||++|+|+||++|++|||+|.+++..++++.|+|+
T Consensus 537 l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~a~ 616 (665)
T 2dy1_A 537 VYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAE 616 (665)
T ss_dssp EEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEE
T ss_pred EEeeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCcccccceeeeeeeeec
Q psy5021 637 IPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 637 ~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+|++|+++|.++||++|+|.+.+...
T Consensus 617 ~P~~e~~~~~~~Lrs~T~G~~~~~~~ 642 (665)
T 2dy1_A 617 VPLAEVLEYYKALPGLTGGAGAYTLE 642 (665)
T ss_dssp EEGGGCTTHHHHHHHHHTTCCEEEEE
T ss_pred ECHHHHhhHHHHhHhhcCCcEEEEEE
Confidence 99999999999999999999987764
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-120 Score=1099.98 Aligned_cols=604 Identities=29% Similarity=0.429 Sum_probs=566.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+||||||+||+|||||||+++|++++|.+.+.|++++|++++||+++|++|||||+++.+++.|+ +++||||||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~----~~~iNlIDTPG 76 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE----NTKVNIIDTPG 76 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS----SCBCCCEECCC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC----CEEEEEEECCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF 166 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 166 (1021)
|.||+.++.++++.+|+||+||||.+|+++||+.+|+++.++++|+++|+||||++++++.++++++++.|+..++..+.
T Consensus 77 H~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 77 HMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp SSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred cHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876543321
Q ss_pred ecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHHHHH
Q psy5021 167 NIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKL 245 (1021)
Q Consensus 167 p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~~~~ 245 (1021)
. ++ |.... ..... ..+++|.+++.||+++++|+++ .++..++...++..
T Consensus 157 ~-----------~~-------~~~~~--~~~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~ 206 (638)
T 3j25_A 157 V-----------EL-------YPNVC--VTNFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 206 (638)
T ss_dssp C-----------CS-------CGGGC--CCCCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHH
T ss_pred e-----------Ee-------ecccc--ccccc----------hhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhh
Confidence 1 11 11000 00000 1245678888999999999999 89999999999999
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEe
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIK 325 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~ 325 (1021)
+..+.++|+|++||++|.|+++||++|++++|+|... .++|+.++|||+.+|+++|+++|+|||||+|+
T Consensus 207 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~-----------~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~ 275 (638)
T 3j25_A 207 FQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR-----------GPSELCGNVFKIEYTKKRQRLAYIRLYSGVLH 275 (638)
T ss_dssp HHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGG-----------SCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCC
T ss_pred hcccccccccccccccCCCchhHhhhhhccccCcccc-----------hhhhhcceeeeeeeeccCceEEEEEEEcCccc
Confidence 9999999999999999999999999999999999875 57899999999999999999999999999999
Q ss_pred cCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCcCCCCeEEEEEEeCC
Q psy5021 326 VGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIF 405 (1021)
Q Consensus 326 ~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~~~~Pv~~~~iep~~ 405 (1021)
+||.|++...+ ++++.+++.++|+++.++++|.||||+++.| ..+.+|+|+++....+.++++.+|+|+++++|+|.+
T Consensus 276 ~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv~~~aiep~~ 353 (638)
T 3j25_A 276 LRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSK 353 (638)
T ss_dssp SCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCCCCCEEECCS
T ss_pred CCCccccccCc-ceeEEeeecccccccccccccccceEEEEec-cccccCceecCCCCcccccCccCCCccceeeeccCC
Confidence 99999887654 5789999999999999999999999999988 568889999998888888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEEEeecccceeeeeEE
Q psy5021 406 KNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQEGKY 485 (1021)
Q Consensus 406 ~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~ 485 (1021)
+.|++||.++|++|++|||+++++++++|||++|+|||||||||+++||+++||+++.+|+|+|+|||||.+.++ +++
T Consensus 354 ~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~~--~~~ 431 (638)
T 3j25_A 354 PEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAE--YTI 431 (638)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCCE--ECC
T ss_pred hHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccce--EEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764 678
Q ss_pred EecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccC
Q psy5021 486 IKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSV 565 (1021)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~ 565 (1021)
++|++|++||++|+++++|++ +++|+.|.+++.++.+|++|+++|++||+|++++| |+||||+|++|+|+|+++|++
T Consensus 432 ~~~~~~~~~~~~v~~~~eP~~--~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~dg~~h~~ 508 (638)
T 3j25_A 432 HIEVPPNPFWASIGLSVSPLP--LGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSP 508 (638)
T ss_dssp CCCSSSCCCCCCCCEECCCCC--SSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCCCCCCSSC
T ss_pred EEecCCCCceEEEEEEEeccc--CCCCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEEEEECcccCC
Confidence 899999999999999999999 89999999999999999999999999999999999 999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccC
Q psy5021 566 DSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGY 645 (1021)
Q Consensus 566 ~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~ 645 (1021)
||++++|+.|+++||++|+.+|+|+||||||.|+|+||++|+|+||++|++|||+|.+++..+++++|+|++|++|++||
T Consensus 509 ~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a~vP~~e~~gy 588 (638)
T 3j25_A 509 VSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEY 588 (638)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCTTEEEEECCCSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecCCeEEEEEEECHHHhhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccceeeeeeeeec
Q psy5021 646 STDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 646 ~~~l~~~t~g~~g~~~~ 662 (1021)
.++||++|+|.+.+...
T Consensus 589 ~~~Lrs~T~G~a~~~~~ 605 (638)
T 3j25_A 589 RSDLTFFTNGRSVCLTE 605 (638)
T ss_dssp HHHHHHTTTTCCEEECC
T ss_pred HHHHHhhCCCcEEEEEE
Confidence 99999999999988764
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-105 Score=995.24 Aligned_cols=641 Identities=24% Similarity=0.355 Sum_probs=537.0
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----------
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------- 72 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------- 72 (1021)
+.+++|||+|+||+|||||||+++|++.++.+...+ ..+++++|++++|++||+|+.++..++.|..
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~ 92 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQK 92 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC--------------------CCCBCCCEEEEEEECCHHHHHHCSSC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--CCCceeecCchhhhhcceeEeeceeEEEeccccccccccccc
Confidence 457899999999999999999999999988887654 4457899999999999999999999999972
Q ss_pred -ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-------
Q psy5021 73 -NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA------- 144 (1021)
Q Consensus 73 -~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~------- 144 (1021)
++.++.++|||||||.+|..++.++++.+|++|+|+|+++|++.|++.+|+++...++|+++|+||+|+...
T Consensus 93 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~ 172 (842)
T 1n0u_A 93 TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKE 172 (842)
T ss_dssp CCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHH
T ss_pred ccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHH
Confidence 345789999999999999999999999999999999999999999999999999999999999999999732
Q ss_pred ----CHHHHHHHHHHHhC-----------CceeeeeeecccC----------------CceeeEEecccceee---eecC
Q psy5021 145 ----NYNNCIIDIKKKFN-----------CIVLPINFNIGIE----------------ENYEGIVDIINKKSF---FWKE 190 (1021)
Q Consensus 145 ----~~~~~~~~i~~~l~-----------~~~~~~~~p~~~~----------------~~~~g~id~~~~~~~---~~~~ 190 (1021)
++.+.+++++..++ ..+.+.++|++++ +.|.+.++.+.++.| +|++
T Consensus 173 e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~ 252 (842)
T 1n0u_A 173 DLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNP 252 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEET
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccC
Confidence 25666777777752 4455567787665 334333444444445 5554
Q ss_pred CC--eeeccC-------ChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC---CCCHHHHH---HHHHHHHhcCceeEEE
Q psy5021 191 NS--IIIKNI-------DKDQLSAFDYYNELMLETLSNNDEFFLEKYINN---NYSINDIK---NSIRKLVLKNKIIPIM 255 (1021)
Q Consensus 191 ~~--~~~~~~-------~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~---~~~~~~~~---~~~~~~~~~~~~~Pv~ 255 (1021)
.. +...++ ...+.+++.+++++|+|++++.|+++|++||++ .++.+++. ..+++++ .+.|+|+
T Consensus 253 ~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~~~~pv- 330 (842)
T 1n0u_A 253 KTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MRKFLPA- 330 (842)
T ss_dssp TTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HHHHSBH-
T ss_pred CCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHH-Hhhccch-
Confidence 22 333333 335777889999999999999999999999986 68888887 7888888 6688997
Q ss_pred eccccCcccHHHHHHHHHHhCCCCccccccC-----C----c----ccccc-CCCceEEEEEEEeecCCCce-EEEEEEE
Q psy5021 256 CGSSLKNKGIEFLLNSICEYLPSPYDVDFKN-----N----D----YNINL-NSNKFVSLVFKIFHDPFLGS-LSFIRIY 320 (1021)
Q Consensus 256 ~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~-----~----~----~~~~~-~~~p~~~~V~k~~~~~~~g~-~~~~RV~ 320 (1021)
+++|||+|++++|+|.+.+..+ . + ....| +++|++++|||+..+++.|+ ++|+|||
T Consensus 331 ---------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~ 401 (842)
T 1n0u_A 331 ---------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVF 401 (842)
T ss_dssp ---------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEE
T ss_pred ---------HHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEE
Confidence 7999999999999998653211 0 0 01234 78999999999999999995 9999999
Q ss_pred eeEEecCCEEE------eCCCce---eeEeceEEEeecCCeeccccccCCCEEEEecCCccccC-CeeccCCccccccCC
Q psy5021 321 SGFIKVGDLVY------NSTKKV---KEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTG-DTLCSLSENIQLENI 390 (1021)
Q Consensus 321 sG~l~~gd~v~------~~~~~~---~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~g-dtl~~~~~~~~~~~~ 390 (1021)
||+|++||.|+ |.+.++ .++|++|+.++|++++++++|.|||||++.|++++.+| +|||+...+..++++
T Consensus 402 sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~~ 481 (842)
T 1n0u_A 402 AGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVM 481 (842)
T ss_dssp ESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCCC
T ss_pred eeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccccccC
Confidence 99999999994 444444 68999999999999999999999999999999998654 699998878888999
Q ss_pred cCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc-CeeeEEeCCe
Q psy5021 391 ETP-IPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQ 468 (1021)
Q Consensus 391 ~~~-~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~-~v~v~~~~p~ 468 (1021)
.++ .|+++++|+|+++.|++||.+||++|++|||+|+++++ ||||++|+|||||||||+++||+++| |+++.+++|+
T Consensus 482 ~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P~ 560 (842)
T 1n0u_A 482 KFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPV 560 (842)
T ss_dssp CCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCC
T ss_pred CCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCcE
Confidence 988 69999999999999999999999999999999999998 89999999999999999999999999 9999999999
Q ss_pred EEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCC-----------------------------------------
Q psy5021 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISL----------------------------------------- 507 (1021)
Q Consensus 469 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~----------------------------------------- 507 (1021)
|+|||||+++++..+..+ ..+ .+.+++++++|+++
T Consensus 561 V~yrETi~~~~~~~~~~~-~~~---~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~ 636 (842)
T 1n0u_A 561 VAYRETVESESSQTALSK-SPN---KHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCF 636 (842)
T ss_dssp CCCEEEESSCCSSCEEEE-CTT---SSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEE
T ss_pred EEEEEeeccccccceeec-cCC---cceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeee
Confidence 999999998876533322 112 23478999999862
Q ss_pred --CCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCCC--HHHHHHHHHHHHHHH
Q psy5021 508 --ENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSS--EYAFKNAAAIALKDA 583 (1021)
Q Consensus 508 --~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~--~~~~~~a~~~a~~~a 583 (1021)
+.+.+|.|.+.+.++.++++|+++|++||+||+++||||||||+||+|+|+|+++|...++ .++|+.|+++||++|
T Consensus 637 ~p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a 716 (842)
T 1n0u_A 637 GPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAG 716 (842)
T ss_dssp SSTTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHH
Confidence 0125799999999999999999999999999999999999999999999999999965444 788999999999999
Q ss_pred HHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC--CeEEEEEEcchhhhccCCcccccceeeeeeeee
Q psy5021 584 LKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE--NFKIINSYIPLRELFGYSTDLRSNTKGTIGHVD 661 (1021)
Q Consensus 584 ~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~ 661 (1021)
+++|+|+||||||.|+|+||++++|+||+||++|||+|+++++.+ +.+.|+|++|++|+|||+++||++|+|.+.+.+
T Consensus 717 ~~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~ 796 (842)
T 1n0u_A 717 FLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQM 796 (842)
T ss_dssp HHHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEE
T ss_pred HHhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEE
Confidence 999999999999999999999999999999999999999998865 469999999999999999999999999998776
Q ss_pred c
Q psy5021 662 H 662 (1021)
Q Consensus 662 ~ 662 (1021)
.
T Consensus 797 ~ 797 (842)
T 1n0u_A 797 V 797 (842)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-91 Score=827.53 Aligned_cols=479 Identities=23% Similarity=0.359 Sum_probs=397.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCC----cccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHG----TTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
..+++|||||+||+|||||||+++||+++|++.+.|.++++ .+++||+++|++|||||+++.+++.|+ +++|
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~----~~~i 102 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR----DRVV 102 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET----TEEE
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC----CEEE
Confidence 35689999999999999999999999999999999999876 489999999999999999999999999 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
||||||||.||+.++.++|+++|+||+||||.+|+++||+.+|++|.++++|+++||||||++++++.++++++++.|+.
T Consensus 103 NlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~ 182 (548)
T 3vqt_A 103 NLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQI 182 (548)
T ss_dssp EEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTS
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCe----eeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC--CC
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSI----IIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN--NY 233 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~--~~ 233 (1021)
+++++++|++.++.|.|++|+++++.+.|++... ....+.....+...+ .++...+.....++.+.+. ..
T Consensus 183 ~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~ 258 (548)
T 3vqt_A 183 ECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDE----YLGDQAEQLRMDLALLEEAGTPF 258 (548)
T ss_dssp EEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHH----HHGGGHHHHHHHHHHHHHHCCCC
T ss_pred ceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHH----HHHHHHHHhhhHHHHHhhccCch
Confidence 9999999999999999999999999999986541 111111100000110 0111110001111111111 11
Q ss_pred CHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeec---CC
Q psy5021 234 SINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHD---PF 310 (1021)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~---~~ 310 (1021)
. .++++++.++||||+||++|.|+++|||+|++++|+|.+.+... ......+.||.++|||+..+ ++
T Consensus 259 ~--------~e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~--~~~~~~~~p~~a~vfKi~~~~~~~~ 328 (548)
T 3vqt_A 259 D--------EERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAAT--RVVEPGEEAFTGVVFKIQANMDKAH 328 (548)
T ss_dssp C--------HHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSS--SEECTTCSSCEEEEEEEECC-----
T ss_pred h--------HHHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccc--cccCCCCcCceEEEEEEEccCCcCC
Confidence 1 23456789999999999999999999999999999998754221 00011567999999999877 89
Q ss_pred CceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCC
Q psy5021 311 LGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENI 390 (1021)
Q Consensus 311 ~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~ 390 (1021)
.|+++|+|||||+|++||.|++.+.++++++.+++.++|++++++++|.|||||+|.|++++.+|||||+...+..++++
T Consensus 329 ~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~~~~i 408 (548)
T 3vqt_A 329 RDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGI 408 (548)
T ss_dssp --CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCCBCCC
T ss_pred CCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred cCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeE-----Ee
Q psy5021 391 ETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTK-----IS 465 (1021)
Q Consensus 391 ~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~-----~~ 465 (1021)
+++.|+++++|+|+++.|.+||.++|++|+++|| +.+.++++|||++|+|||||||||+++||+++||+++. ++
T Consensus 409 ~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~-~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~~e~v~~~ 487 (548)
T 3vqt_A 409 PNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGA-VQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTH 487 (548)
T ss_dssp EEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-SEEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEEEECSCC
T ss_pred CCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCc-eeEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEEEeecccc
Confidence 9999999999999999999999999999999998 55667999999999999999999999999999999966 57
Q ss_pred CCeEEEEeecccceeeeeEEEecCCCCceeEEEEEE
Q psy5021 466 KPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIR 501 (1021)
Q Consensus 466 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1021)
.|+|+|||||++.+++.++|+||+||++|++.|.|.
T Consensus 488 ~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~ 523 (548)
T 3vqt_A 488 TARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLA 523 (548)
T ss_dssp EEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEE
T ss_pred CceEEecCCccchhhhhhhhhheeeecCCCCEEEEe
Confidence 899999999999999999999999999999999874
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-76 Score=697.10 Aligned_cols=461 Identities=25% Similarity=0.435 Sum_probs=388.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~li 82 (1021)
+.+++|||+|+||+|||||||+++|++.++.+...+ .+.+++|+++.|++||+|++++.+++.|.. ++..+.++||
T Consensus 2 ~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inli 78 (600)
T 2ywe_A 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE---KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLI 78 (600)
T ss_dssp CGGGEEEEEEECC--CCHHHHHHHHHHHHTC--------------------------CCCCSEEEEEECTTSCEEEEEEE
T ss_pred CccCceEEEEECCCCCCHHHHHHHHHhccCCccccc---ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEE
Confidence 467899999999999999999999999888776532 257899999999999999999999999985 4556899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCcee
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 162 (1021)
|||||.||..++.++++.+|++|+|+|+++|++.|+.++|..+...++|+++|+||+|++.+++++..+++.+.++.++
T Consensus 79 DTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~- 157 (600)
T 2ywe_A 79 DTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDP- 157 (600)
T ss_dssp CCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCG-
T ss_pred ECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999998888777777776654310
Q ss_pred eeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~ 242 (1021)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T 2ywe_A 158 -------------------------------------------------------------------------------- 157 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEee
Q psy5021 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSG 322 (1021)
Q Consensus 243 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG 322 (1021)
.+++++||++|.|+++|+++|++++|+|... +++|+.++|||+++|++.|.++++||++|
T Consensus 158 ---------~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~-----------~~~pl~~lV~~~~~d~~~G~v~~~rV~sG 217 (600)
T 2ywe_A 158 ---------EEAILASAKEGIGIEEILEAIVNRIPPPKGD-----------PQKPLKALIFDSYYDPYRGAVAFVRIFDG 217 (600)
T ss_dssp ---------GGCEECBTTTTBSHHHHHHHHHHHSCCCCCC-----------TTSCCEEEEEEEEEETTTEEEEEEEEEES
T ss_pred ---------ccEEEEEeecCCCchHHHHHHHHhccccccc-----------ccCCcceeEEEEeecccceEEEEEEEEeC
Confidence 1268899999999999999999999999764 57899999999999999999999999999
Q ss_pred EEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe-c---CCccccCCeeccCCcc--ccccCCcCCCCe
Q psy5021 323 FIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV-G---LKESSTGDTLCSLSEN--IQLENIETPIPV 396 (1021)
Q Consensus 323 ~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~gdtl~~~~~~--~~~~~~~~~~Pv 396 (1021)
++++||.|++.+.++.+++.+++.+.+ +..+++++.||||+++. | ++++.+||||+....+ ..++++++++|+
T Consensus 218 ~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~ 296 (600)
T 2ywe_A 218 EVKPGDKIMLMSTGKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPM 296 (600)
T ss_dssp EECTTCEEEETTTTEEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCSSCCSCCCCCCCC
T ss_pred EEecCCEEEeccccceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCccccccCCCCCCCcE
Confidence 999999999999999999999998876 48899999999999884 4 5579999999987766 468888999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEe-----cChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 397 ISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSG-----MGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 397 ~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g-----~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
++++|+|.++.|.++|.++|++|.+|||+|+++ +||+|.++.| ||||||||+++||+++||+++.+++|+|+|
T Consensus 297 v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v~~~~P~V~y 374 (600)
T 2ywe_A 297 VYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIY 374 (600)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECE
T ss_pred EEEEeeccccccHHHHHHHHHHHhhhCCEEEEE--ECCccccccceEEEeccHHHHHHHHHHHHhhcCceEEEEeeeEEE
Confidence 999999999999999999999999999999997 5789877777 999999999999999999999999999999
Q ss_pred EeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceE
Q psy5021 472 KESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551 (1021)
Q Consensus 472 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~ 551 (1021)
|||+++. |. .+.|.+ | +|+|+.
T Consensus 375 reti~~~------------g~-------------------~~~~~~--------------------------p-~~~p~~ 396 (600)
T 2ywe_A 375 RVKKKFT------------DE-------------------VIEVRN--------------------------P-MDFPDN 396 (600)
T ss_dssp EEEETTC------------SS-------------------CEEESS--------------------------G-GGSCSC
T ss_pred EEEecCC------------Cc-------------------EEEEeC--------------------------h-hhCCCC
Confidence 9998741 11 111111 1 467766
Q ss_pred EEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeec-CCe
Q psy5021 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDH-ENF 630 (1021)
Q Consensus 552 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~ 630 (1021)
| + .-+.||||||+++|.+|++|+|+||++|++|||++.+++.. +++
T Consensus 397 ~----------~-----------------------~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~~~ 443 (600)
T 2ywe_A 397 A----------G-----------------------LIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNT 443 (600)
T ss_dssp G----------G-----------------------GEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEETTE
T ss_pred C----------c-----------------------ccccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCCCE
Confidence 5 1 11489999999999999999999999999999999999985 468
Q ss_pred EEEEEEcchhhh-ccCCcccccceeeeeeeeec
Q psy5021 631 KIINSYIPLREL-FGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 631 ~~i~a~~P~~e~-~~~~~~l~~~t~g~~g~~~~ 662 (1021)
..|+|.+|++|+ ++|.++|+++|.|.+.+...
T Consensus 444 ~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~ 476 (600)
T 2ywe_A 444 VYLEYEMPLSEIIVDFHDKIKSISRGFASYDYE 476 (600)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEE
Confidence 999999999999 89999999999999887653
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-74 Score=683.31 Aligned_cols=457 Identities=26% Similarity=0.418 Sum_probs=381.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDT 84 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDt 84 (1021)
+++|||+|+||+|||||||+++|++.++.+... ..+.+++|+++.|++||+|+.+..+++.|.. ++..+.++||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~---~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDT 78 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR---EMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDT 78 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC-----------------------------CEEEEEEECTTSCEEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccc---cccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEEC
Confidence 689999999999999999999999988887653 2357899999999999999999999999985 455699999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeee
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPI 164 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 164 (1021)
|||.||..++.++++.+|++|+|+|+++|++.|+...|..+...++|+++|+||+|++.+++++..+++.+.++.++
T Consensus 79 PGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~--- 155 (599)
T 3cb4_D 79 PGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA--- 155 (599)
T ss_dssp CCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC---
T ss_pred CCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc---
Confidence 99999999999999999999999999999999999999999999999999999999998888877777777664320
Q ss_pred eeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHH
Q psy5021 165 NFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRK 244 (1021)
Q Consensus 165 ~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~ 244 (1021)
T Consensus 156 -------------------------------------------------------------------------------- 155 (599)
T 3cb4_D 156 -------------------------------------------------------------------------------- 155 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEE
Q psy5021 245 LVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFI 324 (1021)
Q Consensus 245 ~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l 324 (1021)
.+++++||++|.|+++|+++|.+++|+|... +++|+.++||++++|++.|+++++||++|+|
T Consensus 156 -------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~-----------~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l 217 (599)
T 3cb4_D 156 -------TDAVRCSAKTGVGVQDVLERLVRDIPPPEGD-----------PEGPLQALIIDSWFDNYLGVVSLIRIKNGTL 217 (599)
T ss_dssp -------TTCEEECTTTCTTHHHHHHHHHHHSCCCCCC-----------TTSCCEEEEEEEEEETTTEEEEEEEEEESCE
T ss_pred -------ceEEEeecccCCCchhHHHHHhhcCCCcccc-----------ccCCceeeeeeccccccccEEEEEEEEeCEE
Confidence 1267889999999999999999999999764 5789999999999999999999999999999
Q ss_pred ecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe-c---CCccccCCeeccCCcc--ccccCCcCCCCeEE
Q psy5021 325 KVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV-G---LKESSTGDTLCSLSEN--IQLENIETPIPVIS 398 (1021)
Q Consensus 325 ~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~gdtl~~~~~~--~~~~~~~~~~Pv~~ 398 (1021)
++||.+.+..+++.+++.+++.+.+. ..+++++.||||+++. | ++++.+||||+....+ ..++++..+.|+++
T Consensus 218 ~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~ 296 (599)
T 3cb4_D 218 RKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVY 296 (599)
T ss_dssp ESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCSSCCTTCCCCCCCEE
T ss_pred ecCCEEEeccccceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEeeecCCccccccccccCCCcceE
Confidence 99999999999999999999988765 8899999999999884 5 4578999999987766 56888899999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEe-----cChhHHHHHHHHHHhhcCeeeEEeCCeEEEEe
Q psy5021 399 ISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSG-----MGELHLEIIVDRILKENNIKTKISKPQVSYKE 473 (1021)
Q Consensus 399 ~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g-----~GelhLei~~~rL~~~~~v~v~~~~p~V~yrE 473 (1021)
++++|.+..|.++|.++|++|.++||+|.+. ++|+|+++.| ||||||||+++||+++||+++.+++|+|+|||
T Consensus 297 ~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~~~~~P~V~yre 374 (599)
T 3cb4_D 297 AGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEV 374 (599)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCEEECCCEECEEE
T ss_pred EEEEecCccCHHHHHHHHHHHHhhCcEEEEE--eccccccccceEEEeccHHHHHHHHHHHHHHcCceEEEEeeeEEEEE
Confidence 9999999999999999999999999999997 5789877777 99999999999999999999999999999999
Q ss_pred ecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEE
Q psy5021 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKI 553 (1021)
Q Consensus 474 ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v 553 (1021)
|+++ |+++.|.+ |. ++|..
T Consensus 375 ti~~--------------------------------g~~~~~~~-------p~--------------------~~p~~-- 393 (599)
T 3cb4_D 375 ETTS--------------------------------REVIYVDS-------PS--------------------KLPAV-- 393 (599)
T ss_dssp EESS--------------------------------SCEEEESS-------GG--------------------GSCCG--
T ss_pred EecC--------------------------------CceEEecC-------hh--------------------hCCCc--
Confidence 9864 12233332 11 22211
Q ss_pred EEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEE
Q psy5021 554 KVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKII 633 (1021)
Q Consensus 554 ~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i 633 (1021)
++ -+.||||||+++|.+|++|+|+||++|++|||++.+++..+++..|
T Consensus 394 ---------~~-----------------------~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~~~~~i 441 (599)
T 3cb4_D 394 ---------NN-----------------------IYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVAL 441 (599)
T ss_dssp ---------GG-----------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCTTEEEE
T ss_pred ---------cc-----------------------cchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecCCeEEE
Confidence 00 1379999999999999999999999999999999999998889999
Q ss_pred EEEcchhhh-ccCCcccccceeeeeeeeec
Q psy5021 634 NSYIPLREL-FGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 634 ~a~~P~~e~-~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+|.+|++|+ ++|.++|+|+|.|.+.+...
T Consensus 442 ~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~ 471 (599)
T 3cb4_D 442 TYEIPMAEVVLDFFDRLKSTSRGYASLDYN 471 (599)
T ss_dssp EEEEEHHHHHTTTHHHHHHHTTSCCEEEEE
T ss_pred EEEecHHHHHHHHHHhhhhcCCcEEEEEEE
Confidence 999999999 89999999999999888764
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-73 Score=673.32 Aligned_cols=457 Identities=25% Similarity=0.395 Sum_probs=398.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccC----CcccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHH----GTTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~----~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
+.+++|||+|+||+|||||||+++|++.++.+...|.+.. +.+++|+++.|+++|+|+.++...+.|. ++.+
T Consensus 9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~----~~~i 84 (528)
T 3tr5_A 9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK----DYLI 84 (528)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET----TEEE
T ss_pred hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC----CEEE
Confidence 4568999999999999999999999999999988888765 4678999999999999999999999998 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
+|||||||.+|..++.++++.+|++|+|+|+++|++.++..+|+.+...++|+++|+||+|+.+++..+.++++++.++.
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~ 164 (528)
T 3tr5_A 85 NLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRI 164 (528)
T ss_dssp EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred EEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCC---eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENS---IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSI 235 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~ 235 (1021)
.+.++++|++.++.|.|++|+++++.+.|+++. ....+++++..+. ..++.+. ++ +++|+++ ++..
T Consensus 165 ~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~-------~~-~~~~~e~~~l~~ 234 (528)
T 3tr5_A 165 HCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNP--ELDKKLG-------DL-ASELRNEIELVK 234 (528)
T ss_dssp EEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCH--HHHHHHT-------HH-HHHHHHHHHHHH
T ss_pred CceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchH--HHHHHHH-------HH-HHHHhhhcchhh
Confidence 999999999999999999999999999997543 1112222222111 1222221 11 4555543 2222
Q ss_pred HHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEee--cC-CCc
Q psy5021 236 NDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFH--DP-FLG 312 (1021)
Q Consensus 236 ~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~--~~-~~g 312 (1021)
++.....++++..+.++|||++||++|.||++||++|++++|+|...+... ......++|++++|||+.. || ++|
T Consensus 235 ~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~--~~~~~~~~~~~~~VFKi~~~~dp~~~g 312 (528)
T 3tr5_A 235 GASHPFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS--RLVKPEEEKFSGFVFKIQANMDPGHRD 312 (528)
T ss_dssp HHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS--SCBCTTSSSCEEEEEEEEECCC-CCCC
T ss_pred hhhhHHHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccc--eeeCCCcccceeEEEEEecccCccCCc
Confidence 221122277788899999999999999999999999999999998753211 0011146899999999985 88 899
Q ss_pred eEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCcC
Q psy5021 313 SLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIET 392 (1021)
Q Consensus 313 ~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~~ 392 (1021)
+++|+|||||+|++||.|++.+.++++++.+++.++|++++++++|.||||+++.|++++++|||||+. .+..++++++
T Consensus 313 ~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~-~~~~~~~~~~ 391 (528)
T 3tr5_A 313 RIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQG-ERFKFTGIPN 391 (528)
T ss_dssp EEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESS-CCCCBCCCEE
T ss_pred eEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCC-CCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999984 5567788888
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEEE
Q psy5021 393 PIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYK 472 (1021)
Q Consensus 393 ~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~yr 472 (1021)
+.|+++++|+|+++.|.+||.+||++|++|||+ ++..+++|||++|+|||||||||+++||+++||+++.+++|+|+|+
T Consensus 392 ~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~v~~~ 470 (528)
T 3tr5_A 392 FASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVNVVTA 470 (528)
T ss_dssp ECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCSCCEE
T ss_pred CCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCceEEE
Confidence 899999999999999999999999999999996 7888999999999999999999999999999999999999999999
Q ss_pred eecccc
Q psy5021 473 ESIKKI 478 (1021)
Q Consensus 473 Eti~~~ 478 (1021)
|+|...
T Consensus 471 ~~i~~~ 476 (528)
T 3tr5_A 471 RWVICD 476 (528)
T ss_dssp EEEECS
T ss_pred EEecCC
Confidence 999753
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-73 Score=667.10 Aligned_cols=457 Identities=22% Similarity=0.379 Sum_probs=372.1
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCC----cccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHG----TTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
+.+++|||+|+||+|||||||+++|++..+.+...|.+..+ .+++||++.|+++|+|+.++...+.|. ++.+
T Consensus 9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~----~~~i 84 (529)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH----DCLV 84 (529)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET----TEEE
T ss_pred hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC----CeEE
Confidence 35689999999999999999999999988888777776553 678999999999999999999999998 8999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
+|||||||.+|..++.++++.+|++|+|+|+++|++.+++.+|+.+...++|+++|+||+|+..++..+.++++++.++.
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~ 164 (529)
T 2h5e_A 85 NLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKI 164 (529)
T ss_dssp EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred EEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCC--C-eee-ccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCC
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKEN--S-III-KNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYS 234 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~--~-~~~-~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~ 234 (1021)
.+.++++|++++..|.|+.|++++..+.|.+. . ... .++|. ..+. .+.+. .++.++++|+++ ++.
T Consensus 165 ~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~-~~~~------~l~e~---~~~~~~~~~~e~~~l~ 234 (529)
T 2h5e_A 165 GCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKG-LNNP------DLDAA---VGEDLAQQLRDELELV 234 (529)
T ss_dssp EEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECC-SSCH------HHHHH---HCHHHHHHHHHHHHHH
T ss_pred CccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCC-CCHH------HHHHh---hCHHHHHHhhcccchh
Confidence 99999999999999999999999999999652 1 111 22221 1111 12222 267788888876 444
Q ss_pred HHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEee---cCCC
Q psy5021 235 INDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFH---DPFL 311 (1021)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~---~~~~ 311 (1021)
.+++...+++++..+.++|||+|||++|.||++||++|++++|+|...+... ......++||+++|||+.. ++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~--~~~~~~~~~~~~~vfKi~~~~d~~~~ 312 (529)
T 2h5e_A 235 KGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDT--RTVEASEDKFTGFVFKIQANMDPKHR 312 (529)
T ss_dssp HHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSS--CEECTTCCSCEEEEEEECSSCCSSSS
T ss_pred hhhhhhhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccc--cccCCCCCCeEEEEEEEeeccCcCCC
Confidence 4444444667888899999999999999999999999999999998653210 0011136899999999986 4678
Q ss_pred ceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCc
Q psy5021 312 GSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIE 391 (1021)
Q Consensus 312 g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~ 391 (1021)
|+++|+||+||+|++||.|++.+.++.++|++++.++|.+++++++|.||||+++.|++++++|||||+.. +..+++++
T Consensus 313 G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~~~~~ 391 (529)
T 2h5e_A 313 DRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKFTGIP 391 (529)
T ss_dssp CCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCBCCCE
T ss_pred ceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-ccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 56788889
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
+++|+++++|+|+++.|.+||.+||++|++||| +++.++++|||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 392 ~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~~v~y 470 (529)
T 2h5e_A 392 NFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVAT 470 (529)
T ss_dssp EECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECCCCSE
T ss_pred CCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecCceeE
Confidence 999999999999999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred Eeecccc
Q psy5021 472 KESIKKI 478 (1021)
Q Consensus 472 rEti~~~ 478 (1021)
||||...
T Consensus 471 ~eti~~~ 477 (529)
T 2h5e_A 471 ARWVECA 477 (529)
T ss_dssp EEEEECS
T ss_pred EEEEcCC
Confidence 9999654
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-55 Score=500.31 Aligned_cols=368 Identities=55% Similarity=0.938 Sum_probs=324.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.++++|++|||||||+++|++.....+...+...+.+|...+|+++|+|++.....++.++..++|||||||++|.++
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 35789999999999999999997533222222222234688889999999999999889888899999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
|..+++.+|++|+|||+++|.+.|+++|+.++..+++|++|+++||+|+.++++.++.+.+++.++++.+++..+.++++
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 162 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPII 162 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEE
Confidence 99999999999999999999999999999999999999888999999998645566777788889998888866678999
Q ss_pred EecccccccCCCCCccCcc-h-HHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEe
Q psy5021 811 IGSALLALEGKDDNQLGTT-S-IKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIV 888 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~-~-i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~ 888 (1021)
++||++|.|+.+ ..|+ + +.+|+++|.+.+|.|.+..+.|++++|+++|+++|.|+|++|+|.+|+|++||+|.+.
T Consensus 163 ~~SA~~g~n~~~---~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 163 VGSALCALEQRD---PELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp ECCHHHHHTTCC---TTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred EeehhhcccccC---CCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEe
Confidence 999999865421 2232 4 7899999999888888888999999999999999999999999999999999999999
Q ss_pred ecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCC
Q psy5021 889 GYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNG 968 (1021)
Q Consensus 889 p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G 968 (1021)
|.+...+++|++|++++.++++|.|||+|++.|++++..++++||+|++++++.++++|+|++.|++++.++..+||..|
T Consensus 240 ~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~g 319 (397)
T 1d2e_A 240 GHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSH 319 (397)
T ss_dssp ETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCCEEEEEEEEEECCGGGTSCSSCBCTT
T ss_pred CCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCCCCCCcccEEEEEEEEeccccccCccccCCC
Confidence 87545678999999999999999999999999999999999999999998888889999999999998654445799999
Q ss_pred CEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 969 YKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
|++++|+++.+++|++.+.+.++.+++||.+.|+|++.+|+|++.|+||+||+
T Consensus 320 ~~~~~~~~t~~~~~~i~l~~~~~~l~~~~~~~v~~~~~~p~~~~~~~r~~lr~ 372 (397)
T 1d2e_A 320 FMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRD 372 (397)
T ss_dssp CCCEEEETTEEEEEEEECCSSCCCBCTTCEEEEEEEEEEEECCCTTCEEEEEE
T ss_pred CEEEEEEecCEEEEEEEEcCCcccccCCCEEEEEEEECCeEEEccCCeEEEEe
Confidence 99999999999999888766678999999999999999999999999999995
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-54 Score=497.88 Aligned_cols=362 Identities=27% Similarity=0.388 Sum_probs=318.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc---------------cccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG---------------GEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~---------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..+..+++|++|+|||||+|+|++....+.. +.+...+.+|+.++|+++|+|++.....++++++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 4578899999999999999999765433322 2233445689999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc---hhh
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQ---DKE 784 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~ 784 (1021)
.++|||||||++|.++|..+++.+|++||||||++|.+ .|+++|+.++..+++|++|||+||||+.. .+.
T Consensus 96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~ 175 (439)
T 3j2k_7 96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNE 175 (439)
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHH
Confidence 99999999999999999999999999999999999986 79999999999999999999999999964 345
Q ss_pred HHHHHHHHHHHhhhccccCCC-ceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEe
Q psy5021 785 LLDLVEMEIRELLTEYDFDGE-NTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFS 862 (1021)
Q Consensus 785 ~~~~~~~~~~~~l~~~~~~~~-~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~ 862 (1021)
+++.+.+++..+++.+++... .++++++||++|.+..... ...|+..+.|++.|.. ++.|.+..+.|++|+|+++|+
T Consensus 176 ~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~r~~v~~~~~ 254 (439)
T 3j2k_7 176 RYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDN-LPNFNRSVDGPIRLPIVDKYK 254 (439)
T ss_pred HHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHh-CCCCccCCCCCeEEEEEEEEc
Confidence 678888899999999998643 6899999999987654432 4578888889998876 677778889999999999986
Q ss_pred eCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-c
Q psy5021 863 ISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-I 941 (1021)
Q Consensus 863 v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~ 941 (1021)
|.|+|++|+|++|+|++||.|.+.|.+. +++|++|++++.++++|.|||+|+|+|++++..+++||||||+++. +
T Consensus 255 --~~G~v~~G~v~~G~l~~Gd~v~~~p~~~--~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~ 330 (439)
T 3j2k_7 255 --DMGTVVLGKLESGSIFKGQQLVMMPNKH--NVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNLC 330 (439)
T ss_pred --CCCeEEEEEEEeeEEecCCEEEEccCCc--eEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCCCC
Confidence 8999999999999999999999998764 5899999999999999999999999999999999999999999875 5
Q ss_pred cceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc-------------CCCcccccCCCeEEEEEEEcee
Q psy5021 942 KSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-------------PENVEMVLPGDNIKLNVTLLSS 1008 (1021)
Q Consensus 942 ~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~g~~~~v~~~~~~p 1008 (1021)
..+++|+|++.|++|+ .+|..||++++|||+.+++|++.- ...+++++.||.+.|+|++.+|
T Consensus 331 ~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p 405 (439)
T 3j2k_7 331 HSGRTFDVQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGT 405 (439)
T ss_pred ceeeEEEEEEEEeCCC-----CcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCe
Confidence 7889999999999987 479999999999999999876531 2357789999999999999999
Q ss_pred eecccC------CeEEEeC
Q psy5021 1009 IAIEIG------LRFAIRE 1021 (1021)
Q Consensus 1009 i~~~~~------~rf~lr~ 1021 (1021)
+|++.| +||+|||
T Consensus 406 ~~~e~~~~~~~~g~f~l~d 424 (439)
T 3j2k_7 406 ICLETFKDFPQMGRFTLRD 424 (439)
T ss_pred EEEeeccccccCCCEEEEE
Confidence 999998 7999996
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-54 Score=496.87 Aligned_cols=376 Identities=66% Similarity=1.036 Sum_probs=324.9
Q ss_pred Ccccccceeeeeeeeeccchhhhhhhccccccccc-cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 646 STDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 646 ~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
......+.++++|++|+|||||+++|++.....+. ..+..++.+|..++|+++|+|++.....++..+..++|||||||
T Consensus 6 ~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred cCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 33445678999999999999999999974222211 12222335799999999999999999899988899999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
++|.+++..+++.+|++|+|+|++++.+.|+++|+.++..+++|++|+++||+|+.++++.++.+.+++.++++.+++..
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 165 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999888999999998645556667778888888888765
Q ss_pred CceEEEEecccccccCCC--C----CccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEE
Q psy5021 805 ENTKIVIGSALLALEGKD--D----NQLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERG 877 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~--~----~~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G 877 (1021)
.+++++++||++|.+... . ....|+ ++.+|+++|.+.+|.|.+..+.|++++|+++|+++|.|+|++|+|.+|
T Consensus 166 ~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G 245 (405)
T 2c78_A 166 DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERG 245 (405)
T ss_dssp TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBS
T ss_pred cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecc
Confidence 668999999999854100 0 012232 378999999998888888889999999999999999999999999999
Q ss_pred EeeCCCEEEEeecCC-eeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeec
Q psy5021 878 IVKNGEEIEIVGYKQ-TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSK 956 (1021)
Q Consensus 878 ~l~~gd~v~i~p~~~-~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~ 956 (1021)
+|++||+|.+.|.+. ..+++|++|++++.++++|.|||+|++.|++++..++++||+||+++++.++++|+|++.|+++
T Consensus 246 ~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~~~~~~~~f~a~v~~l~~ 325 (405)
T 2c78_A 246 KVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKK 325 (405)
T ss_dssp EEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEESTTSSEEEEEEEEEEEECCG
T ss_pred cccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCCCCceeEEEEEEEEEecc
Confidence 999999999998763 2578999999999999999999999999999999999999999998888899999999999998
Q ss_pred cCCCCCccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 957 EEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 957 ~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+.++..+||..||++++|+++++++|++.+.+.++.+.+||.+.|+|++.+|+|+++|+||+||+
T Consensus 326 ~~~~~~~~~~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~~~~~~v~~~~~~p~~~~~~~rf~lr~ 390 (405)
T 2c78_A 326 EEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIRE 390 (405)
T ss_dssp GGTSCSSCBCTTCCCEEEETTEEEEEEEECCTTCCCBCTTCEEEEEEEEEEEEEECTTCEEEEEE
T ss_pred cCCCccccccCCceEEEEEcccEEEEEEEEccCccccCCCCEEEEEEEECceEEEccCCEEEEEc
Confidence 64444579999999999999999999888766678999999999999999999999999999995
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-52 Score=510.39 Aligned_cols=369 Identities=73% Similarity=1.129 Sum_probs=311.8
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
...+.++++|++|+|||||+++|++.....+...+..++.+|++++|+++|+|++.....++..+..++|||||||++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 34578899999999999999999975322221222223357889999999999999999999888999999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
++|..+++.+|++|||||+++|.+.|+++|+.++..+++|++||++||+|+.+++++++.+.+++.++++.+++..+.++
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp 453 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTP 453 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccccee
Confidence 99999999999999999999999999999999999999998899999999986555667777888999998888666789
Q ss_pred EEEecccccccCCCCCccCc-chHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEE
Q psy5021 809 IVIGSALLALEGKDDNQLGT-TSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEI 887 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~-~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i 887 (1021)
++++||++|.++. ..| .++++|+++|.+.++.|.+..+.|++++|+++|+++|.|+|++|+|.+|+|++||+|.+
T Consensus 454 ~IpvSAktG~ng~----~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I 529 (1289)
T 3avx_A 454 IVRGSALKALEGD----AEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 529 (1289)
T ss_dssp EEECCSTTTTTCC----HHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEE
T ss_pred EEEEEeccCCCCC----ccccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEE
Confidence 9999999885431 123 47899999999988888888889999999999999999999999999999999999999
Q ss_pred eecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccC
Q psy5021 888 VGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFN 967 (1021)
Q Consensus 888 ~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~ 967 (1021)
.|.+...+++|++|++++.++++|.|||+|++.|++++..++++||||++++++.+++.|+|++.+++++.++..+||..
T Consensus 530 ~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~~~~~~~F~A~V~~L~~~egg~~~pi~~ 609 (1289)
T 3avx_A 530 VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFK 609 (1289)
T ss_dssp ESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCEEEEEEEEEEECCGGGTSCSSCBCT
T ss_pred ecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEecCCCCccceeEEEEEEEEccccccccccccC
Confidence 98765467899999999999999999999999999999999999999999888889999999999999764444578999
Q ss_pred CCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 968 GYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 968 G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
||+|++|+++.+++|++.+.+.++.+++||.+.|+|++.+|+|+++|+||+||+
T Consensus 610 G~~p~l~igT~~vtg~I~L~~~~~~L~~Gd~a~V~L~l~~Pi~ve~g~RFiLRd 663 (1289)
T 3avx_A 610 GYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIRE 663 (1289)
T ss_dssp TCCCEEECSSCEEEEEEECCTTCCCBCTTCCCEEEEEEEEEEECCTTCEEEEEE
T ss_pred CCceEEEEeeeeEEEEEEECCCcccccCCCEEEEEEEECceEEEccCCEEEEEe
Confidence 999999999999999988777778999999999999999999999999999995
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-52 Score=490.69 Aligned_cols=364 Identities=30% Similarity=0.470 Sum_probs=315.1
Q ss_pred ccceeeeeeeeeccchhhhhhhcccccc---------------ccccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSE---------------IYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~---------------~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..+.++++|++|+|||||+++|++.... .+.+.+...+.+|+.++|+++|+|++.....++.+++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 3467899999999999999999865211 1222222234568889999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcH-------HHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP-------QTREHILLARQVGVPNIVVFLNKADCVQ-DKELL 786 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~-------qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~ 786 (1021)
.++|||||||++|.+++..+++.+|++||||||+++.+. |+++|+.++..+++|++|||+||+|+.+ +++++
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999999999999999999999999999988766 9999999999999988999999999985 35667
Q ss_pred HHHHHHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCcch------------HHHHHHhhhccCCCCCCCCCCCe
Q psy5021 787 DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTS------------IKKLLDVLDSSIPTPNRITDKPF 853 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~------------i~~Ll~~l~~~l~~~~~~~~~p~ 853 (1021)
+.+.+++.++++.+++..++++++++||++|.+..... ...|+. .+.|+++|.. ++.|.+..+.|+
T Consensus 166 ~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~~~~~~p~ 244 (458)
T 1f60_A 166 QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPTDKPL 244 (458)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCcccCCCCc
Confidence 77888899999888876556889999999986654322 123432 4579999876 566778889999
Q ss_pred eEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccce
Q psy5021 854 LMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQ 933 (1021)
Q Consensus 854 ~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~ 933 (1021)
+|+|+++|+++|.|+|++|+|++|.+++||+|.+.|.+ ..++|++|++++.++++|.|||+|++.|++++..++++|+
T Consensus 245 r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~ 322 (458)
T 1f60_A 245 RLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG--VTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGN 322 (458)
T ss_dssp EEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT--EEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSCTTC
T ss_pred EEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCC--ceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccCcee
Confidence 99999999999999999999999999999999999875 4689999999999999999999999999999999999999
Q ss_pred EEeeCC--CccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-------------CCcccccCCCe
Q psy5021 934 VLAKIG--SIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-------------ENVEMVLPGDN 998 (1021)
Q Consensus 934 vl~~~~--~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~g~~ 998 (1021)
||++++ ++..+++|+|++.|++++ .||..||++++|+++.+++|++... +++++|++||.
T Consensus 323 vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~ 397 (458)
T 1f60_A 323 VCGDAKNDPPKGCASFNATVIVLNHP-----GQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDA 397 (458)
T ss_dssp EEEETTSSCCCCCSEEEEEEEECSCS-----CCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCE
T ss_pred EEecCCCCCCceeeEEEEEEEEeCCC-----CCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCE
Confidence 999985 578999999999999976 5899999999999999999877421 24779999999
Q ss_pred EEEEEEEceeeecccCC------eEEEeC
Q psy5021 999 IKLNVTLLSSIAIEIGL------RFAIRE 1021 (1021)
Q Consensus 999 ~~v~~~~~~pi~~~~~~------rf~lr~ 1021 (1021)
+.|+|++.+|+|+++|+ ||+|||
T Consensus 398 ~~v~~~~~~p~~~~~~~~~~~~grf~lr~ 426 (458)
T 1f60_A 398 ALVKFVPSKPMCVEAFSEYPPLGRFAVRD 426 (458)
T ss_dssp EEEEEEESSCCCCCCTTTCGGGSEEEEEE
T ss_pred EEEEEEECCeEEEecCccCCCCCcEEEEE
Confidence 99999999999999997 999996
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-52 Score=500.86 Aligned_cols=363 Identities=25% Similarity=0.359 Sum_probs=281.5
Q ss_pred ccceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..+.++++|++|+|||||+|+|++....+. .+.+...+++|..++|+++|+|++.....++++++
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 346789999999999999999975433222 23334456789999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-------cHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-------MPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELL 786 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-------~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~ 786 (1021)
.++|||||||++|.++|..+++.+|++|||||+++|. ..|+++|+.++..+++|++|||+||||+++ +++++
T Consensus 256 ~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~ 335 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRF 335 (592)
T ss_dssp ---CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHH
Confidence 9999999999999999999999999999999999865 789999999999999988999999999986 45667
Q ss_pred HHHHHHHHHhh-hccccCCCceEEEEecccccccCCCCC---ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEe
Q psy5021 787 DLVEMEIRELL-TEYDFDGENTKIVIGSALLALEGKDDN---QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFS 862 (1021)
Q Consensus 787 ~~~~~~~~~~l-~~~~~~~~~~~ii~iSa~~~~~~~~~~---~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~ 862 (1021)
+.+.+++..++ +.+++...+++++++||++|.+..... ...|+..++|+++|.+.++ |.+..+.|++++|+++|+
T Consensus 336 ~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~~v~~ 414 (592)
T 3mca_A 336 QEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSIDDVYR 414 (592)
T ss_dssp HHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchheeeEEEe
Confidence 88888999998 888887777899999999986554322 3567778899999998665 667788999999999999
Q ss_pred eCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccc-eeccCceEEEEecccCccCcccceEEeeCCC-
Q psy5021 863 ISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLD-EGLAGENVGILLRSVKREEVERGQVLAKIGS- 940 (1021)
Q Consensus 863 v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~-~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~- 940 (1021)
+ |.|+|++|+|.+|+|++||.|.+.|.+. .++|++|++++.+++ +|.|||+|+|+|++++..++++|||||+++.
T Consensus 415 ~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~--~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~ 491 (592)
T 3mca_A 415 S-PRSVTVTGRVEAGNVQVNQVLYDVSSQE--DAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENP 491 (592)
T ss_dssp E-TTEEEEEEEEEESEEETTCEEEETTTTE--EEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSSSC
T ss_pred c-CCeEEEEEEEeeeeEccCCEEEEccCCc--eEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccCCCC
Confidence 9 9999999999999999999999998664 589999999999999 9999999999999999999999999999875
Q ss_pred ccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC----CCcccccCCCeEEEEEE-Eceeeeccc--
Q psy5021 941 IKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP----ENVEMVLPGDNIKLNVT-LLSSIAIEI-- 1013 (1021)
Q Consensus 941 ~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~----~~~~~l~~g~~~~v~~~-~~~pi~~~~-- 1013 (1021)
+..++.|+|+++|++++ .||..||++++|||+.+++|++.+. +.+++|++||.+.|+|+ +.+|+|++.
T Consensus 492 ~~~~~~f~a~v~~~~~~-----~pi~~g~~~~l~~~t~~~~~~i~l~~~~~~~~~~l~~gd~~~v~l~fl~~p~~~e~~~ 566 (592)
T 3mca_A 492 VRRVRSFVAEIQTFDIH-----GPILSGSTLVLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAE 566 (592)
T ss_dssp CEEESEEEEEEEECSCS-----SCEETTEEEEEECSSCEEEEEEEEEESSSSCCSEECSSCEEEEEEEESSSCEEECCTT
T ss_pred ccccCeEEEEEEEECCC-----ccCCCCCEEEEEEcCcEEEEEEEEEeccccchhccCCCCEEEEEEEECCCcEEEEecc
Confidence 67899999999999986 5999999999999999999888553 36889999999999999 999999954
Q ss_pred ----CCeEEEeC
Q psy5021 1014 ----GLRFAIRE 1021 (1021)
Q Consensus 1014 ----~~rf~lr~ 1021 (1021)
++||+||+
T Consensus 567 ~~~~~~rfilr~ 578 (592)
T 3mca_A 567 ECPALGRFILRR 578 (592)
T ss_dssp TCHHHHEEEEES
T ss_pred CCCCCCeEEEEE
Confidence 48999995
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=478.19 Aligned_cols=364 Identities=30% Similarity=0.482 Sum_probs=304.0
Q ss_pred ccceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..+..+++|++++|||||+++|++....+. .+.+...+.+|..++|+++|+|++.....+++.+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 346789999999999999999987532221 11222224578899999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeeccccc---hhh
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQTREHILLARQVGVPNIVVFLNKADCVQ---DKE 784 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~ 784 (1021)
.++|||||||++|.+++..+++.+|++|+|+|+++| ...|+++|+.++..+++|++||++||+|+.+ +++
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 164 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK 164 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHH
Confidence 999999999999999999999999999999999998 6679999999999999987999999999986 245
Q ss_pred HHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEee
Q psy5021 785 LLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSI 863 (1021)
Q Consensus 785 ~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v 863 (1021)
+++.+.+++.++++.+++....++++++||++|.+..... ...|+..+.|+++|.. ++.|.+..++|++++|+++|++
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~~~~~~~~~v~~v~~~ 243 (435)
T 1jny_A 165 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKPVDKPLRIPIQDVYSI 243 (435)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCGGGSCCBEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCCCCCCeEEEEEEEEEe
Confidence 6777888999999988886666899999999886543221 2345544689999876 5557676789999999999999
Q ss_pred CCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC-Ccc
Q psy5021 864 SGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG-SIK 942 (1021)
Q Consensus 864 ~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~-~~~ 942 (1021)
+|.|+|++|+|.+|+|++||.|.+.|.+ ..++|++|++++.++++|.|||+|+++|++++..++++||+|++++ ++.
T Consensus 244 ~~~G~v~~g~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~~~ 321 (435)
T 1jny_A 244 SGVGTVPVGRVESGVLKVGDKIVFMPAG--KVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPT 321 (435)
T ss_dssp TTTEEEEEEECCBSCEETTCEEEEETTT--EEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTSCCC
T ss_pred CCCcEEEEEEEecCeEEcCCEEEECCce--eEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCCce
Confidence 9999999999999999999999999865 4689999999999999999999999999999999999999999987 578
Q ss_pred ceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-------------CCcccccCCCeEEEEEEEceee
Q psy5021 943 SYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-------------ENVEMVLPGDNIKLNVTLLSSI 1009 (1021)
Q Consensus 943 ~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~g~~~~v~~~~~~pi 1009 (1021)
.+.+|+|++.|++++ .||..||++++|+++.+++|++... +.++.|++||.+.|+|++.+|+
T Consensus 322 ~~~~f~a~v~~l~~~-----~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~ 396 (435)
T 1jny_A 322 VADEFTARIIVVWHP-----TALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPL 396 (435)
T ss_dssp EESEEEEEEEECCCS-----SCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCE
T ss_pred EeEEEEEEEEEECCC-----CcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceE
Confidence 899999999999975 5899999999999999999877431 3467899999999999999999
Q ss_pred ecccCC------eEEEeC
Q psy5021 1010 AIEIGL------RFAIRE 1021 (1021)
Q Consensus 1010 ~~~~~~------rf~lr~ 1021 (1021)
|+++|. ||+|||
T Consensus 397 ~~~~~~~~~~~grf~lr~ 414 (435)
T 1jny_A 397 CVEKYNEFPPLGRFAMRD 414 (435)
T ss_dssp ECCCTTTSGGGTEEEEEE
T ss_pred EEecCCcCCcCccEEEEE
Confidence 999997 999996
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-51 Score=479.34 Aligned_cols=365 Identities=23% Similarity=0.342 Sum_probs=297.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccc---------------cccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEI---------------YGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~---------------~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..+.++++|++|+|||||+|+|++....+ +.+.+...+.+|....|+++|+|++.....++..+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 34678999999999999999998653222 223334456789999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELL 786 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~ 786 (1021)
.++|||||||++|.+++..+++.+|++|+|||+++| ...|+++|+.++..++++++|||+||+|+.+ .+.++
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~ 191 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF 191 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHH
Confidence 999999999999999999999999999999999998 4589999999999999888999999999986 35667
Q ss_pred HHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCc----cCcchHHHHHHhhhcc---CCC--CCCCCCCCeeEEE
Q psy5021 787 DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQ----LGTTSIKKLLDVLDSS---IPT--PNRITDKPFLMPI 857 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~----~~~~~i~~Ll~~l~~~---l~~--~~~~~~~p~~~~I 857 (1021)
+++.+++..+++.+++....++++++||++|.+...... ..|+..++|++.|... ++. |.+..+.|++|+|
T Consensus 192 ~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~~v 271 (483)
T 3p26_A 192 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSV 271 (483)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEEEE
Confidence 888889999998888876678999999999865543321 3455555565555543 333 5567889999999
Q ss_pred EEEEeeC---CceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc--------cccceeccCceEEEEecccCc
Q psy5021 858 EDVFSIS---GRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK--------KTLDEGLAGENVGILLRSVKR 926 (1021)
Q Consensus 858 ~~~~~v~---g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~--------~~~~~a~~G~~v~l~l~~~~~ 926 (1021)
+++|+++ |.|+|++|+|++|+|++||.|.+.|.+. +++|++|++++ .++++|.|||+|+|+|++++.
T Consensus 272 ~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~ 349 (483)
T 3p26_A 272 LEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQ--SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP 349 (483)
T ss_dssp EEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTE--EEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCG
T ss_pred EEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCC--eEEEEEEEEcCccccccccccccEECCCCEEEEEEEeccc
Confidence 9999998 5899999999999999999999998764 58999999995 899999999999999999999
Q ss_pred cCcccceEEeeCCC--ccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc------------CCCccc
Q psy5021 927 EEVERGQVLAKIGS--IKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL------------PENVEM 992 (1021)
Q Consensus 927 ~~i~~G~vl~~~~~--~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~------------~~~~~~ 992 (1021)
.++++|||||+++. +..++.|+|++.|++++ .||..||++++|+++.+++|++.- .+++++
T Consensus 350 ~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~~~~~~~ 424 (483)
T 3p26_A 350 EDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRH 424 (483)
T ss_dssp GGCCTTCEEECTTCCCCEECSEEEEEEEECSCS-----SCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEECCSCCSC
T ss_pred ccCCceEEEEcCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCcccccCccC
Confidence 99999999998765 78999999999999876 589999999999999999987642 145779
Q ss_pred ccCCCeEEEEEEE---ceeeecccC------CeEEEeC
Q psy5021 993 VLPGDNIKLNVTL---LSSIAIEIG------LRFAIRE 1021 (1021)
Q Consensus 993 l~~g~~~~v~~~~---~~pi~~~~~------~rf~lr~ 1021 (1021)
|++||.|.|+|++ .+|+|++.+ +||+||+
T Consensus 425 l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~ 462 (483)
T 3p26_A 425 LGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRK 462 (483)
T ss_dssp BCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEE
T ss_pred cCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEe
Confidence 9999999999999 789999986 7999985
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-51 Score=481.42 Aligned_cols=360 Identities=26% Similarity=0.374 Sum_probs=279.9
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeCCeE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH 715 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~ 715 (1021)
.+.++++|++|||||||+++|+....... ...+...+.+|..+.|+++|+|++.....++++++.
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 46789999999999999999986432221 111122345799999999999999999999999999
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc---hhhH
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQ---DKEL 785 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~~ 785 (1021)
++|||||||++|.++|..+++.+|++||||||++|.+ .|+++|+.++..+++|++|||+||||+.+ ++++
T Consensus 123 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~ 202 (467)
T 1r5b_A 123 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEER 202 (467)
T ss_dssp EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHH
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHH
Confidence 9999999999999999999999999999999999864 69999999999999998999999999954 3466
Q ss_pred HHHHHHHHHHhhhcc-ccC-CCceEEEEecccccccCCCCC---ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEE
Q psy5021 786 LDLVEMEIRELLTEY-DFD-GENTKIVIGSALLALEGKDDN---QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDV 860 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~-~~~-~~~~~ii~iSa~~~~~~~~~~---~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~ 860 (1021)
++.+.+++.++++.+ ++. ..+++++++||++|.+..... ...|+....|++.|.. ++.|.+..+.|++++|+++
T Consensus 203 ~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~v~~~ 281 (467)
T 1r5b_A 203 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDS-MTHLERKVNAPFIMPIASK 281 (467)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHH-CCCCHHHHTSCCEEECCEE
T ss_pred HHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHh-CCCCcCCCCCCcEEEEEEE
Confidence 788888898888887 764 235789999999986654322 3467777778888876 6767677789999999999
Q ss_pred EeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec-ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 861 FSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF-KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 861 ~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~-~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|+ +.|+|++|+|.+|+|++||.|.+.|.+ ..++|++|+++ +.++++|.|||+|+++|++ +..++++||||++++
T Consensus 282 ~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~~ 356 (467)
T 1r5b_A 282 YK--DLGTILEGKIEAGSIKKNSNVLVMPIN--QTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTK 356 (467)
T ss_dssp EE--SSSEEEEEECCBSEEETTEEEEEETTT--EEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECSS
T ss_pred Ee--CCCeEEEEEEeeeEEeeCCEEEEccCC--eeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCCC
Confidence 87 688999999999999999999999865 45899999998 8999999999999999999 899999999999987
Q ss_pred -CccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc-C-----------CCcccccCCCeEEEEEEEc
Q psy5021 940 -SIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-P-----------ENVEMVLPGDNIKLNVTLL 1006 (1021)
Q Consensus 940 -~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~-~-----------~~~~~l~~g~~~~v~~~~~ 1006 (1021)
++..+++|+|++.|++++ ++|..||++++|+|+.+++|+++. . +.+++|++||.+.|+|++.
T Consensus 357 ~~~~~~~~f~a~v~~l~~~-----~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~~g~~~~v~l~~~ 431 (467)
T 1r5b_A 357 NPVHATTRFIAQIAILELP-----SILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQ 431 (467)
T ss_dssp SCCCEEEEEEEEEEECSSC-----CCBSSCCCBEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCCTTCBCCEEEEEE
T ss_pred CCCccceEEEEEEEEeCCC-----CccCCCCEEEEEEeCCEEEEEEEEEEEEecCCccccccCccccCCCCEEEEEEEEC
Confidence 578999999999999986 589999999999999999987642 1 1367899999999999999
Q ss_pred eeeecccC------CeEEEeC
Q psy5021 1007 SSIAIEIG------LRFAIRE 1021 (1021)
Q Consensus 1007 ~pi~~~~~------~rf~lr~ 1021 (1021)
+|+|++.| +||+|||
T Consensus 432 ~p~~~~~~~~~~~~grf~lrd 452 (467)
T 1r5b_A 432 TPVCMERFEDYQYMGRFTLRD 452 (467)
T ss_dssp EEEECCCTTTCHHHHEEEEEC
T ss_pred cEEEEEEcCcCCCCccEEEEE
Confidence 99999999 3999996
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=484.36 Aligned_cols=365 Identities=23% Similarity=0.345 Sum_probs=315.0
Q ss_pred ccceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..+.++++|++|+|||||+|+|++....+. .+.+...+++|....|+++|+|++.....++..+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 457889999999999999999987543322 23334455678899999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELL 786 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~ 786 (1021)
.++|||||||++|.+++..+++.+|++|+||||++| ...|+++|+.++..++++++|||+||+|+.+ .+.++
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~ 325 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF 325 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHH
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHH
Confidence 999999999999999999999999999999999986 4579999999999999998999999999986 34567
Q ss_pred HHHHHHHHHhhhccccCCCceEEEEecccccccCCCCC----ccCcchHHHHHHhhhcc---CCC--CCCCCCCCeeEEE
Q psy5021 787 DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN----QLGTTSIKKLLDVLDSS---IPT--PNRITDKPFLMPI 857 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~----~~~~~~i~~Ll~~l~~~---l~~--~~~~~~~p~~~~I 857 (1021)
+.+.+++..+++.+++....++++++||++|.+..... ...|+..++|++.|... .+. |.+..+.|++|+|
T Consensus 326 ~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V 405 (611)
T 3izq_1 326 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSV 405 (611)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEEC
T ss_pred HHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhhhe
Confidence 78888899999888887667899999999986554332 15677767777777654 222 4466789999999
Q ss_pred EEEEeeC---CceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc--------cccceeccCceEEEEecccCc
Q psy5021 858 EDVFSIS---GRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK--------KTLDEGLAGENVGILLRSVKR 926 (1021)
Q Consensus 858 ~~~~~v~---g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~--------~~~~~a~~G~~v~l~l~~~~~ 926 (1021)
+++|+++ |.|+|++|+|.+|+|++||.|.+.|.+. +++|++|++++ .++++|.|||+|+|+|++++.
T Consensus 406 ~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~--~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~ 483 (611)
T 3izq_1 406 LEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQ--SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP 483 (611)
T ss_dssp CEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTE--EEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCT
T ss_pred eeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCc--eEEEEEEEEcccccccccccccceecCCCcceEEeeeccH
Confidence 9999998 6899999999999999999999998764 58999999994 899999999999999999999
Q ss_pred cCcccceEEeeCCC--ccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc------------CCCccc
Q psy5021 927 EEVERGQVLAKIGS--IKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL------------PENVEM 992 (1021)
Q Consensus 927 ~~i~~G~vl~~~~~--~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~------------~~~~~~ 992 (1021)
.++++|+|||+++. +..++.|+|++.|++|+ .||..||++++|||+.+++|++.- .+.+++
T Consensus 484 ~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~~~~ 558 (611)
T 3izq_1 484 EDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRH 558 (611)
T ss_dssp TSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCS-----SCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTCSCS
T ss_pred hhCcceEEccCCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccCccc
Confidence 99999999998765 78999999999999876 589999999999999999987642 135679
Q ss_pred ccCCCeEEEEEEE---ceeeecccC------CeEEEeC
Q psy5021 993 VLPGDNIKLNVTL---LSSIAIEIG------LRFAIRE 1021 (1021)
Q Consensus 993 l~~g~~~~v~~~~---~~pi~~~~~------~rf~lr~ 1021 (1021)
|++|+.|.|+|++ .+|+|++.+ +||+||+
T Consensus 559 l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~ 596 (611)
T 3izq_1 559 LGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRK 596 (611)
T ss_dssp SSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEES
T ss_pred cCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEe
Confidence 9999999999999 789999996 7999995
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-49 Score=456.18 Aligned_cols=360 Identities=23% Similarity=0.318 Sum_probs=301.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc-----------------cccccccccCCchhhhhcCceEeeeEEEEeeCC
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG-----------------GEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-----------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~ 713 (1021)
.+..+++|++|||||||+++|++....+.. ..+...+.+|..++|+++|+|++.....+..++
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 367899999999999999999875422211 111112346888999999999999999999999
Q ss_pred eEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccch-hhHHHHHHHH
Q psy5021 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQD-KELLDLVEME 792 (1021)
Q Consensus 714 ~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~-~~~~~~~~~~ 792 (1021)
..++|||||||++|.+++..+++.+|++|+|+|++++.+.|+++|+.++..++++++|+|+||+|+.++ +++++.+.++
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~ 183 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKAD 183 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999889999999999863 4556777788
Q ss_pred HHHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEE
Q psy5021 793 IRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVT 871 (1021)
Q Consensus 793 ~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~ 871 (1021)
+.++++.+++....++++++||++|.+..... ...|+..+.|++.|.. ++.|.+..+.|++++|+++++..+.|+.+.
T Consensus 184 ~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~~~~~~v~~v~~~~~~~~g~~ 262 (434)
T 1zun_B 184 YLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILET-VEIASDRNYTDLRFPVQYVNRPNLNFRGFA 262 (434)
T ss_dssp HHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHH-SCCTTCCCSSSCEEECCEEECSSSSCCEEE
T ss_pred HHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhc-CCCcccCCCCCcEEEEEEEeccCCCceEEE
Confidence 88888888754456899999999886544322 3456666667777765 566777778999999999999888888899
Q ss_pred EEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-ccceeeEEEE
Q psy5021 872 GKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIFECE 950 (1021)
Q Consensus 872 G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~a~ 950 (1021)
|+|.+|+|++||+|.+.|.+. .++|++|++++.++++|.|||+|++++++ ..++++||+|++++. |..+++|+|+
T Consensus 263 G~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~~G~~l~~~~~~~~~~~~f~a~ 338 (434)
T 1zun_B 263 GTLASGIVHKGDEIVVLPSGK--SSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDISRGDLLVHADNVPQVSDAFDAM 338 (434)
T ss_dssp EECCBSCEETTCEEEETTTCC--EEEEEEEEETTEEESEECTTCEEEEEESS--CCCCCTTCEEEETTSCCCEEEEEEEE
T ss_pred EEEecceEeCCCEEEEecCCe--EEEEEEEEEcCcceeEecCCCEEEEEeCC--ccccCCccEEECCCCCCCcccEEEEE
Confidence 999999999999999998664 58999999999999999999999999985 568999999999875 5889999999
Q ss_pred EEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-----------CCcccccCCCeEEEEEEEceeeecccCC----
Q psy5021 951 VYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-----------ENVEMVLPGDNIKLNVTLLSSIAIEIGL---- 1015 (1021)
Q Consensus 951 i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~g~~~~v~~~~~~pi~~~~~~---- 1015 (1021)
+.|++. .||..||++++|+++.+++|++... +.++.|.+||.+.|+|++.+|+|+++|+
T Consensus 339 ~~~l~~------~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~~~p~~~~~~~~~~~ 412 (434)
T 1zun_B 339 LVWMAE------EPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGYSSNRT 412 (434)
T ss_dssp EEECCS------SCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEECCCTTTCTT
T ss_pred EEEecc------ccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEECCeEEEcccccCCc
Confidence 999963 4899999999999999999877531 2478899999999999999999999996
Q ss_pred --eEEEeC
Q psy5021 1016 --RFAIRE 1021 (1021)
Q Consensus 1016 --rf~lr~ 1021 (1021)
||+|||
T Consensus 413 ~grf~l~d 420 (434)
T 1zun_B 413 TGAFIVID 420 (434)
T ss_dssp TTEEEEEC
T ss_pred cceEEEEE
Confidence 999985
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-48 Score=440.84 Aligned_cols=323 Identities=18% Similarity=0.265 Sum_probs=280.4
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.++++|++|+|||||+++|+ ++|+|++.....++++++.++|||||||++|.+++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHH
Confidence 88999999999999999998 358899999999999999999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEe-eccccchhhHHHHHHHHHHHhhhccccCCCceEEEE
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLN-KADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVI 811 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviN-K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~ 811 (1021)
.+++.+|++|+||| ++|.+.|+++|+.++..+++|.+|+++| |||+ + .+..+...+++.++++.+++ ..+++++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~-~~~~~~~~~~i~~~l~~~~~--~~~~ii~ 153 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-H-MHAIDELKAKLKVITSGTVL--QDWECIS 153 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C-HHHHHHHHHHHHHHTTTSTT--TTCEEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C-HHHHHHHHHHHHHHHHhcCC--CceEEEe
Confidence 99999999999999 9999999999999999999996588999 9999 5 44455566788888877654 3579999
Q ss_pred --ecccccccCCCCCccCcchHHHHHHhhhccCCCC---CCC-CCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEE
Q psy5021 812 --GSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP---NRI-TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885 (1021)
Q Consensus 812 --iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~---~~~-~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v 885 (1021)
+||+++. ...|+++|++.|.+.++.+ ..+ ...|++++|+++|+++|.|+|++|+|++|++++||+|
T Consensus 154 ~~~SA~~~~--------~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v 225 (370)
T 2elf_A 154 LNTNKSAKN--------PFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKT 225 (370)
T ss_dssp CCCCTTSSS--------TTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEE
T ss_pred cccccccCc--------CCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEE
Confidence 9999820 0148888998888766533 112 3556899999999999999999999999999999999
Q ss_pred EEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccc
Q psy5021 886 EIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPF 965 (1021)
Q Consensus 886 ~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i 965 (1021)
.+.|.+ ..++|++|+++++++++|.|||+|+++|++++.+++++||+|++ ++ ..+++|+|++.|++++ .||
T Consensus 226 ~~~p~~--~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-~~-~~~~~f~a~v~~l~~~-----~~i 296 (370)
T 2elf_A 226 KIFPLD--RDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-KE-IVTTDYTLECTVSKFT-----KKI 296 (370)
T ss_dssp EEETTT--EEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES-CC-EEEEEEEEEEEECTTS-----CCB
T ss_pred EECCCC--cEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC-CC-ceeEEEEEEEEEECCC-----CCC
Confidence 999865 45899999999999999999999999999999999999999999 66 8999999999999985 589
Q ss_pred cCCCEEEEEEeeceeeeeeccC--C--CcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 966 FNGYKPQFYFRTTDVTGICKLP--E--NVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 966 ~~G~~~~~~~~~~~~~~~~~~~--~--~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
..||++++|+++.+++|++... + ..+.+.+||.+.|+|++.+|+|+++|+||+||+
T Consensus 297 ~~g~~~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g~~~~v~l~~~~pi~~~~~~rfilr~ 356 (370)
T 2elf_A 297 EPASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLAN 356 (370)
T ss_dssp CTTCEEEEEETTEEEEEEEEEEEETTEEESCBCTTCEEEEEEEEEEEEEECTTSCEEEEC
T ss_pred CCCCEEEEEEcCCEEEEEEEEEEeCCCcceeecCCCEEEEEEEECcEEEEeCCCEEEEEE
Confidence 9999999999999999877643 2 123567999999999999999999999999996
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=466.84 Aligned_cols=347 Identities=30% Similarity=0.485 Sum_probs=292.3
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
+...++.+.++++|++|+|||||+++|++... ...+|+..+|+++|+|++.....+++++..++|||||||
T Consensus 13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~---------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh 83 (482)
T 1wb1_A 13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83 (482)
T ss_dssp CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSH
T ss_pred hhhcCCCCEEEEECCCCChHHHHHHHHHCCCc---------ccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence 34557788999999999999999999987431 124688899999999999999889999999999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc-ccC
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY-DFD 803 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~-~~~ 803 (1021)
++|.+++..+++.+|++|||+|+++|...|+++|+.++..+++| +|+|+||+|+.+ ++.++.+.+++.++++.. ++.
T Consensus 84 ~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip-~IvviNK~Dl~~-~~~~~~~~~~l~~~l~~~~~~~ 161 (482)
T 1wb1_A 84 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP-IIVVITKSDNAG-TEEIKRTEMIMKSILQSTHNLK 161 (482)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCC-BCEEEECTTSSC-HHHHHHHHHHHHHHHHHSSSGG
T ss_pred HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCC-EEEEEECCCccc-chhHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999 588999999986 445667777888888766 553
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC--CCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP--NRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKN 881 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~--~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~ 881 (1021)
..+++++||++| .|+++|+++|.+.++.| .+..+.|++++|+++|+++|.|+|++|+|.+|.+++
T Consensus 162 --~~~ii~vSA~~g-----------~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~ 228 (482)
T 1wb1_A 162 --NSSIIPISAKTG-----------FGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKV 228 (482)
T ss_dssp --GCCEEECCTTTC-----------TTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCS
T ss_pred --cceEEEEECcCC-----------CCHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEee
Confidence 468999999987 38999999998866555 667788999999999999999999999999999999
Q ss_pred CCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEE-eeCCCccceeeEEEEEEEeeccCCC
Q psy5021 882 GEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVL-AKIGSIKSYNIFECEVYILSKEEGG 960 (1021)
Q Consensus 882 gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl-~~~~~~~~~~~f~a~i~~~~~~~~~ 960 (1021)
||.+.+.|.+. .++|++|+++++++++|.|||+|++.+++++..++++||+| ++++++.+++.|+|++.|+++.+
T Consensus 229 gd~v~~~p~~~--~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~~~~~~~~~~a~v~~l~~~~-- 304 (482)
T 1wb1_A 229 GDELKVLPINM--STKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKIKISDIFK-- 304 (482)
T ss_dssp SEEECCTTTCC--CEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTCCCCCEEEEEECCCCCSSCC--
T ss_pred CCEEEECCCCc--EEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCCCCCceeeEEEEEEEEeccCC--
Confidence 99999998664 47999999999999999999999999999999999999999 77777889999999999998642
Q ss_pred CCccccCCCEEEEEEeeceeeeeeccCC-----------CcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 961 RHTPFFNGYKPQFYFRTTDVTGICKLPE-----------NVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 961 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
.||..||++++|+++.+++|++.... .++.|++||.+.|+|++.+|+|+++++||+||+
T Consensus 305 --~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~ 374 (482)
T 1wb1_A 305 --YNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITR 374 (482)
T ss_dssp --SCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEEC
T ss_pred --cccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEE
Confidence 58999999999999999998875433 146799999999999999999999999999996
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=432.35 Aligned_cols=336 Identities=31% Similarity=0.432 Sum_probs=271.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee---------------C--
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES---------------E-- 712 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~---------------~-- 712 (1021)
..+.++++|+++||||||+++|++.. .++..+|+++|+|++..+..+.. +
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~-------------~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~ 73 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVW-------------TDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNC 73 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCC-------------CCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTS
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc-------------cccCcccccCCcEEEeccccccccccccccccccccccccc
Confidence 45788999999999999999998632 46778899999999877554322 1
Q ss_pred ------CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEeeccccchhhH
Q psy5021 713 ------NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFLNKADCVQDKEL 785 (1021)
Q Consensus 713 ------~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~ 785 (1021)
.+.++|||||||++|.++|..++..+|++|||+|+++|. ..|+++|+.++..++++++|||+||+|+.+.+.
T Consensus 74 g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~- 152 (408)
T 1s0u_A 74 LAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ- 152 (408)
T ss_dssp CCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT-
T ss_pred CcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH-
Confidence 167999999999999999999999999999999999987 899999999999999877999999999986322
Q ss_pred HHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCC
Q psy5021 786 LDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG 865 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g 865 (1021)
.....+++.++++.+. ...++++++||++| .|+++|+++|.+.++.|.+..+.|++++|+++|++++
T Consensus 153 ~~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g-----------~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~ 219 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTI--AENAPIIPISAHHE-----------ANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINK 219 (408)
T ss_dssp TTTHHHHHHHHHTTST--TTTCCEEEC-----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHhhcC--CCCCeEEEeeCCCC-----------CCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecC
Confidence 1122345556665432 23578999999987 3899999999988888888889999999999999875
Q ss_pred --------ceeEEEEEEEEEEeeCCCEEEEeecCC----------eeEEEEEEEEecccccceeccCceEEEEec---cc
Q psy5021 866 --------RGTVVTGKIERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKKTLDEGLAGENVGILLR---SV 924 (1021)
Q Consensus 866 --------~G~Vv~G~V~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~---~~ 924 (1021)
.|+|++|+|.+|+|++||+|.+.|.+. ...++|++|++++.++++|.|||+|++.++ ++
T Consensus 220 ~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~ 299 (408)
T 1s0u_A 220 PGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYL 299 (408)
T ss_dssp SSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGGG
T ss_pred CCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCccc
Confidence 678999999999999999999998532 246899999999999999999999999997 67
Q ss_pred CccCcccceEEeeCCC-ccceeeEEEEEEEeeccCCCC----CccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeE
Q psy5021 925 KREEVERGQVLAKIGS-IKSYNIFECEVYILSKEEGGR----HTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNI 999 (1021)
Q Consensus 925 ~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~~~~----~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 999 (1021)
+..++++|+||++++. +...+.|+|++.|+++..+.. ..+|+.||++++|+++.+++|++..... +
T Consensus 300 ~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~-------~-- 370 (408)
T 1s0u_A 300 TKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSARG-------D-- 370 (408)
T ss_dssp TGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEET-------T--
T ss_pred chhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEecC-------C--
Confidence 8889999999999875 567889999999999852221 2689999999999999999987754321 3
Q ss_pred EEEEEEceeeecccCCeEEEeC
Q psy5021 1000 KLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 1000 ~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
.+++++.+|+|++.|+||+||+
T Consensus 371 ~~~~~~~~p~~~~~~~~~~~~~ 392 (408)
T 1s0u_A 371 IADIKLKLPICAEIGDRVAISR 392 (408)
T ss_dssp EEEEEEEEEEECCTTCEEEEEE
T ss_pred EEEEEECCcEEecCCCEEEEEE
Confidence 7888999999999999999995
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-46 Score=428.01 Aligned_cols=335 Identities=32% Similarity=0.438 Sum_probs=280.4
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC------------------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE------------------ 712 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~------------------ 712 (1021)
.+.++++|+++||||||+++|++.. .++.++|+++|+|++..+..+...
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~-------------~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g 76 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVW-------------TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCG 76 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC-------------CC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCc-------------cccChhhhcCCcEEEEeeeeeecccccccccccccccccccC
Confidence 4678999999999999999998632 477788999999998776544331
Q ss_pred -----CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHH
Q psy5021 713 -----NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFLNKADCVQDKELL 786 (1021)
Q Consensus 713 -----~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~ 786 (1021)
...++|||||||++|.++|..++..+|++||||||++|. ..|+++|+.++..++++++|+|+||+|+.+.+ ..
T Consensus 77 ~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~-~~ 155 (410)
T 1kk1_A 77 HETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE-KA 155 (410)
T ss_dssp CBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH-HH
T ss_pred cccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH-HH
Confidence 167999999999999999999999999999999999997 89999999999999987799999999998733 22
Q ss_pred HHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCC-
Q psy5021 787 DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG- 865 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g- 865 (1021)
....+++.++++... ...++++++||++| .|+++|+++|.+.++.|.+..+.|++++|+++|++++
T Consensus 156 ~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g-----------~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~ 222 (410)
T 1kk1_A 156 LENYRQIKEFIEGTV--AENAPIIPISALHG-----------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKP 222 (410)
T ss_dssp HHHHHHHHHHHTTST--TTTCCEEECBTTTT-----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCC
T ss_pred HHHHHHHHHHHHhcC--cCCCeEEEeeCCCC-----------CCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCC
Confidence 333456666666432 23578999999987 3899999999988888888888999999999998865
Q ss_pred -------ceeEEEEEEEEEEeeCCCEEEEeecCC----------eeEEEEEEEEecccccceeccCceEEEEec---ccC
Q psy5021 866 -------RGTVVTGKIERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKKTLDEGLAGENVGILLR---SVK 925 (1021)
Q Consensus 866 -------~G~Vv~G~V~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~---~~~ 925 (1021)
.|+|++|+|.+|+|++||+|.+.|.+. ...++|++|+.++.++++|.|||+|++.++ +++
T Consensus 223 g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~ 302 (410)
T 1kk1_A 223 GTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLT 302 (410)
T ss_dssp C----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGGGT
T ss_pred CccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCcccc
Confidence 678999999999999999999998542 136899999999999999999999999987 566
Q ss_pred ccCcccceEEeeCCC-ccceeeEEEEEEEeeccCCCC----CccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEE
Q psy5021 926 REEVERGQVLAKIGS-IKSYNIFECEVYILSKEEGGR----HTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIK 1000 (1021)
Q Consensus 926 ~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~~~~----~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~ 1000 (1021)
..++.+|+||++++. +..+++|+|++.|+++..+.. ..+|..||++++|+++.+++|++..... + .
T Consensus 303 ~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~-------~--~ 373 (410)
T 1kk1_A 303 KGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGK-------D--E 373 (410)
T ss_dssp GGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEET-------T--E
T ss_pred hhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEecC-------C--E
Confidence 789999999999875 567889999999999852211 2589999999999999999987754321 3 7
Q ss_pred EEEEEceeeecccCCeEEEeC
Q psy5021 1001 LNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 1001 v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
|+|++.+|+|++.|+||+||+
T Consensus 374 ~~l~~~~p~~~~~~~~~~~~~ 394 (410)
T 1kk1_A 374 IEVKLQIPVCAEPGDRVAISR 394 (410)
T ss_dssp EEEEEEEEEECCTTCEEEEEE
T ss_pred EEEEeCCcEEecCCCEEEEEE
Confidence 888999999999999999995
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=417.21 Aligned_cols=347 Identities=26% Similarity=0.315 Sum_probs=276.4
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe-----eCCeEEEEEecCC
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE-----SENKHYAHVDCPG 723 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~-----~~~~~i~liDtpG 723 (1021)
...+.++++|+++||||||+++|++.......+....... .....+..++.+.+.....+. ...+.++||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIG-VCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEE-ECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccccee-eccccccccceecccccccccccccccccceEEEEECCC
Confidence 4567899999999999999999997432221111100000 001112223333322211111 1237899999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
|++|.++|..+++.+|++|+|+|++++. +.|+++|+.++..++++++|+|+||+|+.+.+ ......+++.++++.++.
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~-~~~~~~~~i~~~l~~~~~ 163 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE-EALSQYRQIKQFTKGTWA 163 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH-HHHHHHHHHHHHHTTSTT
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH-HHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999997 89999999999999986699999999998743 233445566677665543
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCC--------ceeEEEEEE
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG--------RGTVVTGKI 874 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g--------~G~Vv~G~V 874 (1021)
..++++++||++| .|+++|+++|.+.++.|.+..+.|++++|+++|.+.| .|+|++|+|
T Consensus 164 --~~~~ii~vSA~~g-----------~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v 230 (403)
T 3sjy_A 164 --ENVPIIPVSALHK-----------INIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSI 230 (403)
T ss_dssp --TTCCEEECBTTTT-----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEE
T ss_pred --CCCEEEEEECCCC-----------cChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEE
Confidence 3578999999988 3899999999988888888889999999999999887 799999999
Q ss_pred EEEEeeCCCEEEEeecCC----------eeEEEEEEEEecccccceeccCceEEEEec---ccCccCcccceEEeeCCC-
Q psy5021 875 ERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKKTLDEGLAGENVGILLR---SVKREEVERGQVLAKIGS- 940 (1021)
Q Consensus 875 ~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~---~~~~~~i~~G~vl~~~~~- 940 (1021)
.+|++++||+|.+.|.+. ..+++|++|+++++++++|.|||+|++.|+ +++..++++|+|||+++.
T Consensus 231 ~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~~~~ 310 (403)
T 3sjy_A 231 IQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADAE 310 (403)
T ss_dssp EESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEETTCC
T ss_pred EeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccccEEeCCCCC
Confidence 999999999999998653 125899999999999999999999999987 677889999999999886
Q ss_pred ccceeeEEEEEEEeeccCCCC----CccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCC-
Q psy5021 941 IKSYNIFECEVYILSKEEGGR----HTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGL- 1015 (1021)
Q Consensus 941 ~~~~~~f~a~i~~~~~~~~~~----~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~- 1015 (1021)
|+.++.|+|++.|+++..++. ..||..||++++|+++.+++|++...+. + .++|+|++|+|++.|+
T Consensus 311 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~-------~--~~~~~l~~p~~~~~g~~ 381 (403)
T 3sjy_A 311 VPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKK-------D--EIEVELRRPVAVWSNNI 381 (403)
T ss_dssp CCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEECS-------S--EEEEEEEEEEECCSSSC
T ss_pred CcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEecC-------c--eEEEEeCCcEeeccCCE
Confidence 566899999999999742211 3699999999999999999988765432 2 6899999999999999
Q ss_pred eEEE
Q psy5021 1016 RFAI 1019 (1021)
Q Consensus 1016 rf~l 1019 (1021)
||+|
T Consensus 382 r~~i 385 (403)
T 3sjy_A 382 RTVI 385 (403)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
|
| >3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=312.01 Aligned_cols=184 Identities=22% Similarity=0.379 Sum_probs=148.1
Q ss_pred EEecCCccccCCeeccCCccccccCCcCCCCeEEEEEEeCCC----CC-----HHHHHHHHHHHHHcCCeEEEEEeCCCC
Q psy5021 365 VIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFK----ND-----QEKLLNILQKFCKEDPSLLLSINNNTG 435 (1021)
Q Consensus 365 ~i~gl~~~~~gdtl~~~~~~~~~~~~~~~~Pv~~~~iep~~~----~d-----~~kl~~~L~~L~~eDpsl~~~~~~etg 435 (1021)
+++||+++.+|||||+...+..++++++++|+++++|+|.+. +| ..+|.++|.+|+++||+|+++.+++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 567899999999999988888899999999999999999987 65 789999999999999999999999999
Q ss_pred cEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceE
Q psy5021 436 ETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIF 515 (1021)
Q Consensus 436 e~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f 515 (1021)
|++++|||||||||+++||+++ |+++.+++|+|+|||| .
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt--~-------------------------------------- 120 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE--D-------------------------------------- 120 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE--T--------------------------------------
T ss_pred eEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE--C--------------------------------------
Confidence 9999999999999999999999 9999999999999996 0
Q ss_pred EeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeee
Q psy5021 516 KSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPI 595 (1021)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~ 595 (1021)
| +|||||
T Consensus 121 ---------------------------G----------------------------------------------~llEPi 127 (332)
T 3e3x_A 121 ---------------------------G----------------------------------------------QLMEPF 127 (332)
T ss_dssp ---------------------------T----------------------------------------------EEEEEE
T ss_pred ---------------------------C----------------------------------------------EEECcE
Confidence 0 578999
Q ss_pred EEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC-CeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 596 MKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE-NFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 596 ~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
|.++|.||++|+|.||++|++|||++.+++..+ +++.|+|.+|+++++||.++|++.|+|.+.+...
T Consensus 128 ~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~ 195 (332)
T 3e3x_A 128 ETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHT 195 (332)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEEECHHHHHHHHHHHHhhcccccCceECCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEE
Confidence 999999999999999999999999999999885 6889999999999999999999999999887653
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=341.02 Aligned_cols=335 Identities=19% Similarity=0.210 Sum_probs=234.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec--------------
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-------------- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-------------- 72 (1021)
+.++|+|+||+|||||||+++|+........ .+|+|.......+.|..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e------------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v 65 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE------------------AGGITQHIGATEIPMDVIEGICGDFLKKFSI 65 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc------------------CCceecccCeEEEeechhhhhcccccccccc
Confidence 4578999999999999999999854321111 13455444333333321
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHH
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIID 152 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~ 152 (1021)
+.....++|||||||.+|..++.++++.+|++|+|+|+++|+++||.+.|+.+...++|+++|+||+|+.......
T Consensus 66 ~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~---- 141 (594)
T 1g7s_A 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVH---- 141 (594)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCC----
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccc----
Confidence 0012369999999999999999999999999999999999999999999999999999999999999996321000
Q ss_pred HHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCC
Q psy5021 153 IKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN 232 (1021)
Q Consensus 153 i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~ 232 (1021)
.+ .++++.........+..+.+.+.+.++.+++.+++.+
T Consensus 142 ----~~-------------------------------------~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e 180 (594)
T 1g7s_A 142 ----EG-------------------------------------RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESE 180 (594)
T ss_dssp ----TT-------------------------------------CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ----cC-------------------------------------CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchH
Confidence 00 0000000011122334445555555556666555420
Q ss_pred CCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccccc-CCCceEEEEEEEeecCCC
Q psy5021 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL-NSNKFVSLVFKIFHDPFL 311 (1021)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~-~~~p~~~~V~k~~~~~~~ 311 (1021)
. ...++ ..+..+|++++||++|.|+++|+++|..++|+|.... ... +++|+.++||+++.+++.
T Consensus 181 ~-----~~~l~---~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~-------l~~~~~~p~~~~V~~~~~d~g~ 245 (594)
T 1g7s_A 181 R-----FDRVT---DFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQ-------LKIEEDSPARGTILEVKEETGL 245 (594)
T ss_dssp E-----GGGCS---CTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGG-------GEECTTSBCEEEEEEEEEETTE
T ss_pred H-----HHHHH---hccCcceEEEEeccCCCCchhHHHHHHhhccccchhh-------hccccCCCceeEEEEEEEeCCc
Confidence 0 00000 0145789999999999999999999999888654311 111 578999999999999999
Q ss_pred ceEEEEEEEeeEEecCCEEEeCCCceee--EeceEEEee--------cCCeecccccc--CCCEEEEecCCccccCCeec
Q psy5021 312 GSLSFIRIYSGFIKVGDLVYNSTKKVKE--KIFRILRMF--------ANSKKDINDAH--FGDIVVIVGLKESSTGDTLC 379 (1021)
Q Consensus 312 g~~~~~RV~sG~l~~gd~v~~~~~~~~~--~i~~i~~~~--------g~~~~~v~~a~--aGdIv~i~gl~~~~~gdtl~ 379 (1021)
|.++++||++|+|++||.|++.+.+..+ +|..|+.+. +.+..++++|. +|+++++.||+++.+||||+
T Consensus 246 G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~Gd~l~ 325 (594)
T 1g7s_A 246 GMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLR 325 (594)
T ss_dssp EEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTBCTTCEEE
T ss_pred EEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCCCCCCEEE
Confidence 9999999999999999999988776644 999998873 66788999988 99999999999999999998
Q ss_pred cCCccc--------cccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHH
Q psy5021 380 SLSENI--------QLENIETPIPVISISIEPIFKNDQEKLLNILQKF 419 (1021)
Q Consensus 380 ~~~~~~--------~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L 419 (1021)
...... .+..+.+..+.+.+.|.+......+.|.++|+++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 326 VVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp ECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 865331 0122222334445555555555555555555544
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=321.54 Aligned_cols=271 Identities=27% Similarity=0.377 Sum_probs=216.8
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccc--ccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGE--VHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~--~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
....+||+++||+|||||||+++|+.... ..|. .....+.+|..+.|+++|+|+......+.+. ++.++||
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~----~~~~~ii 80 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAA---AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA----KRHYSHV 80 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHH---HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS----SCEEEEE
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhh---hcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC----CeEEEEE
Confidence 45678999999999999999999986311 1110 0112346899999999999999887777776 7899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC--HHHHHHHHHHHhCC
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN--YNNCIIDIKKKFNC 159 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~--~~~~~~~i~~~l~~ 159 (1021)
|||||.+|...+.++++.+|++|+|+|+++|...|++++|..+...++| +++|+||+|+.... ++...+++++.+
T Consensus 81 DtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l-- 158 (405)
T 2c78_A 81 DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL-- 158 (405)
T ss_dssp ECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH--
T ss_pred ECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999999999999999 78999999996411 011111111111
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIK 239 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~ 239 (1021)
T Consensus 159 -------------------------------------------------------------------------------- 158 (405)
T 2c78_A 159 -------------------------------------------------------------------------------- 158 (405)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCceeEEEeccccCccc------------------HHHHHHHHHHhCCCCccccccCCccccccCCCceEEE
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNKG------------------IEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSL 301 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~G------------------i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~ 301 (1021)
...-.....+|++++||++|.| +++|+++|.+++|.|... .++|+.++
T Consensus 159 ---~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~-----------~~~p~~~~ 224 (405)
T 2c78_A 159 ---NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRD-----------VDKPFLMP 224 (405)
T ss_dssp ---HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCC-----------CSSCCEEE
T ss_pred ---HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCC-----------CCCCcEEE
Confidence 0000011236899999999987 899999999999988653 57899999
Q ss_pred EEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc---eeeEeceEEEeecCCeeccccccCCCEEEEe--cC--Ccccc
Q psy5021 302 VFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK---VKEKIFRILRMFANSKKDINDAHFGDIVVIV--GL--KESST 374 (1021)
Q Consensus 302 V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~ 374 (1021)
|++++.++++|+++++||++|+|+.||.|.+.+.+ ...+|.+|... ..++++|.|||++++. |+ +++..
T Consensus 225 v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~ 300 (405)
T 2c78_A 225 VEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVER 300 (405)
T ss_dssp CCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCT
T ss_pred EEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCc
Confidence 99999999999999999999999999999987766 57889888543 3679999999999985 55 57999
Q ss_pred CCeeccCC
Q psy5021 375 GDTLCSLS 382 (1021)
Q Consensus 375 gdtl~~~~ 382 (1021)
||+|+.+.
T Consensus 301 G~~l~~~~ 308 (405)
T 2c78_A 301 GQVLAKPG 308 (405)
T ss_dssp TCEEESTT
T ss_pred eEEEEcCC
Confidence 99999865
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-33 Score=322.71 Aligned_cols=278 Identities=23% Similarity=0.273 Sum_probs=218.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc------------cc-cCCcccccChHHHhhhCceeeeeeeEEEee
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIG------------EV-HHGTTITDWMQQEQERGITITSASVSIFWE 71 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g------------~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~ 71 (1021)
....+||+++||+|+|||||+++|++.++.+.... .- -+-.+.+|..+.|+++|+|++.....+.+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45678999999999999999999999888775422 00 012457899999999999999999888888
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCc-------hhHHHHHHHHhhcCCC-EEEEEeCcCCCC
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQ-------PQTETVWFQSQKYKVP-KMIFVNKMDRIG 143 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~-------~~t~~~~~~~~~~~~p-~iiviNK~D~~~ 143 (1021)
++.++|||||||.+|...+..+++.+|++|+|||+++|+. .|+++++..+...++| +++++||||+..
T Consensus 94 ----~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 ----KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred ----CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 8899999999999999999999999999999999999976 7999999999999999 889999999975
Q ss_pred CCHH-HHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCH
Q psy5021 144 ANYN-NCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDE 222 (1021)
Q Consensus 144 ~~~~-~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~ 222 (1021)
.++. +..+++.+.+
T Consensus 170 ~~~~~~~~~~i~~~~----------------------------------------------------------------- 184 (439)
T 3j2k_7 170 VNWSNERYEECKEKL----------------------------------------------------------------- 184 (439)
T ss_pred cchHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 4431 1111111111
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH------------HHHHHHHhCCCCccccccCCccc
Q psy5021 223 FFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF------------LLNSICEYLPSPYDVDFKNNDYN 290 (1021)
Q Consensus 223 ~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~ 290 (1021)
..|++. + .+.....+|++++||++|.|+++ |++.+ +.+|.|...
T Consensus 185 ---~~~l~~----------~--g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l-~~i~~~~~~-------- 240 (439)
T 3j2k_7 185 ---VPFLKK----------V--GFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYL-DNLPNFNRS-------- 240 (439)
T ss_pred ---HHHHHH----------h--cccccCCeeEEEeeccCCcccccccccccccCchHHHHHH-HhCCCCccC--------
Confidence 000000 0 00001246899999999999988 44444 457766543
Q ss_pred cccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ec
Q psy5021 291 INLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VG 368 (1021)
Q Consensus 291 ~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~g 368 (1021)
.++|+...|..++. +.|+++.|||.+|+|++||.|...+.+.+.+|+.|+. ...++++|.|||.+++ .|
T Consensus 241 ---~~~p~r~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~----~~~~~~~a~aG~~v~~~l~g 311 (439)
T 3j2k_7 241 ---VDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS----DDTETDFVAPGENLKIRLKG 311 (439)
T ss_pred ---CCCCeEEEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE----CCeEcCEecCCCcceEEEec
Confidence 57899999999875 4699999999999999999999999888899999865 3568999999999994 67
Q ss_pred CC--ccccCCeeccCCcc
Q psy5021 369 LK--ESSTGDTLCSLSEN 384 (1021)
Q Consensus 369 l~--~~~~gdtl~~~~~~ 384 (1021)
++ +++.||+|++++.+
T Consensus 312 i~~~~i~rG~vl~~~~~~ 329 (439)
T 3j2k_7 312 IEEEEILPGFILCDPSNL 329 (439)
T ss_pred cchhhcCCcEEecCCCCC
Confidence 66 58899999987643
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=321.19 Aligned_cols=268 Identities=25% Similarity=0.355 Sum_probs=213.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc-cCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV-HHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
..||+++||+|||||||+++|+..... .|.. ....+.+|+.+.|+++|+|+......+.+. ++.++||||||
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~~~iiDtpG 75 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAE---GGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA----ARHYAHTDCPG 75 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHH---TTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS----SCEEEEEECSS
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhh---cCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC----CeEEEEEECCC
Confidence 468999999999999999999864211 1110 112345788899999999999887777666 78999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC--HHHHHHHHHHHhCCceee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN--YNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~--~~~~~~~i~~~l~~~~~~ 163 (1021)
|.+|...+.++++.+|++|+|+|+++|...|++++|..+...++| +++++||+|+.... ++...+++++.+
T Consensus 76 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l------ 149 (397)
T 1d2e_A 76 HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL------ 149 (397)
T ss_dssp HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHH------
Confidence 999999999999999999999999999999999999999999999 57899999986410 011111111111
Q ss_pred eeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIR 243 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~ 243 (1021)
.
T Consensus 150 -------------------------------------------------------------------------------~ 150 (397)
T 1d2e_A 150 -------------------------------------------------------------------------------T 150 (397)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred HHHhcCceeEEEeccccCcc---------c-HHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCce
Q psy5021 244 KLVLKNKIIPIMCGSSLKNK---------G-IEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGS 313 (1021)
Q Consensus 244 ~~~~~~~~~Pv~~~Sa~~~~---------G-i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~ 313 (1021)
..-.....+|++++||++|. | +++|+++|.+++|.|... .++|+.+.|++++.++++|.
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~-----------~~~p~~~~v~~v~~~~~~G~ 219 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRD-----------LEKPFLLPVESVYSIPGRGT 219 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCC-----------TTSCCEEECCEEEEETTTEE
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCC-----------CCCcEEEEEEEEEEeCCceE
Confidence 00001123689999999976 4 999999999999988653 57899999999999999999
Q ss_pred EEEEEEEeeEEecCCEEEeCCCc--eeeEeceEEEeecCCeeccccccCCCEEEEe--cC--CccccCCeeccCC
Q psy5021 314 LSFIRIYSGFIKVGDLVYNSTKK--VKEKIFRILRMFANSKKDINDAHFGDIVVIV--GL--KESSTGDTLCSLS 382 (1021)
Q Consensus 314 ~~~~RV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~gdtl~~~~ 382 (1021)
++++||++|+|++||.|.+.+.+ ...+|.+|... ..++++|.|||++++. |+ +++..||+|+.+.
T Consensus 220 v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 220 VVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp EEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred EEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 99999999999999999876653 67788888543 3678999999999885 65 5689999999865
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=323.43 Aligned_cols=274 Identities=23% Similarity=0.310 Sum_probs=208.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---------cccCC----cccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIG---------EVHHG----TTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g---------~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
...+||+++||+|||||||+++|++..+.+...+ +...+ .+++|+.++|+++|+|++.....+.+.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 5689999999999999999999998866654311 00011 246899999999999999998888887
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
++.++|||||||.+|...+.++++.+|++|+|+|+++| +..|+++++..+...++| +++++||+|+..+
T Consensus 83 ---~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 83 ---KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp ---SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred ---CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 89999999999999999999999999999999999999 888999999999988975 8899999999764
Q ss_pred CH-----HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcC
Q psy5021 145 NY-----NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSN 219 (1021)
Q Consensus 145 ~~-----~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 219 (1021)
++ +...+++++.+
T Consensus 160 ~~~~~~~~~~~~~i~~~~-------------------------------------------------------------- 177 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFM-------------------------------------------------------------- 177 (435)
T ss_dssp TTCHHHHHHHHHHHHHHH--------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 32 11122222111
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------HHHHHHHHhCCCCccccccCC
Q psy5021 220 NDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------FLLNSICEYLPSPYDVDFKNN 287 (1021)
Q Consensus 220 ~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~~ 287 (1021)
...-.....+|++++||++|.|+. .|+++|.. +|+|...
T Consensus 178 -----------------------~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~----- 228 (435)
T 1jny_A 178 -----------------------RSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKP----- 228 (435)
T ss_dssp -----------------------HHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCG-----
T ss_pred -----------------------HHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCC-----
Confidence 000000113688999999999986 78898755 5556432
Q ss_pred ccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe
Q psy5021 288 DYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV 367 (1021)
Q Consensus 288 ~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 367 (1021)
.+.|+.+.|..++..++.|+++++||++|+|++||.|++.+.+...+|++|... ..++++|.|||++++.
T Consensus 229 ------~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~ 298 (435)
T 1jny_A 229 ------VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH----HTKMDKAEPGDNIGFN 298 (435)
T ss_dssp ------GGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET----TEEESEECTTCEEEEE
T ss_pred ------CCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC----CcEEeEEcCCCEEEEE
Confidence 357888889999999999999999999999999999999988899999999553 4689999999999983
Q ss_pred --c--CCccccCCeeccCCcc
Q psy5021 368 --G--LKESSTGDTLCSLSEN 384 (1021)
Q Consensus 368 --g--l~~~~~gdtl~~~~~~ 384 (1021)
| .+++.+||+|+....+
T Consensus 299 l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 299 VRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp EESSCGGGCCTTCEEECTTSC
T ss_pred EecCCHHHcCCccEecCCCCC
Confidence 4 4568999999987533
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-32 Score=308.49 Aligned_cols=243 Identities=16% Similarity=0.092 Sum_probs=197.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.+||+++||+|||||||+++|+ ++|+|++.....+.|. ++.++|||||||
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~--------------------------~~giTi~~~~~~~~~~----~~~i~iiDtPGh 70 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG--------------------------KKGTSSDITMYNNDKE----GRNMVFVDAHSY 70 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS--------------------------EEEEESSSEEEEECSS----SSEEEEEECTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHH--------------------------hCCEEEEeeEEEEecC----CeEEEEEECCCh
Confidence 4599999999999999999994 5789999888888777 889999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEe-CcCCCCCC-HHHHHHHHHHHhCCceeee
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVN-KMDRIGAN-YNNCIIDIKKKFNCIVLPI 164 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviN-K~D~~~~~-~~~~~~~i~~~l~~~~~~~ 164 (1021)
.+|...+.++++.+|++|+|+| .+|+..|++++|..+...++|. ++++| |+|+ ..+ .++..+++++.+...
T Consensus 71 ~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~---- 144 (370)
T 2elf_A 71 PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT---- 144 (370)
T ss_dssp TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS----
T ss_pred HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc----
Confidence 9999999999999999999999 9999999999999999999999 88999 9998 432 122333333332110
Q ss_pred eeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHH
Q psy5021 165 NFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRK 244 (1021)
Q Consensus 165 ~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~ 244 (1021)
T Consensus 145 -------------------------------------------------------------------------------- 144 (370)
T 2elf_A 145 -------------------------------------------------------------------------------- 144 (370)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceeEEEe--ccccC---cccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEE
Q psy5021 245 LVLKNKIIPIMC--GSSLK---NKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRI 319 (1021)
Q Consensus 245 ~~~~~~~~Pv~~--~Sa~~---~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV 319 (1021)
....+|+++ +||++ +.|+++|++.|.+++|+|...... ....|+..+|..++..++.|+++++||
T Consensus 145 ---~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~~-------~~~~p~r~~v~~vf~~~~~G~v~~g~v 214 (370)
T 2elf_A 145 ---VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAE-------LNSLPARIFIDHAFNVTGKGCVVLGVV 214 (370)
T ss_dssp ---TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHHH-------GGGSCCEEEEEEEECCC---CEEEEEE
T ss_pred ---CCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCCcc-------cccccccccceeEEEcCCCceEEEEEE
Confidence 012468999 99999 999999999999999876221000 013456777888888889999999999
Q ss_pred EeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe--cC--CccccCCeecc
Q psy5021 320 YSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV--GL--KESSTGDTLCS 380 (1021)
Q Consensus 320 ~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~gdtl~~ 380 (1021)
++|+++.||.|++.+.+...+|.+|.. + ..++++|.|||++++. |+ +++++||+|+.
T Consensus 215 ~~G~l~~gd~v~~~p~~~~~~V~~i~~-~---~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 215 KQGISKDKDKTKIFPLDRDIEIRSIQS-H---DVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp EESEEETTCEEEEETTTEEEEEEEEEE-T---TEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred ECCEEeeCCEEEECCCCcEEEEeEEEE-C---CCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 999999999999999899999999854 3 2789999999999996 54 56899999998
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-32 Score=329.49 Aligned_cols=273 Identities=19% Similarity=0.258 Sum_probs=185.1
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc------------ccc-cCCcccccChHHHhhhCceeeeeeeEEEee
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI------------GEV-HHGTTITDWMQQEQERGITITSASVSIFWE 71 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~------------g~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~ 71 (1021)
...++||+|+||+|||||||+++|++..+.+... |.- -...+++|..+.|+++|+|++.....+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4568999999999999999999999887766432 100 011568899999999999999999888888
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-------chhHHHHHHHHhhcCCC-EEEEEeCcCCCC
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-------QPQTETVWFQSQKYKVP-KMIFVNKMDRIG 143 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-------~~~t~~~~~~~~~~~~p-~iiviNK~D~~~ 143 (1021)
++.++|||||||.+|...+..+++.+|++|+|||+++|. ..|+.+++..+...++| +|+|+||+|+..
T Consensus 254 ----~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 ----KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ---------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred ----CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 889999999999999999999999999999999999864 89999999999999998 888999999976
Q ss_pred CCH---HHHHHHHHHHh-CCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcC
Q psy5021 144 ANY---NNCIIDIKKKF-NCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSN 219 (1021)
Q Consensus 144 ~~~---~~~~~~i~~~l-~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 219 (1021)
.+. .....++.+.+ ...
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~----------------------------------------------------------- 350 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMV----------------------------------------------------------- 350 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTS-----------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHhh-----------------------------------------------------------
Confidence 442 22222222222 000
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH--------------HHHHHHHHhCCCCcccccc
Q psy5021 220 NDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE--------------FLLNSICEYLPSPYDVDFK 285 (1021)
Q Consensus 220 ~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~--------------~Ll~~i~~~lP~p~~~~~~ 285 (1021)
.+ ....+|++++||++|.|+. .|++.|..++|++..
T Consensus 351 ------------g~--------------~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~~---- 400 (592)
T 3mca_A 351 ------------GF--------------KTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKP---- 400 (592)
T ss_dssp ------------CC--------------CGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSCT----
T ss_pred ------------CC--------------CccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcccccc----
Confidence 00 0123688999999999997 899999998883322
Q ss_pred CCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccc-cccCCCEE
Q psy5021 286 NNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIN-DAHFGDIV 364 (1021)
Q Consensus 286 ~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~-~a~aGdIv 364 (1021)
.+.|+.+.|..++.. +.|++..|||.+|+|++||.|...+.+...+|+.|.. ...+++ +|.|||+|
T Consensus 401 --------~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~----~~~~~~~~a~aG~~v 467 (592)
T 3mca_A 401 --------YRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIR----NSDPSSTWAVAGDTV 467 (592)
T ss_dssp --------TTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEEC----SSSCSCCEEETTCEE
T ss_pred --------ccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEE----cCccCcceecCCCEE
Confidence 578999999999999 8899999999999999999999999888899999874 246799 99999999
Q ss_pred EE--ecCC--ccccCCeeccCCc
Q psy5021 365 VI--VGLK--ESSTGDTLCSLSE 383 (1021)
Q Consensus 365 ~i--~gl~--~~~~gdtl~~~~~ 383 (1021)
++ .|++ ++..||+||.+..
T Consensus 468 ~~~l~~i~~~~i~rG~vl~~~~~ 490 (592)
T 3mca_A 468 TLQLADIEVNQLRPGDILSNYEN 490 (592)
T ss_dssp EEEESSSCGGGCCTTCEEECSSS
T ss_pred EEEEccccccccceEEEeccCCC
Confidence 96 5765 4899999998754
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=325.72 Aligned_cols=271 Identities=26% Similarity=0.356 Sum_probs=201.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc-cCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV-HHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
.....||+++||+|||||||+++|+.... ..|.. ....+.+|..+.|+++|+|++.....+.+. ++.++|||
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~---~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~----~~kI~IID 365 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLA---KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP----TRHYAHVD 365 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHH---HHSCC---------------------CCSCEEEECS----SCEEEEEE
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhc---cccccccccccccccccccccCceeEEEEEEEEcCC----CEEEEEEE
Confidence 34578999999999999999999986421 01100 011236788899999999999988777766 88999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC--HHHHHHHHHHHhCCc
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN--YNNCIIDIKKKFNCI 160 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~--~~~~~~~i~~~l~~~ 160 (1021)
||||.+|...+.++++.+|++|+|||+++|+..|++++|..+...++| +|+|+||+|+.... ++.+.+++++.+
T Consensus 366 TPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL--- 442 (1289)
T 3avx_A 366 CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELL--- 442 (1289)
T ss_dssp CCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH---
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHH---
Confidence 999999999999999999999999999999999999999999999999 68899999997421 011111111111
Q ss_pred eeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHH
Q psy5021 161 VLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKN 240 (1021)
Q Consensus 161 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~ 240 (1021)
T Consensus 443 -------------------------------------------------------------------------------- 442 (1289)
T 3avx_A 443 -------------------------------------------------------------------------------- 442 (1289)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceeEEEeccccCc--------ccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCc
Q psy5021 241 SIRKLVLKNKIIPIMCGSSLKN--------KGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLG 312 (1021)
Q Consensus 241 ~~~~~~~~~~~~Pv~~~Sa~~~--------~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g 312 (1021)
.+.-.....+|++++||++| .|+++|+++|.+++|.|... .++|+.+.|..++.++++|
T Consensus 443 --k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~-----------~d~Pfr~pId~Vf~i~G~G 509 (1289)
T 3avx_A 443 --SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-----------IDKPFLLPIEDVFSISGRG 509 (1289)
T ss_dssp --HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCG-----------GGSCCEEECCEEEEETTTE
T ss_pred --HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccc-----------cccceeeeccccccccCCc
Confidence 00000112468999999999 68999999999999988653 4689999999999999999
Q ss_pred eEEEEEEEeeEEecCCEEEeCCCc--eeeEeceEEEeecCCeeccccccCCCEEEEe--cC--CccccCCeeccCC
Q psy5021 313 SLSFIRIYSGFIKVGDLVYNSTKK--VKEKIFRILRMFANSKKDINDAHFGDIVVIV--GL--KESSTGDTLCSLS 382 (1021)
Q Consensus 313 ~~~~~RV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~gdtl~~~~ 382 (1021)
+++++||++|+|++||.|...+.+ ...+|+.|.. + ..++++|.|||++++. |+ +++..||+|+.+.
T Consensus 510 tVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~-~---~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 510 TVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEM-F---RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp EEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEEC-S---SCEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred EEEEEEEeccEEecCCEEEEecCCCceeEEEEEEee-c---CceeeEEecCCcceeEeeecchhcCCcccEEecCC
Confidence 999999999999999999977665 6788888843 2 3578999999999884 66 4689999999865
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=311.40 Aligned_cols=274 Identities=23% Similarity=0.287 Sum_probs=184.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc------------ccccc-CCcccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHK------------IGEVH-HGTTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~------------~g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
...+||+++||+|||||||+++|++.++.+.. .|... .-.+.+|..+.|+++|+|++.....+.+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 45689999999999999999999988876642 11100 11457899999999999999998888887
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-------chhHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-------QPQTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-------~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
++.++|||||||.+|...+.++++.+|++|+|||+++|+ ..|+++++..+...++| +++++||+|+...
T Consensus 120 ---~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 120 ---HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV 196 (467)
T ss_dssp ---SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred ---CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCc
Confidence 899999999999999999999999999999999999997 37999999999999998 8999999999754
Q ss_pred CH-----HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcC
Q psy5021 145 NY-----NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSN 219 (1021)
Q Consensus 145 ~~-----~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 219 (1021)
++ +.+.+++++.+.
T Consensus 197 ~~~~~~~~~i~~e~~~~l~------------------------------------------------------------- 215 (467)
T 1r5b_A 197 QWSEERYKECVDKLSMFLR------------------------------------------------------------- 215 (467)
T ss_dssp SSCHHHHHHHHHHHHHHHH-------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 32 111111111110
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH--------------HHHHHHHhCCCCcccccc
Q psy5021 220 NDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF--------------LLNSICEYLPSPYDVDFK 285 (1021)
Q Consensus 220 ~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~--------------Ll~~i~~~lP~p~~~~~~ 285 (1021)
.++ .+.. ..-+|++++||++|.|+.+ |++.| +.+|.|...
T Consensus 216 -------~~~--g~~~-------------~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~~--- 269 (467)
T 1r5b_A 216 -------RVA--GYNS-------------KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLERK--- 269 (467)
T ss_dssp -------HHH--CCCH-------------HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHHH---
T ss_pred -------Hhc--CCCc-------------cCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcCC---
Confidence 000 0000 0136899999999999864 55555 557776542
Q ss_pred CCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEE
Q psy5021 286 NNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVV 365 (1021)
Q Consensus 286 ~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~ 365 (1021)
.++|+.+.|..++.+ .|+++.|||.+|+|++||.|...+.+...+|..|+.. ...++++|.|||.++
T Consensus 270 --------~~~p~~~~v~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~---~~~~~~~a~aG~~v~ 336 (467)
T 1r5b_A 270 --------VNAPFIMPIASKYKD--LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE---ADEEISSSICGDQVR 336 (467)
T ss_dssp --------HTSCCEEECCEEEES--SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT---TCCEESEEETTCEEE
T ss_pred --------CCCCcEEEEEEEEeC--CCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc---CCcEeeEEcCCCEEE
Confidence 468999999998764 6899999999999999999999888888888888542 256799999999999
Q ss_pred E--ec-CCccccCCeeccCCc
Q psy5021 366 I--VG-LKESSTGDTLCSLSE 383 (1021)
Q Consensus 366 i--~g-l~~~~~gdtl~~~~~ 383 (1021)
+ .| .+++..||+|+.+..
T Consensus 337 i~l~g~~~~i~rG~vl~~~~~ 357 (467)
T 1r5b_A 337 LRVRGDDSDVQTGYVLTSTKN 357 (467)
T ss_dssp EEEESCCTTCCTTCEEECSSS
T ss_pred EEEeccHhhCCceEEEeCCCC
Confidence 9 56 567999999998653
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=303.80 Aligned_cols=273 Identities=23% Similarity=0.186 Sum_probs=208.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc------------cccc---CCcccccChHHHhhhCceeeeeeeEEE
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI------------GEVH---HGTTITDWMQQEQERGITITSASVSIF 69 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~------------g~~~---~~~~~~d~~~~e~~rgiTi~~~~~~~~ 69 (1021)
.+..+||+++||+|||||||+++|++..+.+... |... .....+|..+.|+++|+|++.+...+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3457899999999999999999999887654321 1100 112357888999999999998888887
Q ss_pred eecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCHHH
Q psy5021 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANYNN 148 (1021)
Q Consensus 70 ~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~ 148 (1021)
+. ++.++|||||||.+|...+.++++.+|++|+|+|+++|...|+.+++..+...++| +++|+||+|+...+.+.
T Consensus 101 ~~----~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TA----KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CS----SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHH
T ss_pred cC----CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHH
Confidence 77 88999999999999999999999999999999999999999999999999888886 78899999997643211
Q ss_pred ---HHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHH
Q psy5021 149 ---CIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFL 225 (1021)
Q Consensus 149 ---~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~ 225 (1021)
..+++++.+.
T Consensus 177 ~~~i~~~~~~~~~------------------------------------------------------------------- 189 (434)
T 1zun_B 177 FESIKADYLKFAE------------------------------------------------------------------- 189 (434)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 1111111110
Q ss_pred HHHHcCCCCHHHHHHHHHHHHh-cCceeEEEeccccCcccHHH------------HHHHHHHhCCCCccccccCCccccc
Q psy5021 226 EKYINNNYSINDIKNSIRKLVL-KNKIIPIMCGSSLKNKGIEF------------LLNSICEYLPSPYDVDFKNNDYNIN 292 (1021)
Q Consensus 226 e~~l~~~~~~~~~~~~~~~~~~-~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~ 292 (1021)
.+. ....+|++++||++|.|+++ |++. .+.+|.|...
T Consensus 190 -------------------~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~-l~~i~~~~~~---------- 239 (434)
T 1zun_B 190 -------------------GIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEI-LETVEIASDR---------- 239 (434)
T ss_dssp -------------------TTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHH-HHHSCCTTCC----------
T ss_pred -------------------HhCCCccCceEEEEeccCCCCcccccccCccccCchHHHH-HhcCCCcccC----------
Confidence 000 01237899999999999986 5554 4557766542
Q ss_pred cCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCC--
Q psy5021 293 LNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLK-- 370 (1021)
Q Consensus 293 ~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~-- 370 (1021)
.+.|+.+.|..++...+.|+...|||.+|+|++||.|...+.++..+|++|.... .++++|.|||++++...+
T Consensus 240 -~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~ 314 (434)
T 1zun_B 240 -NYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAVTLTMEDEI 314 (434)
T ss_dssp -CSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEEEEEESSCC
T ss_pred -CCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC----cceeEecCCCEEEEEeCCcc
Confidence 4678999998888766667778899999999999999999888889999997653 469999999999997544
Q ss_pred ccccCCeeccCCc
Q psy5021 371 ESSTGDTLCSLSE 383 (1021)
Q Consensus 371 ~~~~gdtl~~~~~ 383 (1021)
+++.||+|+....
T Consensus 315 ~i~~G~~l~~~~~ 327 (434)
T 1zun_B 315 DISRGDLLVHADN 327 (434)
T ss_dssp CCCTTCEEEETTS
T ss_pred ccCCccEEECCCC
Confidence 4789999998654
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=301.56 Aligned_cols=261 Identities=25% Similarity=0.297 Sum_probs=199.4
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc-----------
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN----------- 73 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~----------- 73 (1021)
....+||+++||+|||||||+++|+. ...|..++|+++|+|+......+.+...
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g---------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~ 71 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTG---------------VWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 71 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHT---------------CCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSB
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhC---------------CccccChhhhcCCcEEEEeeeeeeccccccccccccccc
Confidence 35678999999999999999999951 1346677899999999888776665320
Q ss_pred ----cC----ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhhcCC-CEEEEEeCcCCCC
Q psy5021 74 ----KF----KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQKYKV-PKMIFVNKMDRIG 143 (1021)
Q Consensus 74 ----~~----~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~~~~-p~iiviNK~D~~~ 143 (1021)
+. .+.++|||||||.+|..++.+++..+|++|+|+|+++|. +.||.++|..+...++ |+++|+||+|+..
T Consensus 72 ~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 72 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp CTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred ccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 11 278999999999999999999999999999999999998 9999999998887776 6888999999864
Q ss_pred CCH-HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCH
Q psy5021 144 ANY-NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDE 222 (1021)
Q Consensus 144 ~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~ 222 (1021)
.+. .+..+++++.+
T Consensus 152 ~~~~~~~~~~i~~~l----------------------------------------------------------------- 166 (410)
T 1kk1_A 152 KEKALENYRQIKEFI----------------------------------------------------------------- 166 (410)
T ss_dssp HHHHHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 321 11122222111
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEE
Q psy5021 223 FFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLV 302 (1021)
Q Consensus 223 ~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V 302 (1021)
++ . ....+|++++||++|.|+++|+++|.+++|.|... .+.|+.++|
T Consensus 167 -------~~--------------~-~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~-----------~~~~~~~~v 213 (410)
T 1kk1_A 167 -------EG--------------T-VAENAPIIPISALHGANIDVLVKAIEDFIPTPKRD-----------PNKPPKMLV 213 (410)
T ss_dssp -------TT--------------S-TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC-----------TTSCCEEEE
T ss_pred -------Hh--------------c-CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccc-----------cCCCcEEEE
Confidence 00 0 01236899999999999999999999999988653 467889999
Q ss_pred EEEee--------cCCCceEEEEEEEeeEEecCCEEEeCCCce------------eeEeceEEEeecCCeeccccccCCC
Q psy5021 303 FKIFH--------DPFLGSLSFIRIYSGFIKVGDLVYNSTKKV------------KEKIFRILRMFANSKKDINDAHFGD 362 (1021)
Q Consensus 303 ~k~~~--------~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~g~~~~~v~~a~aGd 362 (1021)
.+++. ++++|.++++||++|+|++||.|.+.+.++ ..+|..|. . ...++++|.|||
T Consensus 214 ~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~---~-~~~~v~~a~aG~ 289 (410)
T 1kk1_A 214 LRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ---A-GGQFVEEAYPGG 289 (410)
T ss_dssp EEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE---E-TTEEESEECSSS
T ss_pred EEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEE---E-CCeEecEEcCCC
Confidence 88763 456899999999999999999999865432 34555554 2 257899999999
Q ss_pred EEEEe-cC------CccccCCeeccCC
Q psy5021 363 IVVIV-GL------KESSTGDTLCSLS 382 (1021)
Q Consensus 363 Iv~i~-gl------~~~~~gdtl~~~~ 382 (1021)
++++. ++ .++..|++|+.+.
T Consensus 290 ~v~~~~~~~~~~~~~d~~~G~vl~~~~ 316 (410)
T 1kk1_A 290 LVGVGTKLDPYLTKGDLMAGNVVGKPG 316 (410)
T ss_dssp CEEEEESSCGGGTGGGTTTTCEEECTT
T ss_pred EEEEEEecCcccchhhccceeEEecCC
Confidence 88884 22 2467899998765
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-31 Score=309.90 Aligned_cols=266 Identities=26% Similarity=0.361 Sum_probs=200.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----CeEEEEEecCChhh
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----NKHYAHVDCPGHAD 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----~~~i~liDtpG~~~ 726 (1021)
.+.+++||+|||||||+++|+.....+..... ..+++|....|+++|+|+......+.+. ...++|||||||.+
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~-~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREK-REQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccc-cccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 46789999999999999999875443332221 2356799999999999998877776553 26789999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
|...+..+++.+|++|+||||++|...|+.++|..+...++| +|+|+||+|+.+.. .+...+++.+. +++. .
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~--~~~v~~el~~~---lg~~--~ 157 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSAD--VDRVKKQIEEV---LGLD--P 157 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHHHT---SCCC--G
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccC--HHHHHHHHHHh---hCCC--c
Confidence 999999999999999999999999999999999999999999 89999999997632 33333444443 3442 1
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEE
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~ 886 (1021)
.+++++||++|. |+++|+++|.+.+|.|....+.|+++.|.+++..++.|+++.|+|.+|++++||.|.
T Consensus 158 ~~vi~vSAktg~-----------GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~ 226 (600)
T 2ywe_A 158 EEAILASAKEGI-----------GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIM 226 (600)
T ss_dssp GGCEECBTTTTB-----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEE
T ss_pred ccEEEEEeecCC-----------CchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEE
Confidence 348999999884 899999999998988887788999999999999999999999999999999999999
Q ss_pred EeecCCeeEEEEEEEEecc---cccceeccCceEEEEeccc-CccCcccceEEeeCCC
Q psy5021 887 IVGYKQTIKTTITGIEMFK---KTLDEGLAGENVGILLRSV-KREEVERGQVLAKIGS 940 (1021)
Q Consensus 887 i~p~~~~~~~~Vksi~~~~---~~~~~a~~G~~v~l~l~~~-~~~~i~~G~vl~~~~~ 940 (1021)
+.|.+. ..+|+++...+ .+++++.|||.+.+. .++ +..++++||+||+.+.
T Consensus 227 ~~~~~~--~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GDtl~~~~~ 281 (600)
T 2ywe_A 227 LMSTGK--EYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGDTITHAKN 281 (600)
T ss_dssp ETTTTE--EEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTCEEEESSS
T ss_pred eccccc--eEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCCEEEeCCC
Confidence 988654 45677776543 578999999965554 566 4678999999998654
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=305.32 Aligned_cols=281 Identities=21% Similarity=0.223 Sum_probs=203.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc------------ccc-cCCcccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI------------GEV-HHGTTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~------------g~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
....||+++||+|+|||||+++|++..+.+... |.- -...+++|..+.|+++|+|++.....+.+.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 345799999999999999999999887765431 110 112567899999999999999998888887
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
++.++|||||||.+|...+..+++.+|++|+|+|+++| +..|+.+++..+...++| +|+|+||+|+...
T Consensus 110 ---~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 ---RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp ---SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT
T ss_pred ---CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc
Confidence 89999999999999999999999999999999999998 678999999999888865 8899999999753
Q ss_pred CHHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHH
Q psy5021 145 NYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFF 224 (1021)
Q Consensus 145 ~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l 224 (1021)
+.. ..+++.+.+
T Consensus 187 ~~~-~~~~i~~~~------------------------------------------------------------------- 198 (483)
T 3p26_A 187 SQQ-RFEEIKSKL------------------------------------------------------------------- 198 (483)
T ss_dssp CHH-HHHHHHHHH-------------------------------------------------------------------
T ss_pred hHH-HHHHHHHHH-------------------------------------------------------------------
Confidence 321 111111111
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH------------------HHHHHHHhCCC--Cccccc
Q psy5021 225 LEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF------------------LLNSICEYLPS--PYDVDF 284 (1021)
Q Consensus 225 ~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------------Ll~~i~~~lP~--p~~~~~ 284 (1021)
...+.+.-.....+|++++||++|.|+++ +|+.+...+|. |...
T Consensus 199 --------------~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~-- 262 (483)
T 3p26_A 199 --------------LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGIN-- 262 (483)
T ss_dssp --------------HHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCC--
T ss_pred --------------HHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhccccccccc--
Confidence 00000000011247899999999999863 45555555554 3322
Q ss_pred cCCccccccCCCceEEEEEEEeecC---CCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEee----cCCeecccc
Q psy5021 285 KNNDYNINLNSNKFVSLVFKIFHDP---FLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMF----ANSKKDIND 357 (1021)
Q Consensus 285 ~~~~~~~~~~~~p~~~~V~k~~~~~---~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~----g~~~~~v~~ 357 (1021)
.+.|+.+.|..++..+ +.|++..|||.+|+|++||.|...+.+...+|+.|.... |..+.++++
T Consensus 263 ---------~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~ 333 (483)
T 3p26_A 263 ---------KDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDV 333 (483)
T ss_dssp ---------SSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESC
T ss_pred ---------CCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccE
Confidence 5689999999999877 479999999999999999999999989899999997653 445688999
Q ss_pred ccCCCEEEE----ecCCccccCCeeccCCc
Q psy5021 358 AHFGDIVVI----VGLKESSTGDTLCSLSE 383 (1021)
Q Consensus 358 a~aGdIv~i----~gl~~~~~gdtl~~~~~ 383 (1021)
|.|||.|++ .+.+++..||+|++.+.
T Consensus 334 a~aG~~v~~~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 334 AIKGDFVTLKLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp EETTCEEEEEEESCCGGGCCTTCEEECTTC
T ss_pred ECCCCEEEEEEEecccccCCceEEEEcCCC
Confidence 999999999 33467899999998765
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=303.24 Aligned_cols=273 Identities=25% Similarity=0.318 Sum_probs=215.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc---------ccccCC----cccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI---------GEVHHG----TTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~---------g~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
....||+++||+|||||||+++|++..+.+... .+...+ ..++|..+.|+++|+|++.....+.+.
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~- 83 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP- 83 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS-
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC-
Confidence 456899999999999999999999876554321 111112 235688899999999999998888877
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCch-------hHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP-------QTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~-------~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
++.++|||||||.+|...+..+++.+|++|+|||+++|... |+.++|..+...++| +++|+||+|+...
T Consensus 84 ---~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 84 ---KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp ---SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTT
T ss_pred ---CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccC
Confidence 88999999999999999999999999999999999998765 999999999889997 8889999999643
Q ss_pred CHH---HHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCC
Q psy5021 145 NYN---NCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNND 221 (1021)
Q Consensus 145 ~~~---~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d 221 (1021)
+.+ ...+++++.+
T Consensus 161 ~~~~~~~i~~~~~~~l---------------------------------------------------------------- 176 (458)
T 1f60_A 161 DESRFQEIVKETSNFI---------------------------------------------------------------- 176 (458)
T ss_dssp CHHHHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 221 1112221111
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------------------HHHHHHHHhCC
Q psy5021 222 EFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------------------FLLNSICEYLP 277 (1021)
Q Consensus 222 ~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------------------~Ll~~i~~~lP 277 (1021)
...-.....+|++++||++|.|+. .|+++|.. +|
T Consensus 177 ---------------------~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~ 234 (458)
T 1f60_A 177 ---------------------KKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IE 234 (458)
T ss_dssp ---------------------HHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SC
T ss_pred ---------------------HHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cC
Confidence 000000013678889999999975 58888654 55
Q ss_pred CCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeecccc
Q psy5021 278 SPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIND 357 (1021)
Q Consensus 278 ~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 357 (1021)
.|... .+.|+.++|..++..++.|+++.|||.+|+++.||.|...+.+...+|.+|... ..++++
T Consensus 235 ~p~~~-----------~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~ 299 (458)
T 1f60_A 235 QPSRP-----------TDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH----HEQLEQ 299 (458)
T ss_dssp CCCCC-----------TTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET----TEECSC
T ss_pred CCccc-----------CCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEEC----CeEEEE
Confidence 55432 578999999999999999999999999999999999998888888899998642 357899
Q ss_pred ccCCCEEEEe--cC--CccccCCeeccCCc
Q psy5021 358 AHFGDIVVIV--GL--KESSTGDTLCSLSE 383 (1021)
Q Consensus 358 a~aGdIv~i~--gl--~~~~~gdtl~~~~~ 383 (1021)
|.|||.+++. |+ ++++.|++|+....
T Consensus 300 a~aG~~v~i~l~gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 300 GVPGDNVGFNVKNVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp BCTTCEEEEEESSCCTTTSCTTCEEEETTS
T ss_pred EcCCCEEEEEEcCCcccccCceeEEecCCC
Confidence 9999999983 65 56899999998753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=302.44 Aligned_cols=144 Identities=21% Similarity=0.265 Sum_probs=105.6
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh----------
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH---------- 724 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~---------- 724 (1021)
+++|++|+|||||+|+|++.... ..+...|+|.+.....++.++..+.||||||+
T Consensus 179 ~lvG~~nvGKSSLin~l~~~~~~---------------~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~ 243 (436)
T 2hjg_A 179 CLIGRPNVGKSSLVNAMLGEERV---------------IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETT 243 (436)
T ss_dssp EEECSTTSSHHHHHHHHHTSTTE---------------EEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCC
T ss_pred EEEcCCCCCHHHHHHHHhCCCce---------------eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchH
Confidence 45677999999999999985321 12335578888888888889999999999998
Q ss_pred hhhHHH-HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchh-hHHHHHHHHHHHhhhcccc
Q psy5021 725 ADYIKN-MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDK-ELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 725 ~~~~~~-~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~-~~~~~~~~~~~~~l~~~~~ 802 (1021)
++|... +..+++.+|++++|+|++++...|+.+++..+...++| +|+|+||+|+.+.. ...++..+++.+.+....
T Consensus 244 e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~- 321 (436)
T 2hjg_A 244 EKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD- 321 (436)
T ss_dssp SHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGT-
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECccCCCcchHHHHHHHHHHHHhcccCC-
Confidence 556443 45678999999999999999999999988888888988 99999999998632 223445556655554433
Q ss_pred CCCceEEEEecccccc
Q psy5021 803 DGENTKIVIGSALLAL 818 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~ 818 (1021)
.++++++||++|.
T Consensus 322 ---~~~~~~~SA~tg~ 334 (436)
T 2hjg_A 322 ---YAPILFMSALTKK 334 (436)
T ss_dssp ---TSCEEECCTTTCT
T ss_pred ---CCCEEEEecccCC
Confidence 3689999999884
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=305.09 Aligned_cols=266 Identities=26% Similarity=0.369 Sum_probs=195.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----CeEEEEEecCChhh
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----NKHYAHVDCPGHAD 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----~~~i~liDtpG~~~ 726 (1021)
...+++||++||||||+++|+.....+..... ..+++|....|+++|+|+......+.+. +..++|||||||.+
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~-~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREM-EAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccc-cccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 46789999999999999999875544433222 3356799999999999999888877664 36889999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
|...+..+++.+|++|+|+|+++|...|+.++|..+...++| +|+|+||+|+.+.. .+...+++.+. +++..
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~--~~~v~~ei~~~---lg~~~-- 155 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD--PERVAEEIEDI---VGIDA-- 155 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHHHH---TCCCC--
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccccc--HHHHHHHHHHH---hCCCc--
Confidence 999999999999999999999999999999999999999999 89999999997632 33334444444 34322
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEE
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~ 886 (1021)
..++++||++|. |+++|+++|.+.+|.|....+.|+++.|.+++..++.|.++.|+|.+|++++||++.
T Consensus 156 ~~vi~vSAktg~-----------GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~ 224 (599)
T 3cb4_D 156 TDAVRCSAKTGV-----------GVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVK 224 (599)
T ss_dssp TTCEEECTTTCT-----------THHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEE
T ss_pred ceEEEeecccCC-----------CchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEE
Confidence 247999999873 899999999998988888888999999999999999999999999999999999999
Q ss_pred EeecCCeeEEEEEEEEec---ccccceeccCceEEEEeccc-CccCcccceEEeeCCC
Q psy5021 887 IVGYKQTIKTTITGIEMF---KKTLDEGLAGENVGILLRSV-KREEVERGQVLAKIGS 940 (1021)
Q Consensus 887 i~p~~~~~~~~Vksi~~~---~~~~~~a~~G~~v~l~l~~~-~~~~i~~G~vl~~~~~ 940 (1021)
+.+.++. .+|.++... ..+++++.+||.+ ..+.++ +..++++||+|++.+.
T Consensus 225 ~~~~~~~--~~v~~i~~~~~~~~~~~~~~aGdi~-~~~~gi~~~~~~~~GDtl~~~~~ 279 (599)
T 3cb4_D 225 VMSTGQT--YNADRLGIFTPKQVDRTELKCGEVG-WLVCAIKDIHGAPVGDTLTLARN 279 (599)
T ss_dssp ETTTCCE--EECCEEEEESSSEEECSEECTTCEE-EEECCCSSGGGSCTTCEEEESSS
T ss_pred eccccce--eEEeeeeeccCCceECCEEcCCCee-EeeccccccccCccCCEeeecCC
Confidence 9986654 456666653 3578999999954 445565 4678999999997653
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=291.00 Aligned_cols=260 Identities=24% Similarity=0.293 Sum_probs=189.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-------------
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV------------- 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~------------- 72 (1021)
+...||+++||+|||||||+++|+. ...|..+.|+++|+|+......+.+..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g---------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 70 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTG---------------VWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRC 70 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHS---------------CCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhC---------------CccccCcccccCCcEEEecccccccccccccccccccccc
Confidence 4578999999999999999999951 134667788999999987765554421
Q ss_pred c--cC----ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhhcCC-CEEEEEeCcCCCCC
Q psy5021 73 N--KF----KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQKYKV-PKMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~--~~----~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~~~~-p~iiviNK~D~~~~ 144 (1021)
+ +. .+.++|||||||.+|...+.+++..+|++|+|+|+++|. +.||.+++..+...++ |+++++||+|+...
T Consensus 71 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 71 PNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp TTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCT
T ss_pred cccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCH
Confidence 0 11 278999999999999999999999999999999999997 8999999988887776 68899999999754
Q ss_pred CH-HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHH
Q psy5021 145 NY-NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEF 223 (1021)
Q Consensus 145 ~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~ 223 (1021)
+. ....+++++.+..
T Consensus 151 ~~~~~~~~~i~~~l~~---------------------------------------------------------------- 166 (408)
T 1s0u_A 151 KQAEENYEQIKEFVKG---------------------------------------------------------------- 166 (408)
T ss_dssp TTTTTHHHHHHHHHTT----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhh----------------------------------------------------------------
Confidence 31 1222222222110
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEE
Q psy5021 224 FLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVF 303 (1021)
Q Consensus 224 l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~ 303 (1021)
. ....+|++++||++|.|+++|+++|.+++|.|... .+.|+.++|.
T Consensus 167 ----------------------~-~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~-----------~~~~~~~~v~ 212 (408)
T 1s0u_A 167 ----------------------T-IAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRD-----------PDATPRMYVA 212 (408)
T ss_dssp ----------------------S-TTTTCCEEEC------CHHHHHHHHHHHSCCCCCC-----------TTSCCEEEEE
T ss_pred ----------------------c-CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccc-----------CCCCeEEEEE
Confidence 0 01236789999999999999999999999987543 4678999998
Q ss_pred EEeec--------CCCceEEEEEEEeeEEecCCEEEeCCCc------------eeeEeceEEEeecCCeeccccccCCCE
Q psy5021 304 KIFHD--------PFLGSLSFIRIYSGFIKVGDLVYNSTKK------------VKEKIFRILRMFANSKKDINDAHFGDI 363 (1021)
Q Consensus 304 k~~~~--------~~~g~~~~~RV~sG~l~~gd~v~~~~~~------------~~~~i~~i~~~~g~~~~~v~~a~aGdI 363 (1021)
.++.. +++|.++.+||++|+|++||.|...+.+ ...+|..|+.. ..++++|.|||.
T Consensus 213 ~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~ 288 (408)
T 1s0u_A 213 RSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG----NTILRKAHPGGL 288 (408)
T ss_dssp EEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET----TEEESEECSSSC
T ss_pred EEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEEC----CEEcCEEeCCCe
Confidence 88743 3478899999999999999999875432 24678877642 467999999999
Q ss_pred EEEec-----C--CccccCCeeccCC
Q psy5021 364 VVIVG-----L--KESSTGDTLCSLS 382 (1021)
Q Consensus 364 v~i~g-----l--~~~~~gdtl~~~~ 382 (1021)
+++.. + ++++.|++|+.+.
T Consensus 289 v~~~~~~~~~~~~~~~~~G~vl~~~~ 314 (408)
T 1s0u_A 289 IGVGTTLDPYLTKSDALTGSVVGLPG 314 (408)
T ss_dssp EEEECSSCGGGTGGGTTTTCEEESTT
T ss_pred EEEEeccCcccchhhccceeEEECCC
Confidence 99942 2 2477899999865
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=308.39 Aligned_cols=284 Identities=20% Similarity=0.220 Sum_probs=215.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc---------cccc----CCcccccChHHHhhhCceeeeeeeEEEeecc
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKI---------GEVH----HGTTITDWMQQEQERGITITSASVSIFWEVN 73 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~---------g~~~----~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~ 73 (1021)
...||+++||+|+|||||+++|++..+.+... .... ...+++|..+.|+++|+|+......+.+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~-- 243 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-- 243 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS--
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC--
Confidence 35689999999999999999999877665431 1111 12566788999999999999999988888
Q ss_pred cCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC
Q psy5021 74 KFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN 145 (1021)
Q Consensus 74 ~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~ 145 (1021)
++.++|||||||.+|...+..+++.+|++|+|||+++| ...|+.+++..+...++| +|+|+||+|+...+
T Consensus 244 --~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 --RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp --SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred --CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence 89999999999999999999999999999999999987 578999999999998977 88889999997533
Q ss_pred HHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHH
Q psy5021 146 YNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFL 225 (1021)
Q Consensus 146 ~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~ 225 (1021)
.. ..+++.+.+
T Consensus 322 ~~-~~~ei~~~l-------------------------------------------------------------------- 332 (611)
T 3izq_1 322 QQ-RFEEIKSKL-------------------------------------------------------------------- 332 (611)
T ss_dssp HH-HHHHHHHHH--------------------------------------------------------------------
T ss_pred HH-HHHHHHHHH--------------------------------------------------------------------
Confidence 21 111111110
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH---------------HHHHHHHhCCC-CccccccCCcc
Q psy5021 226 EKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF---------------LLNSICEYLPS-PYDVDFKNNDY 289 (1021)
Q Consensus 226 e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~---------------Ll~~i~~~lP~-p~~~~~~~~~~ 289 (1021)
...+.+.-.....+|++++||++|.|+.+ |++.|....+. |...+...
T Consensus 333 -------------~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~--- 396 (611)
T 3izq_1 333 -------------LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGIN--- 396 (611)
T ss_dssp -------------HHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCS---
T ss_pred -------------HHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccc---
Confidence 00000000011246899999999999974 44444333211 11000000
Q ss_pred ccccCCCceEEEEEEEeecC---CCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEee----cCCeeccccccCCC
Q psy5021 290 NINLNSNKFVSLVFKIFHDP---FLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMF----ANSKKDINDAHFGD 362 (1021)
Q Consensus 290 ~~~~~~~p~~~~V~k~~~~~---~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~----g~~~~~v~~a~aGd 362 (1021)
.+.|+...|..++..+ +.|+++.|||.+|+|++||.|...+.+...+|+.|.... |..+.++++|.|||
T Consensus 397 ----~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd 472 (611)
T 3izq_1 397 ----KDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGD 472 (611)
T ss_dssp ----CCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTC
T ss_pred ----cccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCC
Confidence 5689999999999877 479999999999999999999999999999999997652 55678999999999
Q ss_pred EEEE--ec--CCccccCCeeccCCc
Q psy5021 363 IVVI--VG--LKESSTGDTLCSLSE 383 (1021)
Q Consensus 363 Iv~i--~g--l~~~~~gdtl~~~~~ 383 (1021)
+|++ .| ..++..|++|+++..
T Consensus 473 ~v~l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 473 FVTLKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp EEEEEESSCCTTSCCTTCEEBCSTT
T ss_pred cceEEeeeccHhhCcceEEccCCCC
Confidence 9999 34 467999999998765
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=302.06 Aligned_cols=269 Identities=24% Similarity=0.355 Sum_probs=196.0
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccc------ccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIY------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
.-+.|++||++||||||..+|+...+.+. .+.....+++|..+.|++||+|+..+...++|+++.++|||||||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 45789999999999999999986544432 222223457899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc----
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY---- 800 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~---- 800 (1021)
.+|...+.++++.+|+||+||||.+|+..||+..|.++...++| .|+++||||....+ +....+++.+.+...
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad--~~~~~~~i~~~l~~~~~p~ 187 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATP-VMTFVNKMDREALH--PLDVMADIEQHLQIECAPM 187 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSCCCC--HHHHHHHHHHHHTSEEEES
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCc-eEEEEecccchhcc--hhHhhhhhhhhcCCceEeE
Confidence 99999999999999999999999999999999999999999999 78899999986521 223333333332100
Q ss_pred -------------------------------------------------------------------c--------cCCC
Q psy5021 801 -------------------------------------------------------------------D--------FDGE 805 (1021)
Q Consensus 801 -------------------------------------------------------------------~--------~~~~ 805 (1021)
+ ...+
T Consensus 188 ~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~ 267 (548)
T 3vqt_A 188 TWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGE 267 (548)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTS
T ss_pred EeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCC
Confidence 0 0122
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC---------CCCCCeeEEEEEEEee---CCceeEEEEE
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR---------ITDKPFLMPIEDVFSI---SGRGTVVTGK 873 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~---------~~~~p~~~~I~~~~~v---~g~G~Vv~G~ 873 (1021)
-+|+++.||+++. |+..||+.+.+++|.|.. +.+.||...|..++.. +..|.+..+|
T Consensus 268 ~~PV~~gSA~~~~-----------Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~R 336 (548)
T 3vqt_A 268 LTPVFFGSAINNF-----------GVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLR 336 (548)
T ss_dssp EEEEEECBGGGTB-----------SHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEE
T ss_pred cceeeecccccCc-----------CHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEE
Confidence 3678888998774 899999999999998853 2367898888888765 6789999999
Q ss_pred EEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 874 IERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 874 V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|.+|+|++||.|.....+ .+.+|..+... ..++++|.|||.|++. + ..+++.||+||+.+
T Consensus 337 V~sG~l~~g~~v~~~~~~--~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--g--l~~~~~GDTl~~~~ 400 (548)
T 3vqt_A 337 ICSGTFTRGMRLKHHRTG--KDVTVANATIFMAQDRTGVEEAFPGDIIGIP--N--HGTIKIGDTFTESK 400 (548)
T ss_dssp EEESCEETTCEEEETTTT--EEEECTTCEECCCSSCCSSCEECTTCEEEEE--C--SSCCCTTCEEESSS
T ss_pred EecceecCCCEEEeeccc--cccccchhhhhccccccccCEEecCCEEEec--C--CccCccCCEecCCC
Confidence 999999999999986433 34566665553 3589999999999875 3 56789999999764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=296.75 Aligned_cols=155 Identities=21% Similarity=0.285 Sum_probs=116.3
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC----------h
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG----------H 724 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG----------~ 724 (1021)
+++|.+++|||||+|+|++.... ..+...|+|.+.....++.++..+.|||||| +
T Consensus 199 ~ivG~~~vGKSslin~l~~~~~~---------------~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~ 263 (456)
T 4dcu_A 199 CLIGRPNVGKSSLVNAMLGEERV---------------IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETT 263 (456)
T ss_dssp EEECSTTSSHHHHHHHHHTSTTE---------------EECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCC
T ss_pred EEecCCCCCHHHHHHHHhCCCcc---------------ccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHH
Confidence 35567999999999999974321 1233457788888788888999999999999 6
Q ss_pred hhhHHH-HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccch-hhHHHHHHHHHHHhhhcccc
Q psy5021 725 ADYIKN-MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQD-KELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 725 ~~~~~~-~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~-~~~~~~~~~~~~~~l~~~~~ 802 (1021)
++|... +..++..+|++|+|+|++++...++.+++.++...++| +|+|+||+|+.+. ....++..+.+.+.+...++
T Consensus 264 e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 342 (456)
T 4dcu_A 264 EKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDY 342 (456)
T ss_dssp SHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTT
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhcCCCchHHHHHHHHHHHHhcccCCC
Confidence 777654 45678999999999999999999999999999999988 9999999999862 33455566666666655443
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++++||++|. |+++|++.+.+
T Consensus 343 ----~~~~~~SA~~g~-----------gv~~l~~~i~~ 365 (456)
T 4dcu_A 343 ----APILFMSALTKK-----------RIHTLMPAIIK 365 (456)
T ss_dssp ----SCEEECCTTTCT-----------TGGGHHHHHHH
T ss_pred ----CCEEEEcCCCCc-----------CHHHHHHHHHH
Confidence 689999999884 56666655544
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-31 Score=308.68 Aligned_cols=253 Identities=24% Similarity=0.262 Sum_probs=195.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+.++|+++||+|||||||+++|+...- .. ...+|+|++.....+.|. ++.++|||||
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v--------~~----------~e~~GIT~~i~~~~v~~~----~~~i~~iDTP 59 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKV--------AS----------GEAGGITQHIGAYHVETE----NGMITFLDTP 59 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHH--------SB----------TTBCCCCCCSSCCCCCTT----SSCCCEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCC--------cc----------ccCCCeeEeEEEEEEEEC----CEEEEEEECC
Confidence 4678999999999999999999974321 10 123688888777666666 7789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeee
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 165 (1021)
||.+|...+.++++.+|++|+|+|+++|+.+||.++|..+...++|+++++||+|++.++.+++.. .+..
T Consensus 60 Ghe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~----~l~~------ 129 (501)
T 1zo1_I 60 GHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKN----ELSQ------ 129 (501)
T ss_dssp TTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTC----CCCC------
T ss_pred CcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHH----HHHH------
Confidence 999999999999999999999999999999999999999999999999999999997654321100 0000
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
. .+..++
T Consensus 130 ------------------------------------------------------~-----------~~~~~~-------- 136 (501)
T 1zo1_I 130 ------------------------------------------------------Y-----------GILPEE-------- 136 (501)
T ss_dssp ------------------------------------------------------C-----------CCCTTC--------
T ss_pred ------------------------------------------------------h-----------hhhHHH--------
Confidence 0 000000
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCC--CCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeE
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLP--SPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP--~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~ 323 (1021)
.+..+|++++||++|.|+++|+++|..... .+... ++.|+.++|++++.+++.|.++++||++|+
T Consensus 137 --~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~~~~~-----------~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gt 203 (501)
T 1zo1_I 137 --WGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAV-----------RKGMASGAVIESFLDKGRGPVATVLVREGT 203 (501)
T ss_dssp --CSSSCEEEECCTTTCTTCTTHHHHTTTTCCCSTTTSC-----------CCSBCEEEEEEEEECSSSSEEEEEEEEESB
T ss_pred --hCCCccEEEEeeeeccCcchhhhhhhhhhhhhccccc-----------cccccccceEEEEEeCCcEEEEEEEEEeeE
Confidence 012378999999999999999999976432 11111 567899999999999999999999999999
Q ss_pred EecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcc-ccCCeeccC
Q psy5021 324 IKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKES-STGDTLCSL 381 (1021)
Q Consensus 324 l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~gdtl~~~ 381 (1021)
|+.||.+.+.+. ..++..+......++++|.||+.+.+.|+++. ..||+++..
T Consensus 204 lk~Gd~v~~g~~-----~~kVr~i~~~~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~ 257 (501)
T 1zo1_I 204 LHKGDIVLCGFE-----YGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVV 257 (501)
T ss_dssp CCTTCEEEEEBS-----SCEEEEECCTTTTSEEEECCSSCSSSEEECSCCCTTEEEEEE
T ss_pred EecCCEEEEccc-----eeEEEEEEecCCCcCcEeccCCcEEEeCCCCCCCCCCEEEec
Confidence 999999987442 23344444444467899999999999999884 789999753
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-30 Score=299.95 Aligned_cols=257 Identities=26% Similarity=0.333 Sum_probs=192.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+-.||+++||+|||||||+++|+... ....+|..+.|+++|+|++.....+.+. ++.++||||||
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~-----------~~~~~d~~~~e~~~GiTi~~~~~~~~~~----~~~i~iiDtPG 82 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA-----------STSAHDKLPESQKRGITIDIGFSAFKLE----NYRITLVDAPG 82 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC-------------------------------CCCEEEET----TEEEEECCCSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC-----------cccccccccccccCccEEecceEEEEEC----CEEEEEEECCC
Confidence 35789999999999999999996321 1245788889999999999998888887 89999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCC-HHHHHHHHHHHhCCceeeee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGAN-YNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~ 165 (1021)
|.+|...+.++++.+|++|+|+|+++|++.|+.+++..+...++|.++|+||+|+...+ ++...+++++.+
T Consensus 83 h~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l-------- 154 (482)
T 1wb1_A 83 HADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSIL-------- 154 (482)
T ss_dssp HHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHH--------
Confidence 99999999999999999999999999999999999999999999999999999996421 111122221111
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
...
T Consensus 155 -----------------------------------------------------------------------------~~~ 157 (482)
T 1wb1_A 155 -----------------------------------------------------------------------------QST 157 (482)
T ss_dssp -----------------------------------------------------------------------------HHS
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 000
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCCCC--ccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeE
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP--YDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p--~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~ 323 (1021)
..-...|++++||++|.|+++|+++|.+.+|.| ... .++|+.+.|..++..++.|.++.+||.+|+
T Consensus 158 -~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~~-----------~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~ 225 (482)
T 1wb1_A 158 -HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRN-----------TESYFKMPLDHAFPIKGAGTVVTGTINKGI 225 (482)
T ss_dssp -SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCCC-----------SSSCCBCBCSCEECCSSCCCEECCCCCBSC
T ss_pred -cccccceEEEEECcCCCCHHHHHHHHHHhhcCcccccc-----------ccccccccceeEEEecCCceEEEEEEEEeE
Confidence 000135789999999999999999999988755 221 456888888888888999999999999999
Q ss_pred EecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe--cCC--ccccCCeec
Q psy5021 324 IKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV--GLK--ESSTGDTLC 379 (1021)
Q Consensus 324 l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl~--~~~~gdtl~ 379 (1021)
+++||.|...+.+...+|..|.. + ..++++|.|||.+++. |++ ++..||+|+
T Consensus 226 l~~gd~v~~~p~~~~~~V~~i~~-~---~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 226 VKVGDELKVLPINMSTKVRSIQY-F---KESVMEAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp CCSSEEECCTTTCCCEEECCBCG-G---GSCBCCCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred EeeCCEEEECCCCcEEEEeEEEE-C---CeEeeEecCCCEEEEEecCCCHhhccccceEe
Confidence 99999999988887888888853 2 3578999999999884 754 478999994
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=278.90 Aligned_cols=155 Identities=23% Similarity=0.271 Sum_probs=106.1
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH----
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN---- 730 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~---- 730 (1021)
+++|.+|+|||||+|+|++..... .....|+|.+.....+..++..+.+|||||+.++...
T Consensus 184 aivG~~gvGKSTLln~l~g~~~~~---------------v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~ 248 (439)
T 1mky_A 184 AIVGRPNVGKSTLFNAILNKERAL---------------VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRT 248 (439)
T ss_dssp EEECSTTSSHHHHHHHHHTSTTEE---------------ECCCC------CCEEEEETTEEEEESSCSCC----------
T ss_pred EEECCCCCCHHHHHHHHhCCcccc---------------cCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhh
Confidence 566779999999999999854221 1233477877777778888999999999998654322
Q ss_pred --------HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhh-HHHHHHHHHHHhhhccc
Q psy5021 731 --------MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKE-LLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 731 --------~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~-~~~~~~~~~~~~l~~~~ 801 (1021)
...++..+|++++|+|++++...+....+..+...+.| +++|+||+|+.+... ..++..+++.+.+...+
T Consensus 249 ~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 327 (439)
T 1mky_A 249 VEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA-SVVVFNKWDLVVHREKRYDEFTKLFREKLYFID 327 (439)
T ss_dssp -CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCCchhhHHHHHHHHHHHHhccCC
Confidence 24567889999999999998888877777777788988 999999999976322 23444444444443333
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+++++||++|. ++++|++.+.+
T Consensus 328 ----~~~~~~~SA~~g~-----------gv~~l~~~i~~ 351 (439)
T 1mky_A 328 ----YSPLIFTSADKGW-----------NIDRMIDAMNL 351 (439)
T ss_dssp ----TSCEEECBTTTTB-----------SHHHHHHHHHH
T ss_pred ----CCcEEEEECCCCC-----------CHHHHHHHHHH
Confidence 2579999999884 67777776654
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=282.10 Aligned_cols=273 Identities=26% Similarity=0.287 Sum_probs=195.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDT 84 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDt 84 (1021)
....||+++||+|||||||+++|+...... ..|.. ..+.......+..++++.........+.. ....+.++||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYA--ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEE--EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCcc--ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 445799999999999999999997422111 00100 01111112222344444433222111110 111378999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhhcCC-CEEEEEeCcCCCCCC-HHHHHHHHHHHhCCce
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQKYKV-PKMIFVNKMDRIGAN-YNNCIIDIKKKFNCIV 161 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~~~~-p~iiviNK~D~~~~~-~~~~~~~i~~~l~~~~ 161 (1021)
|||.+|...+..+++.+|++|+|+|++++. ..|+.+++..+...+. |+++|+||+|+...+ ..+..+++.+.+..
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~-- 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG-- 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT--
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999997 9999999998887775 899999999986432 11122222221100
Q ss_pred eeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHH
Q psy5021 162 LPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNS 241 (1021)
Q Consensus 162 ~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~ 241 (1021)
T Consensus 161 -------------------------------------------------------------------------------- 160 (403)
T 3sjy_A 161 -------------------------------------------------------------------------------- 160 (403)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEee--------cCCCce
Q psy5021 242 IRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFH--------DPFLGS 313 (1021)
Q Consensus 242 ~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~--------~~~~g~ 313 (1021)
.....+|++++||++|.|+++|+++|.+++|.|... .+.|+.++|.+++. ++++|.
T Consensus 161 -----~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~-----------~~~~~~~~v~~~~~v~~~~~~~~~~~G~ 224 (403)
T 3sjy_A 161 -----TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRD-----------LSQKPVMLVIRSFDVNKPGTQFNELKGG 224 (403)
T ss_dssp -----STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC-----------TTSCCEEEEEEEECCCCTTCCSSSCCCC
T ss_pred -----hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCC-----------CCCCcEEEEEEEEeecCCCcccccCcCc
Confidence 001236899999999999999999999999988653 56899999998875 445899
Q ss_pred EEEEEEEeeEEecCCEEEeCCCce------------eeEeceEEEeecCCeeccccccCCCEEEEe-----cC--Ccccc
Q psy5021 314 LSFIRIYSGFIKVGDLVYNSTKKV------------KEKIFRILRMFANSKKDINDAHFGDIVVIV-----GL--KESST 374 (1021)
Q Consensus 314 ~~~~RV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-----gl--~~~~~ 374 (1021)
++++||++|+++.||.|.+.+.++ ..+|..|.. ...++++|.|||++++. ++ +++..
T Consensus 225 v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~ 300 (403)
T 3sjy_A 225 VIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF----GDEEFKEAKPGGLVAIGTYLDPSLTKADNLL 300 (403)
T ss_dssp EEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEEEEESSCHHHHGGGTTT
T ss_pred EEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEE----CCEEcCEEeCCCEEEEEeccccccchhhhcc
Confidence 999999999999999999865543 457777765 35689999999999983 22 35778
Q ss_pred CCeeccCCc
Q psy5021 375 GDTLCSLSE 383 (1021)
Q Consensus 375 gdtl~~~~~ 383 (1021)
|++|+.++.
T Consensus 301 G~vl~~~~~ 309 (403)
T 3sjy_A 301 GSIITLADA 309 (403)
T ss_dssp TCEEEETTC
T ss_pred ccEEeCCCC
Confidence 999998653
|
| >3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=252.36 Aligned_cols=164 Identities=24% Similarity=0.344 Sum_probs=147.6
Q ss_pred CCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccC
Q psy5021 849 TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREE 928 (1021)
Q Consensus 849 ~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~ 928 (1021)
.++||||+|+++|+ |.|+|++|+|++|++++||+|.+.|++ .+++|+||+++++++++|.|||+|+|+|++++..+
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~--~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~d 78 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK--HNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEE 78 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTT--EEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSC
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCC--CEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHH
Confidence 57899999999998 899999999999999999999999875 56899999999999999999999999999999999
Q ss_pred cccceEEeeCCC-ccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeec-c------------CCCccccc
Q psy5021 929 VERGQVLAKIGS-IKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICK-L------------PENVEMVL 994 (1021)
Q Consensus 929 i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~-~------------~~~~~~l~ 994 (1021)
+++|||||+++. |..+++|+|++.||+++ .+|..||++++|+|+.+++|++. + ...+++|+
T Consensus 79 i~rG~vl~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~ 153 (204)
T 3e1y_E 79 ILPGFILCDPNNLCHSGRTFDAQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVK 153 (204)
T ss_dssp CCTTCEEBCSSSCCCCCSEEEEEEECCSCC-----SCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCC
T ss_pred CccceEEECCCCCCchhEEEEEEEEEeCCC-----CccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcC
Confidence 999999999875 57899999999999986 48999999999999999998764 2 12357899
Q ss_pred CCCeEEEEEEEceeeecccC------CeEEEeC
Q psy5021 995 PGDNIKLNVTLLSSIAIEIG------LRFAIRE 1021 (1021)
Q Consensus 995 ~g~~~~v~~~~~~pi~~~~~------~rf~lr~ 1021 (1021)
+||.|.|+|++.+|+|++.| +||+|||
T Consensus 154 ~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd 186 (204)
T 3e1y_E 154 QDQVCIARLRTAGTICLETFKDFPQMGRFTLRD 186 (204)
T ss_dssp TTCEEEEEEEESSCCCCCCTTSSGGGTEEEEEC
T ss_pred CCCEEEEEEEECCeEEEEEcccCcCCCCEEEEE
Confidence 99999999999999999998 8999997
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-30 Score=299.13 Aligned_cols=258 Identities=19% Similarity=0.224 Sum_probs=199.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+...|+++||+|||||||+++|...... .+..+|+|.+.....+.+. .+..++||||||
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~------------------~~~~~giT~~i~~~~v~~~---~g~~i~~iDTPG 61 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA------------------AMEAGGITQHIGAFLVSLP---SGEKITFLDTPG 61 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH------------------HSSSCCBCCCTTSCCBCSS---CSSCCBCEECSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc------------------cccCCceeEEEeEEEEEeC---CCCEEEEEECCC
Confidence 4567999999999999999999743211 1123466666655555542 156899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF 166 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 166 (1021)
|.+|...+.++++.+|++|+|+|+++|+.+|+.++|..+...++|+++++||+|++.++......++.+. +..
T Consensus 62 he~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~~------ 134 (537)
T 3izy_P 62 HAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY-DVV------ 134 (537)
T ss_dssp SCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT-TSC------
T ss_pred hHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh-hhh------
Confidence 9999999999999999999999999999999999999999999999999999999765432211111110 000
Q ss_pred ecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy5021 167 NIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLV 246 (1021)
Q Consensus 167 p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~ 246 (1021)
.+
T Consensus 135 --------------------------------------------------------------------~e---------- 136 (537)
T 3izy_P 135 --------------------------------------------------------------------CE---------- 136 (537)
T ss_dssp --------------------------------------------------------------------CC----------
T ss_pred --------------------------------------------------------------------HH----------
Confidence 00
Q ss_pred hcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEec
Q psy5021 247 LKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKV 326 (1021)
Q Consensus 247 ~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~ 326 (1021)
..+..+|++++||++|.|+++|+++|...++.+..... ++.|+.+.|++++.+++.|+++.++|.+|+|++
T Consensus 137 ~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~---------~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~ 207 (537)
T 3izy_P 137 DYGGDVQAVHVSALTGENMMALAEATIALAEMLELKAD---------PTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRK 207 (537)
T ss_dssp CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCC---------SSSSEEEEEEEECCCTTCCCCEEEEEEEECCSS
T ss_pred hcCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCC---------CCCCcceeEEEEEEeCCCceEEEEEEecCEEEc
Confidence 00124689999999999999999999988764422111 578999999999999999999999999999999
Q ss_pred CCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcc-ccCCeeccCCcc
Q psy5021 327 GDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKES-STGDTLCSLSEN 384 (1021)
Q Consensus 327 gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~gdtl~~~~~~ 384 (1021)
||.+.... ...+|..++...| .++++|.||++|+|.|+++. ..||+|+.....
T Consensus 208 Gd~v~~g~--~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 208 GSILVAGK--SWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp EEEECCSS--CCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred CCEEEeCC--ceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 99986432 3356666654433 67999999999999999985 899999986544
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-28 Score=284.56 Aligned_cols=269 Identities=25% Similarity=0.335 Sum_probs=209.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc------cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG------GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
..+++++|++|+|||||+++|+.....+.. +........|....|+++|+|+......+.+.+..++|||||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 458899999999999999999744332211 11111234577788999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc----
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY---- 800 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~---- 800 (1021)
.+|...+..+++.+|++|+|+|++++...|+..+|..+...++| +|+|+||+|+.... .....+++.+.+...
T Consensus 93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~--~~~~l~ei~~~l~~~~~~~ 169 (528)
T 3tr5_A 93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP-IMTFINKMDRDTRP--SIELLDEIESILRIHCAPV 169 (528)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCC-EEEEEECTTSCCSC--HHHHHHHHHHHHCCEEEES
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCcccc--HHHHHHHHHHhhCCCceee
Confidence 99999999999999999999999999999999999999999999 88999999997521 111222332222110
Q ss_pred ----c-----------------------------------------------------------------------cCCC
Q psy5021 801 ----D-----------------------------------------------------------------------FDGE 805 (1021)
Q Consensus 801 ----~-----------------------------------------------------------------------~~~~ 805 (1021)
+ ....
T Consensus 170 ~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 249 (528)
T 3tr5_A 170 TWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGE 249 (528)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTS
T ss_pred ecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCc
Confidence 0 0112
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC---------CCCCeeEEEEEEEe--eC-CceeEEEEE
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI---------TDKPFLMPIEDVFS--IS-GRGTVVTGK 873 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~---------~~~p~~~~I~~~~~--v~-g~G~Vv~G~ 873 (1021)
.+|++++||++|. |++.|++++.+++|.|... .+.||...|.++.. .+ +.|+++.++
T Consensus 250 ~~PV~~gSA~~~~-----------GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~R 318 (528)
T 3tr5_A 250 LTPIFFGSAINNF-----------GVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLR 318 (528)
T ss_dssp EEEEEECBGGGTB-----------SHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEE
T ss_pred eeEEEeccccCCc-----------cHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEE
Confidence 3488999999884 8999999999999877532 25789998988874 55 889999999
Q ss_pred EEEEEeeCCCEEEEeecCCeeEEEEEEEEe----cccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 874 IERGIVKNGEEIEIVGYKQTIKTTITGIEM----FKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 874 V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~----~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|.+|++++||.|...+.++ +.+|.++.. .+.++++|.|||++++. + ..+++.||+||+..
T Consensus 319 V~sG~l~~g~~v~~~~~~~--~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~--~--l~~~~~GDtl~~~~ 382 (528)
T 3tr5_A 319 IASGQYQKGMKAYHVRLKK--EIQINNALTFMAGKRENAEEAWPGDIIGLH--N--HGTIQIGDTFTQGE 382 (528)
T ss_dssp EEESCEETTEEEEETTTTE--EEEESSCBCCBTTCSSCCSEECTTCEEEEE--E--SSSCCTTCEEESSC
T ss_pred EecCeEcCCCEEEecCCCc--eEEEeeeEEEeCCCeeECCEECCCCEEEEc--C--CCCCccCCEEcCCC
Confidence 9999999999999986553 467888776 35689999999998774 2 45688999999743
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-28 Score=283.50 Aligned_cols=270 Identities=23% Similarity=0.326 Sum_probs=193.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc------cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG------GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG 723 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG 723 (1021)
+..+++++|++++|||||+++|+.....+.. +.....+++|..+.|+++|+|+......+++.+..++||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 3568899999999999999999974333211 1111234568888999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc----
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE---- 799 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~---- 799 (1021)
|.+|...+..+++.+|++|+|+|++++...|+++++..+...++| +++++||+|+..... ....+++.+.+..
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~--~~~~~~i~~~l~~~~~~ 168 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP--MELLDEVENELKIGCAP 168 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH--HHHHHHHHHHHCCEEEE
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH--HHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999989999 899999999975221 1222333332210
Q ss_pred ------------------------c----cc------------------------------------------------C
Q psy5021 800 ------------------------Y----DF------------------------------------------------D 803 (1021)
Q Consensus 800 ------------------------~----~~------------------------------------------------~ 803 (1021)
+ |. .
T Consensus 169 ~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 248 (529)
T 2h5e_A 169 ITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLA 248 (529)
T ss_dssp SEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHT
T ss_pred eecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHh
Confidence 0 00 1
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC---------CCCCeeEEEEEEEe---eCCceeEEE
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI---------TDKPFLMPIEDVFS---ISGRGTVVT 871 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~---------~~~p~~~~I~~~~~---v~g~G~Vv~ 871 (1021)
...+|+++.||+++ .|++.||++|.+++|+|... .+.||...|..+.. .++.|+++.
T Consensus 249 ~~~~Pv~~gSA~~~-----------~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~ 317 (529)
T 2h5e_A 249 GEITPVFFGTALGN-----------FGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAF 317 (529)
T ss_dssp TSEEEEEECBTTTT-----------BSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEE
T ss_pred CceeEEEeeecccC-----------CCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEE
Confidence 12347777888766 38999999999999877532 14678777766643 345899999
Q ss_pred EEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 872 GKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 872 G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|+|.+|++++||+|.+.+.++ +.+|.+|... +.++++|.|||+|++. + ..+++.||+||+.+
T Consensus 318 ~RV~sG~l~~g~~v~~~~~~~--~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~--~--l~~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 318 MRVVSGKYEKGMKLRQVRTAK--DVVISDALTFMAGDRSHVEEAYPGDILGLH--N--HGTIQIGDTFTQGE 383 (529)
T ss_dssp EEEEESCEETTCEEEETTTTE--EEECSCEECCCC-----CCEECTTCEEEEC--C--SSCCCTTCEEESSC
T ss_pred EEEecCeEcCCCEEEEeeCCC--EEEeceeeEEeCCCceEcceECCCCEEEEe--c--cCCCccCCEeecCC
Confidence 999999999999999987554 5789999875 5689999999998775 3 56788999999754
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-30 Score=299.62 Aligned_cols=255 Identities=27% Similarity=0.304 Sum_probs=199.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCChhhhH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~~~~~ 728 (1021)
|...++++|++|||||||+++|++... ......|+|.+.....+.. .+..++|||||||++|.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~----------------~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV----------------AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH----------------HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----------------ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH
Confidence 456789999999999999999997431 1223457788777776666 46789999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
.++..+++.+|++|||+|++++.++|+.+++..+...++| +|||+||+|+.+... +....++..+..........++
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~--~~v~~~l~~~~~~~e~~~~~~~ 143 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKAEADP--EKVKKELLAYDVVCEDYGGDVQ 143 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSC--CSSSSHHHHTTSCCCCSSSSEE
T ss_pred HHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEecccccccch--HHHHHHHHhhhhhHHhcCCCce
Confidence 9999999999999999999999999999999999999999 999999999975211 1111222222111111122478
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhccC--CCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEE
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI--PTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l--~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~ 886 (1021)
++++||++|. |+++|+++|...+ +.+....+.|++++|.+++..+|.|+|++|+|.+|+|++||.+.
T Consensus 144 iv~vSAktG~-----------GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~ 212 (537)
T 3izy_P 144 AVHVSALTGE-----------NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILV 212 (537)
T ss_dssp ECCCCSSSSC-----------SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEEC
T ss_pred EEEEECCCCC-----------CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEE
Confidence 9999999884 7888888887643 23444567899999999999999999999999999999999874
Q ss_pred EeecCCeeEEEEEEEEecc-cccceeccCceEEEEecccCccCcccceEEeeCCCc
Q psy5021 887 IVGYKQTIKTTITGIEMFK-KTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSI 941 (1021)
Q Consensus 887 i~p~~~~~~~~Vksi~~~~-~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~ 941 (1021)
.. .. .++|++|+.++ .++++|.||+.|++. +++ ....+||+++..++.
T Consensus 213 ~g--~~--~~kVr~i~~~~g~~v~~A~~G~~V~i~--g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 213 AG--KS--WAKVRLMFDENGRAVNEAYPSMPVGII--GWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp CS--SC--CEEEEEEEECCCCCSCCSCCSTTCCCC--SSE-EEEEEESSCCSCCSS
T ss_pred eC--Cc--eEEEEEEEcCCCCCCcEEcCCCEEEEE--CCC-CCCCCCCEEEecCCh
Confidence 32 22 37899999986 699999999999775 443 335899999976544
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=282.61 Aligned_cols=270 Identities=25% Similarity=0.348 Sum_probs=213.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc-ccc-ccccccCCchhhhhcCceEeeeEEEEeeCC-------eEEEEEe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-RAFDTIDNAPEEKERGITISTSHVEYESEN-------KHYAHVD 720 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-------~~i~liD 720 (1021)
+...++++||.+||||||+++|+.....+.. +.. ...+++|..+.|+++|+|+......+.+.+ ..++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 3467899999999999999999764322211 111 123467889999999999999888888776 8999999
Q ss_pred cCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 721 CPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 721 tpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
||||.+|...+..+++.+|++|+|||++++...|+.++|..+...++| +++++||+|+.... ++.+.+++++.+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~~~~~--~~~~~~~l~~~l~~~ 165 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDRMGAN--FLKVVNQIKTRLGAN 165 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCccccc--HHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999 88899999987521 333334444332210
Q ss_pred --------------------------cc----------------------------------------------------
Q psy5021 801 --------------------------DF---------------------------------------------------- 802 (1021)
Q Consensus 801 --------------------------~~---------------------------------------------------- 802 (1021)
-|
T Consensus 166 ~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~ 245 (704)
T 2rdo_7 166 PVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 245 (704)
T ss_pred ceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Confidence 00
Q ss_pred ------------CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC--------------------CC
Q psy5021 803 ------------DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI--------------------TD 850 (1021)
Q Consensus 803 ------------~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~--------------------~~ 850 (1021)
....+|+++.||+++. |++.||+.+.+++|+|... .+
T Consensus 246 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~-----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (704)
T 2rdo_7 246 AEIKGALRQRVLNNEIILVTCGSAFKNK-----------GVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDD 314 (704)
T ss_pred HHHHHHHHHHHHhCCeeEEEEeecccCc-----------cHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCC
Confidence 0112577888888763 7899999999999887531 46
Q ss_pred CCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCc
Q psy5021 851 KPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKR 926 (1021)
Q Consensus 851 ~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~ 926 (1021)
.||.+.|.+++..++.|.++.|||.+|+|++||+|+..+.++ +.+|.+|... ..++++|.|||.|++. + .
T Consensus 315 ~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--g--l 388 (704)
T 2rdo_7 315 EPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAA--RERFGRIVQMHANKREEIKEVRAGDIAAAI--G--L 388 (704)
T ss_pred CceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCc--EEEeceEEEEeCCCceEcceeCCCCEEEEe--C--c
Confidence 799999999999999999999999999999999999876443 4577777754 4589999999999986 4 4
Q ss_pred cCcccceEEeeCC
Q psy5021 927 EEVERGQVLAKIG 939 (1021)
Q Consensus 927 ~~i~~G~vl~~~~ 939 (1021)
++++.||+||+.+
T Consensus 389 ~~~~~GdTl~~~~ 401 (704)
T 2rdo_7 389 KDVTTGDTLCDPD 401 (704)
T ss_pred ccCccCCEEeCCC
Confidence 5679999999754
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-30 Score=307.80 Aligned_cols=266 Identities=26% Similarity=0.343 Sum_probs=210.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccc-cc-cccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYG-GE-VRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~-~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
-.+|++||++||||||..+|+...+.+.. +. -...+++|..+.|++||+|+..+...++|+++.++|||||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 46799999999999999999865544432 11 12345789999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc----------
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE---------- 799 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~---------- 799 (1021)
++.++++.+|+||+||||.+|+..||+.+|.++...++| .|+++||||....+ +....+++.+.+..
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~--~~~~~~~i~~~l~~~~~~~~~~~~ 159 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP-TIFFINKIDQNGID--LSTVYQDIKEKLSAEIVIKQKVEL 159 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCS-CEECCEECCSSSCC--SHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-eEEEEeccccccCC--HHHHHHHHHHHhCCCccccceeEe
Confidence 999999999999999999999999999999999999999 67789999986521 11122222222110
Q ss_pred --------------------------------cc--------------cCCCceEEEEecccccccCCCCCccCcchHHH
Q psy5021 800 --------------------------------YD--------------FDGENTKIVIGSALLALEGKDDNQLGTTSIKK 833 (1021)
Q Consensus 800 --------------------------------~~--------------~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~ 833 (1021)
-. ....-.|+++.||+++. |++.
T Consensus 160 ~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~-----------Gv~~ 228 (638)
T 3j25_A 160 YPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNI-----------GIDN 228 (638)
T ss_dssp CGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCC-----------SHHH
T ss_pred eccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCC-----------Cchh
Confidence 00 00112567778888763 8999
Q ss_pred HHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccc
Q psy5021 834 LLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLD 909 (1021)
Q Consensus 834 Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~ 909 (1021)
||+.+.+.+|.|....+.|+...|.+++..++.|.++.+||.+|+|++||.|.+...++ .+|..+... ..+++
T Consensus 229 LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~---~~v~~l~~~~g~~~~~v~ 305 (638)
T 3j25_A 229 LIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEK---IKVTEMYTSINGELCKID 305 (638)
T ss_dssp HHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCC---SSBCCCCSSCCCCBSCCC
T ss_pred HhhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCcc---eeEEeeeccccccccccc
Confidence 99999999998887778899999999999999999999999999999999998764332 234444432 34789
Q ss_pred eeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 910 EGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 910 ~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
+|.|||.|++.. ..++.|+++++..
T Consensus 306 ~a~aGdIv~i~g-----~~~~~~~tl~d~~ 330 (638)
T 3j25_A 306 RAYSGEIVILQN-----EFLKLNSVLGDTK 330 (638)
T ss_dssp TTBCCCCSCCCS-----SSCSSEECSSSSS
T ss_pred ccccceEEEEec-----cccccCceecCCC
Confidence 999999986542 4567788888654
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-29 Score=286.78 Aligned_cols=249 Identities=27% Similarity=0.325 Sum_probs=197.4
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
|...++++||++||||||+++|++.... ....+|+|++.....+++++..++|||||||++|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~----------------~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA----------------SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS----------------BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc----------------cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH
Confidence 5678899999999999999999863211 122368888888777888888999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC----CC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD----GE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~----~~ 805 (1021)
++..++..+|++|||+|+++|.++||.+++..+...++| +|+++||+|+.+... + ++...+...++. ..
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~--~----~v~~~l~~~~~~~~~~~~ 139 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADP--D----RVKNELSQYGILPEEWGG 139 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCC--C----CTTCCCCCCCCCTTCCSS
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEeccccccCH--H----HHHHHHHHhhhhHHHhCC
Confidence 999999999999999999999999999999999999999 999999999975211 0 111112111211 12
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC--CCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI--PTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGE 883 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l--~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd 883 (1021)
.++++++||++|. |+++|+++|.... ..+....+.|++.+|.+++..+|.|++++|+|.+|++++||
T Consensus 140 ~~~~v~vSAktG~-----------gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd 208 (501)
T 1zo1_I 140 ESQFVHVSAKAGT-----------GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGD 208 (501)
T ss_dssp SCEEEECCTTTCT-----------TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTC
T ss_pred CccEEEEeeeecc-----------CcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCC
Confidence 4789999999884 7888999987532 23344557889999999999999999999999999999999
Q ss_pred EEEEeecCCeeEEEEEEEEec-ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 884 EIEIVGYKQTIKTTITGIEMF-KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 884 ~v~i~p~~~~~~~~Vksi~~~-~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
.+.+.+. .++|++|+.. +..+++|.||+.|++. +++ .....|++++...
T Consensus 209 ~v~~g~~----~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~-~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 209 IVLCGFE----YGRVRAMRNELGQEVLEAGPSIPVEIL--GLS-GVPAAGDEVTVVR 258 (501)
T ss_dssp EEEEEBS----SCEEEEECCTTTTSEEEECCSSCSSSE--EEC-SCCCTTEEEEEEC
T ss_pred EEEEccc----eeEEEEEEecCCCcCcEeccCCcEEEe--CCC-CCCCCCCEEEecC
Confidence 9988652 2589999864 5699999999998765 332 2247899998543
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=289.39 Aligned_cols=268 Identities=25% Similarity=0.340 Sum_probs=190.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccc-cc-cccccccCCchhhhhcCceEeeeEEEEeeC-------CeEEEEEecC
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYG-GE-VRAFDTIDNAPEEKERGITISTSHVEYESE-------NKHYAHVDCP 722 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~-~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-------~~~i~liDtp 722 (1021)
-+.|++||.+||||||..+|+.....+.. +. ....+++|..+.|++||+|+..+..++.|. ++.++|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 36899999999999999999865543321 11 123457899999999999999999888764 5789999999
Q ss_pred ChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc--
Q psy5021 723 GHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY-- 800 (1021)
Q Consensus 723 G~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~-- 800 (1021)
||.+|...+.++++.+|+||+||||.+|+..||+..|.++...++| .|+++||||....+ +....+++...+...
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp-~i~~iNKiDr~~a~--~~~~~~ei~~~l~~~~~ 170 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVP-RIVYVNKMDRQGAN--FLRVVEQIKKRLGHTPV 170 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCC-EEEEEECSSSTTCC--HHHHHHHHHHHHCSCEE
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEccccccCcc--HHHHHHHhhhhccccee
Confidence 9999999999999999999999999999999999999999999999 78899999986421 222223333222110
Q ss_pred --------------------------------------------------------------------------------
Q psy5021 801 -------------------------------------------------------------------------------- 800 (1021)
Q Consensus 801 -------------------------------------------------------------------------------- 800 (1021)
T Consensus 171 ~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~ 250 (709)
T 4fn5_A 171 PVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAE 250 (709)
T ss_dssp ESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHH
T ss_pred eeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHH
Confidence
Q ss_pred --------ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC--------------------CCCCC
Q psy5021 801 --------DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR--------------------ITDKP 852 (1021)
Q Consensus 801 --------~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~--------------------~~~~p 852 (1021)
-...+-.|.+..||+++ .+++.||+.+.+++|.|.. ..+.|
T Consensus 251 ~~~~l~~~~~~~~~~pv~~gsa~~~-----------~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~p 319 (709)
T 4fn5_A 251 IKEGLRLRTLACEIVPAVCGSSFKN-----------KGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEP 319 (709)
T ss_dssp HHHHHHHHHHTTSCEEEEECBTTTT-----------BTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSC
T ss_pred HHHHHHHhhhhceeeeeeeeecccC-----------CchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCc
Confidence 00112245666677765 3788999999999998742 34679
Q ss_pred eeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccC
Q psy5021 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREE 928 (1021)
Q Consensus 853 ~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~ 928 (1021)
+.+.|..+...+..|.+..|||.+|+|++||+|.....++. .+|..+... ..++++|.||+.|++. ++ .+
T Consensus 320 l~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~--~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--Gl--~~ 393 (709)
T 4fn5_A 320 FSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKK--ERVGRMVQMHANQREEIKEVRAGDIAALI--GM--KD 393 (709)
T ss_dssp CEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCC--CBCCCEECCCSSCCCEESEECTTCEEEEC--SC--SS
T ss_pred ceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcE--EeecceeEeecceeeEeeeecCCCeeeec--CC--Cc
Confidence 99999999999999999999999999999999986533332 344444433 3589999999998764 43 56
Q ss_pred cccceEEeeCC
Q psy5021 929 VERGQVLAKIG 939 (1021)
Q Consensus 929 i~~G~vl~~~~ 939 (1021)
+..|++||+.+
T Consensus 394 ~~~gdTl~~~~ 404 (709)
T 4fn5_A 394 VTTGDTLCSIE 404 (709)
T ss_dssp CCTTCEEECSS
T ss_pred CccCCEecCCC
Confidence 89999999755
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-27 Score=279.39 Aligned_cols=260 Identities=28% Similarity=0.335 Sum_probs=192.7
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee----------------
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES---------------- 711 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~---------------- 711 (1021)
.+|...++++||+|||||||+++|++.... +. ..+|+|.+.....+.+
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~------------~~----e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v 65 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVA------------SR----EAGGITQHIGATEIPMDVIEGICGDFLKKFSI 65 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHS------------CC--------CCCBTTEEEEEHHHHHHHSCGGGGGCGG
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhcccCc------------cc----cCCceecccCeEEEeechhhhhcccccccccc
Confidence 357788999999999999999999864311 00 0123443333222221
Q ss_pred --CCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccch-h-----
Q psy5021 712 --ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQD-K----- 783 (1021)
Q Consensus 712 --~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~-~----- 783 (1021)
....++|||||||++|...+..+++.+|++|+|+|+++|...||.++|.++...++| +|+++||+|+.+. .
T Consensus 66 ~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~~~~ 144 (594)
T 1g7s_A 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVHEGR 144 (594)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCCTTC
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEecccccccccccccCC
Confidence 123599999999999998888888999999999999999999999999999999999 9999999999641 0
Q ss_pred --------------hHHHHHHHHHHHhhhccccC----------CCceEEEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 784 --------------ELLDLVEMEIRELLTEYDFD----------GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 784 --------------~~~~~~~~~~~~~l~~~~~~----------~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
+.+.+...++...+...++. ...++++++||++|. |+++|+++|.
T Consensus 145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~-----------GI~eLl~~I~ 213 (594)
T 1g7s_A 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE-----------GIPELLTMLM 213 (594)
T ss_dssp CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT-----------THHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC-----------CchhHHHHHH
Confidence 11122222333333333332 235689999999884 8999999987
Q ss_pred ccCCCC-----CCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----------
Q psy5021 840 SSIPTP-----NRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF---------- 904 (1021)
Q Consensus 840 ~~l~~~-----~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~---------- 904 (1021)
..++.+ ....+.|+++.|.+++..+|.|++++|+|.+|+|++||.+.+.|.+....++|++|...
T Consensus 214 ~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~ 293 (594)
T 1g7s_A 214 GLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESR 293 (594)
T ss_dssp HHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CC
T ss_pred hhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhcc
Confidence 654322 12357899999999999999999999999999999999999998776667899999864
Q ss_pred --ccccceec--cCceEEEEecccCccCcccceEEeeCC
Q psy5021 905 --KKTLDEGL--AGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 905 --~~~~~~a~--~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
..++++|. +|+.+. +. +..++..||.++...
T Consensus 294 ~~~~~v~ea~~~aG~~v~--~~--~l~~~~~Gd~l~~~~ 328 (594)
T 1g7s_A 294 KKFQKVDEVVAAAGIKIV--AP--GIDDVMAGSPLRVVT 328 (594)
T ss_dssp CSEEECSEEESSEEEEEE--CS--SCTTBCTTCEEEECS
T ss_pred CCceEccEEcCCCCcEEE--Ec--ccCCCCCCCEEEecC
Confidence 23677777 565543 23 355678999998654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=278.77 Aligned_cols=266 Identities=23% Similarity=0.266 Sum_probs=213.4
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccc-ccc-cccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIY-GGE-VRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~-~~~-~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
....+++|++++|||||+++|++....+. .+. ......+|....|+++|+|+......+.+.+..++|||||||.+|.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 35789999999999999999985433211 111 1223456888899999999999988898889999999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc---------
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE--------- 799 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~--------- 799 (1021)
..+..+++.+|++++|+|+++|...|+++++..+...++| +|+++||+|+. . ..+...+++.+.+..
T Consensus 89 ~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~--~~~~~~~~l~~~l~~~~~~~~Pi~ 164 (665)
T 2dy1_A 89 GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP-RMVVVTKLDKG-G--DYYALLEDLRSTLGPILPIDLPLY 164 (665)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECGGGC-C--CHHHHHHHHHHHHCSEEECEEEEE
T ss_pred HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCC-EEEEecCCchh-h--hHHHHHHHHHHHhCCcceEEeeec
Confidence 9999999999999999999999999999999999999999 78899999986 2 123333344333220
Q ss_pred --------------------------------------------------------------cc--------------cC
Q psy5021 800 --------------------------------------------------------------YD--------------FD 803 (1021)
Q Consensus 800 --------------------------------------------------------------~~--------------~~ 803 (1021)
.. ..
T Consensus 165 ~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~ 244 (665)
T 2dy1_A 165 EGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRR 244 (665)
T ss_dssp ETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred CCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence 00 00
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC-CCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI-TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNG 882 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~-~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~g 882 (1021)
...+|++++||++|. |++.|+++|.+.+|.|... .+.|+.+.|.+++..++.|+++.|+|.+|+|++|
T Consensus 245 ~~~~pv~~~SA~~~~-----------Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g 313 (665)
T 2dy1_A 245 GLLYPVALASGEREI-----------GVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPG 313 (665)
T ss_dssp TSCEEEEECBTTTTB-----------SHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTT
T ss_pred CCeeEEEEeecccCc-----------CHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecC
Confidence 112689999999873 8999999999989877643 6789999999999999999999999999999999
Q ss_pred CEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 883 EEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 883 d~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|+|.+.+ .+.+|.+|... ..++++|.|||.|++. + .+++++||+||+.+
T Consensus 314 ~~v~~~~----~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~--g--l~~~~~Gdtl~~~~ 366 (665)
T 2dy1_A 314 DSLQSEA----GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP--K--AEGLHRGMVLWQGE 366 (665)
T ss_dssp EEEBCTT----SCEEESSEEEEETTEEEEESCEETTCEEEES--S--CTTCCTTCEEESSS
T ss_pred CEEEcCC----CeEEEeEEEEEeCCCeeECCEECCCCEEEEe--C--CccCccCCEEecCC
Confidence 9998765 23577777753 3589999999999885 3 45688999999754
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=273.49 Aligned_cols=270 Identities=25% Similarity=0.319 Sum_probs=198.7
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc-cc-cccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GE-VRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~-~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
+...++++|++++|||||+++|+........ +. ....+++|....|+++|+|+......+.+.+..++|||||||.+|
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 4568899999999999999999854322211 11 012345788899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc------
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD------ 801 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~------ 801 (1021)
...+..+++.+|++|+|+|++++...|+.++|..+...++| +++++||+|+.... .+...+++.+.+....
T Consensus 91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~--~~~~~~~l~~~l~~~~~~~~~P 167 (691)
T 1dar_A 91 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGAD--LWLVIRTMQERLGARPVVMQLP 167 (691)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--HHHHHHHHHHTTCCCEEECEEE
T ss_pred HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCcccCC--HHHHHHHHHHHhCCCccceecc
Confidence 99999999999999999999999999999999999999999 88899999987522 3334444444432100
Q ss_pred --------------------cC----------------------------------------------------------
Q psy5021 802 --------------------FD---------------------------------------------------------- 803 (1021)
Q Consensus 802 --------------------~~---------------------------------------------------------- 803 (1021)
|.
T Consensus 168 i~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~ 247 (691)
T 1dar_A 168 IGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247 (691)
T ss_dssp ESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred ccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHH
Confidence 00
Q ss_pred -----CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC------------------CCCCCeeEEEEEE
Q psy5021 804 -----GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR------------------ITDKPFLMPIEDV 860 (1021)
Q Consensus 804 -----~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~------------------~~~~p~~~~I~~~ 860 (1021)
...+|+++.||+++. |++.||+.+.+++|+|.. ..+.|+.+.|.++
T Consensus 248 ~~~~~~~~~Pv~~gSA~~~~-----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~ 316 (691)
T 1dar_A 248 KGTIDLKITPVFLGSALKNK-----------GVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKI 316 (691)
T ss_dssp HHHHTTSCEEEEECBGGGTB-----------SHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEE
T ss_pred HHHHhCcEeEEEEeecccCc-----------CHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEE
Confidence 012578888888763 899999999999998864 2467999999999
Q ss_pred EeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEe
Q psy5021 861 FSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLA 936 (1021)
Q Consensus 861 ~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 936 (1021)
+..++.|.++.|+|.+|+|++||+|.....+ .+.+|..+... ..++++|.|||.+++. + .++++.||+||
T Consensus 317 ~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~Gdtl~ 390 (691)
T 1dar_A 317 MADPYVGRLTFIRVYSGTLTSGSYVYNTTKG--RKERVARLLRMHANHREEVEELKAGDLGAVV--G--LKETITGDTLV 390 (691)
T ss_dssp EEETTTEEEEEEEEEESEEESSCEEEETTTT--EEEECCEEEEECSSCEEEESEEETTCEEEEE--C--CSSCCTTCEEE
T ss_pred EEcCCCCcEEEEEEeeeeEecCCEEEecCCC--cEEEEceEEEEeCCCceEcceecCCCEEEEe--C--cccCccCCEEe
Confidence 9999999999999999999999999976433 34566666654 3589999999999987 4 45678899999
Q ss_pred eCC
Q psy5021 937 KIG 939 (1021)
Q Consensus 937 ~~~ 939 (1021)
+.+
T Consensus 391 ~~~ 393 (691)
T 1dar_A 391 GED 393 (691)
T ss_dssp ETT
T ss_pred cCC
Confidence 754
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=270.83 Aligned_cols=270 Identities=22% Similarity=0.327 Sum_probs=198.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc-cc-cccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GE-VRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~-~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
+...++++|++|+|||||+++|+.....+.. +. ....+++|....|+++|+|+......+.+.+..++|||||||.+|
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 3467899999999999999999964322211 00 012245688889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc-------
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY------- 800 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~------- 800 (1021)
...+..+++.+|++|+|+|++++...++..+|..+...++| +|+++||+|+...+ .....+++++.+...
T Consensus 89 ~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~--~~~~~~~l~~~l~~~~~~~~ip 165 (693)
T 2xex_A 89 TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVP-RIVFVNKMDKLGAN--FEYSVSTLHDRLQANAAPIQLP 165 (693)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--HHHHHHHHHHHHCCCEEESEEE
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCC-EEEEEECCCccccc--hHHHHHHHHHHhCCCceeEEee
Confidence 99999999999999999999999999999999999999999 88899999997522 233334444433210
Q ss_pred -------------------ccC----------------------------------------------------------
Q psy5021 801 -------------------DFD---------------------------------------------------------- 803 (1021)
Q Consensus 801 -------------------~~~---------------------------------------------------------- 803 (1021)
-|.
T Consensus 166 isa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~ 245 (693)
T 2xex_A 166 IGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIR 245 (693)
T ss_dssp ECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHH
Confidence 000
Q ss_pred -----CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC--------------------CCCCCeeEEEE
Q psy5021 804 -----GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR--------------------ITDKPFLMPIE 858 (1021)
Q Consensus 804 -----~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~--------------------~~~~p~~~~I~ 858 (1021)
..-+|+++.||+++ .|++.|++.+.+++|+|.. ..+.||.+.|.
T Consensus 246 ~~~~~~~~~Pv~~gSA~~~-----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~Vf 314 (693)
T 2xex_A 246 QATTNVEFYPVLCGTAFKN-----------KGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAF 314 (693)
T ss_dssp HHHHTTSCEEEEECBTTTT-----------BSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEE
T ss_pred HHHHhCCeeeEEEeecccC-----------cCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEE
Confidence 01146777788766 3789999999999998754 14679999999
Q ss_pred EEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc----cccceeccCceEEEEecccCccCcccceE
Q psy5021 859 DVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK----KTLDEGLAGENVGILLRSVKREEVERGQV 934 (1021)
Q Consensus 859 ~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~----~~~~~a~~G~~v~l~l~~~~~~~i~~G~v 934 (1021)
+++..++.|.++.|||.+|+|++||+|..... ..+.+|..|...+ .++++|.|||.+++. + .++++.||+
T Consensus 315 K~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~--~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~GdT 388 (693)
T 2xex_A 315 KVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTK--GKRERVGRLLQMHANSRQEIDTVYSGDIAAAV--G--LKDTGTGDT 388 (693)
T ss_dssp EEEEETTTEEEEEEEEEESEEETTEEEEETTT--TEEEEECCEEEECSSCEEECSEEETTCEEEEE--S--CSSCCTTCE
T ss_pred EeeecCCCceEEEEEEEeeeEecCCEEEecCC--CceEEeceEEEEeCCCceEccccCcCCEEEEe--C--cccCccCCE
Confidence 99999999999999999999999999997632 3446777776543 589999999999987 4 456788999
Q ss_pred EeeCC
Q psy5021 935 LAKIG 939 (1021)
Q Consensus 935 l~~~~ 939 (1021)
||+.+
T Consensus 389 l~~~~ 393 (693)
T 2xex_A 389 LCGEK 393 (693)
T ss_dssp EEETT
T ss_pred EecCC
Confidence 99754
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-23 Score=255.12 Aligned_cols=284 Identities=23% Similarity=0.368 Sum_probs=192.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC----------------Ce
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE----------------NK 714 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~----------------~~ 714 (1021)
...++++||++||||||+++|+.....+........+++|....|+++|+|+......+.+. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 45789999999999999999997654443322223356788899999999998877666554 57
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc------hh---hH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ------DK---EL 785 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~------~~---~~ 785 (1021)
.++|||||||.+|...+..+++.+|++|+|+|+++|...|+..+|..+...++| +|+++||+|+.. .+ ..
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~ilviNK~D~~~~e~~~~~~e~~~~ 177 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINKVDRALLELQVSKEDLYQT 177 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEECHHHHHHTSCCCHHHHHHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-eEEEEECCCcchhhhccCHHHHHHH
Confidence 899999999999999999999999999999999999999999999988888999 788999999863 11 12
Q ss_pred HHHHHHHHHHhhhcc-----c---cCCCceEEEEecccccccC------------------------CC-----C-----
Q psy5021 786 LDLVEMEIRELLTEY-----D---FDGENTKIVIGSALLALEG------------------------KD-----D----- 823 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~-----~---~~~~~~~ii~iSa~~~~~~------------------------~~-----~----- 823 (1021)
++...+++...+..+ + +.+...++...|+++|+.. ++ .
T Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~ 257 (842)
T 1n0u_A 178 FARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKW 257 (842)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTEE
T ss_pred HHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCeE
Confidence 334444444444321 1 3322234666788654210 00 0
Q ss_pred -----Cc--------------------------------------cC--c--------------------ch-HHHHHHh
Q psy5021 824 -----NQ--------------------------------------LG--T--------------------TS-IKKLLDV 837 (1021)
Q Consensus 824 -----~~--------------------------------------~~--~--------------------~~-i~~Ll~~ 837 (1021)
.. .+ . .. +..||+.
T Consensus 258 ~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LLd~ 337 (842)
T 1n0u_A 258 TNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEM 337 (842)
T ss_dssp ESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHHHH
T ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHHHH
Confidence 00 00 0 00 2678888
Q ss_pred hhccCCCCCC-------------------------CCCCCeeEEEEEEEeeCCcee-EEEEEEEEEEeeCCCEEEEeecC
Q psy5021 838 LDSSIPTPNR-------------------------ITDKPFLMPIEDVFSISGRGT-VVTGKIERGIVKNGEEIEIVGYK 891 (1021)
Q Consensus 838 l~~~l~~~~~-------------------------~~~~p~~~~I~~~~~v~g~G~-Vv~G~V~~G~l~~gd~v~i~p~~ 891 (1021)
+.+++|+|.. ..+.|+.+.|..++..+..|. +..+||.+|+|++||.|.+...+
T Consensus 338 i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~ 417 (842)
T 1n0u_A 338 IVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPN 417 (842)
T ss_dssp HHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTT
T ss_pred HHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEecccc
Confidence 8888887741 346799999999999999995 99999999999999999875321
Q ss_pred ----Ce---eEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeC
Q psy5021 892 ----QT---IKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKI 938 (1021)
Q Consensus 892 ----~~---~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~ 938 (1021)
+. .+.+|..|... ..++++|.|||.|++. +++...+..| +||+.
T Consensus 418 ~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~--gl~~~~~~t~-Tl~~~ 472 (842)
T 1n0u_A 418 YVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV--GIDQFLLKTG-TLTTS 472 (842)
T ss_dssp CCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEE--SCTTTCCSSE-EEESC
T ss_pred ccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEE--ccccceecce-eecCC
Confidence 11 14677777765 3489999999998775 4333323445 88764
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-18 Score=188.11 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=91.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
-+.++|+|+|++|+|||||+|+|+.....+... ..+.|.......+.+. +.+++|||||
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-----------------~~~tTr~~i~~i~~~~----~~~l~l~DTp 63 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-----------------RPQTTRKRLRGILTEG----RRQIVFVDTP 63 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-----------------SSCCCCSCEEEEEEET----TEEEEEEECC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecC-----------------CCCceeEEEEEEEEeC----CcEEEEecCc
Confidence 456789999999999999999998654432210 0112222222223444 7899999999
Q ss_pred CCCC--------cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhc--CCCEEEEEeCcCCCC
Q psy5021 86 GHVD--------FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~--------f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
|+.+ |...+..+++.+|++|+|+|++++....+..+++.+... ++|+++|+||+|+..
T Consensus 64 G~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 64 GLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 9987 677888999999999999999999888888888888877 899999999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=184.04 Aligned_cols=118 Identities=22% Similarity=0.239 Sum_probs=90.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
...--.|+|+|++|+|||||+++|+.....+.. ...+.|.......+.+. .+++++||||
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-----------------~~~~tT~~~~~~~~~~~---~~~~i~lvDT 66 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-----------------PKAGTTRMRVLGVKNIP---NEAQIIFLDT 66 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-----------------SSSCCCCSCEEEEEEET---TTEEEEEEEC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-----------------CCCCceeeEEEEEEecC---CCCeEEEEEC
Confidence 344567999999999999999999854433211 11233433332222222 1688999999
Q ss_pred CCCCCcH----------HHHHHHhhccCeEEEEEeCCCCCchhHHHH-HHHHhhcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFT----------IEVERSLRVLDGAVIIICASSGIQPQTETV-WFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~----------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~-~~~~~~~~~p~iiviNK~D~~ 142 (1021)
||+.++. ..+..+++.+|++|+|+|++++...++..+ ++.+...++|+++|+||+|+.
T Consensus 67 PG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 67 PGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred cCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 9997765 677889999999999999999999999998 677788899999999999986
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-19 Score=199.93 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=91.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+..+.+||+|+|+.|+|||||+++|+.... ...+..+|+|++.....+.+.. ...++|||
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~-----------------~~~~~~~gtT~d~~~~~~~~~~---~~~l~liD 89 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNV-----------------SIVSDYAGTTTDPVYKSMELHP---IGPVTLVD 89 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC------------------------------CCCCEEEEEETT---TEEEEEEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCC-----------------CccCCCCCeeeeeEEEEEEECC---CCeEEEEE
Confidence 566789999999999999999999853221 1223566888888887787772 23899999
Q ss_pred CCCCCCcHH-------HHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCC
Q psy5021 84 TPGHVDFTI-------EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGAN 145 (1021)
Q Consensus 84 tPG~~~f~~-------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~ 145 (1021)
||||.+|.. .+..+++.+|++|+|+|+ +...++..+++.+...++|+++|+||+|+...+
T Consensus 90 TpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 90 TPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp CSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred CcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 999998853 367788999999999999 788999999999999999999999999997654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-18 Score=186.56 Aligned_cols=116 Identities=21% Similarity=0.215 Sum_probs=87.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
-+..+|+|+||+|+|||||+++|+.....+.. + ..+.|.......+.+. +++++++|||
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-----------~------~~~tTr~~~~gi~~~~----~~~i~~iDTp 64 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITS-----------R------KAQTTRHRIVGIHTEG----AYQAIYVDTP 64 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECC-----------C------CSSCCSSCEEEEEEET----TEEEEEESSS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccC-----------C------CCCcceeeEEEEEEEC----CeeEEEEECc
Confidence 34578999999999999999999854322111 0 0122322222234455 7899999999
Q ss_pred CCC---------CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 86 GHV---------DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~---------~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|+. +|...+..+++.+|++++|+|+++ +..+++.+++.+...+.|+++++||+|+..
T Consensus 65 G~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 65 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp SCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred CCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 998 333445667889999999999988 999999999888888999999999999864
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=168.27 Aligned_cols=120 Identities=30% Similarity=0.407 Sum_probs=95.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++..+|+++|..|+|||||+++|+...-... ...++|.......+.+. +..+++||||
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~----~~~~~l~Dt~ 63 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ------------------EAGGITQHIGAYQVTVN----DKKITFLDTP 63 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCS------------------SCCSSSTTCCCCEEEET----TEEEEESCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccC------------------CCCceeEeeeEEEEEeC----CceEEEEECC
Confidence 4678999999999999999999974221110 11233333333445566 7789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHH
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYN 147 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~ 147 (1021)
|+.+|...+.++++.+|++|+|+|++++...++.+.+..+...++|+++|+||+|+...+.+
T Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~ 125 (178)
T 2lkc_A 64 GHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPD 125 (178)
T ss_dssp SSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHH
T ss_pred CCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHH
Confidence 99999888888899999999999999998888888888888889999999999999765443
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=162.75 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=86.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+++|+++|+.|+|||||+++|....... .+...+.|.......+.+. +..+.+|||||+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~----~~~~~l~Dt~G~ 59 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV-----------------VADVPGVTRDLKEGVVETD----RGRFLLVDTGGL 59 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC----------------------------CCEEEEEEET----TEEEEEEECGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeee-----------------ccCCCCceecceEEEEEeC----CceEEEEECCCC
Confidence 4799999999999999999997533211 1122344555444555555 678999999999
Q ss_pred CC-------cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VD-------FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~-------f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+ +...+..+++.+|++++|+|++++.......+++.+...++|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 60 WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp CSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred CCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 87 45667778899999999999999888777777777777899999999999985
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=172.58 Aligned_cols=121 Identities=15% Similarity=0.083 Sum_probs=86.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+..+..+|+++|+.|+|||||+++|+..... ... ....|.|.......+.+ ..+..++|||
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~-~~~---------------~~~~~~t~~~~~~~~~~---~~~~~~~l~D 85 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRL-AFA---------------SKTPGRTQHINYFSVGP---AAEPVAHLVD 85 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSS-SCT---------------TCCCCSCCCEEEEEESC---TTSCSEEEEE
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcc-eee---------------cCCCCcccceEEEEecC---CCCCcEEEEc
Confidence 4456789999999999999999999643210 000 01123444433333321 2267899999
Q ss_pred CCCCCCc----------HHHHHHHhhc---cCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 84 TPGHVDF----------TIEVERSLRV---LDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG~~~f----------~~~~~~~l~~---~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|||+.+- ...+..+++. +|++|+|+|++++.......+++.+...++|+++|+||+|+..
T Consensus 86 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 86 LPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp CCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred CCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 9997442 3344444544 8889999999999888888888999889999999999999864
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-18 Score=184.98 Aligned_cols=202 Identities=14% Similarity=0.074 Sum_probs=127.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+|+|++|+|||||+++|+......... ...++|.......+.|. ++.++|||||
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~----~~~i~iiDTp 79 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL----------------GSQTLTKTCSKSQGSWG----NREIVIIDTP 79 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT----------------TSCCCCCSCEEEEEEET----TEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC----------------CCCceeeeeEEEEEEeC----CCEEEEEECc
Confidence 356899999999999999999998654332211 01124555555667777 8899999999
Q ss_pred CCCCcH-----------HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhc-----CCCEEEEEe-CcCCCCCCHHH
Q psy5021 86 GHVDFT-----------IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY-----KVPKMIFVN-KMDRIGANYNN 148 (1021)
Q Consensus 86 G~~~f~-----------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~-----~~p~iiviN-K~D~~~~~~~~ 148 (1021)
|+.+|. ..+..+++.+|++|+|+|++. +..+...+|+++... +.|.++++| |+|+...++..
T Consensus 80 G~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~ 158 (260)
T 2xtp_A 80 DMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMD 158 (260)
T ss_dssp GGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHH
Confidence 998873 223347788999999999985 778888888877665 678888888 99998766544
Q ss_pred HH--------HHHHHHhCCceeeee-eec------ccCCceeeEEeccccee-eeecCCCeeeccCCh--hhHHHHHHHH
Q psy5021 149 CI--------IDIKKKFNCIVLPIN-FNI------GIEENYEGIVDIINKKS-FFWKENSIIIKNIDK--DQLSAFDYYN 210 (1021)
Q Consensus 149 ~~--------~~i~~~l~~~~~~~~-~p~------~~~~~~~g~id~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~ 210 (1021)
.+ .++.+.++....++. +|+ +-..-|.++.+++.+.. ++|..+.+ .+.|. .......+.+
T Consensus 159 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 236 (260)
T 2xtp_A 159 YMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLY--SLIQRSKCGPVGSDERV 236 (260)
T ss_dssp HHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHH--HHC-------------C
T ss_pred HHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHH--HHHHHHHhhhhhHHHHH
Confidence 22 224444443321111 222 22234555566665554 56643322 23333 3344556677
Q ss_pred HHHHHHhcCCCHHHHHHHHc
Q psy5021 211 ELMLETLSNNDEFFLEKYIN 230 (1021)
Q Consensus 211 ~~l~e~~~~~d~~l~e~~l~ 230 (1021)
..+.|.+++.+++++++|.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~ 256 (260)
T 2xtp_A 237 KEFKQSLIKYMETQRSYTAL 256 (260)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999864
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=160.12 Aligned_cols=115 Identities=17% Similarity=0.061 Sum_probs=84.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|....-. . + ..|+......+.+. ...+.+|||
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~------------~-------~~t~~~~~~~~~~~----~~~~~~~Dt 58 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV--T------------T-------IPTIGFNVETVTYK----NLKFQVWDL 58 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC--C------------C-------CCCSSEEEEEEEET----TEEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC--C------------c-------CCcCccceEEEEEC----CEEEEEEEC
Confidence 355689999999999999999999642210 0 0 11333333455666 789999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH-hh---cCCCEEEEEeCcCCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS-QK---YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~-~~---~~~p~iiviNK~D~~~~ 144 (1021)
||+.+|...+..+++.+|++|+|+|+++...... ...+... .. .++|+++|+||+|+...
T Consensus 59 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 59 GGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp CCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 9999999888899999999999999998743322 2233333 22 58999999999999654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=155.91 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=80.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.|+|||||+++|+...-. ++ ..|+......+.+. ++.+++|||||+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~--------------~~-------~~t~~~~~~~~~~~----~~~~~i~Dt~G~~~ 56 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV--------------TT-------IPTIGFNVETVEYK----NISFTVWDVGGQDK 56 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS--------------CC-------CCCSSCCEEEEECS----SCEEEEEECCCCGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC--------------cc-------cCcCceeEEEEEEC----CEEEEEEEcCCChh
Confidence 6999999999999999999753311 00 01222223344455 78999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh----cCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK----YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~----~~~p~iiviNK~D~~~~ 144 (1021)
|...+..+++.+|++++|+|+++...... ...+..... .++|+++|+||+|+...
T Consensus 57 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 99999999999999999999987643322 223333322 37999999999999653
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-17 Score=190.98 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=89.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+...+|+++|++|+|||||+++|+....... +...|+|.+.....+.+. +..++|||||
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~-----------------~~~~gtT~d~~~~~~~~~----~~~~~l~DT~ 231 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-----------------SNVAGTTRDAVDTSFTYN----QQEFVIVDTA 231 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-----------------C---------CCEEEEET----TEEEEETTHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceee-----------------cCCCCceeeeeEEEEEEC----CeEEEEEECC
Confidence 3568999999999999999999974322111 124577877777777777 7789999999
Q ss_pred CCCCc----------HHH-HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDF----------TIE-VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f----------~~~-~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
|+.++ ... ...+++.+|++|+|+|++++...|+..++..+...++|+++|+||+|+...
T Consensus 232 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 232 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp HHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc
Confidence 99443 322 346889999999999999999999999888888899999999999998643
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=161.53 Aligned_cols=113 Identities=16% Similarity=0.092 Sum_probs=79.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+..... . + ..|+......+.+. ++.+.+||||
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~------------~-------~~t~~~~~~~~~~~----~~~~~i~Dt~ 68 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV--H------------T-------SPTIGSNVEEIVIN----NTRFLMWDIG 68 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE--E------------E-------ECCSCSSCEEEEET----TEEEEEEECC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--c------------C-------cCCCccceEEEEEC----CEEEEEEECC
Confidence 34678999999999999999999732211 0 0 01222233345555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh----cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~----~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|++++..... ...+..+.. .++|+++|+||+|+..
T Consensus 69 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp C----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred CCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 999999999999999999999999998743332 233333332 5899999999999964
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=160.23 Aligned_cols=115 Identities=19% Similarity=0.094 Sum_probs=83.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-... ...|+......+.+. ++.+++||||
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~t~~~~~~~~~~~----~~~~~l~Dt~ 75 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED--------------------MIPTVGFNMRKITKG----NVTIKLWDIG 75 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------------CCCCCSEEEEEEEET----TEEEEEEEEC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc--------------------cCCCCceeEEEEEeC----CEEEEEEECC
Confidence 3457899999999999999999975321100 011333333344555 8899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++|+|+|+++....+. ...+..+. ..++|+++|+||+|+...
T Consensus 76 G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 76 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp CSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 999999999999999999999999987543332 22333332 268999999999999654
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=174.86 Aligned_cols=163 Identities=20% Similarity=0.243 Sum_probs=121.2
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-CeEEEEEecCChh-
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-NKHYAHVDCPGHA- 725 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~- 725 (1021)
.-.+..++++|.+|+|||||+|+|++....+. ....+.|.+.....+..+ +..+.||||||+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~---------------s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~ 71 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII---------------SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC---------------CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCcccc---------------CCCCCceeeEEEEEEecCCCCeEEEEECcCCCc
Confidence 34566789999999999999999998543221 123355666666666777 8899999999984
Q ss_pred ---------hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHH-HHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 726 ---------DYIKNMITGAAQMDGAILVCSAVDGPMPQTREH-ILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 726 ---------~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~-l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
.+...+..++..+|++++|+|++++...++... +..+...++| +|+|+||+|+...........+++.+
T Consensus 72 ~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~~~~~~~~l~~ 150 (308)
T 3iev_A 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKP-VIVVINKIDKIGPAKNVLPLIDEIHK 150 (308)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC-EEEEEECGGGSSSGGGGHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC-EEEEEECccCCCCHHHHHHHHHHHHH
Confidence 355777888899999999999999888888777 6777777888 89999999998322223323333333
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.++ ...+++++||++| .|+++|++.|.+.++
T Consensus 151 ---~~~---~~~~i~~vSA~~g-----------~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 151 ---KHP---ELTEIVPISALKG-----------ANLDELVKTILKYLP 181 (308)
T ss_dssp ---HCT---TCCCEEECBTTTT-----------BSHHHHHHHHHHHSC
T ss_pred ---hcc---CCCeEEEEeCCCC-----------CCHHHHHHHHHHhCc
Confidence 332 1257999999987 389999999988765
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-17 Score=175.41 Aligned_cols=111 Identities=20% Similarity=0.235 Sum_probs=86.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+++|+++|++|+|||||+++|.... ...| ...|+|+......+.+. +..+++|||||+
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~---~~v~---------------~~pg~Tv~~~~~~~~~~----~~~~~lvDtpG~ 58 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNAN---QRVG---------------NWPGVTVEKKTGEFLLG----EHLIEITDLPGV 58 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTS---EEEE---------------ECTTSSSEEEEEEEEET----TEEEEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CCcc---------------CCCCceEEEEEEEEEEC----CeEEEEEeCCCc
Confidence 4789999999999999999996322 1111 12477877777777777 789999999999
Q ss_pred CCcHH----------HHHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTI----------EVERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~----------~~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+|.. .+..++ +.+|++|+|+|+++ ......++.++...++|+++|+||+|+.
T Consensus 59 ~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 59 YSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp SSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred ccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 98864 233445 78999999999987 3455566778888899999999999973
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=173.37 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=116.1
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh--
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD-- 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~-- 726 (1021)
.++..++++|++|+|||||+|+|++....+... ..++|.+.....+..++..+.||||||+.+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~---------------~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP---------------RPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS---------------SSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecC---------------CCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence 567789999999999999999999865332211 112333333334556788999999999876
Q ss_pred ------hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 727 ------YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 727 ------~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
|...+..+++.+|++++|+|++++....+...+..+... ++| +|+|+||+|+.+.... +.+.+..+
T Consensus 70 ~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~---~~~~~~~~-- 143 (301)
T 1wf3_A 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAAKYPEE---AMKAYHEL-- 143 (301)
T ss_dssp SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGCSSHHH---HHHHHHHT--
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECcccCCchHH---HHHHHHHh--
Confidence 667778888999999999999988877776666777766 788 8999999999763220 22233333
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.+ ..+++++||++| .++++|++.|.+.++
T Consensus 144 -~~----~~~~~~iSA~~g-----------~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 144 -LP----EAEPRMLSALDE-----------RQVAELKADLLALMP 172 (301)
T ss_dssp -ST----TSEEEECCTTCH-----------HHHHHHHHHHHTTCC
T ss_pred -cC----cCcEEEEeCCCC-----------CCHHHHHHHHHHhcc
Confidence 22 247899999987 489999999987664
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-16 Score=161.22 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=84.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+....++|+++|+.|+|||||+++|+....... ++ ..|+......+.+. .+.+++||
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~------------~~-------~~t~~~~~~~~~~~----~~~~~i~D 69 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK------------HI-------TATVGYNVETFEKG----RVAFTVFD 69 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----------------CC-------CCCSSEEEEEEEET----TEEEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc------------cc-------ccccceeEEEEEeC----CEEEEEEE
Confidence 355678999999999999999999953221110 01 11333333344455 89999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhhc-----------CCCEEEEEeCcCCCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQKY-----------KVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~~-----------~~p~iiviNK~D~~~~ 144 (1021)
|||+.+|...+..+++.+|++|+|+|++++...... ..|..+... ++|+++|+||+|+...
T Consensus 70 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 70 MGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp ECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 999999999999999999999999999987543332 344444433 8999999999999654
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=162.14 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=82.4
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+..+..+|+++|+.|+|||||+++|+..... .. .....|.|...... .+ +..+.+||
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~---------------~~~~~~~t~~~~~~--~~-----~~~~~l~D 75 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNL-AR---------------TSSKPGKTQTLNFY--II-----NDELHFVD 75 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------------CCEEEE--EE-----TTTEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cc---------------cCCCCCceeeEEEE--EE-----CCcEEEEE
Confidence 4456789999999999999999999742200 00 00122333332221 11 23699999
Q ss_pred CCC----------CCCcHHHHHHHhhcc---CeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 84 TPG----------HVDFTIEVERSLRVL---DGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG----------~~~f~~~~~~~l~~~---D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
||| +..|...+..+++.+ |++++|+|++++.......+++++...++|+++|+||+|+..
T Consensus 76 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 76 VPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp CCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 999 445555566666666 999999999999888888888888888999999999999864
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=186.17 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=92.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+...+|+++|++|+|||||+++|+........ ...|+|.+.....+.+. +..++|||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-----------------~~~gtt~~~~~~~~~~~----~~~~~l~DT~ 251 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-----------------NVAGTTRDAVDTSFTYN----QQEFVIVDTA 251 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----------------C------CTTSEEEEET----TEEEEETTGG
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccC-----------------CCCCeEEEEEEEEEEEC----CceEEEEECC
Confidence 45789999999999999999999743221111 23466777766677777 7899999999
Q ss_pred C----------CCCcHHHH-HHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 86 G----------HVDFTIEV-ERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G----------~~~f~~~~-~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
| +..|.... ..+++.+|++|+|+|++++...++..++..+...++|+++|+||+|+...
T Consensus 252 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 252 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp GTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 9 45665543 45889999999999999999999999999999999999999999998643
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=165.30 Aligned_cols=168 Identities=20% Similarity=0.177 Sum_probs=118.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe-eCCeEEEEEecCCh----
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE-SENKHYAHVDCPGH---- 724 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~-~~~~~i~liDtpG~---- 724 (1021)
....++++|.+++|||||+|+|++.... .......|.|.+.....+. ..+..+.||||||+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 93 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRL--------------AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAE 93 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSS--------------SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc--------------eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCccc
Confidence 3567899999999999999999985310 0112234566666655555 55678999999995
Q ss_pred ------hhhHHHHHHHhhh---CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 725 ------ADYIKNMITGAAQ---MDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 725 ------~~~~~~~~~~~~~---aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
+.|...+..+++. +|++++|+|++++......+++..+...++| +|+|+||+|+.+..+ ......++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~Dl~~~~~-~~~~~~~~~~ 171 (223)
T 4dhe_A 94 VPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKCDKLTRQE-SINALRATQK 171 (223)
T ss_dssp CCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECGGGSCHHH-HHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEeccccCChhh-HHHHHHHHHH
Confidence 4444444444444 8899999999998888888888888888898 999999999986332 2223333333
Q ss_pred hhhcc---ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 796 LLTEY---DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 796 ~l~~~---~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
.+..+ +. ....+++++||++| .|+++|+++|.+.++.+
T Consensus 172 ~l~~~~~~~~-~~~~~~~~~SA~~g-----------~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 172 SLDAYRDAGY-AGKLTVQLFSALKR-----------TGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHHHHHTC-CSCEEEEEEBTTTT-----------BSHHHHHHHHHHHHC--
T ss_pred HHHhhhhccc-CCCCeEEEeecCCC-----------cCHHHHHHHHHHhcCcc
Confidence 33332 00 12478999999987 48999999998877544
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=159.32 Aligned_cols=119 Identities=18% Similarity=0.091 Sum_probs=81.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+...-... ..+.++.......+.+ ++..+.+.+|||
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt 68 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEF------------------QESTIGAAFFSQTLAV--NDATVKFEIWDT 68 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTT------------------SCCCSCCSEEEEEEEE--TTEEEEEEEEEC
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCc------------------CCCCceeEEEEEEEEE--CCEEEEEEEEeC
Confidence 34557899999999999999999975321110 0111111111112222 233678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh---cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK---YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~---~~~p~iiviNK~D~~~ 143 (1021)
||+.+|...+..+++.+|++|+|+|+++....+.. ..+..+.. .++|+++|+||+|+..
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 99999999999999999999999999876543333 33334433 3789999999999853
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=161.24 Aligned_cols=122 Identities=17% Similarity=0.130 Sum_probs=85.6
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|.+..++..+|+++|+.|+|||||+++|+........ ...++.......+.+ ++....+.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~~~ 62 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS------------------NHTIGVEFGSKIINV--GGKYVKLQ 62 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC------------------CCCSEEEEEEEEEEE--TTEEEEEE
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCccceEEEEEEEEE--CCEEEEEE
Confidence 4445567889999999999999999999753321110 112222222222333 23347899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH----HHHhhcCCCEEEEEeCcCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW----FQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~----~~~~~~~~p~iiviNK~D~~ 142 (1021)
+|||||+.+|...+..+++.+|++|+|+|+++....+....| ......++|+++|+||+|+.
T Consensus 63 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 63 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp EEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999999999999999999999999986443333333 22234679999999999984
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.5e-16 Score=159.24 Aligned_cols=116 Identities=13% Similarity=0.149 Sum_probs=83.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.....+|+++|+.|+|||||+++|+........ ...|.|.... +... +..+.+||
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~t~~~~---~~~~----~~~~~i~D 74 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-----------------KTPGKTRSIN---FYLV----NSKYYFVD 74 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-----------------SSCCCCCCEE---EEEE----TTTEEEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcccccc-----------------CCCCCccCeE---EEEE----CCcEEEEE
Confidence 4456679999999999999999999754311100 0112232221 2222 45688999
Q ss_pred CCC----------CCCcHHHHHHHhhcc---CeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 84 TPG----------HVDFTIEVERSLRVL---DGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG----------~~~f~~~~~~~l~~~---D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
||| +..|...+..+++.+ |++++|+|++.+.......+++++...++|+++|+||+|+..
T Consensus 75 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 75 LPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVK 147 (195)
T ss_dssp CCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 999 334544455555544 999999999999888888888888888999999999999864
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-17 Score=165.07 Aligned_cols=159 Identities=35% Similarity=0.445 Sum_probs=117.2
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+...+.++|.+++|||||+++|++.... .....++|.+.....+..++..+.+|||||+++|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 70 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT----------------EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT 70 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS----------------CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc----------------cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH
Confidence 4567889999999999999999874311 111223444455555667788999999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC----CC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD----GE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~----~~ 805 (1021)
.+..++..+|++++|+|++++...++.+.+..+...++| +++|+||+|+.+.. .+.+...+ ...+.. ..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~--~~~~~~~~----~~~~~~~~~~~~ 143 (178)
T 2lkc_A 71 MRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDKPEAN--PDRVMQEL----MEYNLVPEEWGG 143 (178)
T ss_dssp SCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTSSCSC--HHHHHHHH----TTTTCCBTTTTS
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccCCcCC--HHHHHHHH----HhcCcChhHcCC
Confidence 777778899999999999998888888888887777888 99999999997621 11222222 221111 11
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.++++++||++| .|+++++++|.+.+
T Consensus 144 ~~~~~~~Sa~~~-----------~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 144 DTIFCKLSAKTK-----------EGLDHLLEMILLVS 169 (178)
T ss_dssp SEEEEECCSSSS-----------HHHHHHHHHHHHHH
T ss_pred cccEEEEecCCC-----------CCHHHHHHHHHHhh
Confidence 368999999987 48899998887643
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=160.00 Aligned_cols=118 Identities=16% Similarity=0.074 Sum_probs=82.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+........ . ...|.+.... .+..++..+.+.+|||
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~------------~~~~~~~~~~----~~~~~~~~~~~~i~Dt 79 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNI----S------------PTIGASFMTK----TVPCGNELHKFLIWDT 79 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTC----C------------CCSSEEEEEE----EEECSSSEEEEEEEEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCc----C------------CCcceeEEEE----EEEeCCEEEEEEEEcC
Confidence 455679999999999999999999753211000 0 0112222222 2222334788999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999999999999999999999986544443333 33332 378999999999984
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=155.48 Aligned_cols=114 Identities=18% Similarity=0.085 Sum_probs=82.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|.... .. .+ ..|+......+.+. ++.+.+||||
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~--~~------------~~-------~~t~g~~~~~~~~~----~~~l~i~Dt~ 68 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED--IS------------HI-------TPTQGFNIKSVQSQ----GFKLNVWDIG 68 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC--CE------------EE-------EEETTEEEEEEEET----TEEEEEEECS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC--CC------------cc-------cCcCCeEEEEEEEC----CEEEEEEECC
Confidence 566899999999999999999995211 00 00 01222222344555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
|+..|...+..+++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+...
T Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp SCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 9999999999999999999999999876433322 2333332 257999999999999754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-16 Score=158.62 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|..+..+..+|+++|+.|+|||||+++|+....... +. .|+..... ..+..++..+.+.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-------------~~-------~t~~~~~~-~~~~~~~~~~~~~ 60 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD-------------YD-------PTIEDSYT-KICSVDGIPARLD 60 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS-------------CC-------TTCCEEEE-EEEEETTEEEEEE
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccc-------------cC-------CCcCceEE-EEEEECCEEEEEE
Confidence 544566788999999999999999999975421100 00 01111111 1122223357899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-----HHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-----TVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-----~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+|||||+.+|...+..+++.+|++++|+|+++....... .+++.....++|+++|+||+|+.
T Consensus 61 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 61 ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp EEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred EEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999998899999999999999999875322222 22233334689999999999984
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-16 Score=159.33 Aligned_cols=128 Identities=23% Similarity=0.168 Sum_probs=83.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEe-ecccCceeEEEEcC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW-EVNKFKYMINIIDT 84 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~~~~~i~liDt 84 (1021)
+...+|+++|+.|+|||||++.|......... +...... .....|+........+ ..++..+.+++|||
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~------~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt 81 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRK------GEMVSLA----TEDERTLFFDFLPLDIGEVKGFKTRFHLYTV 81 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGB------CCCEEEE----CSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcccccc------ccccccc----cccccceeeeecccccccccCCceEEEEEeC
Confidence 45678999999999999999766432111000 0000000 0011122222111111 12344678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh---------cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK---------YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~---------~~~p~iiviNK~D~~~ 143 (1021)
||+.+|...+..+++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+..
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 9999999999999999999999999997765555554443322 5899999999999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=173.54 Aligned_cols=111 Identities=19% Similarity=0.239 Sum_probs=84.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|++|+|||||+++|+... ...+ ...|+|+......+.+. +..+++|||||+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~---~~v~---------------~~~g~t~~~~~~~~~~~----~~~~~liDtpG~ 60 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR---QRVG---------------NWAGVTVERKEGQFSTT----DHQVTLVDLPGT 60 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC---EEEE---------------ECTTSSSEEEEEEEECS----SCEEEEEECCCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC---cccC---------------CCCCeeEEEEEEEEEeC----CCceEEEECcCC
Confidence 3689999999999999999996432 1111 22467777777777776 788999999999
Q ss_pred CCcHH---------H-HHHH--hhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTI---------E-VERS--LRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~---------~-~~~~--l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+|.. . +..+ .+.+|++|+|+|+++ ......++.++...++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 61 YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp SCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred CccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccch
Confidence 88862 1 1222 268999999999987 3445556677778899999999999973
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8e-16 Score=158.09 Aligned_cols=114 Identities=15% Similarity=0.080 Sum_probs=77.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+... .. ++ ..|+......+.+. +..+++||||
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~--~~------------~~-------~~t~~~~~~~~~~~----~~~~~i~Dt~ 81 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE--IV------------TT-------IPTIGFNVETVEYK----NICFTVWDVG 81 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC--CE------------EE-------EEETTEEEEEEEET----TEEEEEEECC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC--cc------------cc-------CCcCceeEEEEEEC----CEEEEEEECC
Confidence 345789999999999999999995211 10 00 11333333345555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh----cCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK----YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~----~~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 82 G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 82 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp -----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 9999999999999999999999999876433322 23333322 47999999999999653
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-16 Score=158.02 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=81.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+........ ...|+......+.+. ++.+.+||||
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------------~~~t~~~~~~~~~~~----~~~~~l~Dt~ 75 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-------------------ILPTIGFSIEKFKSS----SLSFTVFDMS 75 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-------------------CCCCSSEEEEEEECS----SCEEEEEEEC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------------cCCccceeEEEEEEC----CEEEEEEECC
Confidence 34578999999999999999999633211100 112333333445555 6899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH-hh-----cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS-QK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~-~~-----~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++....+. ...+..+ .. .++|+++|+||+|+..
T Consensus 76 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 76 GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp CSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred CCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 999999999999999999999999987532222 2233333 22 5899999999999964
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=156.00 Aligned_cols=122 Identities=16% Similarity=0.025 Sum_probs=82.2
Q ss_pred CCC-CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeee-EEEeecccC---
Q psy5021 1 MKN-KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV-SIFWEVNKF--- 75 (1021)
Q Consensus 1 m~~-~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~-~~~~~~~~~--- 75 (1021)
|.. +.++..+|+++|+.|+|||||+++|+...-... ...|+..... ...+..++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~~ 62 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSK--------------------FITTVGIDFREKRVVYRANGPDG 62 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------------CCCCCSEEEEEEEEEECTTSCCC
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcC--------------------cccccceeeeeEEEEEecCCccc
Confidence 443 456678999999999999999999975321100 0011111111 111111122
Q ss_pred ------ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh----cCCCEEEEEeCcCCC
Q psy5021 76 ------KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 76 ------~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~----~~~p~iiviNK~D~~ 142 (1021)
.+.+++|||||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp SSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred ccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 56899999999999999999999999999999999876444332222 33322 589999999999985
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-16 Score=159.66 Aligned_cols=111 Identities=17% Similarity=0.087 Sum_probs=82.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|+.|+|||||+++|....-. . ...|+......+.+. ++.+++|||||+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~--~-------------------~~~t~~~~~~~~~~~----~~~~~i~Dt~G~ 77 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA--T-------------------LQPTWHPTSEELAIG----NIKFTTFDLGGH 77 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC--C-------------------CCCCCSCEEEEEEET----TEEEEEEECCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--c-------------------cccCCCCCeEEEEEC----CEEEEEEECCCC
Confidence 458999999999999999999743211 0 012333334455666 689999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
.+|...+..+++.+|++++|+|++++...+.. ..+..+. ..++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 78 IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp GGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 99988888889999999999999987543332 2233332 35799999999999975
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-16 Score=162.35 Aligned_cols=122 Identities=18% Similarity=0.133 Sum_probs=84.8
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|..+.++..+|+++|+.|+|||||+++|+..... .+...+++.......+.+. +..+.++
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~ 61 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFS------------------GSYITTIGVDFKIRTVEIN--GEKVKLQ 61 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---------------------CCTTTBSEEEEEEEEEET--TEEEEEE
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCC------------------CccCCCceeEEEEEEEEEC--CEEEEEE
Confidence 4445677899999999999999999999531110 0112234444444444444 3347899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh--cCCCEEEEEeCcCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~--~~~p~iiviNK~D~~ 142 (1021)
+|||||+.+|...+..+++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+.
T Consensus 62 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 62 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp EEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred EEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 999999999998889999999999999999986444443333 22322 358999999999975
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-16 Score=157.14 Aligned_cols=113 Identities=16% Similarity=0.093 Sum_probs=82.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...- .. ...|+......+.+. ++.+.+||||
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~-------------------~~~t~~~~~~~~~~~----~~~~~i~Dt~ 73 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV--VH-------------------TSPTIGSNVEEIVIN----NTRFLMWDIG 73 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC--EE-------------------EECCSSSSCEEEEET----TEEEEEEEES
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC--Cc-------------------cCCcCceeeEEEEEC----CEEEEEEECC
Confidence 3457899999999999999999974321 00 011222222345555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++....+. ...|..+. ..++|+++|+||+|+..
T Consensus 74 G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 74 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp SSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 999999888999999999999999998744332 33344433 36899999999999864
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=156.87 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=85.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
..+...+|+++|+.|+|||||+++|+....... ...+++.......+.+. +..+.+.+||
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~i~D 71 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTES------------------YISTIGVDFKIRTIELD--GKTIKLQIWD 71 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSC------------------CCCCSSEEEEEEEEEET--TEEEEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCC------------------CCCcccceEEEEEEEEC--CEEEEEEEEE
Confidence 345678999999999999999999974322111 11233333333344443 3357899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~~ 143 (1021)
|||+.+|...+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+..
T Consensus 72 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 72 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp ECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 999999999999999999999999999985433322223 3332 34789999999999864
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-16 Score=158.60 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=83.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+... .. ++ ..|+......+.+. ++.+++||||
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~------------~~-------~~t~~~~~~~~~~~----~~~~~~~Dt~ 70 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD------------TI-------SPTLGFNIKTLEHR----GFKLNIWDVG 70 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS------------SC-------CCCSSEEEEEEEET----TEEEEEEEEC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC------------cc-------cccCccceEEEEEC----CEEEEEEECC
Confidence 456789999999999999999996422 11 00 11223333345555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh----cCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK----YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~----~~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++++|+|+++...... ...+..... .++|+++|+||+|+...
T Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 71 GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp CSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 999998888889999999999999988644333 233333332 57999999999999653
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-16 Score=162.79 Aligned_cols=122 Identities=18% Similarity=0.132 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|....+...+|+++|+.|+|||||+++|+........ ...++....... +..++..+.+.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~--~~~~~~~~~~~ 60 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------------------KATIGADFLTKE--VMVDDRLVTMQ 60 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC------------------CCCCSEEEEEEE--EESSSCEEEEE
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC------------------CCcccceEEEEE--EEECCEEEEEE
Confidence 5445567889999999999999999999754321110 111222222222 22234457899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhh-------cCCCEEEEEeCcCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQK-------YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~-------~~~p~iiviNK~D~~ 142 (1021)
||||||+.+|...+..+++.+|++|+|+|++++........|. .+.. .++|+++|+||+|+.
T Consensus 61 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 9999999999888888999999999999998764433333332 2211 478999999999986
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=154.06 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=80.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-... +. .|+.... ...+..++..+.+++||||
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-------------~~-------~t~~~~~-~~~~~~~~~~~~l~i~Dt~ 74 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDD-------------YD-------PTIEDSY-LKHTEIDNQWAILDVLDTA 74 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSC-------------CC-------TTCCEEE-EEEEEETTEEEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCC-------------CC-------CCcccee-EEEEEeCCcEEEEEEEECC
Confidence 3567899999999999999999974321100 00 0111111 1112223345678889999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-----HHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-----ETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-----~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|+.+|......+++.+|++++|+|+++...... ..+.+.....++|+++|+||+|+..
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 75 GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp SCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred CchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 999999999999999999999999998632222 2222333457899999999999853
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-16 Score=158.60 Aligned_cols=123 Identities=20% Similarity=0.148 Sum_probs=64.2
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|....+...+|+++|+.|+|||||+++|+..... .+...+++.......+.+. +..+.++
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~--~~~~~~~ 60 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFN------------------STFISTIGIDFKIRTIELD--GKRIKLQ 60 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------------------------CHHHHHCEEEEEEEEEET--TEEEEEE
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCC------------------CCCCCcccceeEEEEEEEC--CEEEEEE
Confidence 5444567889999999999999999999632110 1122233333333333333 3358899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~~ 143 (1021)
+|||||+.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 61 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp EEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred EEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 999999999988888899999999999999885433332223 33333 4789999999999863
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-16 Score=168.73 Aligned_cols=111 Identities=15% Similarity=0.206 Sum_probs=87.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
++++|+++|++|+|||||+++|+... ...| ..+|+|+......+.|. ++.+++|||||
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~---~~~~---------------~~~~~t~~~~~~~~~~~----~~~~~l~DtpG 59 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLR---QHVG---------------NWPGVTVEKKEGIMEYR----EKEFLVVDLPG 59 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTC---EEEE---------------ECTTSSCEEEEEEEEET----TEEEEEEECCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCC---cccC---------------CCCCeEEEeeEEEEEEC----CceEEEEeCCC
Confidence 36899999999999999999996321 1211 23467887777778887 78899999999
Q ss_pred CCCcHH------HHHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcC-CCEEEEEeCcCC
Q psy5021 87 HVDFTI------EVERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYK-VPKMIFVNKMDR 141 (1021)
Q Consensus 87 ~~~f~~------~~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~-~p~iiviNK~D~ 141 (1021)
+.+|.. .+..++ ..+|++++|+|++.+ .+....+.++...+ +|+++|+||+|+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl 121 (271)
T 3k53_A 60 IYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDL 121 (271)
T ss_dssp CSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHH
T ss_pred ccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhc
Confidence 998865 333444 579999999999885 45566677777778 999999999996
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-16 Score=159.43 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=115.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++... ........|.+.......+......+.||||||+++|..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 87 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHF--------------DHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS 87 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCC--------------CTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCC--------------CCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh
Confidence 457889999999999999999997431 111223345665555555555567899999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++|+|+|+++.... ....++..+... ++| +++|+||+|+.+.... ..+++.++++..+
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~v---~~~~~~~~~~~~~---- 159 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDLSDIREV---PLKDAKEYAESIG---- 159 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHTTT----
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC----
Confidence 999999999999999999875443 334445555544 566 9999999999752211 1133444555444
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||+++ .|++++++.|.+.++
T Consensus 160 -~~~~~~Sa~~~-----------~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 160 -AIVVETSAKNA-----------INIEELFQGISRQIP 185 (192)
T ss_dssp -CEEEECBTTTT-----------BSHHHHHHHHHHTCC
T ss_pred -CEEEEEeCCCC-----------cCHHHHHHHHHHHHH
Confidence 57999999987 489999999988664
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-16 Score=155.95 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=83.0
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+......... ...|.+...... .+ ++..+.+.+|||
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~--~~--~~~~~~~~l~Dt 71 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCP----------------HTIGVEFGTRII--EV--SGQKIKLQIWDT 71 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCT----------------TSCCCCEEEEEE--EE--TTEEEEEEEEEC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCC----------------CccceEEEEEEE--EE--CCeEEEEEEEEC
Confidence 4567899999999999999999997543211100 011222222222 22 233678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|++++........| ..+. ..++|+++|+||+|+.
T Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp TTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999999999999999999999999986443333333 2222 3578999999999984
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=155.09 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=71.5
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|..+.++..+|+++|+.|+|||||+++|+...-... ....++.......+.+. ++....+.
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~-~~~~~~~~ 61 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ------------------YKATIGADFLTKEVTVD-GDKVATMQ 61 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTT------------------C---CCCSCEEEEECCS-SSCCEEEE
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcc------------------cCCccceEEEEEEEEEc-CCcEEEEE
Confidence 544456788999999999999999999975321100 01111111111222221 13457899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh-------hcCCCEEEEEeCcCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ-------KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~-------~~~~p~iiviNK~D~~ 142 (1021)
+|||||+.+|...+..+++.+|++|+|+|+++.........| ..+. ..++|+++|+||+|+.
T Consensus 62 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp EECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred EEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 999999999999999999999999999999886443333333 2222 1678999999999985
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-16 Score=173.02 Aligned_cols=155 Identities=22% Similarity=0.264 Sum_probs=114.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.++++|.+|+|||||+|+|++... ......|+|++.....++..+..+.||||||+.+|..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~----------------~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ----------------RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE----------------EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcccc
Confidence 457889999999999999999998532 1223358888888888888889999999999887641
Q ss_pred ----------HHHHH--hhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 730 ----------NMITG--AAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 730 ----------~~~~~--~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
.+..+ ...+|++++|+|+++ ......++..+...++| +|+|+||+|+.+.... . .....+.
T Consensus 66 ~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~Dl~~~~~~-~---~~~~~l~ 138 (274)
T 3i8s_A 66 ISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIP-CIVALNMLDIAEKQNI-R---IEIDALS 138 (274)
T ss_dssp ----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCC-EEEEEECHHHHHHTTE-E---ECHHHHH
T ss_pred ccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCC-EEEEEECccchhhhhH-H---HHHHHHH
Confidence 12222 268999999999986 34455566677778999 9999999998652210 0 1122233
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+.++ ++++++||++| .|+++|+++|.+.++
T Consensus 139 ~~lg-----~~~i~~SA~~g-----------~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 139 ARLG-----CPVIPLVSTRG-----------RGIEALKLAIDRYKA 168 (274)
T ss_dssp HHHT-----SCEEECCCGGG-----------HHHHHHHHHHHTCCC
T ss_pred HhcC-----CCEEEEEcCCC-----------CCHHHHHHHHHHHHh
Confidence 3334 47999999988 489999999988664
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-15 Score=150.59 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=79.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|+.|+|||||+++|+........ ...++.......+.+ ++..+.+.+|||||+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENK------------------EPTIGAAFLTQRVTI--NEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTC------------------CCCSSEEEEEEEEEE--TTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCC------------------CCccceeEEEEEEEE--CCEEEEEEEEECCCCh
Confidence 57999999999999999999753221000 011122111122222 2336789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
+|...+..+++.+|++++|+|+++.........| ..+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp GGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 9999999999999999999999986443333333 2332 2478999999999985
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-16 Score=158.36 Aligned_cols=161 Identities=15% Similarity=0.164 Sum_probs=111.3
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 75 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFV--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 75 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCT--------------TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC--------------CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh
Confidence 34577899999999999999999974311 0111222333333333333334578999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++... ....+++..+... ++| +++|+||+|+.+..... .+++.++++..+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 148 (181)
T 2efe_B 76 SLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKVT---AEDAQTYAQENG--- 148 (181)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT---
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccccCC---HHHHHHHHHHcC---
Confidence 999999999999999999987543 3334555555554 556 89999999997532111 123444444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .++++++++|.+.++
T Consensus 149 --~~~~~~Sa~~g-----------~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 149 --LFFMETSAKTA-----------TNVKEIFYEIARRLP 174 (181)
T ss_dssp --CEEEECCSSSC-----------TTHHHHHHHHHHTCC
T ss_pred --CEEEEEECCCC-----------CCHHHHHHHHHHHHH
Confidence 47999999987 389999999988664
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-16 Score=157.16 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=108.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 67 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFA--------------ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--------------TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh
Confidence 3467788999999999999999974311 11112234444334444433345789999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++++|+|+++....+. ..++..+... ++| +++|+||+|+.+.....+...++..++.+..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~---- 142 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGERKVAREEGEKLAEEKG---- 142 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT----
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccccCCCHHHHHHHHHHcC----
Confidence 99999999999999999987543322 3333333332 566 88999999987531100011122333444343
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .|+++++++|.+.++
T Consensus 143 -~~~~~~Sa~~~-----------~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 143 -LLFFETSAKTG-----------ENVNDVFLGIGEKIP 168 (170)
T ss_dssp -CEEEECCTTTC-----------TTHHHHHHHHHTTSC
T ss_pred -CEEEEEeCCCC-----------CCHHHHHHHHHHHHh
Confidence 47999999987 389999999987553
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-16 Score=154.09 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=80.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|+.|+|||||+++|+...-.... +...|.+.......+ ++..+.+++|||||
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~~~~~~~D~~G 64 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ----------------ESTIGAAFLTQTVCL----DDTTVKFEIWDTAG 64 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC----------------CCCSSEEEEEEEEEE----TTEEEEEEEEEECC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceEEEEEEEEE----CCEEEEEEEEeCCC
Confidence 4568999999999999999999753211000 011122222222222 23367899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
+.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp SGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred cHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 999999999999999999999999876443333333 33332 478999999999984
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.6e-16 Score=153.59 Aligned_cols=117 Identities=17% Similarity=0.109 Sum_probs=81.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... ....|.+.... .+.+ ++..+.+.+||||
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~--~~~~--~~~~~~~~~~Dt~ 63 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNI----------------NPTIGASFMTK--TVQY--QNELHKFLIWDTA 63 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTC----------------CCCCSEEEEEE--EEEE--TTEEEEEEEEEEC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCC----------------CCceeEEEEEE--EEEE--CCeEEEEEEEcCC
Confidence 34578999999999999999999753211000 01112222222 1222 2336789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 64 GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp CSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred CchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 9999999999999999999999999986544443333 3333 3468899999999985
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-16 Score=161.39 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=85.1
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|....++..+|+++|+.|+|||||+++|+...-... ....++.......+.+. +..+.+.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~--~~~~~~~ 60 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTND------------------YISTIGVDFKIKTVELD--GKTVKLQ 60 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTT------------------CCCSSCCCEEEEEEEET--TEEEEEE
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCC------------------CCCcccceeEEEEEEEC--CEEEEEE
Confidence 544456778999999999999999999975321100 01122222222233332 3357899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~~ 143 (1021)
+|||||+.+|...+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+..
T Consensus 61 l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp EECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 999999999998889999999999999999986544443333 2332 24689999999999864
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=157.00 Aligned_cols=118 Identities=17% Similarity=0.081 Sum_probs=82.4
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|+.|+|||||+++|+........ . ...|.+.....+.+ ++..+.+++|||
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-------------~---~t~~~~~~~~~~~~----~~~~~~~~l~Dt 78 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAF-------------V---STVGIDFKVKTVYR----HDKRIKLQIWDT 78 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-------------C---CCCCCEEEEEEEEE----TTEEEEEEEEEC
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCc-------------C---CceeEEEEEEEEEE----CCeEEEEEEEeC
Confidence 455789999999999999999999753321110 0 01122332222222 233678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+.
T Consensus 79 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp CSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 99999998899999999999999999875433332 23334433 479999999999984
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-16 Score=155.02 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=111.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.... ...+...|.+.......+...+..+.+|||||+++|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 70 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFH--------------EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--------------TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh
Confidence 4567889999999999999999974311 11223345555444444444456789999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++++|+|+++... .....++..+... ++| +++|+||+|+.+..... .++..++++..+
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 142 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLANKRAVD---FQEAQSYADDNS---- 142 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT----
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccccC---HHHHHHHHHHcC----
Confidence 99999999999999999987543 2334444444443 455 88889999987522110 123333444333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .|+++++++|.+.++
T Consensus 143 -~~~~~~Sa~~g-----------~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 -LLFMETSAKTS-----------MNVNEIFMAIAKKLP 168 (170)
T ss_dssp -CEEEECCTTTC-----------TTHHHHHHHHHHTSC
T ss_pred -CeEEEEeCCCC-----------CCHHHHHHHHHHHHh
Confidence 57999999987 389999999987653
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.5e-16 Score=157.86 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=82.7
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|+.|+|||||+++|+..... .+....++.......+.+. +..+.+.+|||
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~--~~~~~l~l~Dt 82 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFC------------------EACKSTVGVDFKIKTVELR--GKKIRLQIWDT 82 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------------------------CCTTEEEEEEEEEET--TEEEEEEEEEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCC------------------cCCCCccceeEEEEEEEEC--CeEEEEEEEeC
Confidence 455678999999999999999999532110 0112223333333333333 33578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+.
T Consensus 83 ~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 83 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999999999999999999999999986544443333 2222 3479999999999984
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-15 Score=155.73 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=80.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+...-. .+....++.......+.+. +..+.+.+|||
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt 85 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFS------------------ERQGSTIGVDFTMKTLEIQ--GKRVKLQIWDT 85 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------CEEEEEEEET--TEEEEEEEECC
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCC------------------CCCCCCcceEEEEEEEEEC--CEEEEEEEEEC
Confidence 456789999999999999999999742210 0011111122222233333 33578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+.. ..+..+.. .++|+++|+||+|+.
T Consensus 86 ~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp TTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 99999999999999999999999999875433222 22233332 578999999999985
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=155.59 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=78.1
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+...-... + ....|.+.... .+.+ ++..+.++||||
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------~---~~t~~~~~~~~--~~~~--~~~~~~l~i~Dt 84 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFREN-------------I---SATLGVDFQMK--TLIV--DGERTVLQLWDT 84 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC--------------------------CEEE--EEEE--TTEEEEEEEEEC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCcc-------------C---CCCccceeEEE--EEEE--CCEEEEEEEEEC
Confidence 45678999999999999999999974321100 0 01112222222 2222 233678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+.
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 99999999999999999999999999876544433333 2232 2479999999999974
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=156.08 Aligned_cols=119 Identities=20% Similarity=0.172 Sum_probs=82.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|+.|+|||||+++|+...-.... . ...|.+.... .+.+ ++....+.+|||
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------~---~t~~~~~~~~--~~~~--~~~~~~~~l~Dt 64 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAF-------------V---STVGIDFKVK--TIYR--NDKRIKLQIWDT 64 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCC-------------C---CCCSEEEEEE--EEEE--TTEEEEEEEEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-------------C---CccceeEEEE--EEEE--CCeEEEEEEEEC
Confidence 456789999999999999999999743211000 0 0012222222 1222 233678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~~ 143 (1021)
||+.+|...+..+++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 65 AGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp CCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred CCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 99999999999999999999999999876443333333 33333 4799999999999853
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-16 Score=155.74 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=81.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+.-+|+++|+.|+|||||+++|....- ..+....++.......+.+. ++..+.+++||||
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~Dt~ 64 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF------------------GKQYKQTIGLDFFLRRITLP-GNLNVTLQIWDIG 64 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT------------------THHHHHTTTSSEEEEEEEET-TTEEEEEEEEECT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC------------------CCCCCCceeEEEEEEEEEeC-CCCEEEEEEEECC
Confidence 3457899999999999999999974321 01122223322223334443 1124789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh-----cCCC-EEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK-----YKVP-KMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~-----~~~p-~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .+.| +++|+||+|+.
T Consensus 65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 65 GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp TCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred CCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 9999999999999999999999999886443333333 33332 2667 68899999985
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=152.07 Aligned_cols=116 Identities=17% Similarity=0.102 Sum_probs=79.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+++|+.|+|||||+++|+...-.. +....++.......+.+ ++..+.+.+|||||
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G 61 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNP------------------SFITTIGIDFKIKTVDI--NGKKVKLQIWDTAG 61 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------------------------CCEEEEEEES--SSCEEEEEEECCTT
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCC------------------CCCCccceeEEEEEEEE--CCEEEEEEEEeCCC
Confidence 46789999999999999999997432110 01112222222222222 34457899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
+.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp GGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred ChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 999998899999999999999999875433222223 33332 478999999999984
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.8e-16 Score=153.52 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=78.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|++|+|||||+++|+...-.... . .|+.... ...+..++..+.+.+|||||+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------~-------~~~~~~~-~~~~~~~~~~~~~~l~D~~G~ 61 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY-------------D-------PTIEDFY-RKEIEVDSSPSVLEILDTAGT 61 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC-------------C-------TTCCEEE-EEEEEETTEEEEEEEEECCCT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccC-------------C-------CCcceeE-EEEEEECCEEEEEEEEECCCc
Confidence 358999999999999999999753211100 0 0111000 111222333567999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhH-H----HHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQT-E----TVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~----~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++++|+|+++....+. . .+++.+...++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 9999999999999999999999987533222 2 22222333589999999999974
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=157.45 Aligned_cols=112 Identities=18% Similarity=0.128 Sum_probs=77.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|+.|+|||||+++|.... .. . ...|+......+.+. +..+++|||||
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~--~~------------~-------~~~t~~~~~~~~~~~----~~~l~i~Dt~G 78 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDR--LG------------Q-------HVPTLHPTSEELTIA----GMTFTTFDLGG 78 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------------------------CCCCCSCEEEEET----TEEEEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC--CC------------c-------cCCCCCceeEEEEEC----CEEEEEEECCC
Confidence 34679999999999999999994211 00 0 112333334455666 68999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
+.+|...+..+++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+..
T Consensus 79 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 79 HIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp ----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred cHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 999988888899999999999999886433322 2223332 35799999999999975
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=151.85 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=79.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++..+|+++|+.|+|||||+++|+...-... ...|+........+..++..+.+.+||||
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~ 62 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKD--------------------YKKTIGVDFLERQIQVNDEDVRLMLWDTA 62 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCC--------------------SSCCCSSSEEEEEEEETTEEEEEEEECCT
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCC--------------------CCCceEEEEEEEEEEECCEEEEEEEEcCC
Confidence 4567899999999999999999975321100 00111111111122222336789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh--cCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~--~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++++|+|+++....+....| ..+.. .+.|+++|+||+|+.
T Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 63 GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp TGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred CcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 9999988899999999999999999875433222223 33322 489999999999985
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-16 Score=160.39 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=81.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++..+|+++|+.|+|||||+++|... ... ++ ..|+......+.+. ++.+++||||
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~------------~~-------~~t~~~~~~~~~~~----~~~~~~~Dt~ 74 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG--DVV------------TT-------VPTVGVNLETLQYK----NISFEVWDLG 74 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS--CCE------------EE-------CSSTTCCEEEEEET----TEEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC--CCC------------Cc-------CCCCceEEEEEEEC----CEEEEEEECC
Confidence 35678999999999999999999421 110 00 11222223345555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh----cCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK----YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~----~~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++|+|+|+++...... ...+..... .++|+++|+||+|+...
T Consensus 75 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp CSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 999998888888999999999999998643332 223333322 47999999999999654
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-16 Score=167.06 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=85.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|++|+|||||+++|..... ..+ ...|+|+......+.+. ++.+.+||||
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~---~~~---------------~~pg~tv~~~~~~~~~~----~~~~~l~Dtp 60 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQ---YVA---------------NWPGVTVEKKEGVFTYK----GYTINLIDLP 60 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCE---EEE---------------ECTTSCCEEEEEEEEET----TEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCC---ccc---------------CCCCceEEEEEEEEEEC----CeEEEEEECC
Confidence 3457899999999999999999963211 111 12477888777777776 7899999999
Q ss_pred CCCCcHH------HHHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCC
Q psy5021 86 GHVDFTI------EVERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 86 G~~~f~~------~~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~ 141 (1021)
|+.+|.. ....++ ..+|++++|+|+++. .....++.++...++|+++|+||+|+
T Consensus 61 G~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl 122 (258)
T 3a1s_A 61 GTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDE 122 (258)
T ss_dssp CCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred CcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCC
Confidence 9988863 123344 479999999999874 33445667778889999999999996
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.3e-16 Score=155.90 Aligned_cols=160 Identities=15% Similarity=0.068 Sum_probs=110.0
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC---eEEEEEecCChh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN---KHYAHVDCPGHA 725 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~---~~i~liDtpG~~ 725 (1021)
.+.+.+.++|.+++|||||+++|++... ........| .+.....+...+ ..+.+|||||++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~--------------~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF--------------GKQYKQTIG--LDFFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT--------------THHHHHTTT--SSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC--------------CCCCCCcee--EEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence 3567789999999999999999997431 111222233 333344455544 678999999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc-----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV-----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~-----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
+|...+..+++.+|++++|+|+++.... ....++..+... +.|++++|+||+|+.+..... .++...+.+.
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---~~~~~~~~~~ 144 (178)
T 2hxs_A 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK---PEKHLRFCQE 144 (178)
T ss_dssp TTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC---HHHHHHHHHH
T ss_pred cccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC---HHHHHHHHHH
Confidence 9988889999999999999999875432 223344444432 667688999999997522111 1233344444
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.+ ++++++||++| .|+++++++|.+.+.
T Consensus 145 ~~-----~~~~~~Sa~~~-----------~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 145 NG-----FSSHFVSAKTG-----------DSVFLCFQKVAAEIL 172 (178)
T ss_dssp HT-----CEEEEECTTTC-----------TTHHHHHHHHHHHHT
T ss_pred cC-----CcEEEEeCCCC-----------CCHHHHHHHHHHHHH
Confidence 44 47899999987 388999999877553
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=154.55 Aligned_cols=159 Identities=16% Similarity=0.204 Sum_probs=110.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC------
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG------ 723 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG------ 723 (1021)
+...+.++|.+++|||||+++|++... ........|.|.+.....+ +..+.+|||||
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~ 84 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKN--------------LARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKV 84 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEEE---TTTEEEEECCCBCCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--------------ccccCCCCCceeeEEEEEE---CCcEEEEECCCCCcccc
Confidence 457889999999999999999997431 1112233455555444333 34699999999
Q ss_pred ----hhhhHHHHHHHhhhC---CEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh
Q psy5021 724 ----HADYIKNMITGAAQM---DGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL 796 (1021)
Q Consensus 724 ----~~~~~~~~~~~~~~a---D~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~ 796 (1021)
++.|...+..++..+ |++++|+|++++...+..+.+.++...++| +++|+||+|+.+..+ .+...+++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~-~~~~~~~~~~~ 162 (195)
T 1svi_A 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGK-WDKHAKVVRQT 162 (195)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGG-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChHH-HHHHHHHHHHH
Confidence 777877777777766 999999999998877777777777778888 999999999986332 33333444443
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+... ...+++++||++| .|+++++++|.+.+
T Consensus 163 ~~~~----~~~~~~~~Sa~~~-----------~gv~~l~~~l~~~l 193 (195)
T 1svi_A 163 LNID----PEDELILFSSETK-----------KGKDEAWGAIKKMI 193 (195)
T ss_dssp HTCC----TTSEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred Hccc----CCCceEEEEccCC-----------CCHHHHHHHHHHHh
Confidence 3211 2368999999987 38999999887643
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.7e-16 Score=152.11 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=110.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh------
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD------ 726 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~------ 726 (1021)
.+.++|.+++|||||+++|.+.... ..+...+.|.+.....+...+..+.+|||||+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 67 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSA---------------VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEK 67 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSCCH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCee---------------eccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHH
Confidence 4678899999999999999974311 1223345666777777778888999999999887
Q ss_pred -hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 727 -YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 727 -~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+...+..++..+|++++|+|++++..........++...++| +++|+||+|+.+.+ +++.++. .+++
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-------~~~~~~~-~~~~--- 135 (161)
T 2dyk_A 68 KIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDDPKHE-------LYLGPLY-GLGF--- 135 (161)
T ss_dssp HHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCSGGGG-------GGCGGGG-GGSS---
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECcccccch-------HhHHHHH-hCCC---
Confidence 556677788999999999999988776666677777777888 99999999997632 2223333 3333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++| .|+++++++|.+.+
T Consensus 136 -~~~~~~Sa~~~-----------~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 136 -GDPIPTSSEHA-----------RGLEELLEAIWERL 160 (161)
T ss_dssp -CSCEECBTTTT-----------BSHHHHHHHHHHHC
T ss_pred -CCeEEEecccC-----------CChHHHHHHHHHhC
Confidence 25899999987 48999999987755
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.3e-16 Score=159.59 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=82.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.++..+|+++|+.|+|||||+++|+...-... ....++++.....+.+ ++..+.+++||
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~--~~~~~~l~l~D 81 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG------------------QGATIGVDFMIKTVEI--NGEKVKLQIWD 81 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTT------------------CCCCCSEEEEEEEEEE--TTEEEEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCC------------------CCCccceeEEEEEEEE--CCEEEEEEEEE
Confidence 345678999999999999999999975321100 0111222222223333 23357899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|||+.+|...+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 82 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 82 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp ECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999999999999999999999999999875433322233 2222 3478999999999984
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=151.22 Aligned_cols=111 Identities=21% Similarity=0.200 Sum_probs=77.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|++|+|||||+++|..... ..+ ...|+|+......+.+. +..+.+|||||+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~---~~~---------------~~~~~t~~~~~~~~~~~----~~~l~i~Dt~G~ 60 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV---YIG---------------NWPGVTVEKKEGEFEYN----GEKFKVVDLPGV 60 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS---SCC--------------------CCCCCEEEEEET----TEEEEEEECCCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe---ecc---------------CCCCcceeeeEEEEEEC----CcEEEEEECCCc
Confidence 46899999999999999999963211 000 12355555555556666 788999999999
Q ss_pred CCcH------HHHHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VDFT------IEVERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~------~~~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+|. .....+++ .+|++++|+|++.. ......+..+...++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 61 YSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp SCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred ccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 9885 22344444 79999999999862 223344455666789999999999973
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=154.19 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=77.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+...-... +.+ |..... ...+..++..+.+++|||
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-------------~~~-------t~~~~~-~~~~~~~~~~~~~~l~Dt 61 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDS-------------YDP-------TIENTF-TKLITVNGQEYHLQLVDT 61 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSC-------------CCT-------TCCEEE-EEEEEETTEEEEEEEEEC
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCC-------------CCC-------CccccE-EEEEEECCEEEEEEEEeC
Confidence 34578999999999999999999974321100 000 111111 111122333578899999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-----HHHHHhhcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-----VWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-----~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++++|+|+++........ +++.+...++|+++|+||+|+.
T Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 62 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp CCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred CCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 999999888888899999999999998743332222 2233334589999999999985
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=151.45 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=75.2
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+........ ....++.......+.+ ++..+.+++|||
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~~--~~~~~~~~~~Dt 67 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-----------------FISTVGIDFRNKVLDV--DGVKVKLQMWDT 67 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-----------------CCCCCSCEEEEEEEEE--TTEEEEEEEEEC
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCC-----------------cCCceeeEEEEEEEEE--CCEEEEEEEEeC
Confidence 355679999999999999999999753321110 0111222221112222 334578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~~ 143 (1021)
||+.+|...+..+++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+..
T Consensus 68 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp CCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred CCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 99999999999999999999999999876433332222 3332 26799999999999863
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=152.91 Aligned_cols=118 Identities=15% Similarity=0.113 Sum_probs=81.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+...... +..+.++.......+.+ ++....+.+|||
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt 63 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDT------------------QLFHTIGVEFLNKDLEV--DGHFVTMQIWDT 63 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----------------------CCSEEEEEEEEEE--TTEEEEEEEEEC
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCCceeeeEEEEEEEE--CCEEEEEEEEeC
Confidence 3456899999999999999999997432110 01112222222223333 233578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---h----cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---K----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~----~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++++|+|++++...+....| ..+. . .++|+++|+||+|+.
T Consensus 64 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp CCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred CCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 99999999999999999999999999986443332323 2221 1 678999999999985
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=152.16 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=77.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|+.|+|||||+++|+...-.... ..|+...... .+..++..+.+.+|||||+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------------~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~ 61 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY--------------------IPTVEDTYRQ-VISCDKSICTLQITDTTGS 61 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSC--------------------CCCSCEEEEE-EEEETTEEEEEEEEECCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------------CCCccccEEE-EEEECCEEEEEEEEECCCc
Confidence 468999999999999999999742211000 0011111100 1111233578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHHhh-----cCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQSQK-----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~~~-----~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++++|+|+++..... ....+..+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp SSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred hhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 999999999999999999999998753222 2333443333 379999999999974
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.3e-16 Score=155.46 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=108.6
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
-+.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFM--------------ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR 78 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC--------------SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh
Confidence 34578899999999999999999974311 1112223444444433333334578999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+.+.... ..+++.++++..+
T Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 151 (179)
T 1z0f_A 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDV---TYEEAKQFAEENG--- 151 (179)
T ss_dssp HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT---
T ss_pred hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC---
Confidence 999999999999999999987543222 233333443 3566 9999999999752211 1123444444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++| .|+++++++|.+.
T Consensus 152 --~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 152 --LLFLEASAKTG-----------ENVEDAFLEAAKK 175 (179)
T ss_dssp --CEEEECCTTTC-----------TTHHHHHHHHHHH
T ss_pred --CEEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 57999999987 3888999888654
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=154.66 Aligned_cols=115 Identities=19% Similarity=0.197 Sum_probs=80.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|+.|+|||||+++|+....... ....+++......+.+. +..+.+.+|||||+
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~Dt~G~ 73 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNT------------------YQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQ 73 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSS------------------CCCCCSEEEEEEEEEET--TEEEEEEEEEECCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC------------------CCCceeeEEEEEEEEEC--CeEEEEEEEECCCc
Confidence 46899999999999999999974322111 01122332222233332 33578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++|+|+|+++.........| ..+. ..++|+++|+||+|+.
T Consensus 74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 74 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp GGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 99999999999999999999999875332222222 2222 3579999999999984
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=154.83 Aligned_cols=119 Identities=16% Similarity=0.149 Sum_probs=82.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+...-.... .. |+.... ...+..++..+.+++|||
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~------~~--------------t~~~~~-~~~~~~~~~~~~~~i~D~ 73 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEY------VP--------------TVFDHY-AVSVTVGGKQYLLGLYDT 73 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSC------CC--------------SSCCCE-EEEEESSSCEEEEEEECC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCC------CC--------------ccccee-EEEEEECCEEEEEEEEEC
Confidence 345679999999999999999999854211000 00 111111 112222344578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhhc--CCCEEEEEeCcCCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQKY--KVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~~--~~p~iiviNK~D~~~~ 144 (1021)
||+.+|...+..+++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+...
T Consensus 74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 74 AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp CCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred CCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 999999988889999999999999998764333322 23 444443 8999999999999643
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=150.09 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=78.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|+.|+|||||+++|+...-... + ..|+.... ...+..++..+.+.+|||||+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~-------------~-------~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~ 61 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEK-------------Y-------DPTIEDSY-RKQVEVDCQQCMLEILDTAGT 61 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCS-------------C-------CCCSEEEE-EEEEESSSCEEEEEEEEECSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC-------------C-------CCCccceE-EEEEEECCEEEEEEEEECCCh
Confidence 35899999999999999999975321100 0 01111111 112222344678999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH----hhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~----~~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++++|+|+++...... ...+..+ ...++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp CSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 9999999999999999999999987432222 1222222 23589999999999985
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=152.72 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=76.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+.-+|+++|+.|+|||||+++|+......... +.+.......+.+ ++..+.+++|||||
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------------------~t~~~~~~~~~~~--~~~~~~~~i~Dt~G 61 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYD-------------------PTIEDSYRKQVVI--DGETCLLDILDTAG 61 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCC-------------------TTCCEEEEEEEEE--TTEEEEEEEEECCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCC-------------------CCchheEEEEEEE--CCcEEEEEEEECCC
Confidence 34589999999999999999997533211100 0011111111222 23356789999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH----hhcCCCEEEEEeCcCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS----QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~~ 143 (1021)
+.+|...+..+++.+|++++|+|+++.........| ..+ ...++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp C---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 999999999999999999999999875433332222 222 235799999999999863
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=152.56 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=79.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
..|+++|++|+|||||+++|......... ...+.|.......+.+. +..+.+|||||+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~-----------------~~~~~t~~~~~~~~~~~----~~~~~l~Dt~G~~ 63 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVT-----------------DIAGTTRDVLREHIHID----GMPLHIIDTAGLR 63 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCC-----------------SSTTCCCSCEEEEEEET----TEEEEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceee-----------------CCCCceeceeeEEEEEC----CeEEEEEECCCcc
Confidence 47999999999999999999743321111 11233443333445555 6679999999997
Q ss_pred CcHHH--------HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 89 DFTIE--------VERSLRVLDGAVIIICASSGIQPQTETVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~--------~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
++... ...+++.+|++++|+|+++.........|..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 64 EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp CCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 65311 2346789999999999998766555555555443 369999999999974
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=154.36 Aligned_cols=117 Identities=19% Similarity=0.172 Sum_probs=81.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+........ . ...|.+.... .+.+ ++..+.+.|||||
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------~---~t~~~~~~~~--~~~~--~~~~~~~~i~Dt~ 72 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL-------------A---ATIGVDFKVK--TISV--DGNKAKLAIWDTA 72 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-------------C---CCCSEEEEEE--EEEE--TTEEEEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccC-------------C---CccceEEEEE--EEEE--CCeEEEEEEEeCC
Confidence 34578999999999999999999753211000 0 0012222222 2222 2336789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh----cCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~----~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 73 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 73 GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp SSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred CchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 9999999999999999999999999876443333333 33333 478999999999984
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.5e-16 Score=153.95 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=112.7
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++... ........|.+.......+......+.+|||||+++|.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 69 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSF--------------DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR 69 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCC--------------CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCC--------------CCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh
Confidence 3557889999999999999999997431 11122334555555555554445678999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++++|+|+++....+. ..++..+... ++| +++|+||+|+.+..+... ++...+.+..+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~--- 142 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVREVME---RDAKDYADSIH--- 142 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGCCSCH---HHHHHHHHHTT---
T ss_pred cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECCccccccccCH---HHHHHHHHHcC---
Confidence 888899999999999999987544333 3444555544 345 888999999975322111 22333444333
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.+++++||+++ .|++++++.|.+.++
T Consensus 143 --~~~~~~Sa~~~-----------~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 --AIFVETSAKNA-----------ININELFIEISRRIP 168 (170)
T ss_dssp --CEEEECBTTTT-----------BSHHHHHHHHHHHCC
T ss_pred --CEEEEEeCCCC-----------cCHHHHHHHHHHHHh
Confidence 57999999987 389999999877553
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=151.37 Aligned_cols=117 Identities=17% Similarity=0.110 Sum_probs=74.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++..+|+++|+.|+|||||+++|+...-.... . .|+........+..++..+.+.+||||
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~------------------~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 63 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKH------------------I--TTLGASFLTKKLNIGGKRVNLAIWDTA 63 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSC------------------C--CCCSCEEEEEEEESSSCEEEEEEEECC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCC------------------C--CccceEEEEEEEEECCEEEEEEEEECC
Confidence 45578999999999999999999753211000 0 111111111223333446789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH---hhcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~---~~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++++|+|+++....+....| ..+ ...++|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 64 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp CC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred CcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 9999998888889999999999999876443333333 222 23579999999999985
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-16 Score=157.53 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=79.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+... ... ...|+......+.+. +..+.+||||
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~-------------------~~~t~~~~~~~~~~~----~~~~~i~Dt~ 70 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGE--VVT-------------------TKPTIGFNVETLSYK----NLKLNVWDLG 70 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSE--EEE-------------------ECSSTTCCEEEEEET----TEEEEEEEEC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--cCc-------------------cCCcCccceEEEEEC----CEEEEEEECC
Confidence 567899999999999999999995211 000 011222223345555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++++|+|+++....+. ...+.... ..++|+++|+||+|+...
T Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 71 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp ----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 999998888899999999999999988744332 23334433 367999999999998653
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=156.51 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=82.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.++..+|+++|+.|+|||||+++|+......... ...|.+.... .+..++....+.+||
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~----------------~t~~~~~~~~----~~~~~~~~~~~~i~D 80 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR----------------TTIGVEFSTR----TVMLGTAAVKAQIWD 80 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC----------------CCSSEEEEEE----EEEETTEEEEEEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC----------------CccceeEEEE----EEEECCEEEEEEEEe
Confidence 34567899999999999999999997533221110 0012222211 122223367899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
|||+.+|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+.
T Consensus 81 t~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp ESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred CCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 999999999999999999999999999875433322 23333332 478999999999985
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=156.20 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=79.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... ...++.......+.+ ++..+.+++||||
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~ 77 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT------------------EATIGVDFRERAVDI--DGERIKIQLWDTA 77 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC------------------CCCCSCCEEEEEEEE--TTEEEEEEEEECC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCCcceEEEEEEEEE--CCEEEEEEEEECC
Confidence 45689999999999999999999753221100 011111111122222 2335789999999
Q ss_pred CCCCcH-HHHHHHhhccCeEEEEEeCCCCCchhHHHHH-----HHHhhcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFT-IEVERSLRVLDGAVIIICASSGIQPQTETVW-----FQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~-~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-----~~~~~~~~p~iiviNK~D~~ 142 (1021)
|+.+|. ..+..+++.+|++|+|+|+++.........| +.+...++|+++|+||+|+.
T Consensus 78 G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 78 GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp CSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred CchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999988 7788889999999999999875332222222 22224579999999999984
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=150.12 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=75.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|+.|+|||||+++|+...-.... . ..+.......+.+ ++..+.+.+|||||
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----~--------------~t~~~~~~~~~~~--~~~~~~~~l~D~~G 61 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----E--------------PTKADSYRKKVVL--DGEEVQIDILDTAG 61 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-----C--------------TTCCEEEEEEEEE--TTEEEEEEEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCC-----C--------------CCcceEEEEEEEE--CCEEEEEEEEECCC
Confidence 3578999999999999999999753311000 0 0000111111222 23357899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH----hhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~ 142 (1021)
+.+|...+..+++.+|++++|+|+++.........| ..+ ...++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp ---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred cchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 999999999999999999999999875433222222 222 23489999999999985
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=154.79 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=106.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.... .... |+......+..++..+.+|||||+++|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV---------------HTSP----TIGSNVEEIVINNTRFLMWDIGGQESLRS 75 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE---------------EEEC----CSCSSCEEEEETTEEEEEEECCC----CG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC---------------cCcC----CCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 4678899999999999999999964311 0111 22222334556788999999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..++..+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+++ .+.+....+..
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~i----~~~~~~~~~~~ 149 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VAEI----SQFLKLTSIKD 149 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCC-HHHH----HHHHTGGGCCS
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCCCC-HHHH----HHHhChhhhcC
Confidence 88889999999999999998653 344445444443 3566 999999999975211 2222 22222211222
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
..++++++||++| .|+++++++|.+.++.+
T Consensus 150 ~~~~~~~~Sa~~g-----------~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 150 HQWHIQACCALTG-----------EGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp SCEEEEECBTTTT-----------BTHHHHHHHHHHHHCC-
T ss_pred CCcEEEEccCCCC-----------cCHHHHHHHHHHHHHHH
Confidence 3468999999987 38999999998765433
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=153.48 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=72.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++..+|+++|++|+|||||+++|......... ...|.+..... +.+ ++..+.+.+||||
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-----------------~~~~~~~~~~~--~~~--~~~~~~~~~~D~~ 60 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-----------------EQLGEDVYERT--LTV--DGEDTTLVVVDTW 60 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-----------------CCSSSSEEEEE--EEE--TTEEEEEEEECCC
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-----------------CccccceeEEE--EEE--CCEEEEEEEEecC
Confidence 34678999999999999999999632211000 11233332222 222 2335689999999
Q ss_pred CCCC--cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh----cCCCEEEEEeCcCCCC
Q psy5021 86 GHVD--FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~--f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~----~~~p~iiviNK~D~~~ 143 (1021)
|+.. +.......++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 61 g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp -------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred CCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 9988 555566677899999999999875433332 23334443 3799999999999863
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-16 Score=168.00 Aligned_cols=150 Identities=21% Similarity=0.212 Sum_probs=110.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH---
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK--- 729 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~--- 729 (1021)
+++++|.+|+|||||+|+|++.... .....|+|++.....+..++..+.||||||+.++..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~----------------v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~ 66 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQR----------------VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAE 66 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE----------------EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC----
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC----------------ccCCCCceEEEEEEEEEECCeEEEEEeCCCccccccccc
Confidence 5688999999999999999985321 223347888888888888899999999999987753
Q ss_pred -------HHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 730 -------NMITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 730 -------~~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
.+..++ ..+|++|+|+|+++ .......+..+...++| +|+|+||+|+.+.... . .....+.+.+
T Consensus 67 ~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl~~~~~~-~---~~~~~l~~~l 139 (256)
T 3iby_A 67 GISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDIAEHRGI-S---IDTEKLESLL 139 (256)
T ss_dssp --CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHHHHHTTC-E---ECHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhcCCcCCc-H---HHHHHHHHHc
Confidence 233444 78999999999986 33444455566667889 9999999998752211 0 1122222333
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+ ++++++||++| .|+++|+++|.+.
T Consensus 140 g-----~~vi~~SA~~g-----------~gi~el~~~i~~~ 164 (256)
T 3iby_A 140 G-----CSVIPIQAHKN-----------IGIPALQQSLLHC 164 (256)
T ss_dssp C-----SCEEECBGGGT-----------BSHHHHHHHHHTC
T ss_pred C-----CCEEEEECCCC-----------CCHHHHHHHHHhh
Confidence 4 57999999988 4899999999875
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=155.08 Aligned_cols=118 Identities=16% Similarity=0.082 Sum_probs=82.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|+.|+|||||+++|+...-..... ...|++.... .+..++..+.+.||||
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~----~~~~~~~~~~~~i~Dt 79 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV----------------STVGIDFKVK----TVYRHEKRVKLQIWDT 79 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE----------------EEETTTEEEE----EEEETTTTEEEEEECH
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccC----------------CCeeeEEEEE----EEEECCEEEEEEEEeC
Confidence 3456789999999999999999998543211100 0012222222 2222344788999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+.
T Consensus 80 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp HHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 9999999999999999999999999987533222 222333333 579999999999984
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-16 Score=153.87 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=103.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH-
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI- 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~- 728 (1021)
+...++++|.+++|||||+++|++.... .+...|+|++.....+..++..+.+|||||+++|.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 65 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVY----------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 65 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSS----------------CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCee----------------ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCC
Confidence 3467889999999999999999974311 11223556665566666778899999999998773
Q ss_pred -----HHHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 729 -----KNMITGAA--QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 729 -----~~~~~~~~--~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
.....+++ .+|++++|+|+++ ..+...++..+...++| +|+|+||+|+...... . .+...+.+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-~---~~~~~~~~~~~ 138 (165)
T 2wji_A 66 NSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGI-E---IDVDKLEKILG 138 (165)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCC-EEEEEECHHHHHHTTC-C---CCHHHHHHHHT
T ss_pred cchhHHHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCC-EEEEEEchHhccccCh-h---hHHHHHHHHhC
Confidence 22334443 7999999999986 23334455556667888 9999999998642110 0 01222333333
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++| +|++++++.|.+.+
T Consensus 139 -----~~~~~~SA~~~-----------~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 -----VKVVPLSAAKK-----------MGIEELKKAISIAV 163 (165)
T ss_dssp -----SCEEECBGGGT-----------BSHHHHHHHHHHHT
T ss_pred -----CCEEEEEcCCC-----------CCHHHHHHHHHHHh
Confidence 46899999988 48999999887644
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=152.73 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=110.0
Q ss_pred CcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCC
Q psy5021 646 STDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPG 723 (1021)
Q Consensus 646 ~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG 723 (1021)
...++.+.+.++|.+++|||||+++|++.... .....+++.+.....+..++ ..+.+|||||
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G 72 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCC----------------SSCCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeEEEEEEEEECCeEEEEEEEECCC
Confidence 34456688999999999999999999964311 11122334444444455555 4788999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
+++|...+..++..+|++++|+|+++... .....++..+.. .++| +++|+||+|+.+..... ..+...+++.
T Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~ 148 (179)
T 2y8e_A 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVS---TEEGERKAKE 148 (179)
T ss_dssp SGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCSC---HHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccCcCC---HHHHHHHHHH
Confidence 99999988899999999999999987433 223334433333 2566 89999999997532211 1222333333
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.+ ++++++||+++ .++++++++|.+.++
T Consensus 149 ~~-----~~~~~~Sa~~~-----------~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 149 LN-----VMFIETSAKAG-----------YNVKQLFRRVAAALP 176 (179)
T ss_dssp HT-----CEEEEEBTTTT-----------BSHHHHHHHHHHTCC
T ss_pred cC-----CeEEEEeCCCC-----------CCHHHHHHHHHHHHh
Confidence 33 57999999987 389999999987654
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=176.55 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=68.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+|+|++|+|||||+|+|+.....+. ....|+|.+.....+.+. ++.++||||||+.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~v-----------------s~~~gtT~d~~~~~i~~~----g~~l~liDT~G~~ 292 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIV-----------------SHMPGTTRDYIEECFIHD----KTMFRLTDTAGLR 292 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------------CEEEEET----TEEEEEEC-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccc-----------------CCCCCceEEEEEEEEEEC----CeEEEEEECCCCC
Confidence 3599999999999999999964322211 123466776666667777 7899999999998
Q ss_pred CcHHHHH--------HHhhccCeEEEEEeCCCCCch----hHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVE--------RSLRVLDGAVIIICASSGIQP----QTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~--------~~l~~~D~~ilvvda~~g~~~----~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
+|...+. .+++.+|++|+|+|++++... ....+++.+. ++|+++|+||+|+...
T Consensus 293 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 293 EAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp ---------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred cchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 8765443 367889999999999998776 4444444443 7999999999999754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-15 Score=145.20 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=77.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|+.|+|||||+++|+........ . .|+.... ...+..++..+.+.+|||||+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----~---------------~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC-----D---------------PTIEDSY-RKQVVIDGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC-----C---------------TTCCEEE-EEEEEETTEEEEEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc-----C---------------CccceEE-EEEEEECCEEEEEEEEECCCch
Confidence 47999999999999999999753211100 0 0111110 1111222346789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
+|...+..+++.+|++++|+|+++........ .+..+. ..++|+++++||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 99999999999999999999998754322222 223332 23799999999999864
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=156.37 Aligned_cols=118 Identities=16% Similarity=0.091 Sum_probs=81.1
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+........ ....|.+... ..+.+ ++..+.+++|||
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~--~~~~~--~~~~~~~~i~Dt 77 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGA--RMVNI--DGKQIKLQIWDT 77 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEEE--EEEEE--TTEEEEEEEECC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEE--EEEEE--CCEEEEEEEEEC
Confidence 345679999999999999999999753221110 0011222221 12222 233578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+... .+..+.. .++|+++|+||+|+.
T Consensus 78 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 78 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp TTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 999999988899999999999999998754333322 2233332 479999999999984
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-15 Score=150.58 Aligned_cols=159 Identities=14% Similarity=0.060 Sum_probs=110.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++..... .... |+......+...+..+.||||||+++|..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~----t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 82 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNE--------------DMIP----TVGFNMRKITKGNVTIKLWDIGGQPRFRS 82 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------SCCC----CCSEEEEEEEETTEEEEEEEECCSHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCC--------------ccCC----CCceeEEEEEeCCEEEEEEECCCCHhHHH
Confidence 45778999999999999999999743110 0111 22223334667788999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++|+|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+++ .+.+.......
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~~----~~~~~~~~~~~ 156 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGALD-EKEL----IEKMNLSAIQD 156 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCC-HHHH----HHHTTGGGCCS
T ss_pred HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccCCC-HHHH----HHHhChhhhcc
Confidence 99999999999999999987543 333344443332 4677 999999999975321 1222 22222111222
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
...+++++||++| .|+++++++|.+.+.
T Consensus 157 ~~~~~~~~SA~~g-----------~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 157 REICCYSISCKEK-----------DNIDITLQWLIQHSK 184 (188)
T ss_dssp SCEEEEECCTTTC-----------TTHHHHHHHHHHTCC
T ss_pred CCeeEEEEECCCC-----------CCHHHHHHHHHHHHH
Confidence 3568999999987 389999999987654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-15 Score=152.74 Aligned_cols=130 Identities=22% Similarity=0.217 Sum_probs=85.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-. . ...|+......+.+. ....+.+++||||
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~--~-------------------~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~ 62 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYR--D-------------------TQTSITDSSAIYKVN-NNRGNSLTLIDLP 62 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCC--C-------------------BCCCCSCEEEEEECS-STTCCEEEEEECC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc--c-------------------ccCCcceeeEEEEec-CCCccEEEEEECC
Confidence 45678999999999999999999753311 0 011211222223333 1125789999999
Q ss_pred CCCCcHH-HHHHHhhccCeEEEEEeCCCCCchhHH---HHHHHH------hhcCCCEEEEEeCcCCCCC-CHHHHHHHHH
Q psy5021 86 GHVDFTI-EVERSLRVLDGAVIIICASSGIQPQTE---TVWFQS------QKYKVPKMIFVNKMDRIGA-NYNNCIIDIK 154 (1021)
Q Consensus 86 G~~~f~~-~~~~~l~~~D~~ilvvda~~g~~~~t~---~~~~~~------~~~~~p~iiviNK~D~~~~-~~~~~~~~i~ 154 (1021)
|+.+|.. .+..+++.+|++|+|+|+++ ...+.. ..|... ...++|+++|+||+|+... ......+.+.
T Consensus 63 G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~ 141 (214)
T 2fh5_B 63 GHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLE 141 (214)
T ss_dssp CCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHH
Confidence 9999988 67778999999999999986 222222 333322 1347899999999999765 3555556665
Q ss_pred HHhC
Q psy5021 155 KKFN 158 (1021)
Q Consensus 155 ~~l~ 158 (1021)
+.++
T Consensus 142 ~~l~ 145 (214)
T 2fh5_B 142 KELN 145 (214)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-15 Score=153.35 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=110.1
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++....... ...|+......+..++..+.||||||+++|.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR 81 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEECSSCEEEEEEECCSTTTG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEECCEEEEEEECCCCHHHH
Confidence 35678899999999999999999975411100 1123333444566677899999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
..+..++..+|++|+|+|+++... ....+++..+.. .++| +++|+||+|+.+... .++ +.+.+....
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~----~~~~~~~~~ 155 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAVT-SVK----VSQLLCLEN 155 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTSTTCCC-HHH----HHHHHTGGG
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcccCCC-HHH----HHHHhChhh
Confidence 888888999999999999987432 233344444443 3667 999999999975221 222 222332112
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+....++++++||++| .|+++++++|.+.+
T Consensus 156 ~~~~~~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 185 (190)
T 2h57_A 156 IKDKPWHICASDAIKG-----------EGLQEGVDWLQDQI 185 (190)
T ss_dssp CCSSCEEEEECBTTTT-----------BTHHHHHHHHHHHC
T ss_pred ccCCceEEEEccCCCC-----------cCHHHHHHHHHHHH
Confidence 2223578999999987 38999999987755
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=156.48 Aligned_cols=118 Identities=15% Similarity=0.076 Sum_probs=80.4
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|+.|+|||||+++|+...-... ....++.......+.+. +..+.+.||||
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt 76 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPS------------------FITTIGIDFKIKTVDIN--GKKVKLQLWDT 76 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCS------------------SSCCCSCCEEEEEEEET--TEEEEEEEECC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcc------------------cCCcccceEEEEEEEEC--CEEEEEEEEeC
Confidence 34567999999999999999999974321100 01122222222233333 33478999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 77 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999988889999999999999999875433222222 33332 378999999999984
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=150.27 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=53.2
Q ss_pred eeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH-hhcCCCEEEEEeCcCC
Q psy5021 77 YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS-QKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 77 ~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~-~~~~~p~iiviNK~D~ 141 (1021)
..+.||||||+.+|...+..+++.+|++|+|+|++++...+....| ..+ ...+.|+++|+||+|+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 7899999999999999999999999999999999987544443333 333 3356999999999993
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=167.05 Aligned_cols=161 Identities=19% Similarity=0.187 Sum_probs=113.5
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh-h
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA-D 726 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~-~ 726 (1021)
..++..++++|++|+|||||+|+|++....+.... .+.|.+.....+..++..+.||||||+. +
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~---------------~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~ 69 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRK---------------AQTTRHRIVGIHTEGAYQAIYVDTPGLHME 69 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCC---------------SSCCSSCEEEEEEETTEEEEEESSSSCCHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCC---------------CCcceeeEEEEEEECCeeEEEEECcCCCcc
Confidence 35677899999999999999999998643322111 1223333333356678899999999987 3
Q ss_pred hHH--------HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 727 YIK--------NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 727 ~~~--------~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
+.. .+..++..+|++++|+|+++ ...+++..+..+...+.| +|+++||+|+..... .+.+.+.++.+
T Consensus 70 ~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P-~ilvlNK~D~~~~~~---~~~~~l~~l~~ 144 (301)
T 1ega_A 70 EKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAP-VILAVNKVDNVQEKA---DLLPHLQFLAS 144 (301)
T ss_dssp HHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSC-EEEEEESTTTCCCHH---HHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCC-EEEEEECcccCccHH---HHHHHHHHHHH
Confidence 322 22344578899999999988 778888777777666888 888999999876222 22334444444
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.+++ ..++++||+++ .+++.|++.+...++
T Consensus 145 ~~~~----~~~i~iSA~~g-----------~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 145 QMNF----LDIVPISAETG-----------LNVDTIAAIVRKHLP 174 (301)
T ss_dssp TSCC----SEEEECCTTTT-----------TTHHHHHHHHHTTCC
T ss_pred hcCc----CceEEEECCCC-----------CCHHHHHHHHHHhCC
Confidence 4443 36899999987 388999999987665
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.60 E-value=6e-15 Score=150.20 Aligned_cols=115 Identities=16% Similarity=0.066 Sum_probs=79.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|+.|+|||||+++|+...-.... .. |+.... ......++..+.+.+|||||+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~------~~--------------t~~~~~-~~~~~~~~~~~~~~i~Dt~G~ 63 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEY------IP--------------TVFDNY-SANVMVDGKPVNLGLWDTAGQ 63 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSC------CC--------------CSCCEE-EEEEEETTEEEEEEEECCCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCc------CC--------------ccccee-EEEEEECCEEEEEEEEECCCC
Confidence 468999999999999999999743211000 00 111000 111112234678889999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhhc--CCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
.+|...+..+++.+|++++|+|++++...+... .| ..+... ++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred HhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 999888888999999999999998864444332 33 333333 899999999999854
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-15 Score=172.19 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=85.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+|+|++|+|||||+++|+.....+.. ...|+|.+.....+.+. +..+.+|||||
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~-----------------~~~gtT~d~~~~~i~~~----g~~~~l~Dt~G 237 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVS-----------------PIPGTTRDPVDDEVFID----GRKYVFVDTAG 237 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----------------CCC------CCEEEEET----TEEEEESSCSC
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccC-----------------CCCCCcCCceEEEEEEC----CEEEEEEECCC
Confidence 4578999999999999999999743221111 12356666666677777 77899999999
Q ss_pred CCCcHH------------HHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 87 HVDFTI------------EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f~~------------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
+..+.. ....+++.+|++++|+|++++...+...++..+...++|+++++||+|+..
T Consensus 238 ~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 238 LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVV 306 (439)
T ss_dssp C-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred CccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCC
Confidence 854432 235678899999999999999988888888888888999999999999863
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.2e-15 Score=150.85 Aligned_cols=158 Identities=21% Similarity=0.252 Sum_probs=114.7
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC------
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG------ 723 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG------ 723 (1021)
....+.++|.+++|||||+++|++..... .....|.|........ +..+.+|||||
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~ 83 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAF---------------VSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKV 83 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSC---------------CCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCcccc---------------ccCCCCCccCeEEEEE---CCcEEEEECCCCccccC
Confidence 44678999999999999999999854111 1122344444333222 45688999999
Q ss_pred ----hhhhHHHHHHHhhhC---CEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh
Q psy5021 724 ----HADYIKNMITGAAQM---DGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL 796 (1021)
Q Consensus 724 ----~~~~~~~~~~~~~~a---D~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~ 796 (1021)
++.|...+..+++.+ |++++|+|++.+........+..+...++| +++|+||+|+.+..+ .....+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~-~~~~~~~~~~~ 161 (195)
T 3pqc_A 84 SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP-FTIVLTKMDKVKMSE-RAKKLEEHRKV 161 (195)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGG-HHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEEChhcCChHH-HHHHHHHHHHH
Confidence 666666655555554 999999999988877777788888888999 999999999986332 34445566666
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+...+ .++++++||++| .|+++++++|.+.+
T Consensus 162 ~~~~~----~~~~~~~Sa~~~-----------~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 162 FSKYG----EYTIIPTSSVTG-----------EGISELLDLISTLL 192 (195)
T ss_dssp HHSSC----CSCEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HhhcC----CCceEEEecCCC-----------CCHHHHHHHHHHHh
Confidence 65543 357999999987 38999999987654
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=150.68 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=69.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+.+|+++|+.|+|||||+++|......... ....+.......+.+ ++..+.+.+|||||+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~ 61 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH------------------EMENSEDTYERRIMV--DKEEVTLIVYDIWEQ 61 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------------------------CEEEEEEEE--TTEEEEEEEECCCCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc------------------cCCCcCCeeeEEEEE--CCeEEEEEEEECCCc
Confidence 568999999999999999999632211110 001111111122222 344678999999999
Q ss_pred CCcHH-HHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh----cCCCEEEEEeCcCCC
Q psy5021 88 VDFTI-EVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~-~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~----~~~p~iiviNK~D~~ 142 (1021)
.+|.. ....+++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp --------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred cccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 99876 555668899999999999874322222 22233322 379999999999985
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-15 Score=154.70 Aligned_cols=118 Identities=14% Similarity=0.025 Sum_probs=80.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.-.. ...+... ....+..++..+.+++||||
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-------------------~~t~~~~--~~~~~~~~~~~~~l~i~Dt~ 86 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY-------------------IPTVFDN--YSANVMVDGKPVNLGLWDTA 86 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C-------------------CCCSEEE--EEEEEECC-CEEEEEEEEEC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc-------------------CCeecce--eEEEEEECCEEEEEEEEECC
Confidence 34568999999999999999999753221110 0111111 11122223446778899999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhhc--CCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQKY--KVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~~--~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+...
T Consensus 87 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 87 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTC
T ss_pred CchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccc
Confidence 99999988889999999999999999865544432 33 333333 8999999999998643
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=151.90 Aligned_cols=156 Identities=19% Similarity=0.152 Sum_probs=107.5
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++.... ......|. ....+..++..+.+|||||+++|.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~ 79 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVV---------------HTSPTIGS----NVEEIVINNTRFLMWDIGGQESLR 79 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCE---------------EEECCSSS----SCEEEEETTEEEEEEEESSSGGGT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC---------------ccCCcCce----eeEEEEECCEEEEEEECCCCHhHH
Confidence 45678899999999999999999975320 01111222 223455577899999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+ ++.+.+......
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~ 153 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VA----EISQFLKLTSIK 153 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCCC-HH----HHHHHhCccccc
Confidence 888888999999999999998643 334444444433 4566 999999999975211 12 222222211122
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
...++++++||++| .|+++++++|.+
T Consensus 154 ~~~~~~~~~Sa~~g-----------~gi~~l~~~l~~ 179 (181)
T 2h17_A 154 DHQWHIQACCALTG-----------EGLCQGLEWMMS 179 (181)
T ss_dssp SSCEEEEECBTTTT-----------BTHHHHHHHHHT
T ss_pred CCceEEEEccCCCC-----------cCHHHHHHHHHh
Confidence 23468999999987 389999998875
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=154.04 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=105.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.... .+....++.+.....+..++ ..+.||||||+++|
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 88 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 88 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH
Confidence 3467889999999999999999974311 11122233344444444444 47889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
...+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+..... .++...+.+.+.
T Consensus 89 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~~~~v~---~~~~~~~~~~~~-- 162 (192)
T 2il1_A 89 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREIT---RQQGEKFAQQIT-- 162 (192)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHTST--
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHhcC--
Confidence 9999999999999999999998544333 3344444443 566 99999999997532211 122334444331
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
..+++++||++|. |++++++.|.+.
T Consensus 163 --~~~~~~~SA~~g~-----------gi~~l~~~l~~~ 187 (192)
T 2il1_A 163 --GMRFCEASAKDNF-----------NVDEIFLKLVDD 187 (192)
T ss_dssp --TCEEEECBTTTTB-----------SHHHHHHHHHHH
T ss_pred --CCeEEEEeCCCCC-----------CHHHHHHHHHHH
Confidence 3579999999873 888888888653
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-15 Score=167.39 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=77.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+|+|++|+|||||+++|+... .. .. ..|+......+.+. ++.++||||||+.
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~--~~------------~~-------~pT~~~~~~~~~~~----~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGE--IV------------TT-------IPTIGFNVETVEYK----NISFTVWDVGGQD 220 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSC--CE------------EE-------EEETTEEEEEEEET----TEEEEEEECC---
T ss_pred ceEEEECCCCccHHHHHHHHhCCC--CC------------Cc-------ccccceEEEEEecC----cEEEEEEECCCCH
Confidence 479999999999999999994211 10 00 01444444555665 8899999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHH-HHhh---cCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWF-QSQK---YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~-~~~~---~~~p~iiviNK~D~~~~ 144 (1021)
+|...+..+++.+|++|+|+|+++...... ...|. .+.. .++|+++|+||+|+...
T Consensus 221 ~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp --CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 999999999999999999999987543322 22232 3222 38999999999999754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=153.21 Aligned_cols=117 Identities=18% Similarity=0.102 Sum_probs=73.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... .+ |+.... ...+..++..+.+.+||||
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~-------------~~-------t~~~~~-~~~~~~~~~~~~~~i~Dt~ 64 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY-------------VP-------TVFDNF-SANVVVNGATVNLGLWDTA 64 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------------C-BCCCC-------CEEECCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------CC-------eeeeeE-EEEEEECCEEEEEEEEECC
Confidence 34568999999999999999999753211000 00 110000 0001112335678899999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhh--cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++++|+|+++....+... .| ..+.. .++|+++|+||+|+..
T Consensus 65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 65 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp C-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred CChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 99999988899999999999999998754433332 33 33333 3799999999999853
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-15 Score=150.49 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=79.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... . ..+.......+.+ ++..+.+.|||||
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~--------------~t~~~~~~~~~~~--~~~~~~~~l~Dt~ 74 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----E--------------PTKADSYRKKVVL--DGEEVQIDILDTA 74 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-----C--------------TTCCEEEEEEEEE--TTEEEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcC-----C--------------CccceEEEEEEEE--CCEEEEEEEEECC
Confidence 35689999999999999999999753311000 0 0011111111222 2335789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-----HHHhhcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-----FQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-----~~~~~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++++|+|+++....+....| +.....++|+++|+||+|+.
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 75 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp CTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred CCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999999875332222222 22223489999999999984
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=156.33 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=78.9
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+..+..+|+++|+.|+|||||+++|+...-.... . .|+.... ...+..++..+.+.|||
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-------------~-------~t~~~~~-~~~~~~~~~~~~~~l~D 78 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY-------------D-------PTVENTY-SKIVTLGKDEFHLHLVD 78 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC-------------C-------CCSEEEE-EEEEC----CEEEEEEE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC-------------C-------CccceEE-EEEEEECCEEEEEEEEE
Confidence 3456789999999999999999999753321110 0 0111111 11122233478899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh----hcCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~----~~~~p~iiviNK~D~~ 142 (1021)
|||+.+|...+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 79 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp ECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred CCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 999999998889999999999999999975433333333 3332 2378999999999985
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=149.03 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=80.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|..|+|||||+++|..... . +...+.+.........+. ++..+.+++|||
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~---~----------------~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt 76 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS---P----------------NETLFLESTNKIYKDDIS-NSSFVNFQIWDF 76 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCC---G----------------GGGGGCCCCCSCEEEEEC-CTTSCCEEEEEC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCC---C----------------cceeeeccccceeeeecc-CCCeeEEEEEEC
Confidence 45567899999999999999998753111 0 011122222222222222 234688999999
Q ss_pred CCCCCcHHHH---HHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEV---ERSLRVLDGAVIIICASSGIQPQTETVWFQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~---~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
||+.+|.... ..+++.+|++|+|+|+++........+..++.. .++|+++|+||+|+..
T Consensus 77 ~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 77 PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp CSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred CCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 9999998777 789999999999999998743333444333332 4899999999999864
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-15 Score=155.09 Aligned_cols=120 Identities=18% Similarity=0.141 Sum_probs=81.7
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc--------cCc
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN--------KFK 76 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~--------~~~ 76 (1021)
.++..+|+++|+.|+|||||+++|+...-... ....+++......+.+... ...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPK------------------FITTVGIDFREKRVVYNAQGPNGSSGKAFK 83 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCE------------------EEEEEEEEEEEEEEEEEC-------CCEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcC------------------CCCceeEEEEEEEEEECCccccccccCcee
Confidence 45678999999999999999999973211000 0011111111222333311 015
Q ss_pred eeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hhh----cCCCEEEEEeCcCCC
Q psy5021 77 YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 77 ~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~~----~~~p~iiviNK~D~~ 142 (1021)
+.++||||||+.+|...+..+++.+|++|+|+|+++....+....|.. +.. .++|+++|+||+|+.
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred EEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 789999999999999999999999999999999988654444333332 222 578999999999985
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-15 Score=152.94 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=80.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+...-.... . +.+.......+.+ ++..+.+.||||
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------~------~t~~~~~~~~~~~--~~~~~~~~l~Dt 69 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-------------E------PTKADSYRKKVVL--DGEEVQIDILDT 69 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-------------C------TTCCEEEEEEEEE--TTEEEEEEEEEC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC-------------C------CccceEEEEEEEE--CCEEEEEEEEcC
Confidence 345689999999999999999999753311000 0 0011111112222 233568999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH----hhcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++++|+|+++.........| ..+ ...++|+++|+||+|+.
T Consensus 70 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 70 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp CCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred CChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 99999999999999999999999999875433332222 222 23489999999999985
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-15 Score=151.47 Aligned_cols=172 Identities=18% Similarity=0.113 Sum_probs=109.1
Q ss_pred EEcchhhhccCCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 635 SYIPLRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 635 a~~P~~e~~~~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
++.+...++.-....+.+.+.++|.+++|||||+++|++.... ...+ |+......++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~---------------~~~~----t~~~~~~~~~~~~~ 73 (192)
T 2b6h_A 13 GLVPRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV---------------TTIP----TIGFNVETVEYKNI 73 (192)
T ss_dssp ----CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE---------------EEEE----ETTEEEEEEEETTE
T ss_pred ccchHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc---------------ccCC----cCceeEEEEEECCE
Confidence 4444444444333456788999999999999999999864311 0111 22233445666788
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLV 789 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~ 789 (1021)
.+.+|||||+++|...+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+++
T Consensus 74 ~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~i 151 (192)
T 2b6h_A 74 CFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNAMP-VSEL 151 (192)
T ss_dssp EEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HHHH
T ss_pred EEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCCCC-HHHH
Confidence 99999999999998888889999999999999987643 233344433332 2566 999999999976321 1222
Q ss_pred HHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 790 EMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 790 ~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+ .+.........++++++||++| .|+++++++|.+.+
T Consensus 152 ~~----~~~~~~~~~~~~~~~~~SA~~g-----------~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 152 TD----KLGLQHLRSRTWYVQATCATQG-----------TGLYDGLDWLSHEL 189 (192)
T ss_dssp HH----HTTGGGCSSCCEEEEECBTTTT-----------BTHHHHHHHHHHHT
T ss_pred HH----HhCcccccCCceEEEECcCCCc-----------CCHHHHHHHHHHHH
Confidence 22 2211112223468999999987 38999999987654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-15 Score=145.91 Aligned_cols=154 Identities=19% Similarity=0.120 Sum_probs=105.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|.+++|||||+++|++.... . ..+ |+......++..+..+.+|||||+++|...+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~------------~---~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 62 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV------------T---TIP----TIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS------------C---CCC----CSSCCEEEEECSSCEEEEEECCCCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC------------c---ccC----cCceeEEEEEECCEEEEEEEcCCChhhHHHHH
Confidence 4678899999999999999874311 0 011 22233344566778999999999999999888
Q ss_pred HHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
.+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+.+..+ +.........+
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~~~~~----~~~~~~~~~~~ 136 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMN-AAEITDK----LGLHSLRHRNW 136 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HHHHHHH----TTGGGCSSCCE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCCC-HHHHHHH----hCcccccCccE
Confidence 99999999999999987543 223334433332 2566 999999999976321 1222222 21111122346
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++++||++| .|+++++++|.+.+
T Consensus 137 ~~~~~Sa~~~-----------~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 137 YIQATCATSG-----------DGLYEGLDWLSNQL 160 (164)
T ss_dssp EEEECBTTTT-----------BTHHHHHHHHHHHC
T ss_pred EEEEcccCCC-----------cCHHHHHHHHHHHH
Confidence 8999999987 38999999987755
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=159.94 Aligned_cols=118 Identities=20% Similarity=0.169 Sum_probs=80.4
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEc
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIID 83 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liD 83 (1021)
.+...+|+++|+.|+|||||+++|+...-. . ....|+........+.. ++..+.+++||
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~------------------~~~~t~~~~~~~~~~~~~~~~~~~~~l~D 67 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFE--K------------------NYNATVGAVNHPVTFLDDQGNVIKFNVWD 67 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTT--C------------------EEETTTTEEEEEEEEEBTTSCEEEEEEEE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCC--C------------------CCCCccceeeEEEEEEeCCCcEEEEEEEe
Confidence 345679999999999999999998532110 0 00011111222222222 22237899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH---hhcCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~---~~~~~p~iiviNK~D~~ 142 (1021)
|||+.+|.......++.+|++|+|+|++++...+....| ..+ ...++|+++|+||+|+.
T Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp ECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred cCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999999988888999999999999999987554444333 222 33479999999999985
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=150.18 Aligned_cols=114 Identities=13% Similarity=0.063 Sum_probs=62.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.-+|+++|++|+|||||+++|...... ......|.|... .+..++..+.+.+|||||+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-----------------~~~~~~~~~~~~-----~~~~~~~~~~~~i~D~~g~ 59 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-----------------PEAEAAGHTYDR-----SIVVDGEEASLMVYDIWEQ 59 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC---------------------------CEEEE-----EEEETTEEEEEEEEECC--
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-----------------CCCCccccceEE-----EEEECCEEEEEEEEECCCC
Confidence 347999999999999999999421110 000112233321 1122344678999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh----cCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~----~~~p~iiviNK~D~~~ 143 (1021)
.+|......+++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp -------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 99999999999999999999999875332222 23333333 4799999999999863
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-15 Score=160.39 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=84.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
......+|+++|+.|+|||||+++|+...-... + ....|.|.......+. +..+.+++||
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~----------~------~~t~~~~~~~~~~~~~----~~~~~~~i~D 70 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKK----------Y------VATLGVEVHPLVFHTN----RGPIKFNVWD 70 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCE----------E------ETTTTEEEEEEEEEET----TEEEEEEEEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCC----------C------CCccceeEEEEEEEEC----CEEEEEEEEe
Confidence 344567899999999999999999653221100 0 0122344443333332 3378899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hhh--cCCCEEEEEeCcCCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~~--~~~p~iiviNK~D~~~ 143 (1021)
|||+.+|...+..+++.+|++|+|+|+++....+....|.. +.. .++|+++|+||+|+..
T Consensus 71 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 71 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp ECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred CCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 99999999889999999999999999998654444444432 222 3899999999999864
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=156.90 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=105.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++... ........|.+.......+......+.||||||+++|..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 92 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEF--------------RENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS 92 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCC--------------C----------CEEEEEEETTEEEEEEEEECTTCTTCHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCC--------------CccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhh
Confidence 457889999999999999999997431 111222334444444444443345689999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhh---HHHHHHHHHHHhhhcccc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKE---LLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~---~~~~~~~~~~~~l~~~~~ 802 (1021)
.+..+++.+|++|+|+|++++...+. ..++..+... ++| +++|+||+|+.+... ......++...+.+..+
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~- 170 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG- 170 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-
T ss_pred hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccccccccCHHHHHHHHHHcC-
Confidence 99999999999999999987544332 3344444433 677 999999999864210 00001123334444443
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++++++|.+.+
T Consensus 171 ----~~~~~~SA~~g-----------~gv~el~~~l~~~i 195 (199)
T 2p5s_A 171 ----ALFCETSAKDG-----------SNIVEAVLHLAREV 195 (199)
T ss_dssp ----CEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred ----CeEEEeeCCCC-----------CCHHHHHHHHHHHH
Confidence 57999999987 38889998887644
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=174.52 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=115.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe-EEEEEecCChhhh--
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK-HYAHVDCPGHADY-- 727 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~-~i~liDtpG~~~~-- 727 (1021)
...++++|++++|||||+|+|++... ...+...|+|++.....++..+. .+.|||||||.+|
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~---------------~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~ 98 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNV---------------SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGE 98 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTCCCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCC---------------CccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccc
Confidence 46789999999999999999997431 12345568888888888887765 8999999999876
Q ss_pred -----HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 -----IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 -----~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
...+..++..+|++|+|+|+ +...++.+++..+...++| +|+|+||+|+...... +...++.+.++
T Consensus 99 l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl~~~~~~-----~~~~~l~~~~g- 169 (423)
T 3qq5_A 99 LGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIP-FVVVVNKIDVLGEKAE-----ELKGLYESRYE- 169 (423)
T ss_dssp TCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCC-EEEECCCCTTTTCCCT-----HHHHHSSCCTT-
T ss_pred hhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCC-EEEEEeCcCCCCccHH-----HHHHHHHHHcC-
Confidence 34567788999999999998 6788999999999999999 9999999999863321 22333444444
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
++++++||++|. +++++++.|.+.++.
T Consensus 170 ----~~v~~vSAktg~-----------gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 170 ----AKVLLVSALQKK-----------GFDDIGKTISEILPG 196 (423)
T ss_dssp ----CCCCCCSSCCTT-----------STTTHHHHHHHHSCC
T ss_pred ----CCEEEEECCCCC-----------CHHHHHHHHHHhhhh
Confidence 478999999873 778888888877643
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=148.43 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=79.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
....+|+++|+.|+|||||+++|+...-.... ..|+...... .+..++..+.+.+||||
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------------~~t~~~~~~~-~~~~~~~~~~~~l~Dt~ 64 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY--------------------IPTIEDTYRQ-VISCDKSVCTLQITDTT 64 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTT--------------------SCCCCEEEEE-EEEETTEEEEEEEEECC
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcc--------------------cCccccceeE-EEEECCEEEEEEEEeCC
Confidence 44578999999999999999999752211000 0011111111 11122336789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++...... ...|..+.. .++|+++|+||+|+..
T Consensus 65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 65 GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp GGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred ChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 999999999999999999999999987432222 223333322 3789999999999863
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-15 Score=152.92 Aligned_cols=163 Identities=17% Similarity=0.088 Sum_probs=107.3
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
++.+.+.++|.+++|||||+++|++..... ......+.+. ...+..++ ..+.+|||||+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPG--------------EYIPTVFDNY---SANVMVDGKPVNLGLWDTAGQED 65 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--------------SCCCCSCCEE---EEEEEETTEEEEEEEECCCCSGG
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCC--------------CcCCccccee---EEEEEECCEEEEEEEEECCCCHh
Confidence 456778999999999999999998643110 0001111111 12233334 4567999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHH
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEI 793 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~ 793 (1021)
|...+..+++.+|++++|+|++++...+.. .++..+... ++| +++|+||+|+.+.....+.+ ..+.
T Consensus 66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 144 (186)
T 1mh1_A 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 144 (186)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccccccchhhhhhcccccccCCHHHH
Confidence 988877888999999999999875433332 344444444 777 99999999997632222111 1223
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
..+.+..++ .+++++||++| .|++++++.|.+.+..
T Consensus 145 ~~~~~~~~~----~~~~~~Sa~~g-----------~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 145 LAMAKEIGA----VKYLECSALTQ-----------RGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHTTC----SEEEECCTTTC-----------TTHHHHHHHHHHHHSC
T ss_pred HHHHHhcCC----cEEEEecCCCc-----------cCHHHHHHHHHHHHhc
Confidence 334444432 37999999987 3899999998876543
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=159.48 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=79.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|+.|+|||||+++|+........ ...++.......+.+. +..+.+.||||
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~--~~~~~~~i~Dt 69 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS------------------KSTIGVEFATRTLEIE--GKRIKAQIWDT 69 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------------------------CCSEEEEEEEET--TEEEEEEEECC
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC------------------CCcccceeEEEEEEEC--CEEEEEEEEEC
Confidence 356789999999999999999999753221110 1112222222223332 33478999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 70 ~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp TTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred CCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999998888999999999999999986544443333 33332 378999999999985
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-15 Score=153.00 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=110.1
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
......+.++|.+++|||||+++|++...... ....+.| .....++..+..+.||||||+++|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-------------~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~ 76 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-------------HITATVG----YNVETFEKGRVAFTVFDMGGAKKF 76 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC-----------------CCCCCSS----EEEEEEEETTEEEEEEEECCSGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccc-------------ccccccc----eeEEEEEeCCEEEEEEECCCCHhH
Confidence 34557788999999999999999998542110 0111223 333445677889999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-----------CCCeEEEEEeeccccchhhHHHHHHHHHH-
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV-----------GVPNIVVFLNKADCVQDKELLDLVEMEIR- 794 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~-----------~ip~iIvviNK~Dl~~~~~~~~~~~~~~~- 794 (1021)
...+..+++.+|++|+|+|+++... ....+++..+... ++| +|+|+||+|+.+... .+++.+.+.
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~~~~~~~~ 154 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDAAGAKT-AAELVEILDL 154 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTSTTCCC-HHHHHHHHTH
T ss_pred HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCCCCCCC-HHHHHHHhcc
Confidence 9888888999999999999998653 3344455444433 778 999999999986321 222222221
Q ss_pred -HhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 795 -ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 795 -~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+.+. ..++++++||++| .|+++++++|.+.+
T Consensus 155 ~~~~~~-----~~~~~~~~Sa~~g-----------~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 155 TTLMGD-----HPFVIFASNGLKG-----------TGVHEGFSWLQETA 187 (199)
T ss_dssp HHHHTT-----SCEEEEECBTTTT-----------BTHHHHHHHHHHHH
T ss_pred hhhccC-----CeeEEEEeeCCCc-----------cCHHHHHHHHHHHH
Confidence 11122 2468999999987 38889998887654
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=156.97 Aligned_cols=163 Identities=19% Similarity=0.167 Sum_probs=106.9
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecC
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCP 722 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtp 722 (1021)
+...++.+-+-++|..++|||||+++++... +......+.|. +.....+..++ ..+.||||+
T Consensus 7 ~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~--------------f~~~~~~Tig~--d~~~k~~~~~~~~v~l~iwDta 70 (216)
T 4dkx_A 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDS--------------FDNTYQATIGI--DFLSKTMYLEDRTIRLQLWDTA 70 (216)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSC--------------CC------------CEEEEEECSSCEEEEEEECCS
T ss_pred CCCCCCcEEEEEECcCCcCHHHHHHHHHhCC--------------CCCCcCCccce--EEEEEEEEecceEEEEEEEECC
Confidence 4455677888899999999999999999743 11112223333 33333333443 567799999
Q ss_pred ChhhhHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 723 GHADYIKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 723 G~~~~~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
|+++|...+..+++.+|++++|+|.++... .....++..+... ++| +|+|.||+|+.+.... ..++..++.+
T Consensus 71 Gqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r~V---~~~e~~~~a~ 146 (216)
T 4dkx_A 71 GLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQV---SIEEGERKAK 146 (216)
T ss_dssp CTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCCS---CHHHHHHHHH
T ss_pred CchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcCcc---cHHHHhhHHH
Confidence 999999999999999999999999987443 2334455444432 466 9999999998753211 1133445555
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.++ ++++.+||++|. |++++++.|.+.++
T Consensus 147 ~~~-----~~~~e~SAktg~-----------nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 147 ELN-----VMFIETSAKAGY-----------NVKQLFRRVAAALP 175 (216)
T ss_dssp HHT-----CEEEEEBTTTTB-----------SHHHHHHHHHHHC-
T ss_pred HhC-----CeeEEEeCCCCc-----------CHHHHHHHHHHHHH
Confidence 555 579999999884 89999999887664
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-15 Score=165.74 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=112.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+...++++|++|+|||||+|+|++... ......|+|++.....+.+.+..+.+|||||+.+|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ----------------HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE----------------EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 457889999999999999999998432 1223457788888888888899999999999988754
Q ss_pred ------HHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcC-CCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 730 ------NMITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVG-VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 730 ------~~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~-ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
.+..++ ..+|++++|+|++++ .+....+..+...+ +| +++|+||+|+.+.... . .....+.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~-~---~~~~~l~~~l 138 (271)
T 3k53_A 66 HSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKKKGA-K---IDIKKMRKEL 138 (271)
T ss_dssp SCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHHHTC-C---CCHHHHHHHH
T ss_pred CCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCccccc-H---HHHHHHHHHc
Confidence 333344 579999999999873 34555566666777 78 9999999998652111 0 1122233334
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+ ++++++||++|. |++++++.+.+.+
T Consensus 139 g-----~~~~~~Sa~~g~-----------gi~~l~~~i~~~~ 164 (271)
T 3k53_A 139 G-----VPVIPTNAKKGE-----------GVEELKRMIALMA 164 (271)
T ss_dssp S-----SCEEECBGGGTB-----------THHHHHHHHHHHH
T ss_pred C-----CcEEEEEeCCCC-----------CHHHHHHHHHHHH
Confidence 4 479999999873 7888888887643
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=154.84 Aligned_cols=162 Identities=18% Similarity=0.102 Sum_probs=107.8
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCCh
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGH 724 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~ 724 (1021)
...+.+.+.++|.+++|||||+++|++..... ...+.+.+.....+..++. .+.||||||+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPG-----------------EYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC------------------CCCCSEEEEEEEEECC-CEEEEEEEEECCS
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCC-----------------CcCCeecceeEEEEEECCEEEEEEEEECCCc
Confidence 34566889999999999999999999643110 0111222233333444444 4559999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HH
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EM 791 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~ 791 (1021)
++|...+..+++.+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+.....+.. ..
T Consensus 89 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 167 (204)
T 4gzl_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYP 167 (204)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHH
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhccchhhhhhhhccccccccHH
Confidence 99988888889999999999999985543332 344455554 778 99999999997643222211 12
Q ss_pred HHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 792 EIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 792 ~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+...+.+.++. .+++++||++| .|+++++++|.+.
T Consensus 168 ~~~~~~~~~~~----~~~~~~SA~~g-----------~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 168 QGLAMAKEIGA----VKYLECSALTQ-----------RGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHTTC----SEEEECCTTTC-----------TTHHHHHHHHHHT
T ss_pred HHHHHHHhcCC----cEEEEeeCCCC-----------CCHHHHHHHHHHH
Confidence 33444555543 46999999987 3899999988763
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=164.08 Aligned_cols=154 Identities=17% Similarity=0.170 Sum_probs=112.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.++++|.+|+|||||+|+|++.... .....|+|++.....+...+..+.||||||+.+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~----------------~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY----------------VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE----------------EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc----------------ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCC
Confidence 4578899999999999999999974322 122348888888888888889999999999987743
Q ss_pred ------HHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 730 ------NMITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 730 ------~~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
....++ ..+|++++|+|+++. .....++..+...++| +++|+||+|+...... ..+...+.+.++
T Consensus 68 ~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~p-vilv~NK~Dl~~~~~i----~~~~~~l~~~lg 140 (258)
T 3a1s_A 68 SSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKK-VILAMTAIDEAKKTGM----KIDRYELQKHLG 140 (258)
T ss_dssp SSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCC-EEEEEECHHHHHHTTC----CBCHHHHHHHHC
T ss_pred CCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCC-EEEEEECcCCCCccch----HHHHHHHHHHcC
Confidence 223333 479999999999873 2334455666667899 9999999998642111 112233344444
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++|++.|.+..
T Consensus 141 -----~~vi~~SA~~g-----------~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 141 -----IPVVFTSSVTG-----------EGLEELKEKIVEYA 165 (258)
T ss_dssp -----SCEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred -----CCEEEEEeeCC-----------cCHHHHHHHHHHHh
Confidence 47999999987 38889999887644
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=146.42 Aligned_cols=158 Identities=19% Similarity=0.138 Sum_probs=108.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.... ....+.|.+ ...+..++..+.+|||||+++|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~---------------~~~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~~~~ 75 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDIS---------------HITPTQGFN----IKSVQSQGFKLNVWDIGGQRKIRP 75 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCE---------------EEEEETTEE----EEEEEETTEEEEEEECSSCGGGHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC---------------cccCcCCeE----EEEEEECCEEEEEEECCCCHHHHH
Confidence 4578899999999999999999974211 111222322 234455688999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++++|+|+++.... ...+++..+.. .++| +++|+||+|+.+... .+ ++.+.+.......
T Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~~~~~~~~~~~~~ 149 (181)
T 1fzq_A 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAAP-AS----EIAEGLNLHTIRD 149 (181)
T ss_dssp HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCCS
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccCCC-HH----HHHHHhCchhccC
Confidence 999999999999999999875432 23334433322 3577 999999999976321 12 2222222111122
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
..++++++||++| .|+++++++|.+.+.
T Consensus 150 ~~~~~~~~Sa~~g-----------~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 150 RVWQIQSCSALTG-----------EGVQDGMNWVCKNVN 177 (181)
T ss_dssp SCEEEEECCTTTC-----------TTHHHHHHHHHHTC-
T ss_pred CceEEEEccCCCC-----------CCHHHHHHHHHHHHH
Confidence 3468999999987 389999999987653
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-15 Score=152.96 Aligned_cols=156 Identities=15% Similarity=0.095 Sum_probs=109.2
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++... ..+...+++.+.....+..++ ..+.||||||+++|.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 79 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTY----------------TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 79 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC----------------CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC----------------CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh
Confidence 46789999999999999999997431 112223445555555555555 568899999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++.... ....++..+... ++| +++|+||+|+.+...... .+...+.+.++
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~--- 152 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVDY---TTAKEFADSLG--- 152 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCH---HHHHHHHHHTT---
T ss_pred hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccCH---HHHHHHHHHcC---
Confidence 9999999999999999999874432 223444444443 566 899999999975322111 22334444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 153 --~~~~~~Sa~~g~-----------gv~~l~~~l~~~i 177 (196)
T 3tkl_A 153 --IPFLETSAKNAT-----------NVEQSFMTMAAEI 177 (196)
T ss_dssp --CCEEEECTTTCT-----------THHHHHHHHHHHH
T ss_pred --CcEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 479999999873 8888888776644
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-15 Score=150.57 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=108.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.. ... ... |+......+..++..+.+|||||+++|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~-------------~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 77 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDT-------------ISP----TLGFNIKTLEHRGFKLNIWDVGGQKSLRS 77 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSS-------------CCC----CSSEEEEEEEETTEEEEEEEECCSHHHHT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCc-------------ccc----cCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 45788999999999999999999743 100 011 22223334555788999999999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+ ++.+.+.......
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~ 151 (186)
T 1ksh_A 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGALS-CN----AIQEALELDSIRS 151 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCCS
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCCCC-HH----HHHHHhChhhccC
Confidence 88888999999999999988653 333344444333 2566 999999999976321 22 2222222111222
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++++++||++| .|+++++++|.+.+
T Consensus 152 ~~~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 152 HHWRIQGCSAVTG-----------EDLLPGIDWLLDDI 178 (186)
T ss_dssp SCEEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred CceEEEEeeCCCC-----------CCHHHHHHHHHHHH
Confidence 3568999999987 38899999887654
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-15 Score=154.26 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=111.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 88 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFT--------------PAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI 88 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTC--------------CCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCC--------------cccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHH
Confidence 467889999999999999999974311 111223355555555556666778999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..+++.+|++|+|+|+++... ....+++..+.. .++| +++|+||+|+.+...... .+...+.+..+
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~----- 159 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEERVVPT---EKGQLLAEQLG----- 159 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT-----
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCH---HHHHHHHHHcC-----
Confidence 9999999999999999987433 223444555555 3566 999999999865321111 23333444444
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.|.+.+
T Consensus 160 ~~~~~~Sa~~~~-----------gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 FDFFEASAKENI-----------SVRQAFERLVDAI 184 (191)
T ss_dssp CEEEECBTTTTB-----------SHHHHHHHHHHHH
T ss_pred CeEEEEECCCCC-----------CHHHHHHHHHHHH
Confidence 479999999873 8888888876543
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-15 Score=147.57 Aligned_cols=155 Identities=20% Similarity=0.150 Sum_probs=103.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++..... ......+ +.....+..++ ..+.+|||||+++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~ 64 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--------------KYDPTIE---DFYRKEIEVDSSPSVLEILDTAGTEQF 64 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--------------CCCTTCC---EEEEEEEEETTEEEEEEEEECCCTTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--------------cCCCCcc---eeEEEEEEECCEEEEEEEEECCCchhh
Confidence 45678999999999999999999743110 0011111 11122333444 45889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
...+..+++.+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+.+..+.. ..+...+.+..+
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 139 (167)
T 1kao_A 65 ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREVS---SSEGRALAEEWG- 139 (167)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT-
T ss_pred HHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccCC---HHHHHHHHHHhC-
Confidence 999999999999999999998743322 2333333332 3677 99999999987532211 122333444444
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++| .|+++++++|.+.
T Consensus 140 ----~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 163 (167)
T 1kao_A 140 ----CPFMETSAKSK-----------TMVDELFAEIVRQ 163 (167)
T ss_dssp ----SCEEEECTTCH-----------HHHHHHHHHHHHH
T ss_pred ----CCEEEecCCCC-----------cCHHHHHHHHHHH
Confidence 46899999987 4889999888653
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=157.27 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=79.2
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+...... +....++.......+.+ ++..+.+.||||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~--~~~~~~l~l~Dt 81 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQ------------------DSNHTIGVEFGSRVVNV--GGKTVKLQIWDT 81 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------------------------CCEEEEEEEE--TTEEEEEEEECC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCc------------------cCCCcccceeEEEEEEE--CCeeeEEEEEcC
Confidence 4567899999999999999999997322110 01111222222222222 233578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 82 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp TTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred CCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 99988888888999999999999999976443333333 2232 3479999999999984
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=147.98 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=68.7
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|+.|+|||||+++|+........ . +.+.......+.+ ++..+.+.+|||||+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----~--------------~t~~~~~~~~~~~--~~~~~~~~l~Dt~G~ 79 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY-----D--------------PTIEDSYRKQVVI--DGETCLLDILDTAGQ 79 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCC-----C--------------TTCCEEEEEEEEE--TTEEEEEEEEECCC-
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcccc-----C--------------CccceEEEEEEEE--CCEEEEEEEEECCCh
Confidence 358999999999999999999753211000 0 0010111112222 233577999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh----hcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
.+|...+..+++.+|++++|+|+++.........| ..+. ..++|+++|+||+|+..
T Consensus 80 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 80 EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp ----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 99999999999999999999999876443333333 2222 24799999999999863
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-15 Score=153.89 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=83.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++... ..+...+++.+.....+..++ ..+.||||||+++|.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF----------------NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 71 (183)
T ss_dssp EEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC----------------CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh
Confidence 46788999999999999999986421 111222334444444455555 678999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++... ....+++..+... ++| +++|+||+|+.+..... .++...+++..+
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 144 (183)
T 2fu5_C 72 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQVS---KERGEKLALDYG--- 144 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCCSC---HHHHHHHHHHHT---
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccCcCC---HHHHHHHHHHcC---
Confidence 888888899999999999987433 2333444445443 566 89999999997522110 123334444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.|.+.+
T Consensus 145 --~~~~~~Sa~~~~-----------~i~~l~~~l~~~i 169 (183)
T 2fu5_C 145 --IKFMETSAKANI-----------NVENAFFTLARDI 169 (183)
T ss_dssp --CEEEECCC---C-----------CHHHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 479999999873 7888888876543
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=154.62 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=105.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 73 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFT--------------PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI 73 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--------------SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--------------CCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcch
Confidence 367889999999999999999974311 111122344444444444333467899999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..+++.+|++|+|+|++++...+ ...++..+... ++| +++|+||+|+.+..... ..+...+.+.++
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~----- 144 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERVVS---SERGRQLADHLG----- 144 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCCSC---HHHHHHHHHHHT-----
T ss_pred HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHCC-----
Confidence 999999999999999998754322 23444444442 566 99999999997532111 123334444444
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++++||++|. |+++++++|.+
T Consensus 145 ~~~~~~Sa~~~~-----------gi~~l~~~l~~ 167 (203)
T 1zbd_A 145 FEFFEASAKDNI-----------NVKQTFERLVD 167 (203)
T ss_dssp CEEEECBTTTTB-----------SSHHHHHHHHH
T ss_pred CeEEEEECCCCC-----------CHHHHHHHHHH
Confidence 479999999873 66666666654
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-15 Score=151.08 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=82.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|+.|+|||||+++|..... . .+...++|+......+.+. ++.+++|||||
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~---~---------------~~~~~~~t~~~~~~~~~~~----~~~~~l~Dt~G 63 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV---Y---------------IGNWPGVTVEKKEGEFEYN----GEKFKVVDLPG 63 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE---E---------------EEECTTSCCEEEEEEEEET----TEEEEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc---c---------------ccCCCCeeccceEEEEEeC----CcEEEEEECCC
Confidence 457899999999999999999963210 0 0112356666666666676 78999999999
Q ss_pred CCCcH------HHHHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFT------IEVERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~------~~~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+.+|. .....+++ .+|++++|+|++. .......+..+...+.|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 64 VYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp CSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred cCccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 99884 23344444 4999999999975 2334445566677899999999999973
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-15 Score=149.87 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=103.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++..... ......|. +.....+..++ ..+.+|||||+++|.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--------------~~~~t~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTK--------------DYKKTIGV--DFLERQIQVNDEDVRLMLWDTAGQEEFD 68 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC--------------CSSCCCSS--SEEEEEEEETTEEEEEEEECCTTGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCceEE--EEEEEEEEECCEEEEEEEEcCCCcHhHH
Confidence 4567889999999999999999743110 11111222 23333344443 478899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
..+..+++.+|++++|+|+++... .....++..+.. .+.| +++|+||+|+.+..... .+++..+++..+
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 140 (168)
T 1z2a_A 69 AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSCIK---NEEAEGLAKRLK---- 140 (168)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCSSC---HHHHHHHHHHHT----
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHcC----
Confidence 888888999999999999987442 222333333333 2677 99999999987532111 123344444444
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||+++. |+++++++|.+.
T Consensus 141 -~~~~~~Sa~~~~-----------~i~~l~~~l~~~ 164 (168)
T 1z2a_A 141 -LRFYRTSVKEDL-----------NVSEVFKYLAEK 164 (168)
T ss_dssp -CEEEECBTTTTB-----------SSHHHHHHHHHH
T ss_pred -CeEEEEecCCCC-----------CHHHHHHHHHHH
Confidence 479999999873 788888887653
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-15 Score=148.47 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=103.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++..... ......+... .....+......+.+|||||+++|..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVE--------------KYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTA 66 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--------------SCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHH
Confidence 45678899999999999999999743110 0001111111 11122223345788999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++++|+|+++.... ....++..+.. .++| +++|+||+|+.+..... .++...+.+.++
T Consensus 67 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 139 (167)
T 1c1y_A 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVG---KEQGQNLARQWC--- 139 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT---
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccCC---HHHHHHHHHHcc---
Confidence 988999999999999999874322 22333333333 2677 89999999997532111 123333444332
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
..+++++||++| .|+++++++|.+.
T Consensus 140 -~~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 140 -NCAFLESSAKSK-----------INVNEIFYDLVRQ 164 (167)
T ss_dssp -SCEEEECBTTTT-----------BSHHHHHHHHHHH
T ss_pred -CCcEEEecCCCC-----------CCHHHHHHHHHHH
Confidence 357999999987 3889999988654
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.8e-15 Score=152.39 Aligned_cols=117 Identities=18% Similarity=0.098 Sum_probs=79.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... .. |+.... ...+..++..+.+.+||||
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~------~~--------------t~~~~~-~~~~~~~~~~~~~~i~Dt~ 65 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY------IP--------------TVFDNF-SANVAVDGQIVNLGLWDTA 65 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC------CC--------------SSCCCE-EEEEECSSCEEEEEEECCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccC------CC--------------ccceeE-EEEEEECCEEEEEEEEECC
Confidence 45678999999999999999999743211000 00 111111 1112223446789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhhc--CCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++........ .| ..+... ++|+++|+||+|+..
T Consensus 66 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 66 GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp CCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred CcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 99999988888999999999999998754433322 33 333332 899999999999853
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-15 Score=161.99 Aligned_cols=111 Identities=22% Similarity=0.299 Sum_probs=78.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|++|+|||||+++|.... ...+ +| .|+|+......+ . . +..+++|||||
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~---~~v~---------~~------pg~tv~~~~~~~--~--~-~~~l~l~DtpG 58 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHN---QRVG---------NW------PGVTVERKSGLV--K--K-NKDLEIQDLPG 58 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCC---CCCC---------SS------SCCCCSCEEEEC--T--T-CTTEEEEECCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC---Cccc---------CC------CCCcEEEEEEEE--e--c-CCeEEEEECCC
Confidence 35789999999999999999996321 1111 11 266665443332 2 2 46799999999
Q ss_pred CCCcH------HHHHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFT------IEVERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~------~~~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+.+|. ..+..++. .+|++++|+|++.. .....++.++...++|+++++||+|+.
T Consensus 59 ~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 59 IYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp CSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred cCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 99886 33445555 59999999999862 233444566677899999999999963
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-15 Score=147.57 Aligned_cols=156 Identities=17% Similarity=0.091 Sum_probs=107.3
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|++.... .. ..|+......+...+..+.+|||||+++|...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~---------------~~----~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 67 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV---------------TT----IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPY 67 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC---------------CC----CCCSSEEEEEEEETTEEEEEEEECCCGGGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC---------------Cc----CCcCccceEEEEECCEEEEEEECCCChhhhHH
Confidence 467889999999999999999864311 01 11222333445666889999999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+.+...+. .......
T Consensus 68 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~~~~~~~----~~~~~~~ 141 (171)
T 1upt_A 68 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQAMT-SSEMANSLG----LPALKDR 141 (171)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HHHHHHHHT----GGGCTTS
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCCCC-HHHHHHHhC----chhccCC
Confidence 8888899999999999988653 333344443332 3666 999999999976321 122222221 1111223
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.++++++||++| .|+++++++|.+.+
T Consensus 142 ~~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 167 (171)
T 1upt_A 142 KWQIFKTSATKG-----------TGLDEAMEWLVETL 167 (171)
T ss_dssp CEEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred ceEEEECcCCCC-----------cCHHHHHHHHHHHH
Confidence 468999999987 38899999887644
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-15 Score=155.19 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=109.3
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 87 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFT--------------PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI 87 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--------------CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--------------CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh
Confidence 467899999999999999999974311 111123344544444444434567899999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..+++.+|++|+|+|+++... ....+++..+... ++| +++|+||+|+.+..... .++..++.+.++
T Consensus 88 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~----- 158 (189)
T 2gf9_A 88 TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDERVVP---AEDGRRLADDLG----- 158 (189)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT-----
T ss_pred HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccCCC---HHHHHHHHHHcC-----
Confidence 8888999999999999987433 2334455555554 566 99999999997532111 123344444444
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++++++|.+.+
T Consensus 159 ~~~~~~Sa~~g-----------~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 159 FEFFEASAKEN-----------INVKQVFERLVDVI 183 (189)
T ss_dssp CEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred CeEEEEECCCC-----------CCHHHHHHHHHHHH
Confidence 47999999987 38888888887643
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=146.29 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=104.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||+++|++...... .....+.+.. ....+......+.+|||||+++|...+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 68 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRES--------------YIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQ 68 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSS--------------CCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHH
Confidence 5678899999999999999997431100 0111122221 111222223468899999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV-----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~-----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
..++..+|++++|+|+++... .+...++..+... ++| +++|+||+|+.+..+... .+...+.+..+
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~v~~---~~~~~~~~~~~---- 140 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSREVQS---SEAEALARTWK---- 140 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCCSCH---HHHHHHHHHHT----
T ss_pred HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccccccCH---HHHHHHHHHhC----
Confidence 999999999999999987432 2233444444432 577 999999999875322111 12223333333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .|+++++++|.+.+.
T Consensus 141 -~~~~~~Sa~~~-----------~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 141 -CAFMETSAKLN-----------HNVKELFQELLNLEK 166 (172)
T ss_dssp -CEEEECBTTTT-----------BSHHHHHHHHHHTCC
T ss_pred -CeEEEecCCCC-----------cCHHHHHHHHHHHHh
Confidence 47899999987 389999999988654
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=149.55 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=80.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... ..|+...... .+..++..+.+++||||
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~--------------------~~t~~~~~~~-~~~~~~~~~~~~i~Dt~ 79 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY--------------------VPTVFENFSH-VMKYKNEEFILHLWDTA 79 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--------------------CCCSEEEEEE-EEEETTEEEEEEEEEEC
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc--------------------CCeeeeeeEE-EEEECCEEEEEEEEECC
Confidence 34568999999999999999999753311000 0011111111 12223346778999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHH-HHhh--cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWF-QSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~-~~~~--~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++....... ..|. .+.. .++|+++|+||+|+..
T Consensus 80 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 80 GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred CcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 9999999999999999999999999986443332 3333 3332 3689999999999864
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-15 Score=153.00 Aligned_cols=158 Identities=18% Similarity=0.114 Sum_probs=107.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++..... ......|.+.......+......+.||||||+++|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSH--------------DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA 89 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCS--------------SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh
Confidence 45788999999999999999999743211 1112234444444444443456789999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++|+|+|+++.... ....++..+... ++| +++|+||+|+.+..... ..+...+++..+
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 161 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKSDLSQAREVP---TEEARMFAENNG---- 161 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT----
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECCCcccccccC---HHHHHHHHHHcC----
Confidence 888999999999999999874432 223444444433 556 89999999997532111 123334444443
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++| .|+++++++|.+.
T Consensus 162 -~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 185 (193)
T 2oil_A 162 -LLFLETSALDS-----------TNVELAFETVLKE 185 (193)
T ss_dssp -CEEEEECTTTC-----------TTHHHHHHHHHHH
T ss_pred -CEEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 57999999987 3888888887653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-15 Score=150.76 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=106.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++.... .+....++.+.....+..++ ..+.||||||+++|.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 73 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFK----------------DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR 73 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC----------------TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 467889999999999999999874311 11122334444444555555 578899999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..++..+|++|+|+|+++....+. ..++..+.. .++| +++|+||+|+.+..... ..+...+.+..+
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 146 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREVT---FLEASRFAQENE--- 146 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT---
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHHcC---
Confidence 999999999999999999987543222 233333333 3566 99999999996522110 122334444443
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 147 --~~~~~~Sa~~~~-----------gi~~l~~~l~~~~ 171 (186)
T 2bme_A 147 --LMFLETSALTGE-----------NVEEAFVQCARKI 171 (186)
T ss_dssp --CEEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred --CEEEEecCCCCC-----------CHHHHHHHHHHHH
Confidence 579999999873 7888888776543
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=148.78 Aligned_cols=161 Identities=14% Similarity=0.124 Sum_probs=104.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe---eCCeEEEEEecCChhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE---SENKHYAHVDCPGHAD 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~---~~~~~i~liDtpG~~~ 726 (1021)
+.+.+.++|..++|||||+++|.+.... +...|.+.......+. .....+.+|||||+++
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSP-----------------NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCG-----------------GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCC-----------------cceeeeccccceeeeeccCCCeeEEEEEECCCCHH
Confidence 4567888999999999999988763211 1122222222222222 3446899999999999
Q ss_pred hHHHH---HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEeeccccchhhHH---HHHHHH-HH
Q psy5021 727 YIKNM---ITGAAQMDGAILVCSAVDGPMPQTREHILLARQV-----GVPNIVVFLNKADCVQDKELL---DLVEME-IR 794 (1021)
Q Consensus 727 ~~~~~---~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~-----~ip~iIvviNK~Dl~~~~~~~---~~~~~~-~~ 794 (1021)
|...+ ..+++.+|++|+|+|+++........+..++... ++| +++|+||+|+.+.+.+. ..+..+ ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~v~~~~~~ 160 (196)
T 3llu_A 82 FFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDGLSDDHKIETQRDIHQRAND 160 (196)
T ss_dssp TTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEeccccCchhhhhHHHhHHHHHHHH
Confidence 98777 7889999999999999987333333333333332 666 99999999998643221 122222 22
Q ss_pred HhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 795 ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 795 ~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++.+ .......++++++||++ . |++++++.|.+.
T Consensus 161 ~~~~-~~~~~~~~~~~e~Sa~~-~-----------~v~~~f~~l~~~ 194 (196)
T 3llu_A 161 DLAD-AGLEKLHLSFYLTSIYD-H-----------SIFEAFSKVVQK 194 (196)
T ss_dssp HHHH-TTCTTSCEEEEEECTTS-T-----------HHHHHHHHHHHH
T ss_pred HHHH-hhhhcCCcceEEEEech-h-----------hHHHHHHHHHHH
Confidence 3333 11122347899999996 4 889999888653
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-15 Score=150.78 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=104.8
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
.+.+.+.++|.+++|||||+++|++..... ......|. +.....+..++ ..+.||||||+++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPD--------------RTEATIGV--DFRERAVDIDGERIKIQLWDTAGQER 81 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS--------------SCCCCCSC--CEEEEEEEETTEEEEEEEEECCCSHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCCcce--EEEEEEEEECCEEEEEEEEECCCchh
Confidence 356788999999999999999998743110 11122233 33333344444 5789999999999
Q ss_pred hH-HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 727 YI-KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 727 ~~-~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
|. ..+..+++.+|++|+|+|+++.... ....++..+.. .++| +++|+||+|+.+..+.. .++...+.+..
T Consensus 82 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~ 157 (189)
T 1z06_A 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQVP---TDLAQKFADTH 157 (189)
T ss_dssp HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHT
T ss_pred hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceeC---HHHHHHHHHHc
Confidence 98 7778888999999999999874332 22333333333 3567 99999999996532111 12233444444
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+ ++++++||+++. +..+++++++.|.+.+
T Consensus 158 ~-----~~~~~~Sa~~~~--------~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 158 S-----MPLFETSAKNPN--------DNDHVEAIFMTLAHKL 186 (189)
T ss_dssp T-----CCEEECCSSSGG--------GGSCHHHHHHHHC---
T ss_pred C-----CEEEEEeCCcCC--------cccCHHHHHHHHHHHH
Confidence 4 468999999872 1238899999987654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=150.31 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=77.2
Q ss_pred eEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-cCCCeEEEEEeeccccchhhHHHHHHH
Q psy5021 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-VGVPNIVVFLNKADCVQDKELLDLVEM 791 (1021)
Q Consensus 714 ~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-~~ip~iIvviNK~Dl~~~~~~~~~~~~ 791 (1021)
..+.||||||+++|...+..+++.+|++|+|+|++++...+. ..++..+.. .+.| +++|+||+|+....... +
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~~~----~ 167 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKIDKNKFQVDI----L 167 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCSCH----H
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCCcccccCCH----H
Confidence 678999999999999999999999999999999998654333 334444444 4555 99999999942211112 3
Q ss_pred HHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 792 EIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 792 ~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++.++++..+ ++++++||+++. ++++++++|.+.
T Consensus 168 ~~~~~~~~~~-----~~~~~~Sa~~~~-----------~i~~l~~~l~~~ 201 (208)
T 3clv_A 168 EVQKYAQDNN-----LLFIQTSAKTGT-----------NIKNIFYMLAEE 201 (208)
T ss_dssp HHHHHHHHTT-----CEEEEECTTTCT-----------THHHHHHHHHHH
T ss_pred HHHHHHHHcC-----CcEEEEecCCCC-----------CHHHHHHHHHHH
Confidence 3444554443 589999999873 888888888653
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=145.40 Aligned_cols=156 Identities=17% Similarity=0.117 Sum_probs=101.4
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
++.+.+.++|.+++|||||+++|++..... ......+.+. ...+..++ ..+.+|||||+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~~~l~D~~G~~~ 64 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVE--------------DYEPTKADSY---RKKVVLDGEEVQIDILDTAGQED 64 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCS--------------CCCTTCCEEE---EEEEEETTEEEEEEEEECCC---
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCC--------------CCCCCcceEE---EEEEEECCEEEEEEEEECCCcch
Confidence 345678899999999999999999743110 0011112111 22233344 4788999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
|...+..+++.+|++++|+|+++..... ...++..+... ++| +++|+||+|+.+..+. ..++...+++..+
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 140 (168)
T 1u8z_A 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRADQWN 140 (168)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCCS---CHHHHHHHHHHHT
T ss_pred hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccccCcc---CHHHHHHHHHHcC
Confidence 9999999999999999999998743322 23333333332 677 9999999999753211 1123344444444
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++| .|+++++++|.+.
T Consensus 141 -----~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 141 -----VNYVETSAKTR-----------ANVDKVFFDLMRE 164 (168)
T ss_dssp -----CEEEECCTTTC-----------TTHHHHHHHHHHH
T ss_pred -----CeEEEeCCCCC-----------CCHHHHHHHHHHH
Confidence 47999999987 3889999888654
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-15 Score=170.78 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=88.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+|+|.+|+|||||+++|+.....+.. ...|+|.+.....+.+. +..+.||||||+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs-----------------~~~gTT~d~~~~~i~~~----g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT-----------------DIPGTTRDVISEEIVIR----GILFRIVDTAGVR 302 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCC-----------------CSSCCSSCSCCEEEEET----TEEEEEEESSCCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccC-----------------CCCCeeeeeEEEEEecC----CeEEEEEECCCcc
Confidence 47999999999999999999876433222 12345555555566676 7889999999998
Q ss_pred -CcH--------HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 89 -DFT--------IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 -~f~--------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
++. ..+..+++.+|++|+|+|++++...+..++|+.+ .++|+++|+||+|+..
T Consensus 303 ~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 303 SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp SSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred ccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 664 3456788999999999999998877777787765 4889999999999863
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-14 Score=148.48 Aligned_cols=116 Identities=16% Similarity=0.067 Sum_probs=76.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|..|+|||||+++|+...-. . . ...+.|.......+.+. +..+.|||||
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~--~----------~------~~~~~t~~~~~~~~~~~----~~~~~l~Dtp 84 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD--V----------Q------SYSFTTKNLYVGHFDHK----LNKYQIIDTP 84 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE--E----------E------CC-----CEEEEEEEET----TEEEEEEECT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--c----------C------CCCCcceeeeeeeeecC----CCeEEEEECC
Confidence 45689999999999999999999632110 0 0 01223433333334444 6889999999
Q ss_pred CCCCc---------HHHHHHHhhccCeEEEEEeCCCCCchh---HHHHHHHHhhc--CCCEEEEEeCcCCCC
Q psy5021 86 GHVDF---------TIEVERSLRVLDGAVIIICASSGIQPQ---TETVWFQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f---------~~~~~~~l~~~D~~ilvvda~~g~~~~---t~~~~~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
|+.++ ...+......+|++|+|+|+++..... ....+..+... ++|+++|+||+|+..
T Consensus 85 G~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 85 GLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp TTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred CCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 99432 122334467889999999999865432 33445555554 899999999999863
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=150.68 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=105.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++... ..+....++.+.....+..++ ..+.||||||+++|.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 92 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAF----------------SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR 92 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEETTEEEEEEEECCTTCGGGH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCC----------------CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 46789999999999999999987431 111112223334344455555 578899999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++... .....++..+.. .++| +++|+||+|+.+..... .+++.++++..++
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~~-- 166 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELREVS---LAEAQSLAEHYDI-- 166 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHTTC--
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCccccccccC---HHHHHHHHHHcCC--
Confidence 999999999999999999987433 223344444444 2466 89999999997521110 1234445554443
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++| .|+++++++|.+.+
T Consensus 167 --~~~~~~SA~~g-----------~gi~~l~~~l~~~i 191 (201)
T 2hup_A 167 --LCAIETSAKDS-----------SNVEEAFLRVATEL 191 (201)
T ss_dssp --SEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 27899999987 38888988887654
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-15 Score=153.56 Aligned_cols=169 Identities=17% Similarity=0.112 Sum_probs=108.3
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEE-EEeeCCeEEEEEecCChhhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV-EYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~-~~~~~~~~i~liDtpG~~~~ 727 (1021)
-+.+.+.++|.+++|||||++.|.+............ ......++.|.+...... .++.....+.+|||||+++|
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVS----LATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEE----EECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccc----cccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 3457788999999999999987775322111100000 000011112222211111 22233457899999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH---------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQ---------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~---------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
...+..+++.+|++|+|+|++++...+..+.+..+.. .++| +++|+||+|+.+.. ..+++.++++
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~-----~~~~~~~~~~ 161 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLPDAL-----PVEMVRAVVD 161 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTSTTCC-----CHHHHHHHHC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhccccc-----CHHHHHHHHH
Confidence 9999999999999999999997655555444433322 3677 99999999997521 1234555665
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++ .+++++||++| .|+++++++|.+.+
T Consensus 162 ~~~~----~~~~~~Sa~~~-----------~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 162 PEGK----FPVLEAVATEG-----------KGVFETLKEVSRLV 190 (198)
T ss_dssp TTCC----SCEEECBGGGT-----------BTHHHHHHHHHHHH
T ss_pred hcCC----ceEEEEecCCC-----------cCHHHHHHHHHHHH
Confidence 5543 27999999987 38888888886543
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-15 Score=152.01 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=108.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFD--------------PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCC--------------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC--------------ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh
Confidence 45678899999999999999999874311 1112233444444444444445678999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+.+... ++...+++..+
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~-- 151 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKIDKENREVDR----NEGLKFARKHS-- 151 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSCCSCH----HHHHHHHHHTT--
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECCcCcccccCH----HHHHHHHHHcC--
Confidence 888999999999999999987543222 3333444332 455 89999999995422111 22333444443
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||+++ .++++++++|.+.+
T Consensus 152 ---~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 152 ---MLFIEASAKTC-----------DGVQCAFEELVEKI 176 (195)
T ss_dssp ---CEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred ---CEEEEecCCCC-----------CCHHHHHHHHHHHH
Confidence 57999999987 38888888887654
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-15 Score=151.97 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=104.1
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+...++++|.+++|||||+++|++.... .... |+......+..++..+.+|||||+++|.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~---------------~~~~----t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG---------------QHVP----TLHPTSEELTIAGMTFTTFDLGGHIQAR 83 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC---------------------C----CCCCSCEEEEETTEEEEEEEECC----C
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC---------------ccCC----CCCceeEEEEECCEEEEEEECCCcHhhH
Confidence 45678899999999999999999874311 0011 2222234556677899999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc--
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD-- 801 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~-- 801 (1021)
..+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+. ...+ ++.+.+....
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~~----~~~~~~~~~~~~ 157 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDRPEA-ISEE----RLREMFGLYGQT 157 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC-CCHH----HHHHHHTCTTTC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCcccc-CCHH----HHHHHhCccccc
Confidence 887788899999999999987543 333444443332 3677 9999999999751 1122 2333332211
Q ss_pred -------cC---CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 802 -------FD---GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 802 -------~~---~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+. ....+++++||++| +|+++++++|.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~SA~~g-----------~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 158 TGKGSVSLKELNARPLEVFMCSVLKR-----------QGYGEGFRWMAQYI 197 (198)
T ss_dssp CCSSCCCTTTCCSCCEEEEECBTTTT-----------BSHHHHHHHHHTTC
T ss_pred ccccccccccccCceEEEEEEECCCC-----------CCHHHHHHHHHHhc
Confidence 10 12468999999988 48999999987643
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=151.75 Aligned_cols=114 Identities=20% Similarity=0.180 Sum_probs=79.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+++|..++|||||+++++...- .. ++ -.|+........+..++..+.++||||+|+.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f--~~-----------~~-------~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSF--DN-----------TY-------QATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--C----------------------------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCC--CC-----------Cc-------CCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 4699999999999999999974211 00 01 1233333333333444557889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH---hhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~---~~~~~p~iiviNK~D~~ 142 (1021)
+|...+..+++.+|++++|+|.++........-| ..+ ...++|+++|.||+|+.
T Consensus 74 ~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 9999999999999999999999875443333333 333 23578999999999985
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.5e-15 Score=150.15 Aligned_cols=157 Identities=19% Similarity=0.102 Sum_probs=105.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeee-EEEEeeC-----------CeEEE
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTS-HVEYESE-----------NKHYA 717 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~-~~~~~~~-----------~~~i~ 717 (1021)
+.+.+.++|.+++|||||+++|++..... ......|. +.. ...+... ...+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS--------------KFITTVGI--DFREKRVVYRANGPDGAVGRGQRIHLQ 73 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------SCCCCCSE--EEEEEEEEECTTSCCCSSCCCEEEEEE
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc--------------Ccccccce--eeeeEEEEEecCCcccccccCcEEEEE
Confidence 34678899999999999999999743110 01111222 222 2223333 34789
Q ss_pred EEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHH
Q psy5021 718 HVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEME 792 (1021)
Q Consensus 718 liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~ 792 (1021)
||||||+++|...+..+++.+|++|+|+|+++....+. ..++..+.. .++| +++|+||+|+.+..... .++
T Consensus 74 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~ 149 (195)
T 3bc1_A 74 LWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAVK---EEE 149 (195)
T ss_dssp EEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCCSC---HHH
T ss_pred EEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccC---HHH
Confidence 99999999999999999999999999999987544332 344444443 3667 99999999997522111 123
Q ss_pred HHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 793 IRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 793 ~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.++.+..+ ++++++||+++. +++++++.|.+.+
T Consensus 150 ~~~~~~~~~-----~~~~~~Sa~~~~-----------~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 150 ARELAEKYG-----IPYFETSAANGT-----------NISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHHHT-----CCEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred HHHHHHHcC-----CCEEEEECCCCC-----------CHHHHHHHHHHHH
Confidence 344444444 468999999873 8888888876543
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-15 Score=150.66 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=107.4
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++.... .+...+.+.+.....+..++ ..+.+|||||+++|.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 72 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR 72 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh
Confidence 467889999999999999999974311 12223445555555566666 678899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
..+..++..+|++++|+|++++...+. ..++..+... ++| +|+|+||+|+.+...... .+...+....+
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~---- 144 (181)
T 3tw8_B 73 TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDDPERKVVET---EDAYKFAGQMG---- 144 (181)
T ss_dssp SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSE-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT----
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCCCchhcccCH---HHHHHHHHHcC----
Confidence 888888999999999999998543332 2333333333 356 899999999875321111 22333444444
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++++++|.+.+
T Consensus 145 -~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 145 -IQLFETSAKEN-----------VNVEEMFNCITELV 169 (181)
T ss_dssp -CCEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred -CeEEEEECCCC-----------CCHHHHHHHHHHHH
Confidence 46899999987 38888888887643
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=152.21 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=106.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh-----
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH----- 724 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~----- 724 (1021)
+...+.++|.+++|||||+++|++..... ....+.|.+.....+...+..+.||||||+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 91 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDV----------------QSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAF 91 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEE----------------ECC-----CEEEEEEEETTEEEEEEECTTTTTSCG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc----------------CCCCCcceeeeeeeeecCCCeEEEEECCCCcCccc
Confidence 45788999999999999999999753211 112344555555566667789999999999
Q ss_pred -hhh---HHHHHHHhhhCCEEEEEEECCCCCcHH---HHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 725 -ADY---IKNMITGAAQMDGAILVCSAVDGPMPQ---TREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 725 -~~~---~~~~~~~~~~aD~ailVvDa~~g~~~q---t~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
++. ...+...+..+|++|+|+|+++....+ ..+++..+... ++| +++|+||+|+.+...........+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~ 170 (228)
T 2qu8_A 92 ENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKIDKCNMDSLSIDNKLLIKQ 170 (228)
T ss_dssp GGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECGGGCC--CCCHHHHHHHHH
T ss_pred chhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCcccCCchhhHHHHHHHHHH
Confidence 442 122334467889999999999865422 23445555544 777 99999999997633222222334444
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.+..+ ..++++++||++| .|+++++++|.+.+
T Consensus 171 ~~~~~~---~~~~~~~~SA~~g-----------~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 171 ILDNVK---NPIKFSSFSTLTG-----------VGVEQAKITACELL 203 (228)
T ss_dssp HHHHCC---SCEEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HHHhcC---CCceEEEEecccC-----------CCHHHHHHHHHHHH
Confidence 544433 1268999999987 38888888887644
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=147.12 Aligned_cols=157 Identities=15% Similarity=0.057 Sum_probs=104.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.... .+...+++.+.....+..++ ..+.||||||+++|
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 69 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD----------------TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC----------------C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 3467889999999999999999874311 11122233333344455555 47889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
...+..+++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+.+.+...+ ++.++++.
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~----~~~~~~~~ 144 (177)
T 1wms_A 70 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISERQVSTE----EAQAWCRD 144 (177)
T ss_dssp HHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSCSSCHH----HHHHHHHH
T ss_pred hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcccccccCHH----HHHHHHHh
Confidence 9988888999999999999987543222 223333322 4567 899999999874221122 23333332
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.. ..+++++||++| .|++++++.|.+.+
T Consensus 145 ~~----~~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 145 NG----DYPYFETSAKDA-----------TNVAAAFEEAVRRV 172 (177)
T ss_dssp TT----CCCEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred cC----CceEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 11 357999999987 38888888887643
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-15 Score=152.32 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=105.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 84 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR 84 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCC--------------C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC--------------CCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhh
Confidence 34578899999999999999999974311 1112223333333333332223578999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++....+ ...++..+... ++| +++|+||+|+.+..... .++...+.+..+
T Consensus 85 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 157 (191)
T 2a5j_A 85 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDVK---REEGEAFAREHG--- 157 (191)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT---
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCccccC---HHHHHHHHHHcC---
Confidence 88888999999999999998744322 23444444443 566 89999999997522111 123334444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||+++ .|++++++.|.+.
T Consensus 158 --~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 158 --LIFMETSAKTA-----------CNVEEAFINTAKE 181 (191)
T ss_dssp --CEEEEECTTTC-----------TTHHHHHHHHHHH
T ss_pred --CEEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 47899999987 3888888887654
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-16 Score=162.92 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=80.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+... ...+...+++.......+.+. +..+.+++|||
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~Dt 89 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDT------------------YTESYISTIGVDFKIRTIELD--GKTIKLQIWDT 89 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCC------------------CCCHHHHHHCCSEEEEEEEET--TEEEEEEEECC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCC------------------CCCCcCCcccceEEEEEEEEC--CEEEEEEEEEC
Confidence 4567899999999999999999984211 011122333433333334443 33578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 90 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp TTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred CCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 99999998888899999999999999986554444334 33333 278999999999985
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-15 Score=148.91 Aligned_cols=156 Identities=18% Similarity=0.098 Sum_probs=98.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++.... .+....++.+.....+..++ ..+.+|||||+++|.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 69 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFN----------------DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH 69 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCC----------------SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC----------------cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh
Confidence 467889999999999999999974311 01111222233333344433 467899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+.+..... .++..++.+..+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 142 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHVS---IQEAESYAESVG--- 142 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT---
T ss_pred hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccccC---HHHHHHHHHHcC---
Confidence 88888889999999999998754322 2333333333 3566 89999999997532111 123344444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++++++|.+.+
T Consensus 143 --~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 143 --AKHYHTSAKQN-----------KGIEELFLDLCKRM 167 (170)
T ss_dssp --CEEEEEBTTTT-----------BSHHHHHHHHHHHH
T ss_pred --CeEEEecCCCC-----------CCHHHHHHHHHHHH
Confidence 57899999987 38899998887543
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-15 Score=155.03 Aligned_cols=157 Identities=18% Similarity=0.114 Sum_probs=103.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC------------CeEEE
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE------------NKHYA 717 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~------------~~~i~ 717 (1021)
+.+.+.++|.+++|||||+++|++.... .+....++.+.....+..+ ...+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFN----------------PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 87 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCC----------------CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCC----------------cCCCCceeEEEEEEEEEECCccccccccCceeEEEE
Confidence 3467889999999999999999974311 0111122222222223222 45789
Q ss_pred EEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHH
Q psy5021 718 HVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEME 792 (1021)
Q Consensus 718 liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~ 792 (1021)
||||||+++|...+..+++.+|++|+|+|+++....+.. .++..+.. .++| +++|+||+|+.+..... ..+
T Consensus 88 l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v~---~~~ 163 (217)
T 2f7s_A 88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREVN---ERQ 163 (217)
T ss_dssp EEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTCGGGCCSC---HHH
T ss_pred EEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCccccccccC---HHH
Confidence 999999999999999999999999999999874332222 22222221 3456 99999999997532211 123
Q ss_pred HHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 793 IRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 793 ~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++.+.++ ++++++||+++. ++++++++|.+.+
T Consensus 164 ~~~~~~~~~-----~~~~~~Sa~~g~-----------gi~~l~~~l~~~i 197 (217)
T 2f7s_A 164 ARELADKYG-----IPYFETSAATGQ-----------NVEKAVETLLDLI 197 (217)
T ss_dssp HHHHHHHTT-----CCEEEEBTTTTB-----------THHHHHHHHHHHH
T ss_pred HHHHHHHCC-----CcEEEEECCCCC-----------CHHHHHHHHHHHH
Confidence 444444444 468999999873 7888888776543
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-15 Score=152.40 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=108.3
Q ss_pred chhhhccCCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eE
Q psy5021 638 PLRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KH 715 (1021)
Q Consensus 638 P~~e~~~~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~ 715 (1021)
|....-.|....+.+.+.++|.+++|||||+++|++..... ......+.+.. ..+..++ ..
T Consensus 12 ~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~---~~~~~~~~~~~ 74 (207)
T 2fv8_A 12 DLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPE--------------VYVPTVFENYV---ADIEVDGKQVE 74 (207)
T ss_dssp -------CGGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE---EEEEETTEEEE
T ss_pred cccccccccccccCcEEEEECcCCCCHHHHHHHHhcCCCCC--------------cCCCcccceEE---EEEEECCEEEE
Confidence 33333345555667889999999999999999999743110 01111122221 1233444 46
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHH-
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLDLVE- 790 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~- 790 (1021)
+.||||||+++|...+..++..+|++++|+|+++....+. ..++..+... ++| +++|+||+|+.+.....+.+.
T Consensus 75 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~ 153 (207)
T 2fv8_A 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSDEHVRTELAR 153 (207)
T ss_dssp EEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhccccchhhhhh
Confidence 8899999999998888888899999999999987433222 3344455544 778 999999999976332222111
Q ss_pred --------HHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 791 --------MEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 791 --------~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+...+.+.++. .+++++||++| .|+++++++|.+.+
T Consensus 154 ~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g-----------~gi~el~~~l~~~i 198 (207)
T 2fv8_A 154 MKQEPVRTDDGRAMAVRIQA----YDYLECSAKTK-----------EGVREVFETATRAA 198 (207)
T ss_dssp TTCCCCCHHHHHHHHHHTTC----SEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHhcCC----CEEEEeeCCCC-----------CCHHHHHHHHHHHH
Confidence 122233333332 37899999987 38899999887654
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-15 Score=150.04 Aligned_cols=158 Identities=11% Similarity=0.104 Sum_probs=99.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++..... .+...+++.+.....+..++ ..+.+|||||+++|
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 73 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLA---------------GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF 73 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC---------------CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC---------------CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 45778999999999999999998743210 01112233333333344444 47889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
...+..++..+|++++|+|+++....+ ..+++..+.. .++| +++|+||+|+.+..... .++...+.+..+
T Consensus 74 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 147 (180)
T 2g6b_A 74 RSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERVVK---REDGEKLAKEYG-- 147 (180)
T ss_dssp -----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCCSC---HHHHHHHHHHHT--
T ss_pred HHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCcccccC---HHHHHHHHHHcC--
Confidence 988888899999999999998754322 2344444444 3566 99999999997532111 122333444444
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||+++ .|+++++++|.+.+
T Consensus 148 ---~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 148 ---LPFMETSAKTG-----------LNVDLAFTAIAKEL 172 (180)
T ss_dssp ---CCEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 46899999987 38888988887644
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.9e-15 Score=149.61 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=107.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+...++++|.+++|||||+++|++.... .. ..|+......+..++..+.+|||||+++|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~---------------~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 82 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA---------------TL----QPTWHPTSEELAIGNIKFTTFDLGGHIQARR 82 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC---------------CC----CCCCSCEEEEEEETTEEEEEEECCCSGGGTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC---------------cc----ccCCCCCeEEEEECCEEEEEEECCCCHHHHH
Confidence 4567899999999999999999974311 00 1122233445666788999999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc---
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD--- 801 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~--- 801 (1021)
.+..+++.+|++++|+|++++.. ....+++..+.. .++| +++|+||+|+.+. ... +++.+.+....
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~----~~~~~~~~~~~~~~ 156 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNA-VSE----AELRSALGLLNTTG 156 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC-CCH----HHHHHHTTCSSCCC
T ss_pred HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC-CCH----HHHHHHhCCccccc
Confidence 87788899999999999998653 233344443332 3677 9999999999751 112 23333333221
Q ss_pred ----cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 802 ----FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 802 ----~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.....++++++||++| +|+++++++|.+.
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~g-----------~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 157 SQRIEGQRPVEVFMCSVVMR-----------NGYLEAFQWLSQY 189 (190)
T ss_dssp ---CCSSCCEEEEECBTTTT-----------BSHHHHHHHHHTT
T ss_pred cccccccceEEEEEeECCcC-----------CCHHHHHHHHHhh
Confidence 0123478999999988 4899999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=147.96 Aligned_cols=115 Identities=19% Similarity=0.101 Sum_probs=76.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... . .|+.... ...+..++..+.+.+||||
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-------------~-------~t~~~~~-~~~~~~~~~~~~~~l~Dt~ 84 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-------------D-------PTLESTY-RHQATIDDEVVSMEILDTA 84 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-------------C-------TTCCEEE-EEEEEETTEEEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc-------------C-------CCCCceE-EEEEEECCEEEEEEEEECC
Confidence 34578999999999999999999753221100 0 0111111 1111223336789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHH----HhhcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQ----SQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~----~~~~~~p~iiviNK~D~~ 142 (1021)
|+.+ ...+..+++.+|++|+|+|+++...... ...+.. ....++|+++|+||+|+.
T Consensus 85 G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 85 GQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp CCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred CCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 9998 7778889999999999999987432211 222222 233689999999999985
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=148.08 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=79.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee-eEEEeecccCceeEEEEcCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS-VSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~i~liDtP 85 (1021)
...+|+++|+.|+|||||+++|......... .. |+.... ..+.+ ++..+.+.+||||
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~------~~--------------t~~~~~~~~~~~--~~~~~~l~i~Dt~ 81 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY------VP--------------TVFENYIADIEV--DGKQVELALWDTA 81 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSC------CC--------------SSCCCCEEEEEE--TTEEEEEEEECCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCccc------CC--------------cccceEEEEEEE--CCEEEEEEEEECC
Confidence 3468999999999999999999753321110 00 111111 11222 2335789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHhhc--CCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQKY--KVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~~~--~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++|+|+|+++....+.. ..| ..+... ++|+++|+||+|+...
T Consensus 82 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 82 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred CchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 9999988888899999999999999875333322 233 333333 8999999999998643
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=151.18 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=99.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHAD 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~ 726 (1021)
+.+.+.++|.+++|||||+++|++..... ....++.+... +..+ +..+.+|||||+++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~-----------------~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~ 66 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRD-----------------TQTSITDSSAI--YKVNNNRGNSLTLIDLPGHES 66 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCC-----------------BCCCCSCEEEE--EECSSTTCCEEEEEECCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-----------------ccCCcceeeEE--EEecCCCccEEEEEECCCChh
Confidence 45678899999999999999999743100 00112222222 4444 57899999999999
Q ss_pred hHH-HHHHHhhhCCEEEEEEECCCCCcHHHH---HHHHH-HHH-----cCCCeEEEEEeeccccchhhHHHHHHHHHHHh
Q psy5021 727 YIK-NMITGAAQMDGAILVCSAVDGPMPQTR---EHILL-ARQ-----VGVPNIVVFLNKADCVQDKELLDLVEMEIREL 796 (1021)
Q Consensus 727 ~~~-~~~~~~~~aD~ailVvDa~~g~~~qt~---e~l~~-~~~-----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~ 796 (1021)
|.. .+..+++.+|++|+|+|+++ ...+.. +.|.. +.. .++| +++|+||+|+.+... .+.+.+.+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~~~~~l~~~ 143 (214)
T 2fh5_B 67 LRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAMAKS-AKLIQQQLEKE 143 (214)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTTCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCCccc-HHHHHHHHHHH
Confidence 988 56677899999999999986 212222 22222 111 2466 999999999975322 23333333333
Q ss_pred hh---------------------ccc-----cC----CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 797 LT---------------------EYD-----FD----GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 797 l~---------------------~~~-----~~----~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+. ..+ |. +..++++++||++|.+.. ..+|+++++++|.+
T Consensus 144 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~-----~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 144 LNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDT-----GSADIQDLEKWLAK 212 (214)
T ss_dssp HHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC------------CCBCHHHHHHHHH
T ss_pred HHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccc-----cccChHHHHHHHHH
Confidence 32 011 00 015789999999872111 11378889988865
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-15 Score=162.77 Aligned_cols=152 Identities=19% Similarity=0.223 Sum_probs=107.6
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH---
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI--- 728 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~--- 728 (1021)
..++++|.+|+|||||+|+|++..... ....|+|++.....+.. +..+.+|||||+.+|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v----------------~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~ 66 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRV----------------GNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS 66 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCC----------------CSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcc----------------cCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCC
Confidence 568899999999999999999743211 12237788777776766 7789999999998874
Q ss_pred ---HHHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 ---KNMITGAA--QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ---~~~~~~~~--~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..++. .+|++++|+|+++. .....++..+...++| +++|+||+|+...... . .+...+.+.++
T Consensus 67 ~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~-~---~~~~~l~~~lg-- 137 (272)
T 3b1v_A 67 PEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIP-VTIALNMIDVLDGQGK-K---INVDKLSYHLG-- 137 (272)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSC-EEEEEECHHHHHHTTC-C---CCHHHHHHHHT--
T ss_pred hHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCC-EEEEEEChhhCCcCCc-H---HHHHHHHHHcC--
Confidence 23344454 59999999999862 2334445556667999 9999999998642110 0 12223333344
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .|+++|+++|.+.+.
T Consensus 138 ---~~vi~~SA~~g-----------~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 138 ---VPVVATSALKQ-----------TGVDQVVKKAAHTTT 163 (272)
T ss_dssp ---SCEEECBTTTT-----------BSHHHHHHHHHHSCT
T ss_pred ---CCEEEEEccCC-----------CCHHHHHHHHHHHHh
Confidence 47999999987 489999999987553
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.3e-15 Score=152.50 Aligned_cols=157 Identities=18% Similarity=0.071 Sum_probs=106.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.... .+....++.+.....+..++ ..+.||||||+++|
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 88 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP----------------PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 88 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC----------------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC----------------CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 3567899999999999999999974311 11112233444444455555 46889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
...+..+++.+|++|+|+|+++....+ ...++..+... ++| +++|+||+|+.+..... .++...+.+..+
T Consensus 89 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~-- 162 (201)
T 2ew1_A 89 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERREVS---QQRAEEFSEAQD-- 162 (201)
T ss_dssp HHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCSSC---HHHHHHHHHHHT--
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHcC--
Confidence 998888899999999999998744322 23444444443 456 89999999997522111 122333333333
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.|.+.+
T Consensus 163 ---~~~~~~Sa~~g~-----------gv~~l~~~l~~~i 187 (201)
T 2ew1_A 163 ---MYYLETSAKESD-----------NVEKLFLDLACRL 187 (201)
T ss_dssp ---CCEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 468999999873 8888888876544
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=149.60 Aligned_cols=115 Identities=15% Similarity=0.088 Sum_probs=78.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|+.|+|||||+++|+........ .+ .-+.+.. ..+.+ ++..+.+.+|||||+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-------------~~---t~~~~~~---~~~~~--~~~~~~~~i~Dt~G~ 83 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVY-------------VP---TVFENYV---ADIEV--DGKQVELALWDTAGQ 83 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-----------------------CCEEE---EEEEE--TTEEEEEEEEECTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcC-------------CC---cccceEE---EEEEE--CCEEEEEEEEECCCc
Confidence 468999999999999999999753221100 00 0011111 11222 333578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHhhc--CCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
.+|...+..+++.+|++|+|+|+++....+.. ..| ..+... ++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 84 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp TTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred HHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 99998888899999999999999875332222 223 333333 899999999999864
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=146.74 Aligned_cols=150 Identities=18% Similarity=0.145 Sum_probs=105.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh----
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY---- 727 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~---- 727 (1021)
..++++|.+++|||||+++|++..... .....|+|.+.....+..++..+.+|||||++++
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 69 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAI---------------VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 69 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC---------------CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcce---------------eeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHH
Confidence 467899999999999999999743111 1112355666656667777888999999998653
Q ss_pred ----HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 728 ----IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 728 ----~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
...+..+++.+|++++|+|+++....+..+++..+... ++| +|+|+||+|+.+... .+.+.
T Consensus 70 ~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~----------~~~~~- 137 (172)
T 2gj8_A 70 ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP-ITVVRNKADITGETL----------GMSEV- 137 (172)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCC-EEEEEECHHHHCCCC----------EEEEE-
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCC-EEEEEECccCCcchh----------hhhhc-
Confidence 12234567899999999999987655555555555443 577 899999999854110 11111
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
...+++++||++| .|++++++.|.+.+.
T Consensus 138 ----~~~~~~~~SA~~g-----------~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 138 ----NGHALIRLSARTG-----------EGVDVLRNHLKQSMG 165 (172)
T ss_dssp ----TTEEEEECCTTTC-----------TTHHHHHHHHHHHC-
T ss_pred ----cCCceEEEeCCCC-----------CCHHHHHHHHHHHhh
Confidence 1368999999987 389999999987654
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-15 Score=151.74 Aligned_cols=163 Identities=20% Similarity=0.131 Sum_probs=100.4
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++..... ......+.... ....+......+.+|||||+++|.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~--------------~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT--------------DYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYN 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------CB-CCCC-------CEEECCCC-CTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhh
Confidence 456788999999999999999999743110 00011111110 011122223456799999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHH-------HHHHHHHHhh
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLD-------LVEMEIRELL 797 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~-------~~~~~~~~~l 797 (1021)
..+..+++.+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+...... ...++..++.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 8888888999999999999874433332 244444443 677 999999999875322100 0123344454
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.+++ .+++++||++| .|++++++.|.+.+
T Consensus 150 ~~~~~----~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 150 KLIGA----PAYIECSSKSQ-----------ENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHTC----SEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HHcCC----CEEEEEECCCC-----------CCHHHHHHHHHHHH
Confidence 44442 37899999987 38999999887644
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-15 Score=160.01 Aligned_cols=160 Identities=14% Similarity=0.016 Sum_probs=111.7
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~ 726 (1021)
...+.+.+.++|.+++|||||+++|+... +........|.|.......+...+..+.||||||+++
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGE--------------FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHH--------------HTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCC--------------CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 34566789999999999999999977532 1112234456777666666655567889999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
|...+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+.... .+...+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~-- 148 (221)
T 3gj0_A 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKVK-----AKSIVFHRKKN-- 148 (221)
T ss_dssp TSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSCSSC-----GGGCCHHHHHT--
T ss_pred HhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCcccccccc-----HHHHHHHHHcC--
Confidence 98888889999999999999998544333 3333333332 677 9999999999752211 11222222333
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 149 ---~~~~~~Sa~~~~-----------gi~~l~~~l~~~l 173 (221)
T 3gj0_A 149 ---LQYYDISAKSNY-----------NFEKPFLWLARKL 173 (221)
T ss_dssp ---CEEEECBGGGTB-----------TTTHHHHHHHHHH
T ss_pred ---CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 579999999874 7777777776544
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=150.82 Aligned_cols=118 Identities=14% Similarity=0.022 Sum_probs=77.8
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+...- .. ++ ..|+.... ...+..++..+.+.+|||
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~-----------~~-------~~t~~~~~-~~~~~~~~~~~~~~i~Dt 75 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGY--PT-----------EY-------IPTAFDNF-SAVVSVDGRPVRLQLCDT 75 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------------------------CCSSEEE-EEEEEETTEEEEEEEEEC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCC--CC-----------CC-------CCccccee-EEEEEECCEEEEEEEEEC
Confidence 34567899999999999999999973221 00 00 01111111 112222333578889999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhh--cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
||+.+|...+..+++.+|++|+|+|+++........ .| ..+.. .++|+++|+||+|+..
T Consensus 76 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 76 AGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp CCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred CCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 999999888888999999999999998764433332 23 33332 3899999999999864
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=148.77 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=80.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|..|+|||||+++|....-... + ..|+.... ...+..++..+.+.||||
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-------------~-------~~t~~~~~-~~~~~~~~~~~~l~i~Dt 83 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-------------Y-------VPTVFENY-TASFEIDTQRIELSLWDT 83 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-------------C-------CCCSEEEE-EEEEESSSSEEEEEEEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-------------c-------CCccceeE-EEEEEECCEEEEEEEEeC
Confidence 45567899999999999999999975321100 0 01111111 112222344688999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHhh--cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
||+.+|......+++.+|++|+|+|+++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 84 ~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 84 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 99999988888889999999999999875433332 334 33332 4789999999999853
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.6e-15 Score=149.23 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=104.7
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHA 725 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~ 725 (1021)
..+.+.+.++|.+++|||||+++|++..... ......+... ...+..++. .+.+|||||++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVD--------------DYDPTIEDSY---LKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCS--------------CCCTTCCEEE---EEEEEETTEEEEEEEEECCSCG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCCcccee---EEEEEeCCcEEEEEEEECCCch
Confidence 4566788999999999999999999642110 0111112222 233344444 45679999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
+|...+..+++.+|++++|+|+++....+ ..+++..+.. .++| +++|+||+|+.+..... .++...+.+.+
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~v~---~~~~~~~~~~~ 153 (183)
T 3kkq_A 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRKVT---RDQGKEMATKY 153 (183)
T ss_dssp GGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCCSC---HHHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhccCcC---HHHHHHHHHHh
Confidence 99888889999999999999998753322 2333333322 4677 89999999987522111 12334444444
Q ss_pred ccCCCceEEEEeccc-ccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 801 DFDGENTKIVIGSAL-LALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~-~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+ ++++++||+ ++ .|++++++.|.+.
T Consensus 154 ~-----~~~~~~Sa~~~~-----------~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 154 N-----IPYIETSAKDPP-----------LNVDKTFHDLVRV 179 (183)
T ss_dssp T-----CCEEEEBCSSSC-----------BSHHHHHHHHHHH
T ss_pred C-----CeEEEeccCCCC-----------CCHHHHHHHHHHH
Confidence 4 468999999 77 3888998888653
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.5e-15 Score=151.43 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=103.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.... .+....++.+.....+..++ ..+.||||||+++|
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 87 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFK----------------QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF 87 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEETTEEEEEEEECCTTHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC----------------ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhH
Confidence 3577899999999999999999974311 11112223333334444444 57899999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
...+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+..... ..+...+.+..+
T Consensus 88 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~-- 161 (200)
T 2o52_A 88 RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLDPEREVT---FLEASRFAQENE-- 161 (200)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT--
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccccC---HHHHHHHHHHcC--
Confidence 8888888999999999999987543222 3344434332 566 99999999986522110 122333444443
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.|.+.+
T Consensus 162 ---~~~~~~SA~~g~-----------gi~~l~~~l~~~i 186 (200)
T 2o52_A 162 ---LMFLETSALTGE-----------NVEEAFLKCARTI 186 (200)
T ss_dssp ---CEEEEECTTTCT-----------THHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 579999999873 7888888776543
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.8e-15 Score=147.33 Aligned_cols=154 Identities=15% Similarity=0.064 Sum_probs=103.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|.+++|||||+++|++.... .+...+++.+.....+..++ ..+.+|||||+++|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 67 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFN----------------PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 67 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCC----------------C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC----------------CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh
Confidence 56788999999999999999974311 11122233333334444444 4688999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++++|+|+++.... ....++..+... ++| +++|+||+|+.+..... ++...+.+..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~---- 138 (170)
T 1g16_A 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTA----DQGEALAKELG---- 138 (170)
T ss_dssp CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCCSCH----HHHHHHHHHHT----
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCccCH----HHHHHHHHHcC----
Confidence 888899999999999999875432 223444444443 566 99999999985422111 22333444444
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.|.+.+
T Consensus 139 -~~~~~~Sa~~~~-----------gv~~l~~~l~~~~ 163 (170)
T 1g16_A 139 -IPFIESSAKNDD-----------NVNEIFFTLAKLI 163 (170)
T ss_dssp -CCEEECBTTTTB-----------SHHHHHHHHHHHH
T ss_pred -CeEEEEECCCCC-----------CHHHHHHHHHHHH
Confidence 468999999873 8888888887644
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-15 Score=171.93 Aligned_cols=112 Identities=17% Similarity=0.248 Sum_probs=76.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-+|+|+|++|+|||||+|+|+.....+.. ...|+|.+.....+.+. ++.++||||||+.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-----------------~~~gtT~d~~~~~i~~~----g~~v~liDT~G~~ 283 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVT-----------------DLPGTTRDVVESQLVVG----GIPVQVLDTAGIR 283 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCS-----------------CCTTCCHHHHHHEEEET----TEEEEECC-----
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCccccc-----------------CCCCeeEEEEEEEEEEC----CEEEEEEECCccc
Confidence 36999999999999999999876543322 01233444433445566 7889999999998
Q ss_pred CcHHHHHH--------HhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVER--------SLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~--------~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
++...+.. +++.+|++|+|+|++++...+...+++.+.. .|+++|+||+|+..
T Consensus 284 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~ 344 (462)
T 3geh_A 284 ETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVE 344 (462)
T ss_dssp ---------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSC
T ss_pred cchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCc
Confidence 77654433 5788999999999999988888888777653 79999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-15 Score=151.61 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=110.8
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
.++...++++|.+++|||||+++|++.... .+...|+|.+.....+..++..+.+|||||+++|
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVY----------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEE----------------EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcc----------------ccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 456678999999999999999999974311 1223466777777777778899999999999887
Q ss_pred H------HHHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 728 I------KNMITGAA--QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 728 ~------~~~~~~~~--~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
. ..+..++. .+|++++|+|++. ..+...++..+...+.| +++|+||+|+....... .+...+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~ 140 (188)
T 2wjg_A 68 TANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGIE----IDVDKLEKI 140 (188)
T ss_dssp SSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCC-EEEEEECHHHHHHTTCC----CCHHHHHHH
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCC-EEEEEEhhhccccccch----HHHHHHHHH
Confidence 3 22334443 4999999999875 34445566666667888 89999999986421110 122333333
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++ ++++++||+++ .+++++++.|.+.+.
T Consensus 141 ~~-----~~~~~~Sa~~~-----------~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 141 LG-----VKVVPLSAAKK-----------MGIEELKKAISIAVK 168 (188)
T ss_dssp HT-----SCEEECBGGGT-----------BSHHHHHHHHHHHHT
T ss_pred hC-----CCeEEEEecCC-----------CCHHHHHHHHHHHHH
Confidence 33 46899999987 388899998877554
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=147.81 Aligned_cols=158 Identities=20% Similarity=0.139 Sum_probs=104.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
-+.+.+.++|.+++|||||+++|++..... ...+.| .....+..++..+.+|||||+++|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---------------~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVT---------------TKPTIG----FNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE---------------ECSSTT----CCEEEEEETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCc---------------cCCcCc----cceEEEEECCEEEEEEECCCCHhHH
Confidence 346788999999999999999999743210 011112 2233455567899999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..++..+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+ ++.+.+......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~i~~~~~~~~~~ 150 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGALS-AS----EVSKELNLVELK 150 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTCCC-HH----HHHHHTTTTTCC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCCCC-HH----HHHHHhCccccc
Confidence 888888899999999999987643 333444444432 3566 999999999975311 12 233333222222
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
...++++++||++| .|+++++++|.+.+
T Consensus 151 ~~~~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 151 DRSWSIVASSAIKG-----------EGITEGLDWLIDVI 178 (183)
T ss_dssp SSCEEEEEEBGGGT-----------BTHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCC-----------cCHHHHHHHHHHHH
Confidence 33468999999988 38899999887643
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=142.96 Aligned_cols=154 Identities=22% Similarity=0.198 Sum_probs=87.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||+++|++.... ......|.|.. ....+......+.+|||||+++|...+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~ 66 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDG---------------PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLP 66 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC---------
T ss_pred EEEEEECCCCCCHHHHHHHHcCcccc---------------CCCCccccceE-EEEEECCEEEEEEEEECCCCccchhhh
Confidence 56788999999999999999864311 11223344442 222333334567899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
..+++.+|++++|+|+++... .....++..+... ++| +++|+||+|+.+...... .+...+....+
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~----- 137 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSREVSV---DEGRACAVVFD----- 137 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCCSCH---HHHHHHHHHTT-----
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccccCH---HHHHHHHHHhC-----
Confidence 888999999999999987433 2233344444443 677 899999999975322111 12233333333
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++| .|+++++++|.+.
T Consensus 138 ~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 161 (166)
T 3q72_A 138 CKFIETSAALH-----------HNVQALFEGVVRQ 161 (166)
T ss_dssp CEEEECBGGGT-----------BSHHHHHHHHHHH
T ss_pred CcEEEeccCCC-----------CCHHHHHHHHHHH
Confidence 58999999988 3889999888653
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-15 Score=154.89 Aligned_cols=159 Identities=19% Similarity=0.070 Sum_probs=103.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhhhH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHADYI 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~~~ 728 (1021)
+.+.+.++|.+++|||||+++|++.... .......|.+............ ..+.||||||+++|.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFE--------------KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA 75 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTT--------------CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc
Confidence 4577889999999999999999974311 1111222333322222111112 568999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..++..+|++|+|+|++++...+.. +++..+... ++| +++|+||+|+.+.... ...+...+.+..+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 148 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKIDIKNRQKI---SKKLVMEVLKGKN--- 148 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC----C---CHHHHHHHTTTCC---
T ss_pred hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc---CHHHHHHHHHHcC---
Confidence 8888889999999999999986543332 333433333 577 9999999999753211 1233444444443
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 149 --~~~~~~Sa~~g~-----------gv~~l~~~l~~~~ 173 (218)
T 4djt_A 149 --YEYFEISAKTAH-----------NFGLPFLHLARIF 173 (218)
T ss_dssp --CEEEEEBTTTTB-----------TTTHHHHHHHHHH
T ss_pred --CcEEEEecCCCC-----------CHHHHHHHHHHHH
Confidence 579999999874 6777777766543
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=144.70 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=80.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+...+|+++|+.|+|||||+++|+...-... + ..|+.... ...+..++..+.+.+||||
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-------------~-------~~t~~~~~-~~~~~~~~~~~~~~i~Dt~ 63 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-------------Y-------VPTVFENY-TASFEIDTQRIELSLWDTS 63 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-------------C-------CCCSEEEE-EEEEECSSCEEEEEEEEEC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCC-------------C-------CCccceeE-EEEEEECCEEEEEEEEECC
Confidence 4567899999999999999999975321100 0 00111111 1122223446789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHhh--cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 64 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 9999988888889999999999999875433332 334 33332 4799999999999853
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-14 Score=145.38 Aligned_cols=158 Identities=17% Similarity=0.111 Sum_probs=104.9
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHA 725 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~ 725 (1021)
.++.+.+.++|.+++|||||+++|++..... ......+. .....+..++ ..+.||||||++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~---~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE--------------DYEPTKAD---SYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------SCCTTCCE---EEEEEEEETTEEEEEEEEECCCTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCC--------------cCCCccce---EEEEEEEECCEEEEEEEEECCCCc
Confidence 3456788999999999999999999743110 00011111 1122333444 468899999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
+|...+..+++.+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+.+.... ...++.++++..
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~ 153 (187)
T 2a9k_A 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRAEQW 153 (187)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGGCCS---CHHHHHHHHHHT
T ss_pred ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCcc---CHHHHHHHHHHc
Confidence 99999999999999999999998743322 2233333333 2677 9999999998753211 112344444444
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+ ++++++||+++ .++++++++|.+.+
T Consensus 154 ~-----~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 154 N-----VNYVETSAKTR-----------ANVDKVFFDLMREI 179 (187)
T ss_dssp T-----CEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred C-----CeEEEeCCCCC-----------CCHHHHHHHHHHHH
Confidence 4 47999999987 38888888887643
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=140.74 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=75.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+.-+|+++|..|+|||||+++|+...-... +.+ |.......+.+ ++..+.+.+||||
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-------------~~~-------t~~~~~~~~~~--~~~~~~l~i~Dt~ 75 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQE-------------ESP-------EGGRFKKEIVV--DGQSYLLLIRDEG 75 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-------------CCT-------TCEEEEEEEEE--TTEEEEEEEEECS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-------------cCC-------CcceEEEEEEE--CCEEEEEEEEECC
Confidence 3456899999999999999999974321100 000 11111112222 2335788999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh----cCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~----~~~p~iiviNK~D~~ 142 (1021)
|+.+|. +++.+|++++|+|+++....+....| ..+.. .++|+++++||+|+.
T Consensus 76 G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 76 GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp SSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred CChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999986 78889999999999986554443334 44433 478999999999984
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-15 Score=147.96 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=103.6
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
.+.+.+.++|.+++|||||+++|++.... .......+... ...+..++ ..+.||||||+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~---~~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFV--------------SDYDPTIEDSY---TKICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCC--------------SSCCTTCCEEE---EEEEEETTEEEEEEEEECCCTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCc--------------cccCCCcCceE---EEEEEECCEEEEEEEEECCCchh
Confidence 34578899999999999999999974211 01111122222 13344444 4678999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHH-HH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMP-QTREHILLA-RQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~-~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
|...+..++..+|++++|+|+++.... ....++..+ .. .++| +++|+||+|+.+...... .+...+....+
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~ 145 (181)
T 2fn4_A 70 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQRQVPR---SEASAFGASHH 145 (181)
T ss_dssp TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGGCCSCH---HHHHHHHHHTT
T ss_pred hHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccCH---HHHHHHHHHcC
Confidence 988888889999999999999874322 222333333 22 3677 999999999975322111 22233333333
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++++++|.+.+
T Consensus 146 -----~~~~~~Sa~~~-----------~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 146 -----VAYFEASAKLR-----------LNVDEAFEQLVRAV 170 (181)
T ss_dssp -----CEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred -----CeEEEecCCCC-----------CCHHHHHHHHHHHH
Confidence 57999999987 38888888887644
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-15 Score=150.54 Aligned_cols=159 Identities=18% Similarity=0.071 Sum_probs=106.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++..... ......+... ...+..++ ..+.+|||||+++|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~~~i~D~~G~~~~ 79 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPE--------------EYVPTVFDHY---AVSVTVGGKQYLLGLYDTAGQEDY 79 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCC--------------SCCCSSCCCE---EEEEESSSCEEEEEEECCCCSSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccccee---EEEEEECCEEEEEEEEECCCCcch
Confidence 45788999999999999999999742110 0001111111 22333444 57889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-H-HHHHHHHHc--CCCeEEEEEeeccccchhhHHHH---------HHHHHH
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-R-EHILLARQV--GVPNIVVFLNKADCVQDKELLDL---------VEMEIR 794 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~-e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~---------~~~~~~ 794 (1021)
...+..+++.+|++++|+|+++....+. . .++..+... ++| +++|+||+|+.+.....+. ..++..
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 158 (194)
T 2atx_A 80 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 158 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence 8888888899999999999987543322 2 344555554 777 9999999999763211110 113344
Q ss_pred HhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 795 ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 795 ~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++.+.+++ .+++++||++| .|+++++++|.+.
T Consensus 159 ~~~~~~~~----~~~~~~Sa~~g-----------~gi~~l~~~l~~~ 190 (194)
T 2atx_A 159 KLAKEIGA----CCYVECSALTQ-----------KGLKTVFDEAIIA 190 (194)
T ss_dssp HHHHHHTC----SCEEECCTTTC-----------TTHHHHHHHHHHH
T ss_pred HHHHHcCC----cEEEEeeCCCC-----------CCHHHHHHHHHHH
Confidence 45544443 36899999987 3889999888754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=145.20 Aligned_cols=157 Identities=19% Similarity=0.167 Sum_probs=96.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh--H
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY--I 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~--~ 728 (1021)
.+.+.++|.+++|||||+++|++..... .....|.+.......+......+.+|||||++++ .
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 68 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERD---------------LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKS 68 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC--------------------CCCSSSSEEEEEEEETTEEEEEEEECCC-------C
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCcc---------------ccCccccceeEEEEEECCEEEEEEEEecCCCCccchh
Confidence 4678899999999999999999743211 1112355544444333322346789999999884 3
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
.....+++.+|++++|+|+++.... ...+++..+... ++| +++|+||+|+.+...... ++...+....+
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~~~~v~~---~~~~~~~~~~~-- 142 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLARCREVSV---EEGRACAVVFD-- 142 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTTTCCSCH---HHHHHHHHHHT--
T ss_pred hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhccccccCH---HHHHHHHHHcC--
Confidence 3444556789999999999874332 223444444443 677 999999999975321111 12233333333
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++++++|.+.+
T Consensus 143 ---~~~~~~Sa~~g-----------~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 143 ---CKFIETSATLQ-----------HNVAELFEGVVRQL 167 (175)
T ss_dssp ---SEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred ---CeEEEEecCCC-----------CCHHHHHHHHHHHH
Confidence 47999999987 38889998887644
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.53 E-value=9.5e-15 Score=151.69 Aligned_cols=119 Identities=12% Similarity=0.093 Sum_probs=60.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccC--ceeEEEEcC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKF--KYMINIIDT 84 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~--~~~i~liDt 84 (1021)
+..+|+++|+.|+|||||+++|+........ + ....+.++.....+.+. +. .+.+.+|||
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----------~-----~~~t~~~~~~~~~~~~~--~~~~~~~~~l~Dt 80 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLK-----------D-----YAMTSGVEVVVAPVTIP--DTTVSVELFLLDT 80 (208)
T ss_dssp EEEEEEEC--------------------------------------------------CEEEECT--TSSEEEEEEEEET
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccC-----------C-----CCCccceEEEEEEEEEC--CcccEEEEEEEEC
Confidence 4468999999999999999999743111110 0 00011111222223333 33 578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh------cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK------YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~------~~~p~iiviNK~D~~~ 143 (1021)
||+.+|...+..+++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+..
T Consensus 81 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 81 AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp TTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred CCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 99999999999999999999999999886543333333 33332 5889999999999853
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-15 Score=150.16 Aligned_cols=156 Identities=18% Similarity=0.133 Sum_probs=102.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.... .......+.+. ...+..++ ..+.||||||+++|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV--------------DSYDPTIENTF---TKLITVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--------------SCCCTTCCEEE---EEEEEETTEEEEEEEEECCCCCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--------------CCCCCCccccE---EEEEEECCEEEEEEEEeCCCchhh
Confidence 4567889999999999999999964311 11112223333 22334444 56789999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHH----HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLAR----QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~----~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
...+..+++.+|++++|+|+++....+. ..++..+. ..++| +++|+||+|+.+..... .++...+.+.++
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 142 (181)
T 3t5g_A 68 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVIS---YEEGKALAESWN- 142 (181)
T ss_dssp CCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT-
T ss_pred hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcceec---HHHHHHHHHHhC-
Confidence 7777778889999999999987433222 22222222 23677 99999999986522111 123444555454
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||+++ .|++++++.|.+.+
T Consensus 143 ----~~~~~~Sa~~~-----------~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 143 ----AAFLESSAKEN-----------QTAVDVFRRIILEA 167 (181)
T ss_dssp ----CEEEECCTTSH-----------HHHHHHHHHHHHHH
T ss_pred ----CcEEEEecCCC-----------CCHHHHHHHHHHHH
Confidence 47999999987 48888888887654
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-14 Score=147.89 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=94.2
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHAD 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~ 726 (1021)
+.+.+.++|.+++|||||+++|++.... .+....++.+.....+..+ ...+.+|||||+++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 70 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS----------------QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC----------------TTC---CCCSCEEEEECCSSSCCEEEEEECCC----
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC----------------cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH
Confidence 3467889999999999999999974311 1111122223333334433 35789999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
|...+..+++.+|++|+|+|+++....+. ..++..+.. .++| +++|+||+|+.+..... ...+...+.+
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~v--~~~~~~~~~~ 147 (182)
T 1ky3_A 71 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDAEESKKIV--SEKSAQELAK 147 (182)
T ss_dssp ------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTSCGGGCCS--CHHHHHHHHH
T ss_pred hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCccccccccC--CHHHHHHHHH
Confidence 99888888899999999999987543222 333333322 4667 99999999996422110 0122333333
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
... ..+++++||++| .|+++++++|.+.
T Consensus 148 ~~~----~~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 148 SLG----DIPLFLTSAKNA-----------INVDTAFEEIARS 175 (182)
T ss_dssp HTT----SCCEEEEBTTTT-----------BSHHHHHHHHHHH
T ss_pred hcC----CCeEEEEecCCC-----------CCHHHHHHHHHHH
Confidence 221 357899999987 3888898888653
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-14 Score=144.02 Aligned_cols=119 Identities=14% Similarity=0.068 Sum_probs=77.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|..|+|||||+++|......... ..+++.......+.+ ++..+.+.+|||
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~l~i~Dt 79 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH------------------EPENPEDTYERRIMV--DKEEVTLVVYDI 79 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGG------------------TTTSCTTEEEEEEEE--TTEEEEEEEECC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccC------------------CCCcccceEEEEEEE--CCEEEEEEEEec
Confidence 345679999999999999999998422221110 111222211122223 334678899999
Q ss_pred CCCCCcHH-HHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh----cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTI-EVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~-~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~----~~~p~iiviNK~D~~~ 143 (1021)
||+.+|.. ....+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 80 WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred CCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 99998865 566678899999999999874332222 22233332 4799999999999863
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=146.27 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=104.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
..+.+.++|.+++|||||+++|++..... ......+.+.. ....+......+.||||||+++|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~ 71 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD--------------TYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPA 71 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC--------------TTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC--------------cccCcccccee-EEEEECCEEEEEEEEeCCChHHhHH
Confidence 34678999999999999999999743110 00111122211 1122222335788999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH-----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ-----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~-----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
.+..++..+|++++|+|+++.... ....++..+.. .++| +++|+||+|+.+..... .+...+...++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~-- 144 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQREVDT----REAQAVAQEWK-- 144 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCSSCH----HHHHHHHHHHT--
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccccCH----HHHHHHHHHhC--
Confidence 999999999999999999874322 22233333333 2567 99999999997522111 22233333343
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .|+++++++|.+.+.
T Consensus 145 ---~~~~~~Sa~~~-----------~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 145 ---CAFMETSAKMN-----------YNVKELFQELLTLET 170 (199)
T ss_dssp ---CEEEECBTTTT-----------BSHHHHHHHHHHHCS
T ss_pred ---CeEEEEecCCC-----------CCHHHHHHHHHHHHh
Confidence 47899999987 388999999887654
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=150.96 Aligned_cols=155 Identities=15% Similarity=0.062 Sum_probs=105.2
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++.... .+...+++.+.....+..++ ..+.||||||+++|.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFN----------------PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR 83 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCC----------------CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC----------------cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 467889999999999999999974311 11122333444444555555 578999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..++..+|++|+|+|+++.... ....++..+... ++| +++|+||+|+....... .+...+.+.++
T Consensus 84 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~--- 155 (213)
T 3cph_A 84 TITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTA----DQGEALAKELG--- 155 (213)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCCSCH----HHHHHHHHHHT---
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccCH----HHHHHHHHHcC---
Confidence 8888899999999999999874332 223444444443 566 99999999995322111 22333444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||+++. ++++++++|.+.+
T Consensus 156 --~~~~~~Sa~~~~-----------gi~~l~~~l~~~~ 180 (213)
T 3cph_A 156 --IPFIESSAKNDD-----------NVNEIFFTLAKLI 180 (213)
T ss_dssp --CCEEECBTTTTB-----------SSHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 368999999873 6777777765533
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=144.16 Aligned_cols=154 Identities=19% Similarity=0.132 Sum_probs=93.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|.+++|||||+++|++...... ... ..+.+.....+..++ ..+.+|||||+++|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~--------------~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 66 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHA--------------HEM--ENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG 66 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEETTEEEEEEEECCCCC-----
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCccc--------------ccC--CCcCCeeeEEEEECCeEEEEEEEECCCccccch
Confidence 3567889999999999999986431111 111 112333333344444 5677999999999876
Q ss_pred -HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 730 -NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 730 -~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
....+++.+|++++|+|+++... ....+++..+... ++| +++|+||+|+.+..... .++...+.+..+
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 140 (169)
T 3q85_A 67 WLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREVS---LEEGRHLAGTLS-- 140 (169)
T ss_dssp ---CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT--
T ss_pred hhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcccCC---HHHHHHHHHHcC--
Confidence 44555788999999999987432 2233444444433 677 99999999987522211 123344444444
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++| .|++++++.|.+.
T Consensus 141 ---~~~~~~Sa~~~-----------~~v~~l~~~l~~~ 164 (169)
T 3q85_A 141 ---CKHIETSAALH-----------HNTRELFEGAVRQ 164 (169)
T ss_dssp ---CEEEECBTTTT-----------BSHHHHHHHHHHH
T ss_pred ---CcEEEecCccC-----------CCHHHHHHHHHHH
Confidence 47899999987 3888999888654
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-14 Score=149.20 Aligned_cols=158 Identities=16% Similarity=0.107 Sum_probs=105.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
..+.+.++|.+++|||||+++|++...... .....+.+.. ..+..++ ..+.||||||+++|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~ 86 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV--------------YVPTVFENYI---ADIEVDGKQVELALWDTAGQEDY 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS--------------CCCSSCCCCE---EEEEETTEEEEEEEECCCCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc--------------cCCcccceEE---EEEEECCEEEEEEEEECCCchhH
Confidence 456789999999999999999997432110 0011111111 1233344 47889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHH
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIR 794 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~ 794 (1021)
...+..+++.+|++++|+|+++....+. ..++..+... ++| +++|+||+|+.+.....+.+ .++..
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGR 165 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCccchhhhcccccCcCCHHHHH
Confidence 8888888899999999999987433222 2344455554 778 99999999998643222111 12334
Q ss_pred HhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 795 ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 795 ~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+.+.+++ .+++++||++| .|++++++.|.+
T Consensus 166 ~~~~~~~~----~~~~~~SA~~g-----------~gi~~l~~~i~~ 196 (201)
T 2gco_A 166 DMANRISA----FGYLECSAKTK-----------EGVREVFEMATR 196 (201)
T ss_dssp HHHHHTTC----SEEEECCTTTC-----------TTHHHHHHHHHH
T ss_pred HHHHhCCC----cEEEEeeCCCC-----------CCHHHHHHHHHH
Confidence 44444443 37899999987 388999988865
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-14 Score=147.53 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=80.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+++|..|+|||||+++|+...-... +. .|+.... ......++..+.+.+|||||
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~-------------~~-------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G 84 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPET-------------YV-------PTVFENY-TACLETEEQRVELSLWDTSG 84 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSS-------------CC-------CCSEEEE-EEEEEC--CEEEEEEEEECC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC-------------cC-------CeeeeeE-EEEEEECCEEEEEEEEECCC
Confidence 456899999999999999999975321110 00 0111111 11122233468899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHH-HHHhh--cCCCEEEEEeCcCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVW-FQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~-~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
+.+|...+..+++.+|++|+|+|+++...... ...| ..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 85 SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred CHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99999888899999999999999998654443 3334 33333 3799999999999863
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-14 Score=147.40 Aligned_cols=117 Identities=15% Similarity=0.045 Sum_probs=64.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|+.|+|||||+++|+...-. . ++ ..|+.... ...+..++..+.+.+|||||
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~--~-----------~~-------~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G 91 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP--E-----------SY-------TPTVFERY-MVNLQVKGKPVHLHIWDTAG 91 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------------------------CCCCCEEE-EEEEEETTEEEEEEEEEC--
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--C-----------CC-------CCccceeE-EEEEEECCEEEEEEEEECCC
Confidence 4578999999999999999999732110 0 00 00111111 11122233467899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhh--cCCCEEEEEeCcCCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQK--YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~--~~~p~iiviNK~D~~~~ 144 (1021)
+.+|...+..+++.+|++|+|+|+++....+... .| ..+.. .++|+++|+||+|+...
T Consensus 92 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 92 QDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp -------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred chhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 9999999999999999999999998754333322 23 23322 37999999999998643
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-15 Score=153.33 Aligned_cols=159 Identities=19% Similarity=0.158 Sum_probs=103.8
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++...... .....+.+. .....+......+.||||||+++|.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~ 86 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEG--------------YDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYS 86 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSC--------------CCCCSEEEE-EEEEC----CEEEEEEEECCCCTTC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCC--------------CCCccceEE-EEEEEECCEEEEEEEEECCCccchH
Confidence 4567889999999999999999997432110 011112222 2222333445778999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+.+...... .+...+.+..+
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~-- 160 (201)
T 3oes_A 87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPEREVQA---VEGKKLAESWG-- 160 (201)
T ss_dssp CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT--
T ss_pred HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccccccCH---HHHHHHHHHhC--
Confidence 888888899999999999987443222 233333322 2677 999999999875322111 22333444444
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|++++++.|.+.+
T Consensus 161 ---~~~~~~Sa~~~-----------~~v~~l~~~l~~~i 185 (201)
T 3oes_A 161 ---ATFMESSAREN-----------QLTQGIFTKVIQEI 185 (201)
T ss_dssp ---CEEEECCTTCH-----------HHHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 47999999988 38888888887654
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-14 Score=147.06 Aligned_cols=159 Identities=18% Similarity=0.119 Sum_probs=106.2
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCCh
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGH 724 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~ 724 (1021)
...+.+.+.++|.+++|||||+++|++..... ......+.+ ....+..++ ..+.||||||+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~---~~~~~~~~~~~~~~~l~Dt~G~ 72 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVE--------------DYEPTKADS---YRKKVVLDGEEVQIDILDTAGQ 72 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCTTCCEE---EEEEEEETTEEEEEEEEECCCT
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCccceE---EEEEEEECCEEEEEEEEcCCCh
Confidence 34556788999999999999999999743110 011111221 123344444 47889999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
++|...+..++..+|++++|+|+++.... ....++..+... ++| +++|+||+|+.+.... ..+++..+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~ 148 (206)
T 2bov_A 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRAEQ 148 (206)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccccccc---cHHHHHHHHHH
Confidence 99999999999999999999999874332 223333333332 677 9999999999753211 11233444444
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+ ++++++||++|. |+++++++|.+.+
T Consensus 149 ~~-----~~~~~~Sa~~g~-----------gi~~l~~~l~~~i 175 (206)
T 2bov_A 149 WN-----VNYVETSAKTRA-----------NVDKVFFDLMREI 175 (206)
T ss_dssp HT-----CEEEEECTTTCT-----------THHHHHHHHHHHH
T ss_pred hC-----CeEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 44 479999999873 7888888876544
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=152.82 Aligned_cols=148 Identities=20% Similarity=0.179 Sum_probs=104.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCChhhh---
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGHADY--- 727 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~~~~--- 727 (1021)
+.+.++|.+++|||||+++|++... .......|.|++.....+.. ++..+.+|||||+++|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~---------------~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 68 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYS---------------AFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMEN 68 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCC---------------TGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---------------CccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhh
Confidence 4567899999999999999987421 11223446677766666654 5678999999999999
Q ss_pred --HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHH-HHHHHc-----CCCeEEEEEeeccccchhhHH---HHHHHHHHHh
Q psy5021 728 --IKNMITGAAQMDGAILVCSAVDGPMPQTREHI-LLARQV-----GVPNIVVFLNKADCVQDKELL---DLVEMEIREL 796 (1021)
Q Consensus 728 --~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l-~~~~~~-----~ip~iIvviNK~Dl~~~~~~~---~~~~~~~~~~ 796 (1021)
...+..+++.+|++|+|+|+++....+..+.| ..+..+ ++| +++|+||+|+.+.+.+. .....++.++
T Consensus 69 ~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~~~ 147 (307)
T 3r7w_A 69 YFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLSET 147 (307)
T ss_dssp HHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHHHH
Confidence 44556667899999999999987654444332 222222 677 99999999998632221 2444667777
Q ss_pred hhccccCCCceEEEEeccccc
Q psy5021 797 LTEYDFDGENTKIVIGSALLA 817 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~ 817 (1021)
.+.+|+. +++++++||++.
T Consensus 148 ~~~~g~~--~~~~~~tSa~~~ 166 (307)
T 3r7w_A 148 SSEFGFP--NLIGFPTSIWDE 166 (307)
T ss_dssp HHTTTCC--SCEEEECCTTSS
T ss_pred HHHcCCC--CeEEEEeeecCC
Confidence 7777652 368999999963
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-14 Score=151.47 Aligned_cols=157 Identities=15% Similarity=0.040 Sum_probs=104.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++..... ....+++.+.....+..++ ..+.||||||+++|
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 70 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN----------------QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS----------------SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 34678899999999999999999743110 1112233344444444443 57899999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
...+..+++.+|++|+|+|++++...+. ..++..+.. .++| +++|+||+|+.+..... ++...+.+.
T Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~ 145 (207)
T 1vg8_A 71 QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLENRQVAT----KRAQAWCYS 145 (207)
T ss_dssp SCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSSCCCSCH----HHHHHHHHH
T ss_pred HHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCcccccCH----HHHHHHHHh
Confidence 8888888899999999999987543222 223332222 3667 89999999997422111 222333321
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
. ..++++++||++|. |+++++++|.+.+
T Consensus 146 ~----~~~~~~~~Sa~~g~-----------gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 146 K----NNIPYFETSAKEAI-----------NVEQAFQTIARNA 173 (207)
T ss_dssp T----TSCCEEECBTTTTB-----------SHHHHHHHHHHHH
T ss_pred c----CCceEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 1 13578999999873 7888888876544
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-15 Score=153.18 Aligned_cols=161 Identities=17% Similarity=0.096 Sum_probs=105.1
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
.+.+.+.++|.+++|||||+++|++..... ......|... ...+..++ ..+.||||||+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT--------------DYIPTVFDNF---SANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCSSCCCE---EEEEECSSCEEEEEEECCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCc--------------cCCCccceeE---EEEEEECCEEEEEEEEECCCcHH
Confidence 345788999999999999999999743110 0011112111 12233333 5788999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHH-H-HHHHHHHHc--CCCeEEEEEeeccccchhhHHHH-----HHHHHHHhh
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQT-R-EHILLARQV--GVPNIVVFLNKADCVQDKELLDL-----VEMEIRELL 797 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~-e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~-----~~~~~~~~l 797 (1021)
|...+..+++.+|++|+|+|+++....+. . .++..+... ++| +++|+||+|+.+....... ...+..++.
T Consensus 70 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~ 148 (212)
T 2j0v_A 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRDDKGYLADHTNVITSTQGEELR 148 (212)
T ss_dssp CCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCccccccccCCCCHHHHHHHH
Confidence 98888888999999999999987543322 2 344455444 778 9999999998753221000 123344455
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.++. .+++++||++| +|++++++.|.+.+
T Consensus 149 ~~~~~----~~~~~~Sa~~g-----------~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 149 KQIGA----AAYIECSSKTQ-----------QNVKAVFDTAIKVV 178 (212)
T ss_dssp HHHTC----SEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HHcCC----ceEEEccCCCC-----------CCHHHHHHHHHHHH
Confidence 55543 47899999987 38888888887654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-14 Score=141.95 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=74.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|..|+|||||+++|+...-.. ++. .|+.... ...+..++..+.+.+||||
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~-------------~~~-------~t~~~~~-~~~~~~~~~~~~l~i~Dt~ 77 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFIS-------------EYD-------PNLEDTY-SSEETVDHQPVHLRVMDTA 77 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS-------------CCC-------TTCCEEE-EEEEEETTEEEEEEEEECC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCc-------------ccC-------CCcccee-eEEEEECCEEEEEEEEECC
Confidence 345789999999999999999997533110 000 0111111 1112223346789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh------cCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK------YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~------~~~p~iiviNK~D~~ 142 (1021)
|+.+|.. +..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 78 G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 78 DLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp C---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred CCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 9998875 36788999999999999875433333323 33322 589999999999984
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-15 Score=151.91 Aligned_cols=160 Identities=14% Similarity=0.058 Sum_probs=106.5
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
.+.+.+.++|.+++|||||+++|++..... ......+.+. ...+..++ ..+.||||||+++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~ 83 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPT--------------AYVPTVFENF---SHVMKYKNEEFILHLWDTAGQEE 83 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE---EEEEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCC--------------ccCCeeeeee---EEEEEECCEEEEEEEEECCCcHH
Confidence 456788999999999999999999743110 0011112221 12233444 4568999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
|...+..+++.+|++++|+|+++...... ..++..+... ++| +++|+||+|+.+...+ ....++..++.+.+++
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSD-DVTKQEGDDLCQKLGC 161 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTT-CCCHHHHHHHHHHHTC
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCC-cccHHHHHHHHHhcCC
Confidence 98888888999999999999998543333 2333444443 566 9999999999752111 1112344455555554
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++++||++| .|++++++.|.+.+
T Consensus 162 ----~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 186 (194)
T 3reg_A 162 ----VAYIEASSVAK-----------IGLNEVFEKSVDCI 186 (194)
T ss_dssp ----SCEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred ----CEEEEeecCCC-----------CCHHHHHHHHHHHH
Confidence 13899999987 38889988887654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=147.24 Aligned_cols=157 Identities=15% Similarity=0.089 Sum_probs=106.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.... ....+.| .....+..++..+.+|||||+++|..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~---------------~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~ 81 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV---------------TTVPTVG----VNLETLQYKNISFEVWDLGGQTGVRP 81 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE---------------EECSSTT----CCEEEEEETTEEEEEEEECCSSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC---------------CcCCCCc----eEEEEEEECCEEEEEEECCCCHhHHH
Confidence 4578899999999999999999864311 0011122 22334556688999999999999887
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+++.. .+.......
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~~~~----~~~~~~~~~ 155 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLPDAAS-EAEIAE----QLGVSSIMN 155 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTCCC-HHHHHH----HTTGGGCCS
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCCCC-HHHHHH----HhChhhccC
Confidence 77778899999999999997643 333444443333 2566 999999999976321 122222 221111222
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++++++||+++ .|+++++++|.+.+
T Consensus 156 ~~~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 182 (189)
T 2x77_A 156 RTWTIVKSSSKTG-----------DGLVEGMDWLVERL 182 (189)
T ss_dssp SCEEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCc-----------cCHHHHHHHHHHHH
Confidence 3468999999987 38899999887654
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=144.58 Aligned_cols=154 Identities=15% Similarity=0.079 Sum_probs=99.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++...... ..+.+.+.....+..++. .+.||||||+++|.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 66 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDE-----------------YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 66 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCC-----------------CCTTCCEEEEEEEEETTEEEEEEEEECCCC---C
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------CCCCchheEEEEEEECCcEEEEEEEECCCcHHHH
Confidence 45678899999999999999997431100 011122222233344444 46789999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..++..+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+.+..... ++...+.+.++
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~----~~~~~~~~~~~-- 139 (189)
T 4dsu_A 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRTVDT----KQAQDLARSYG-- 139 (189)
T ss_dssp TTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCSSCH----HHHHHHHHHHT--
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccccCH----HHHHHHHHHcC--
Confidence 989999999999999999987433222 333333333 2677 99999999997522111 22333444444
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 140 ---~~~~~~Sa~~g~-----------gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 140 ---IPFIETSAKTRQ-----------GVDDAFYTLVREI 164 (189)
T ss_dssp ---CCEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 468999999873 7888888876543
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-14 Score=151.47 Aligned_cols=156 Identities=14% Similarity=0.074 Sum_probs=104.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++.... .+...+++.+.....+..++ ..+.||||||+++|.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT----------------NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR 71 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC----------------TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 467889999999999999999874311 11112233333333444444 478999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+..... ..+...+.+..+
T Consensus 72 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 144 (206)
T 2bcg_Y 72 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRVVE---YDVAKEFADANK--- 144 (206)
T ss_dssp CCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT---
T ss_pred HHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHcC---
Confidence 888888999999999999987543332 3334444443 456 89999999997522111 122333444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 145 --~~~~~~Sa~~g~-----------gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 145 --MPFLETSALDST-----------NVEDAFLTMARQI 169 (206)
T ss_dssp --CCEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 468999999873 7888877776543
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.2e-14 Score=146.09 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=91.5
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
.+.+.+.++|.+++|||||+++|++..... +.. ..+.+.....+..++ ..+.||||||+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~----------------~~~-~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 94 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPE----------------SYT-PTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-----------------------C-CCCCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCC-CccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 356788999999999999999999743110 000 111111122233344 4688999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHH
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEI 793 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~ 793 (1021)
|...+..++..+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+.....+.+ .++.
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 173 (214)
T 2j1l_A 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG 173 (214)
T ss_dssp ----------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH
T ss_pred hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhccchhhhhhcccccCcccHHHH
Confidence 998888889999999999999874432222 233444433 677 99999999997643221111 1233
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..+.+.+++ .+++++||++| .|++++++.|.+.+
T Consensus 174 ~~~~~~~~~----~~~~~~SA~~g-----------~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 174 QEMARSVGA----VAYLECSARLH-----------DNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHHTTC----SEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred HHHHHhcCC----CEEEEecCCCC-----------CCHHHHHHHHHHHH
Confidence 445544442 37999999987 38888988887643
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-14 Score=151.06 Aligned_cols=157 Identities=14% Similarity=0.066 Sum_probs=79.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC----CeEEEEEecCChh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE----NKHYAHVDCPGHA 725 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~----~~~i~liDtpG~~ 725 (1021)
+.+.+.++|.+++|||||+++|++...... .......| .+.....+..+ ...+.||||||++
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------~~~~~t~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL------------KDYAMTSG--VEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC------------------------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc------------CCCCCccc--eEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 457889999999999999999997521110 01111112 23333444454 3578999999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH------cCCCeEEEEEeeccccc-hhhHHHHHHHHHHHhh
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ------VGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELL 797 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~------~~ip~iIvviNK~Dl~~-~~~~~~~~~~~~~~~l 797 (1021)
+|...+..+++.+|++|+|+|++++.. .....++..+.. .++| +++|+||+|+.+ .... ..+++.+++
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~v---~~~~~~~~~ 160 (208)
T 2yc2_C 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRHQV---RLDMAQDWA 160 (208)
T ss_dssp HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC-------CC---CHHHHHHHH
T ss_pred HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhccC---CHHHHHHHH
Confidence 999988888999999999999987543 233444544444 3566 999999999875 2211 113344455
Q ss_pred hccccCCCceEEEEecccc-cccCCCCCccCcchHHHHHHhhhc
Q psy5021 798 TEYDFDGENTKIVIGSALL-ALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~-~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+.++ ++++++||++ +. ++++++++|.+
T Consensus 161 ~~~~-----~~~~~~Sa~~~~~-----------gi~~l~~~i~~ 188 (208)
T 2yc2_C 161 TTNT-----LDFFDVSANPPGK-----------DADAPFLSIAT 188 (208)
T ss_dssp HHTT-----CEEEECCC------------------CHHHHHHHH
T ss_pred HHcC-----CEEEEeccCCCCc-----------CHHHHHHHHHH
Confidence 5554 5799999998 73 67777777655
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=167.59 Aligned_cols=154 Identities=16% Similarity=0.089 Sum_probs=92.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH-
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN- 730 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~- 730 (1021)
+.++++|.+|+|||||+|+|++.... ......|+|.+.....+..++..+.||||||+.++...
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a---------------~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~v 298 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERA---------------IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEI 298 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC-----------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc---------------ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHH
Confidence 56889999999999999999985311 12334578888888888889999999999999876432
Q ss_pred -------HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 731 -------MITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV-GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 731 -------~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~-~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
+..++..+|++|+|+|++++...+ ..+...++..+ ++| +|+|+||+|+.+.... +. +++.+. +
T Consensus 299 e~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~p-iIvV~NK~Dl~~~~~~-~~--~~l~~~----~ 370 (476)
T 3gee_A 299 EHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAK-FLTVANKLDRAANADA-LI--RAIADG----T 370 (476)
T ss_dssp ---------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSE-EEEEEECTTSCTTTHH-HH--HHHHHH----H
T ss_pred HHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCC-EEEEEECcCCCCccch-hH--HHHHhc----C
Confidence 344568899999999999877652 22222333333 556 9999999999863321 11 222221 2
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+ .+++++||++| .|+++|+++|.+.+.
T Consensus 371 ~----~~~i~vSAktg-----------~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 371 G----TEVIGISALNG-----------DGIDTLKQHMGDLVK 397 (476)
T ss_dssp T----SCEEECBTTTT-----------BSHHHHHHHHTHHHH
T ss_pred C----CceEEEEECCC-----------CCHHHHHHHHHHHHh
Confidence 2 36899999988 489999999987654
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-14 Score=139.36 Aligned_cols=153 Identities=15% Similarity=0.088 Sum_probs=101.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++...... .....+ +.....+..++ ..+.+|||||+++|.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------~~~~~~---~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 65 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE--------------CDPTIE---DSYRKQVVIDGETCLLDILDTAGQEEYS 65 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSC--------------CCTTCC---EEEEEEEEETTEEEEEEEEECCCCSSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccc--------------cCCccc---eEEEEEEEECCEEEEEEEEECCCchhhh
Confidence 45678899999999999999987431100 000111 11122233333 457899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..++..+|++++|+|+++.... ...+++..+... ++| +++++||+|+.+..... ++..++.+..+
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~-- 138 (166)
T 2ce2_X 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAARTVES----RQAQDLARSYG-- 138 (166)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSCH----HHHHHHHHHHT--
T ss_pred HHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcccCH----HHHHHHHHHcC--
Confidence 8888899999999999999874332 223344444332 677 89999999987522111 23334444444
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||+++ .++++++++|.+.
T Consensus 139 ---~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 139 ---IPYIETSAKTR-----------QGVEDAFYTLVRE 162 (166)
T ss_dssp ---CCEEEECTTTC-----------TTHHHHHHHHHHH
T ss_pred ---CeEEEecCCCC-----------CCHHHHHHHHHHH
Confidence 46899999987 3888898888654
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-13 Score=137.48 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=73.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDtP 85 (1021)
+.-+|+++|..|+|||||+++|+...-.. +. .|+... ...+.+ ++..+.+++||||
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--------------~~-------~t~~~~~~~~~~~--~~~~~~l~i~Dt~ 62 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--------------LE-------KTESEQYKKEMLV--DGQTHLVLIREEA 62 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--------------CS-------SCSSSEEEEEEEE--TTEEEEEEEEECS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--------------cC-------CCcceeEEEEEEE--CCEEEEEEEEECC
Confidence 45689999999999999999997532110 00 011111 111222 2335789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HH---hh---cCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QS---QK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~---~~---~~~p~iiviNK~D~~ 142 (1021)
|+.+ ..+++.+|++|+|+|+++.........|. ++ .. .++|+++|+||+|+.
T Consensus 63 G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 63 GAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp SSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred CCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9987 35778899999999999765444444432 22 22 478999999999984
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-14 Score=152.32 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=103.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++..... ......|. +.....+..++ ..+.||||||+++|.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNM--------------DSKSTIGV--EFATRTLEIEGKRIKAQIWDTAGQERYR 76 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC--------------------CC--SEEEEEEEETTEEEEEEEECCTTTTTTT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCcccc--eeEEEEEEECCEEEEEEEEECCCccchh
Confidence 4678899999999999999999743111 11122233 33333444455 578999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++....+. .+++..+... ++| ++||+||+|+.+..... ..+...+.+..+
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 149 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLAHLRAVP---TEESKTFAQENQ--- 149 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGGGGCCSC---HHHHHHHHHHTT---
T ss_pred hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccC---HHHHHHHHHHcC---
Confidence 888888899999999999987544333 3344444443 566 89999999997522111 122334444443
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||+++ .++++++++|.+.+.
T Consensus 150 --~~~~~~Sa~~~-----------~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 150 --LLFTETSALNS-----------ENVDKAFEELINTIY 175 (223)
T ss_dssp --CEEEECCCC-C-----------CCHHHHHHHHHHHHT
T ss_pred --CEEEEEeCCCC-----------CCHHHHHHHHHHHHH
Confidence 57999999987 388889988876543
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-15 Score=156.64 Aligned_cols=158 Identities=16% Similarity=0.097 Sum_probs=101.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.. ...+...+++.+.....+..++ ..+.||||||+++|
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 95 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT----------------YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 95 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC----------------CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC----------------CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhH
Confidence 35778999999999999999999743 1112223334444444455555 56889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
...+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+...... .+...+.+.++
T Consensus 96 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~v~~---~~~~~~~~~~~-- 169 (199)
T 3l0i_B 96 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVDY---TTAKEFADSLG-- 169 (199)
T ss_dssp CCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--CCCCS---CC-CHHHHTTT--
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCCccccCCH---HHHHHHHHHcC--
Confidence 8888888899999999999998554333 3344444333 566 899999999875221100 12223333333
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .|+++++++|.+.+.
T Consensus 170 ---~~~~~vSA~~g-----------~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 170 ---IPFLETSAKNA-----------TNVEQSFMTMAAEIK 195 (199)
T ss_dssp ---CCBCCCCC--------------HHHHHHHHHHTTTTT
T ss_pred ---CeEEEEECCCC-----------CCHHHHHHHHHHHHH
Confidence 46899999987 489999999987653
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-14 Score=143.19 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=95.3
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecC
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCP 722 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtp 722 (1021)
+...++.+.+.++|.+++|||||+++|++..... ... +.+.+.....+..++ ..+.|||||
T Consensus 15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~---~t~~~~~~~~~~~~~~~~~~~l~Dt~ 77 (190)
T 3con_A 15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVD--------------EYD---PTIEDSYRKQVVIDGETCLLDILDTA 77 (190)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--------------CCC---TTCCEEEEEEEEETTEEEEEEEEECC
T ss_pred cccccceeEEEEECcCCCCHHHHHHHHHcCCCcc--------------ccC---CccceEEEEEEEECCEEEEEEEEECC
Confidence 4455677889999999999999999999743110 000 111111122333444 458899999
Q ss_pred ChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 723 GHADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 723 G~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
|+++|...+..++..+|++++|+|+++....+. ..++..+... ++| +++|+||+|+.+..... +++.++.
T Consensus 78 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~----~~~~~~~ 152 (190)
T 3con_A 78 GQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRTVDT----KQAHELA 152 (190)
T ss_dssp C-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSCH----HHHHHHH
T ss_pred ChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCcccCCH----HHHHHHH
Confidence 999999988899999999999999987543222 3333333332 677 99999999987522111 2334444
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.++ ++++++||+++. ++++++++|.+.+
T Consensus 153 ~~~~-----~~~~~~Sa~~~~-----------gi~~l~~~l~~~~ 181 (190)
T 3con_A 153 KSYG-----IPFIETSAKTRQ-----------GVEDAFYTLVREI 181 (190)
T ss_dssp HHHT-----CCEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred HHcC-----CeEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 4444 468999999873 8888888886643
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=150.72 Aligned_cols=163 Identities=14% Similarity=0.062 Sum_probs=106.7
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++..... ......|.+. .....+......+.||||||+++|.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 89 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPE--------------TYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYD 89 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGT
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCC--------------CcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHH
Confidence 455778899999999999999999743110 0011112222 1122233334578899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHH---------HHHHHHHH
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLD---------LVEMEIRE 795 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~---------~~~~~~~~ 795 (1021)
..+..+++.+|++|+|+|+++...... ..++..+... ++| +++|+||+|+.++..... ...++...
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence 888888999999999999998554333 3444555554 667 999999999975211000 11233445
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcch-HHHHHHhhhccC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTS-IKKLLDVLDSSI 842 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~-i~~Ll~~l~~~l 842 (1021)
+.+.+++ .+++++||++| .| ++++++.|.+.+
T Consensus 169 ~~~~~~~----~~~~e~SA~~g-----------~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 169 IAKQLGA----EIYLEGSAFTS-----------EKSIHSIFRTASMLC 201 (214)
T ss_dssp HHHHHTC----SEEEECCTTTC-----------HHHHHHHHHHHHHHH
T ss_pred HHHHcCC----CEEEEeccCCC-----------cccHHHHHHHHHHHH
Confidence 5555543 27999999987 36 889998887654
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=151.43 Aligned_cols=116 Identities=13% Similarity=0.162 Sum_probs=85.7
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|.+|+|||||+++|+....... ....|.|+......+.+. .++.+++|||||+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~-----------------~~~~~~Ti~~~~~~~~~~---~~~~l~i~Dt~G~ 62 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFD-----------------TRRLGATIDVEHSHLRFL---GNMTLNLWDCGGQ 62 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGG-----------------GGGCCCCCSEEEEEEEET---TTEEEEEEEECCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc-----------------ccCcCCccceEEEEEEeC---CceEEEEEECCCc
Confidence 36799999999999999999864221111 124466777666655552 1789999999999
Q ss_pred CCc-----HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-H---h--hcCCCEEEEEeCcCCCC
Q psy5021 88 VDF-----TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-S---Q--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f-----~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~---~--~~~~p~iiviNK~D~~~ 143 (1021)
.+| ...+..+++.+|++|+|+|+++....+....|.. + . ..++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 63 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 998 5567778899999999999998765555544422 2 2 23899999999999864
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-14 Score=156.73 Aligned_cols=157 Identities=19% Similarity=0.119 Sum_probs=105.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.... ... .|+......++..+..+.||||||+++|..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~---------------~~~----pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV---------------TTI----PTIGFNVETVEYKNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE---------------EEE----EETTEEEEEEEETTEEEEEEECC-----CC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC---------------Ccc----cccceEEEEEecCcEEEEEEECCCCHhHHH
Confidence 4567899999999999999999874310 000 144444556777888999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHH-HHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLA-RQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~-~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++|+|+|+++.... ...+.+..+ ... ++| +|||+||+|+.+... .+.+..+ +.......
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~-~~~i~~~----~~~~~~~~ 298 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMN-AAEITDK----LGLHSLRH 298 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HHHHHHH----HTCTTCCS
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcccC-HHHHHHH----hchhhhhc
Confidence 999999999999999999875432 333333332 222 667 999999999976322 2222222 22222223
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++++++||++| .|+++|++.|.+.+
T Consensus 299 ~~~~~~~vSAk~g-----------~gi~el~~~l~~~l 325 (329)
T 3o47_A 299 RNWYIQATCATSG-----------DGLYEGLDWLSNQL 325 (329)
T ss_dssp SCEEEEECBTTTT-----------BTHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCC-----------cCHHHHHHHHHHHH
Confidence 4578999999987 48999999987654
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.4e-14 Score=151.02 Aligned_cols=205 Identities=15% Similarity=0.273 Sum_probs=110.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.--||+++|++|+|||||+|+|+......... .+ ......+++++......+.+ ++....+++|||||
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~----~~------~~~~~~~t~~~~~~~~~~~~--~~~~~~l~liDTpG 74 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEY----PG------PSHRIKKTVQVEQSKVLIKE--GGVQLLLTIVDTPG 74 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC-------------------------CCCEEEEEEECC----CCEEEEEEECCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCC----CC------cccccCCceEEEEEEEEEec--CCeEEEEEEEECCC
Confidence 34689999999999999999985322211110 00 00011333444443333333 33346899999999
Q ss_pred CCCc-------HHHH-------HHHhhc-------------cCeEEEEEeCCC-CCchhHHHHHHHHhhcCCCEEEEEeC
Q psy5021 87 HVDF-------TIEV-------ERSLRV-------------LDGAVIIICASS-GIQPQTETVWFQSQKYKVPKMIFVNK 138 (1021)
Q Consensus 87 ~~~f-------~~~~-------~~~l~~-------------~D~~ilvvda~~-g~~~~t~~~~~~~~~~~~p~iiviNK 138 (1021)
+.++ ...+ ..+++. +|+++++++.+. +.......+++.+.. ++|+++|+||
T Consensus 75 ~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK 153 (274)
T 3t5d_A 75 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAK 153 (274)
T ss_dssp CSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEec
Confidence 8544 2222 444443 778999986664 888889998888877 9999999999
Q ss_pred cCCCCC-CHHHHHHHHHHHh---CCceeeee-----------------ee---cccCCceeeEEecccceeeeecCCCee
Q psy5021 139 MDRIGA-NYNNCIIDIKKKF---NCIVLPIN-----------------FN---IGIEENYEGIVDIINKKSFFWKENSII 194 (1021)
Q Consensus 139 ~D~~~~-~~~~~~~~i~~~l---~~~~~~~~-----------------~p---~~~~~~~~g~id~~~~~~~~~~~~~~~ 194 (1021)
+|+... +.....+.+.+.+ +..+.++. +| +++...+....+.+..+.+.|+
T Consensus 154 ~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~vv~s~~~~~~~~~~~~~r~y~wg----- 228 (274)
T 3t5d_A 154 ADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWG----- 228 (274)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSEECCCCCCC--------CEEECSSC-----
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCcEEEEeeeEEeeCCeEEEeeecccc-----
Confidence 998643 2333444555544 22222111 11 2223333333455556666663
Q ss_pred eccCChhhHHHHHHHHHHHH-----HHhcCCCHHHHHHHH
Q psy5021 195 IKNIDKDQLSAFDYYNELML-----ETLSNNDEFFLEKYI 229 (1021)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~-----e~~~~~d~~l~e~~l 229 (1021)
..+++..........|..|+ |.....++.+.|.|.
T Consensus 229 ~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~yr 268 (274)
T 3t5d_A 229 VAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYR 268 (274)
T ss_dssp EEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHHH
T ss_pred eEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233333333445555555 555666666677664
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-14 Score=163.31 Aligned_cols=151 Identities=21% Similarity=0.186 Sum_probs=111.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh-hh---
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA-DY--- 727 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~-~~--- 727 (1021)
+.++++|.+|+|||||+|+|++....+ .....|+|.+.....+..++..+.||||||+. ++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~---------------vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ 308 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI---------------VTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDL 308 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC---------------CCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTT
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCc---------------cCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhh
Confidence 578999999999999999999854221 11234677787777788889999999999998 54
Q ss_pred -----HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 -----IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 -----~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
...+..++..+|++|+|+|++++...+..+.+..+ .++| +|+|+||+|+.+... . +++.+++ ++
T Consensus 309 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~p-iivV~NK~DL~~~~~-~----~~~~~~~---~~ 377 (482)
T 1xzp_A 309 VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR-YLVVINKVDVVEKIN-E----EEIKNKL---GT 377 (482)
T ss_dssp CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSS-EEEEEEECSSCCCCC-H----HHHHHHH---TC
T ss_pred HHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCC-EEEEEECcccccccC-H----HHHHHHh---cC
Confidence 24567788999999999999988766666665544 3677 899999999975211 1 2223332 11
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..+++++||++|. |+++|+++|.+.+
T Consensus 378 ---~~~~i~iSAktg~-----------Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 378 ---DRHMVKISALKGE-----------GLEKLEESIYRET 403 (482)
T ss_dssp ---STTEEEEEGGGTC-----------CHHHHHHHHHHHT
T ss_pred ---CCcEEEEECCCCC-----------CHHHHHHHHHHHH
Confidence 2468999999883 8888888887644
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-14 Score=143.95 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=102.0
Q ss_pred CcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCC
Q psy5021 646 STDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPG 723 (1021)
Q Consensus 646 ~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG 723 (1021)
....+.+.+.++|.+++|||||+++|++..... ..... + ......+..++ ..+.+|||||
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~--------------~~~~t-~---~~~~~~~~~~~~~~~l~i~Dt~G 76 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ--------------EESPE-G---GRFKKEIVVDGQSYLLLIRDEGG 76 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC--------------CCCTT-C---EEEEEEEEETTEEEEEEEEECSS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC--------------CcCCC-c---ceEEEEEEECCEEEEEEEEECCC
Confidence 445677889999999999999999999743110 00111 1 11123344455 4567799999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
+++|. +++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+.+...+ ....++..++.+
T Consensus 77 ~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~-~v~~~~~~~~~~ 149 (184)
T 3ihw_A 77 PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPR-VIDDSRARKLST 149 (184)
T ss_dssp SCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCC-CSCHHHHHHHHH
T ss_pred Chhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc-ccCHHHHHHHHH
Confidence 99886 6788999999999998554333 344444444 2567 8999999998531110 001123444554
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.++ .++++++||++| .|+++++++|.+.
T Consensus 150 ~~~----~~~~~e~Sa~~~-----------~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 150 DLK----RCTYYETCATYG-----------LNVERVFQDVAQK 177 (184)
T ss_dssp HTT----TCEEEEEBTTTT-----------BTHHHHHHHHHHH
T ss_pred HcC----CCeEEEecCCCC-----------CCHHHHHHHHHHH
Confidence 444 257899999987 3888898888653
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-14 Score=143.93 Aligned_cols=157 Identities=19% Similarity=0.137 Sum_probs=101.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++..... ... .+++.+.....+..++ ..+.+|||||++++.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------------~~~--~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~ 86 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDS--------------AHE--PENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG 86 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCG--------------GGT--TTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCc--------------cCC--CCcccceEEEEEEECCEEEEEEEEecCCCccch
Confidence 4678899999999999999998643111 111 1222222233344444 456789999998875
Q ss_pred H-HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 729 K-NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 729 ~-~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
. ....+++.+|++|+|+|+++... ....+++..+.. .++| +|+|+||+|+.+..... .++...+.+..+
T Consensus 87 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~a~~~~- 161 (195)
T 3cbq_A 87 GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREVS---LEEGRHLAGTLS- 161 (195)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT-
T ss_pred hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhccccCCcC---HHHHHHHHHHhC-
Confidence 5 45566789999999999987432 223344444443 2677 99999999997522110 122333444443
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||+++. +++++++.|.+.+.
T Consensus 162 ----~~~~e~Sa~~~~-----------~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 162 ----CKHIETSAALHH-----------NTRELFEGAVRQIR 187 (195)
T ss_dssp ----CEEEEEBTTTTB-----------SHHHHHHHHHHHHH
T ss_pred ----CEEEEEcCCCCC-----------CHHHHHHHHHHHHH
Confidence 478999999873 88999988876553
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-14 Score=143.28 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=102.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++..... ......+... .....+......+.||||||+++|..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 70 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPE--------------NYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDN 70 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTT
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhh
Confidence 34677899999999999999999743110 0011111111 11122222335788999999999987
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHh
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIREL 796 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~ 796 (1021)
.+..++..+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.++.....++ .++..++
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 77778899999999999987443222 2233344432 566 99999999997532111111 1234445
Q ss_pred hhccccCCCceEEEEeccc-ccccCCCCCccCcchHHHHHHhhhc
Q psy5021 797 LTEYDFDGENTKIVIGSAL-LALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~-~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+.++ ..+++++||+ ++ .|++++++.+.+
T Consensus 150 ~~~~~----~~~~~e~Sa~~~~-----------~gi~~l~~~i~~ 179 (184)
T 1m7b_A 150 AKQIG----AATYIECSALQSE-----------NSVRDIFHVATL 179 (184)
T ss_dssp HHHHT----CSEEEECBTTTBH-----------HHHHHHHHHHHH
T ss_pred HHHcC----CcEEEEeeecCCC-----------cCHHHHHHHHHH
Confidence 55444 2579999998 45 388999988765
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-14 Score=143.53 Aligned_cols=158 Identities=14% Similarity=0.058 Sum_probs=99.1
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
..+.+.+.++|.+++|||||+++|++.... .....+.|.+. .....+......+.||||||+++|
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--------------~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFI--------------SEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTP 82 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCC--------------SCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---C
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCC--------------cccCCCcccee-eEEEEECCEEEEEEEEECCCCCcc
Confidence 345678899999999999999999974311 00111122222 112222223356789999999988
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
.. +..+++.+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+.+..... .++..++.+.+
T Consensus 83 ~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~ 157 (187)
T 3c5c_A 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQVT---KAEGVALAGRF 157 (187)
T ss_dssp CC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCSSC---HHHHHHHHHHH
T ss_pred hh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCccC---HHHHHHHHHHc
Confidence 65 356889999999999998743322 2334444443 3677 99999999996522111 12334444444
Q ss_pred ccCCCceEEEEecc-cccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 801 DFDGENTKIVIGSA-LLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa-~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+ ++++++|| ++| .+++++++.|.+.
T Consensus 158 ~-----~~~~e~Sa~~~g-----------~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 158 G-----CLFFEVSACLDF-----------EHVQHVFHEAVRE 183 (187)
T ss_dssp T-----CEEEECCSSSCS-----------HHHHHHHHHHHHH
T ss_pred C-----CcEEEEeecCcc-----------ccHHHHHHHHHHH
Confidence 4 47999999 776 4889999888653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-14 Score=162.58 Aligned_cols=173 Identities=16% Similarity=0.087 Sum_probs=111.0
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-CHHHHHHHHH
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA-NYNNCIIDIK 154 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~ 154 (1021)
++.++||||||+.++... ..+.+|++|+|+|+..+...+.... ...++|.++|+||+|+... +....+++++
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~ 220 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHMYE 220 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHHHH
Confidence 789999999999887654 4689999999999987643221111 1135789999999999754 3455556666
Q ss_pred HHhCC-ce-----eeeeeecc--cCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHH
Q psy5021 155 KKFNC-IV-----LPINFNIG--IEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLE 226 (1021)
Q Consensus 155 ~~l~~-~~-----~~~~~p~~--~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e 226 (1021)
+.++. ++ .+..+|+. .+.++.++++.+......|..+ ..+| .....+++..+.|.+ ++++++
T Consensus 221 ~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~~----~~~~---~~r~~~~~~~~~e~i---~e~l~~ 290 (341)
T 2p67_A 221 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTAS----GRLQ---QVRQQQSVEWLRKQT---EEEVLN 290 (341)
T ss_dssp HHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHT----THHH---HHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHhC----ChHH---HHHHHHHHHHHHHHH---HHHHHH
Confidence 64321 10 12233443 5556666666665543333211 0111 122344666677775 889999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHH
Q psy5021 227 KYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICE 274 (1021)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~ 274 (1021)
+|+++ ++.+++...+++++..+.+.|++| .+.|++.+..
T Consensus 291 ~~~~~-~~~~~~~~~l~~~v~~~~~~P~~~--------~~~~~~~~~~ 329 (341)
T 2p67_A 291 HLFAN-EDFDRYYRQTLLAVKNNTLSPRTG--------LRQLSEFIQT 329 (341)
T ss_dssp HHHHC-HHHHHHHHHHHHHHHTTSSCHHHH--------HHHHHHHHHC
T ss_pred HHHhC-cchhHHHHHHHHHHHhCCCCHHHH--------HHHHHHHHhh
Confidence 99985 778889999999999999999865 3577777654
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-14 Score=143.50 Aligned_cols=122 Identities=23% Similarity=0.313 Sum_probs=74.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC-
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH- 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~- 87 (1021)
.+|+++|+.|+|||||+++|+...-... ...|+|.... .+.+. .+++|||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~t~~~~--~~~~~------~~~l~Dt~G~~ 55 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRG------------------KRPGVTRKII--EIEWK------NHKIIDMPGFG 55 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSS------------------SSTTCTTSCE--EEEET------TEEEEECCCBS
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccC------------------CCCCccceeE--EEecC------CEEEEECCCcc
Confidence 5799999999999999999974221100 1123443322 12221 6899999994
Q ss_pred ----------CCcHHHHHHHhhc----cCeEEEEEeCCCC-----------CchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 ----------VDFTIEVERSLRV----LDGAVIIICASSG-----------IQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ----------~~f~~~~~~~l~~----~D~~ilvvda~~g-----------~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
..|...+..+++. +++++.|+|+... ...++.++++.+...++|+++|+||+|+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (190)
T 2cxx_A 56 FMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI 135 (190)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred ccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhcc
Confidence 4444555555544 5566667776431 11223345556666799999999999997
Q ss_pred CCCHHHHHHHHHHHh
Q psy5021 143 GANYNNCIIDIKKKF 157 (1021)
Q Consensus 143 ~~~~~~~~~~i~~~l 157 (1021)
... .+..+++.+.+
T Consensus 136 ~~~-~~~~~~~~~~~ 149 (190)
T 2cxx_A 136 KNV-QEVINFLAEKF 149 (190)
T ss_dssp SCH-HHHHHHHHHHH
T ss_pred CcH-HHHHHHHHHHh
Confidence 543 33344444444
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=148.38 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=108.2
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh-
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY- 727 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~- 727 (1021)
.+...++++|++++|||||+|+|++........ ...++|.+.....+.+.+..+.||||||+.++
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL--------------GSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT--------------TSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC--------------CCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 456789999999999999999999754221111 11125666666667778899999999998764
Q ss_pred ----------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEe-eccccchhhHHHHHH-
Q psy5021 728 ----------IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV-----GVPNIVVFLN-KADCVQDKELLDLVE- 790 (1021)
Q Consensus 728 ----------~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~-----~ip~iIvviN-K~Dl~~~~~~~~~~~- 790 (1021)
.+.+..+++.+|++|+|+|++. ...+....+..+... +.| .|+++| |+|+... ...+.+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~-~i~vv~nK~Dl~~~-~~~~~i~~ 162 (260)
T 2xtp_A 86 DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGH-TIVLFTHKEDLNGG-SLMDYMHD 162 (260)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGG-EEEEEECGGGGTTC-CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhcc-EEEEEEcccccCCc-cHHHHHHh
Confidence 3333446788999999999985 666666666666665 567 555666 9999752 2112111
Q ss_pred ---HHHHHhhhccccCCCceEE--EEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 791 ---MEIRELLTEYDFDGENTKI--VIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 791 ---~~~~~~l~~~~~~~~~~~i--i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.++..+++.++.. ...+ +++||+++ .++++|++.|.+.++
T Consensus 163 ~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~~-----------~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 163 SDNKALSKLVAACGGR--ICAFNNRAEGSNQD-----------DQVKELMDCIEDLLM 207 (260)
T ss_dssp CCCHHHHHHHHHTTTC--EEECCTTCCHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhCCe--EEEecCcccccccH-----------HHHHHHHHHHHHHHH
Confidence 2233333333311 0012 78899987 388889888877553
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=142.61 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=103.2
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.... ... ...+.+.....+..++. .+.||||||+++|
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~--------------~~~---~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 81 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYP--------------TEY---IPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-------------------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC--------------CCC---CCcccceeEEEEEECCEEEEEEEEECCCCHHH
Confidence 4567889999999999999999974310 000 11111222233444554 5679999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHH---------HHHHHH
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDL---------VEMEIR 794 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~---------~~~~~~ 794 (1021)
...+..++..+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+....... ..++..
T Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 160 (201)
T 2q3h_A 82 DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDLREDVKVLIELDKCKEKPVPEEAAK 160 (201)
T ss_dssp SSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred HHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhchhhhhhhcccccccCCHHHHH
Confidence 87777788999999999999875433332 244444443 677 8999999999753211110 112334
Q ss_pred HhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 795 ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 795 ~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+.+.+++ .+++++||++| .|+++++++|.+.+
T Consensus 161 ~~~~~~~~----~~~~~~Sa~~g-----------~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 161 LLAEEIKA----ASYIECSALTQ-----------KNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHTC----SEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HHHHhcCC----cEEEEEecCCC-----------CCHHHHHHHHHHHH
Confidence 44444442 37899999987 38888998887644
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-14 Score=152.14 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=87.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+....++|+++|++|+|||||+++|+....... .....++|.......+.|. +..+++||
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~~~----~~~i~liD 84 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHS----------------GTAAKSITKKCEKRSSSWK----ETELVVVD 84 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-----------------------CCSCEEEEEEET----TEEEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCcc----------------CCCCCceeeeEEEEEEEeC----CceEEEEE
Confidence 345678999999999999999999974322110 0122355666666667777 78999999
Q ss_pred CCCCCCc-----------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHh-----hcCCCEEEEEeCcCCCCCC-H
Q psy5021 84 TPGHVDF-----------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ-----KYKVPKMIFVNKMDRIGAN-Y 146 (1021)
Q Consensus 84 tPG~~~f-----------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~-----~~~~p~iiviNK~D~~~~~-~ 146 (1021)
|||+.+. ...+..+.+.+|++|+|+|++.... .....+..+. ....|+++|+||+|+.... .
T Consensus 85 TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 85 TPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp CCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-----
T ss_pred CCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccH
Confidence 9997653 3333444556799999999975433 3333333332 2356999999999986542 2
Q ss_pred H-------HHHHHHHHHhCCceeeeeee
Q psy5021 147 N-------NCIIDIKKKFNCIVLPINFN 167 (1021)
Q Consensus 147 ~-------~~~~~i~~~l~~~~~~~~~p 167 (1021)
. +.++++.+.++.....++.+
T Consensus 164 ~~~i~~~~~~l~~l~~~~~~~~~~~~~~ 191 (239)
T 3lxx_A 164 HDYLREAPEDIQDLMDIFGDRYCALNNK 191 (239)
T ss_dssp -------CHHHHHHHHHHSSSEEECCTT
T ss_pred HHHHHhchHHHHHHHHHcCCEEEEEECC
Confidence 2 24555556666655444433
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.8e-14 Score=144.34 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=102.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++..... ......+.+. .....++.....+.||||||+++|..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 91 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPE--------------NYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDN 91 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC--------------CcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhH
Confidence 45678899999999999999999743110 0011111111 11122222335788999999999987
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHh
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIREL 796 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~ 796 (1021)
.+..+++.+|++|+|+|+++...... ..++..+... ++| +|+|+||+|+.++......+ .++..++
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 170 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 170 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhccchhhhhhhcccccCCCCHHHHHHH
Confidence 77778899999999999987433222 2333444442 566 99999999997532111111 1234445
Q ss_pred hhccccCCCceEEEEeccc-ccccCCCCCccCcchHHHHHHhhhc
Q psy5021 797 LTEYDFDGENTKIVIGSAL-LALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~-~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+.++. .+++++||+ ++ .|++++++.|.+
T Consensus 171 ~~~~~~----~~~~e~SAk~~~-----------~gv~~lf~~l~~ 200 (205)
T 1gwn_A 171 AKQIGA----ATYIECSALQSE-----------NSVRDIFHVATL 200 (205)
T ss_dssp HHHHTC----SEEEECCTTTCH-----------HHHHHHHHHHHH
T ss_pred HHHcCC----CEEEEeeeccCC-----------cCHHHHHHHHHH
Confidence 544442 479999998 45 388889888765
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-14 Score=157.63 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=77.7
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+.+|+++|.+|+|||||+++|......+ .+ ....|+......+.+.. ...+.++||||+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i------------~~------~~ftTl~p~~g~v~~~~---~~~~~l~DtPG~ 216 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKI------------AD------YHFTTLVPNLGMVETDD---GRSFVMADLPGL 216 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEE------------SS------TTSSCCCCCEEEEECSS---SCEEEEEEHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcc------------cc------CCccccCceEEEEEeCC---CceEEEecCCCC
Confidence 4579999999999999999985322111 11 11335555544555551 378999999996
Q ss_pred CC-------cHHHHHHHhhccCeEEEEEeCCC---CCc-hhHHHHHHHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 88 VD-------FTIEVERSLRVLDGAVIIICASS---GIQ-PQTETVWFQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~-------f~~~~~~~l~~~D~~ilvvda~~---g~~-~~t~~~~~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
.+ +.....+.+..+|++|+|+|+++ ... .....++..+.. .++|+++|+||+|+..
T Consensus 217 i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 217 IEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp HHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred cccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 43 45566667777999999999986 222 222333344443 4799999999999863
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=141.12 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=101.0
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++..... ......+... .....+......+.||||||+++ .
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~ 89 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW--------------EYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-T 89 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCS--------------CCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCc--------------ccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-c
Confidence 345788999999999999999999743110 0111112111 11122222335688999999988 5
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+..... .++..++.+.++
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~-- 163 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQVS---TEEGEKLATELA-- 163 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT--
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECcccccccccC---HHHHHHHHHHhC--
Confidence 667777899999999999987432 222333433333 3677 99999999997532111 122333443333
Q ss_pred CCceEEEEecccccccCCCCCccCcc-hHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTT-SIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~-~i~~Ll~~l~~~l 842 (1021)
++++++||++| . |+++++++|.+.+
T Consensus 164 ---~~~~~~Sa~~g-----------~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 164 ---CAFYECSACTG-----------EGNITEIFYELCREV 189 (196)
T ss_dssp ---SEEEECCTTTC-----------TTCHHHHHHHHHHHH
T ss_pred ---CeEEEECCCcC-----------CcCHHHHHHHHHHHH
Confidence 57999999987 4 7888888876543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=138.73 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=101.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-----CCeEEEEEecCChhh
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-----ENKHYAHVDCPGHAD 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-----~~~~i~liDtpG~~~ 726 (1021)
+.+.++|.+++|||||+++|++..... ........| ++.....+.. ....+.+|||||+++
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~------------~~~~~~t~g--~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSD------------LGMQSATVG--IDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------------------CS--EEEEEEEC---------CEEEEEEECSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCcc------------CCCcceecc--EEeEEeeeccccCCCCceEEEEEecCCCHH
Confidence 457889999999999999999742110 001112223 2332222221 345789999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCC--cHHHHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGP--MPQTREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~--~~qt~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
|......+++.+|++++|+|.+++. +.....++..+... +.| +++|.||+|+.+.....+........+.+.+++
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDEKQRKACMSKITKELLNKRGF 147 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECCCcccchhhHHHHHHHHHHHHHhcCC
Confidence 9888788889999999999998753 22233444444332 566 899999999976322211122333445555554
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
. ...+++++||+++. .++++|++.|.+.+
T Consensus 148 ~-~~~~~~~~Sa~~~~----------~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 148 P-AIRDYHFVNATEES----------DALAKLRKTIINES 176 (184)
T ss_dssp C-EEEEEEECCTTSCC----------HHHHHHHHHHHHHH
T ss_pred c-chhheEEEecccCc----------hhHHHHHHHHHHHH
Confidence 2 11248999999762 27888888886644
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=139.28 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=96.2
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
.+.+.+.++|.+++|||||+++|++..... .....|... ...+..++ ..+.+|||||+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~---------------~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV---------------LEKTESEQY---KKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC---------------CSSCSSSEE---EEEEEETTEEEEEEEEECSSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC---------------cCCCcceeE---EEEEEECCEEEEEEEEECCCCch
Confidence 456788999999999999999999743210 111122211 22233344 4578899999987
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc------CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTRE-HILLARQV------GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e-~l~~~~~~------~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
..+++.+|++|+|+|+++....+... ++..+... ++| +++|+||+|+.+...+ ....++..++.+.
T Consensus 67 -----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~v~~~~~~~~~~~ 139 (178)
T 2iwr_A 67 -----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRISASSPR-VVGDARARALXAD 139 (178)
T ss_dssp -----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTCBTTBCC-CSCHHHHHHHHHH
T ss_pred -----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccC-cCCHHHHHHHHHh
Confidence 34678899999999998754333332 22233332 566 9999999998421100 0001223333333
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+ .++++++||++| .|++++++.|.+.
T Consensus 140 ~~----~~~~~~~Sa~~~-----------~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 140 MK----RCSYYETXATYG-----------LNVDRVFQEVAQK 166 (178)
T ss_dssp HS----SEEEEEEBTTTT-----------BTHHHHHHHHHHH
T ss_pred hc----CCeEEEEecccc-----------CCHHHHHHHHHHH
Confidence 32 368999999987 3888888888654
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.8e-15 Score=153.12 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=79.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... .. |+.... ...+..++..+.+.+||||
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------------~~-t~~~~~-~~~~~~~~~~~~l~i~Dt~ 86 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY-------------------IP-TVFDNY-SANVMVDGKPVNLGLWDTA 86 (204)
Confidence 44578999999999999999999632210000 00 110000 0011112336778899999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhhc--CCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+..
T Consensus 87 G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 99999999999999999999999998765444432 33 333333 799999999999864
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=153.87 Aligned_cols=137 Identities=11% Similarity=0.142 Sum_probs=86.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCC-----Cc--ccccc---c-------------------CCcccccChH-----
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGS-----SH--KIGEV---H-------------------HGTTITDWMQ----- 52 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~-----~~--~~g~~---~-------------------~~~~~~d~~~----- 52 (1021)
....|+|+|++|+|||||+|+|+..... +. .++.+ . .+....|+..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 4678999999999999999999865431 10 11000 0 0011112111
Q ss_pred -HHhhhC----ceeeeeeeEEEeecccCceeEEEEcCCCCCC-------------cHHHHHHHhhccCeEEEEEeC-CCC
Q psy5021 53 -QEQERG----ITITSASVSIFWEVNKFKYMINIIDTPGHVD-------------FTIEVERSLRVLDGAVIIICA-SSG 113 (1021)
Q Consensus 53 -~e~~rg----iTi~~~~~~~~~~~~~~~~~i~liDtPG~~~-------------f~~~~~~~l~~~D~~ilvvda-~~g 113 (1021)
.+..+. -.+......+.+.. .....++||||||+.+ |...+..+++.+|++++|+|+ ..+
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYS-PHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEE-TTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHhcCCCCCccCccEEEEEec-CCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 110010 02222333444321 1257899999999865 567788899999999999997 556
Q ss_pred CchhH-HHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 114 IQPQT-ETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 114 ~~~~t-~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
...+. ..+++.+...+.|+++|+||+|+...
T Consensus 182 ~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 182 LANSDALQLAKEVDPEGKRTIGVITKLDLMDK 213 (315)
T ss_dssp STTCSHHHHHHHHCSSCSSEEEEEECTTSSCS
T ss_pred hhhhHHHHHHHHhCCCCCcEEEEEcCcccCCc
Confidence 55444 47778888889999999999998643
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=138.60 Aligned_cols=153 Identities=22% Similarity=0.294 Sum_probs=98.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC--------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG-------- 723 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG-------- 723 (1021)
+.+.++|.+++|||||+++|++.... .+...|+|.+.....+. .+.+|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR----------------RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS----------------SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc----------------cCCCCCccceeEEEecC----CEEEEECCCccccccCC
Confidence 35678999999999999999974311 11223555444443332 689999999
Q ss_pred ---hhhhHHHHHHHhh----hCCEEEEEEECCCC-----------CcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhH
Q psy5021 724 ---HADYIKNMITGAA----QMDGAILVCSAVDG-----------PMPQTREHILLARQVGVPNIVVFLNKADCVQDKEL 785 (1021)
Q Consensus 724 ---~~~~~~~~~~~~~----~aD~ailVvDa~~g-----------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~ 785 (1021)
+++|...+..+++ .+++++.|+|+... ...++.+.+..+...++| +++|+||+|+....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-- 138 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV-- 138 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH--
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-eEEEeehHhccCcH--
Confidence 6777666665554 46677788886531 111223344455566888 99999999997632
Q ss_pred HHHHHHHHHHhhhccccCC--CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 786 LDLVEMEIRELLTEYDFDG--ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~~~~~--~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..+..++.+.++... ...+++++||++| .|+++++++|.+.+
T Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-----------~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 139 ----QEVINFLAEKFEVPLSEIDKVFIPISAKFG-----------DNIERLKNRIFEVI 182 (190)
T ss_dssp ----HHHHHHHHHHHTCCGGGHHHHEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhhhhhhccCCcEEEEecCCC-----------CCHHHHHHHHHHhc
Confidence 122333334444310 0236899999987 38899999887654
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=147.93 Aligned_cols=166 Identities=17% Similarity=0.161 Sum_probs=96.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhh--
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHAD-- 726 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~-- 726 (1021)
.+++.++|.+|+|||||+|+|++........+. .......+++++.....+..++. .+++|||||+.+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~ 79 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPG--------PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV 79 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCSCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCC--------cccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccc
Confidence 367889999999999999999875432221100 00111334455555555555553 889999999832
Q ss_pred -----hHHHH-------HHHhhh-------------CCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 727 -----YIKNM-------ITGAAQ-------------MDGAILVCSAVD-GPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 727 -----~~~~~-------~~~~~~-------------aD~ailVvDa~~-g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
+.... ..++.. +|+++++++.+. +......+.+..+.. ++| +|+|+||+|+.
T Consensus 80 ~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~p-vi~V~nK~D~~ 157 (274)
T 3t5d_A 80 DNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADTL 157 (274)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSC-EEEEESSGGGS
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCC-EEEEEeccCCC
Confidence 22221 333333 789999996654 777888887777766 788 99999999997
Q ss_pred chhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 781 QDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
... .....++++.+.+...+ ++++++||.++ .++.+++++|.+.+|
T Consensus 158 ~~~-e~~~~~~~i~~~l~~~~-----i~v~~~sa~~~-----------~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 158 TPE-ECQQFKKQIMKEIQEHK-----IKIYEFPETDD-----------EEENKLVKKIKDRLP 203 (274)
T ss_dssp CHH-HHHHHHHHHHHHHHHTT-----CCCCCC----------------------CHHHHHTCS
T ss_pred CHH-HHHHHHHHHHHHHHHcC-----CeEEcCCCCCC-----------hhHHHHHHHHhcCCC
Confidence 633 23444455665555444 45788899876 367778888877553
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.5e-15 Score=152.31 Aligned_cols=159 Identities=18% Similarity=0.085 Sum_probs=103.1
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEE--EEeeCCeEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV--EYESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~--~~~~~~~~i~liDtpG~~~ 726 (1021)
-+.+.+.++|.+++|||||+++|++...... ....+.+.... .+......+.||||||+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 4568899999999999999999986431100 00111111111 1222334566999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHH---------HHHHH
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDL---------VEMEI 793 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~---------~~~~~ 793 (1021)
|...+..+++.+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+.....+. ...+.
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
Confidence 998888899999999999999876543332 344444444 677 8999999999753211111 11223
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+.+.+++ .+++++||++|. |++++++.|.+
T Consensus 170 ~~~~~~~~~----~~~~~vSA~~g~-----------gi~~l~~~l~~ 201 (204)
T 3th5_A 170 LAMAKEIGA----VKYLECSALTQR-----------GLKTVFDEAIR 201 (204)
Confidence 333333332 378999999883 78888888764
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=149.45 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=85.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc--C-------------------CcccccCh--HHH------hh
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH--H-------------------GTTITDWM--QQE------QE 56 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~--~-------------------~~~~~d~~--~~e------~~ 56 (1021)
....+|+++|.+|+|||||+++|+.........+.+. + |..+++.. ..+ +-
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3457899999999999999999985443211000000 0 11111111 101 11
Q ss_pred ----hCceeeeeeeEEEeecccCceeEEEEcCCCCC-------------CcHHHHHHHhhccCeEE-EEEeCCCCCchhH
Q psy5021 57 ----RGITITSASVSIFWEVNKFKYMINIIDTPGHV-------------DFTIEVERSLRVLDGAV-IIICASSGIQPQT 118 (1021)
Q Consensus 57 ----rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~-------------~f~~~~~~~l~~~D~~i-lvvda~~g~~~~t 118 (1021)
.|++.....+.+... ....++||||||+. .|...+..+++.+|.+| +|+|++.+...+.
T Consensus 104 ~g~~~gi~~~~~~~~~~~~---~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~ 180 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSP---HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 180 (299)
T ss_dssp CSSTTCCCSCCEEEEEEET---TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH
T ss_pred cccCCCccccceEEEEeCC---CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH
Confidence 233322222222221 13689999999974 35566778888888777 6999998887776
Q ss_pred H-HHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 119 E-TVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 119 ~-~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
. .+++.+...+.|+++|+||+|+..
T Consensus 181 ~~~~~~~~~~~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 181 ALKIAKEVDPQGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHHHHCTTCSSEEEEEECGGGSC
T ss_pred HHHHHHHhCCCCCeEEEEEEccccCC
Confidence 4 467777778899999999999864
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-14 Score=155.95 Aligned_cols=154 Identities=15% Similarity=0.174 Sum_probs=103.6
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhh----
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHAD---- 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~---- 726 (1021)
..++++|++|+|||||+++|++....+...+ ..|.+.....+..++ ..+.||||||+..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~----------------ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYH----------------FTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTT----------------SSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCC----------------ccccCceEEEEEeCCCceEEEecCCCCcccccc
Confidence 3689999999999999999998543222211 234444444566654 7899999999754
Q ss_pred ---hHHHHHHHhhhCCEEEEEEECCC----CCcHHHHHHHHHHHHc-----CCCeEEEEEeeccccchhhHHHHHHHHHH
Q psy5021 727 ---YIKNMITGAAQMDGAILVCSAVD----GPMPQTREHILLARQV-----GVPNIVVFLNKADCVQDKELLDLVEMEIR 794 (1021)
Q Consensus 727 ---~~~~~~~~~~~aD~ailVvDa~~----g~~~qt~e~l~~~~~~-----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~ 794 (1021)
+....+..+..+|++|+|+|+++ ....+...++..+..+ ++| +++|+||+|+.+..+ .+.
T Consensus 223 ~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~Dl~~~~e-------~~~ 294 (342)
T 1lnz_A 223 GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKMDMPEAAE-------NLE 294 (342)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECTTSTTHHH-------HHH
T ss_pred cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECccCCCCHH-------HHH
Confidence 34556666778999999999986 2233334455555553 567 888999999976322 122
Q ss_pred HhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 795 ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 795 ~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++.+.+.. ..+++++||+++. ++++|+++|.+.+.
T Consensus 295 ~l~~~l~~---~~~v~~iSA~tg~-----------gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 295 AFKEKLTD---DYPVFPISAVTRE-----------GLRELLFEVANQLE 329 (342)
T ss_dssp HHHHHCCS---CCCBCCCSSCCSS-----------TTHHHHHHHHHHHT
T ss_pred HHHHHhhc---CCCEEEEECCCCc-----------CHHHHHHHHHHHHh
Confidence 22222221 1468999999873 88888888877654
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=140.06 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=73.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
....+|+++|.+|+|||||+++|+.....+.. ++ + .-|.+... ..+.+ ++..+.+.+|||+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~-----------~~-~---~~g~d~~~--~~i~~--~~~~~~l~~~Dt~ 95 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS-----------DC-E---VLGEDTYE--RTLMV--DGESATIILLDMW 95 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCC-----------C-------CCTTEEE--EEEEE--TTEEEEEEEECCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------cC-C---ccceeeEE--EEEEE--CCeeeEEEEeecC
Confidence 34578999999999999999999632222111 00 0 01111111 12222 2335678899999
Q ss_pred CCCC-cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh----cCCCEEEEEeCcCCC
Q psy5021 86 GHVD-FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~-f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~----~~~p~iiviNK~D~~ 142 (1021)
|... +......+++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+.
T Consensus 96 g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 96 ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp TTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred CCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 9877 333334456789999999999874333322223 33332 379999999999984
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=146.16 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=75.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.++.|+|+|++|+|||||+++|..... ..+...+.|.+.....+.+. +..+.++||||
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~------------------~~~~~~~~T~d~~~~~i~~~----g~~v~l~DT~G 235 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ------------------KVDTKLFTTMSPKRYAIPIN----NRKIMLVDTVG 235 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------------------------CCSCEEEEEET----TEEEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc------------------cccCCcccccCCEEEEEEEC----CEEEEEEeCCC
Confidence 456799999999999999999963211 01122345665555566776 67899999999
Q ss_pred CCCc--------HHHHHHHhhccCeEEEEEeCCCCC--ch-hH---HHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 87 HVDF--------TIEVERSLRVLDGAVIIICASSGI--QP-QT---ETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 87 ~~~f--------~~~~~~~l~~~D~~ilvvda~~g~--~~-~t---~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
+... ...+...+..+|++++|+|++++. .. +. ..+++.....++|+++|.||+|+...
T Consensus 236 ~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 236 FIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp BCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred chhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 8431 123445678999999999998764 22 22 22233333357899999999998644
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.9e-13 Score=147.25 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=80.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
....+|+++|..|+|||||+++|....-.... .+ |+.... ...+..++..+.+++||||
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~-------------------~~-t~~~~~-~~~~~~~~~~~~~~l~Dt~ 211 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEY-------------------IP-TVFDNY-SANVMVDGKPVNLGLWDTA 211 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSC-------------------CC-CSEEEE-EEEEEETTEEEEEEEEEEC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCccc-------------------CC-ccccee-EEEEEECCEEEEEEEEeCC
Confidence 34578999999999999999999743211000 01 111111 1112223345678899999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhhc--CCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++++|+|+++........ .| ..+... ++|+++|+||+|+..
T Consensus 212 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp CCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred CchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 99999988888999999999999999865444332 23 333333 899999999999853
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-13 Score=159.67 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=100.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH--
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK-- 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~-- 729 (1021)
+.++++|.+|+|||||+|+|++....+. ....|+|.+.....+..++..+.||||||+.++..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v---------------~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~v 289 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIV---------------TDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQV 289 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCC---------------SCCTTCCHHHHHHEEEETTEEEEECC-----------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccc---------------cCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHH
Confidence 5689999999999999999998542211 11235666666666777889999999999877532
Q ss_pred ------HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 730 ------NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 730 ------~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
.+..++..+|++++|+|++++...+..+++..+. ..| +|+|+||+|+.+.... . .++.+.
T Consensus 290 e~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~p-iivV~NK~Dl~~~~~~-~--------~~~~~~-- 355 (462)
T 3geh_A 290 EKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRP-LILVMNKIDLVEKQLI-T--------SLEYPE-- 355 (462)
T ss_dssp ---------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSC-EEEEEECTTSSCGGGS-T--------TCCCCT--
T ss_pred HHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCc-EEEEEECCCCCcchhh-H--------HHHHhc--
Confidence 2333467899999999999988777766666543 356 8999999999763211 1 111111
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
...+++++||++| .|+++|++.|.+.+.
T Consensus 356 -~~~~~i~iSAktg-----------~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 356 -NITQIVHTAAAQK-----------QGIDSLETAILEIVQ 383 (462)
T ss_dssp -TCCCEEEEBTTTT-----------BSHHHHHHHHHHHHT
T ss_pred -cCCcEEEEECCCC-----------CCHHHHHHHHHHHHh
Confidence 2357899999988 388999998877553
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=147.64 Aligned_cols=158 Identities=23% Similarity=0.252 Sum_probs=101.8
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh--------
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH-------- 724 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~-------- 724 (1021)
+++++|.+|+|||||+|+|++... ..+...+.|.+.....+..++..+.+|||||+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~----------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~l 244 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ----------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQI 244 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc----------------cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHH
Confidence 478999999999999999998531 11223356777777777788889999999997
Q ss_pred -hhhHHHHHHHhhhCCEEEEEEECCCCC--c-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 725 -ADYIKNMITGAAQMDGAILVCSAVDGP--M-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 725 -~~~~~~~~~~~~~aD~ailVvDa~~g~--~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
+.| +.+...+..+|++++|+|++++. . .+.......+... ++| +|+|.||+|+.+.. .......+..+.
T Consensus 245 ve~f-~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl~~~~--~~~~~~~~~~l~ 320 (364)
T 2qtf_A 245 VDAF-FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKIDKINGD--LYKKLDLVEKLS 320 (364)
T ss_dssp HHHH-HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECGGGCCSC--HHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECCCCCCch--HHHHHHHHHHHH
Confidence 233 34556688999999999998754 2 2222223344443 567 89999999997532 111112222222
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+.+. ..+.+++++||+++ .|++.|++.|.+.+.
T Consensus 321 ~~l~--~~~~~~~~~SA~~g-----------~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 321 KELY--SPIFDVIPISALKR-----------TNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHC--SCEEEEEECBTTTT-----------BSHHHHHHHHHHHHH
T ss_pred HHhc--CCCCcEEEEECCCC-----------cCHHHHHHHHHHHhc
Confidence 3221 11346899999987 388899988876553
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.8e-13 Score=149.82 Aligned_cols=158 Identities=18% Similarity=0.110 Sum_probs=105.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeE--EEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH--YAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~--i~liDtpG~~~~~~ 729 (1021)
+.+.++|.+++|||||+++|++..... ...+.+.+.....+..++.. +.||||||+++|..
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 218 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFPG-----------------EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR 218 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCC-----------------SCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCCc-----------------ccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH
Confidence 567888999999999999998643110 01122222333334455554 45999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHh
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIREL 796 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~ 796 (1021)
.+..+++.+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+.....+.. ..+...+
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 297 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 297 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhcccccchhhhccccccccccHHHHHHH
Confidence 888888999999999999875443332 233444444 677 99999999987532211111 1233444
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+..++ .+++++||++| .|++++++.|.+.+
T Consensus 298 ~~~~~~----~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 298 AKEIGA----VKYLECSALTQ-----------RGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHTTC----SEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HHHcCC----cEEEEecCCCC-----------cCHHHHHHHHHHHH
Confidence 444442 37999999987 38899998887643
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=134.71 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=72.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
....|+++|.+|+|||||+++|......+... + ..-|.+... ..+.+ ++....+.+|||+|
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-----------~----~~~~~~~~~--~~~~~--~~~~~~l~~~Dt~~ 65 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-----------X----EVLGEDTYE--RTLMV--DGESATIILLDMWE 65 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-------------------GGGCTTEEE--EEEEE--TTEEEEEEEECCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-----------c----cccceeEEE--EEEEE--CCeEEEEEEEEecc
Confidence 45689999999999999999997544332210 0 001112111 12223 23356788999999
Q ss_pred CCC-cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh----hcCCCEEEEEeCcCCC
Q psy5021 87 HVD-FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~-f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~----~~~~p~iiviNK~D~~ 142 (1021)
... +......+++.+|++++|+|.++.........| ..+. ..++|+++|.||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 66 NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp C----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred CcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 865 323344567889999999999874333332223 3332 2479999999999974
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=142.17 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=91.4
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH---HH
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK---NM 731 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~---~~ 731 (1021)
-.+|..++|||||++++.+... ..+....+.|+......+. ....+.+|||||+++|.. .+
T Consensus 3 vllGdsgvGKTSLl~~~~~~~~---------------~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~ 66 (331)
T 3r7w_B 3 LLMGVRRCGKSSICKVVFHNMQ---------------PLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDS 66 (331)
T ss_dssp EEECSTTSSTTHHHHHHHSCCC---------------SGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHH
T ss_pred EEECCCCCCHHHHHHHHHcCCC---------------CCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhh
Confidence 4678899999999998775321 0011112334443333342 346789999999999964 45
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHH----HHH--cCCCeEEEEEeeccccchhhHH---HHHHHHHHHhhhcccc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTREHILL----ARQ--VGVPNIVVFLNKADCVQDKELL---DLVEMEIRELLTEYDF 802 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e~l~~----~~~--~~ip~iIvviNK~Dl~~~~~~~---~~~~~~~~~~l~~~~~ 802 (1021)
..++++++++|+|+|+++. +....++|.. +.. -++| +++++||+|+.+++++. ..+..+..+.+...++
T Consensus 67 ~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~ 144 (331)
T 3r7w_B 67 ERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGL 144 (331)
T ss_dssp HHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSC
T ss_pred hhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCc-EEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcc
Confidence 7889999999999999987 5455554432 222 2567 89999999998643321 2233333333333222
Q ss_pred CCCceEEEEecccc
Q psy5021 803 DGENTKIVIGSALL 816 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~ 816 (1021)
...+++++.+||+.
T Consensus 145 ~~~~i~f~eTSAkd 158 (331)
T 3r7w_B 145 DGVQVSFYLTSIFD 158 (331)
T ss_dssp SCCCEEEECCCSSS
T ss_pred cccCceEEEeccCC
Confidence 22357899999985
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.6e-13 Score=134.27 Aligned_cols=119 Identities=17% Similarity=0.189 Sum_probs=72.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDtPG~ 87 (1021)
.+|+++|..|+|||||+++|......... +....+.+......+.+.. ++..+.+.+|||||+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~----------------~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG----------------MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR 66 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC---------------------------CSEEEEEEEC---------CEEEEEEECSH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC----------------CcceeccEEeEEeeeccccCCCCceEEEEEecCCC
Confidence 36999999999999999999532111000 0011111111111111110 123678999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCc-hhHHHHH-HHHhh--cCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQ-PQTETVW-FQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~-~~t~~~~-~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
.+|......+++.+|++++|+|.+++.. ......| ..+.. .+.|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 67 EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 8888777888899999999999987632 2222223 22222 4789999999999863
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=145.39 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=75.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
....+|+++|++|+|||||+++|.... ...+. ..+.|.......+.+. +..+.+||||
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~---~~~~~---------------~~~~t~~~~~~~~~~~----~~~~~l~Dt~ 222 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK---PEIAS---------------YPFTTRGINVGQFEDG----YFRYQIIDTP 222 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC---CEEEC---------------CTTCSSCEEEEEEEET----TEEEEEEECT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---CccCC---------------CCCeeeceeEEEEEec----CceEEEEeCC
Confidence 356789999999999999999995322 11110 1123333333344444 6789999999
Q ss_pred CCCCcHH--------HHHHHh-hccCeEEEEEeCCCCC--chhH-HHHHHHHhh--cCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTI--------EVERSL-RVLDGAVIIICASSGI--QPQT-ETVWFQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~--------~~~~~l-~~~D~~ilvvda~~g~--~~~t-~~~~~~~~~--~~~p~iiviNK~D~~ 142 (1021)
|+.++.. ....++ ..+|++|+|+|++++. .... ...+..+.. .++|+++|+||+|+.
T Consensus 223 G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 223 GLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred CccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 9976531 222233 4689999999988753 3333 233343332 289999999999985
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=139.20 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=80.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|++|+|||||+++|+........ ...+.|.......+.+. +..++||||||
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~-----------------~~~~~t~~~~~~~~~~~----~~~l~liDTpG 93 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-----------------PFQAEGLRPVMVSRTMG----GFTINIIDTPG 93 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCC-----------------SSCC-CCCCEEEEEEET----TEEEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccC-----------------CCCCcceeeEEEEEEEC----CeeEEEEECCC
Confidence 4679999999999999999999854321111 12344666666666777 78999999999
Q ss_pred CCCcHHHHHHHhh---------ccCeEEEEEeCCCC-CchhHHHHHHHHhhc-----CCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLR---------VLDGAVIIICASSG-IQPQTETVWFQSQKY-----KVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~---------~~D~~ilvvda~~g-~~~~t~~~~~~~~~~-----~~p~iiviNK~D~~ 142 (1021)
+.+|......+++ .+|++|+|+|.... .......+++.+... ..|+++|+||+|+.
T Consensus 94 ~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 94 LVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp SEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 9888543333332 78999999887653 444444555555432 24999999999985
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=137.05 Aligned_cols=166 Identities=12% Similarity=0.132 Sum_probs=101.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh-----
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH----- 724 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~----- 724 (1021)
+.+.++++|.+++|||||+|+|++..... ......++|.+.....+...+..+.||||||+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~ 93 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFH--------------SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEV 93 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSC--------------C-------CCSCEEEEEEETTEEEEEEECCSCC----
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCc--------------cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCC
Confidence 45788999999999999999999854211 11222356777777778888999999999994
Q ss_pred ------hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHH-----HcCCCeEEEEEeeccccchhhHHHHH---H
Q psy5021 725 ------ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLAR-----QVGVPNIVVFLNKADCVQDKELLDLV---E 790 (1021)
Q Consensus 725 ------~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~-----~~~ip~iIvviNK~Dl~~~~~~~~~~---~ 790 (1021)
+.+...+..++..+|++|+|+|++. ......+.+..+. ....| +++|+||+|+.......+.+ .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~i~~~~ 171 (239)
T 3lxx_A 94 PNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSF-MILIFTRKDDLGDTNLHDYLREAP 171 (239)
T ss_dssp -CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGG-EEEEEECGGGC------------C
T ss_pred CHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccce-EEEEEeCCccCCcccHHHHHHhch
Confidence 3455555555667899999999875 3334444444332 23346 89999999987632221111 2
Q ss_pred HHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 791 MEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 791 ~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.++.+++..+. .++++++..+.. ....++.+|++.+...+
T Consensus 172 ~~l~~l~~~~~~-----~~~~~~~~~~~~------~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 172 EDIQDLMDIFGD-----RYCALNNKATGA------EQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp HHHHHHHHHHSS-----SEEECCTTCCHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-----EEEEEECCCCcc------ccHHHHHHHHHHHHHHH
Confidence 345666666553 345555542200 01136778888776544
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=133.84 Aligned_cols=117 Identities=18% Similarity=0.161 Sum_probs=79.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+...+|+++|+.|+|||||+++|........ ....++.......+.+. +....+.+||||
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~------------------~~~t~~~~~~~~~i~~~--g~~~~~~i~Dt~ 62 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE------------------SKSTIGVEFATRSIQVD--GKTIKAQIWDTA 62 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCCSCEEEEEEEEET--TEEEEEEEEECS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCC------------------CCCccceeEEEEEEEEC--CEEEEEEEEECC
Confidence 4568899999999999999999975322111 01111222222233333 335678899999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|+..|...+...++.+|++++|+|.++.........| ..+. ..+.|+++++||+|+.
T Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp SGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 9999887778888999999999999875443332223 2232 2478999999999984
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.8e-13 Score=158.30 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=79.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeee----EEEeecccCceeEEE
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV----SIFWEVNKFKYMINI 81 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~----~~~~~~~~~~~~i~l 81 (1021)
.+..+|+++|.+|+|||||+++|....-... + ....|.++..... .+....++....+++
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~-------------~---~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i 102 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPK-------------E---SQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCC-------------C---CCccceEEEEeccccccceeecCCCceEEEEE
Confidence 3456899999999999999999973221000 0 0111222211100 011111234688999
Q ss_pred EcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhc--CCCEEEEEeCcCCCC
Q psy5021 82 IDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 82 iDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
|||||+..|.......++.+|++|+|+|++.. ......+..+... +.|+++|+||+|+..
T Consensus 103 ~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp ECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred EECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 99999999998888899999999999999865 3444455555554 499999999999864
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-11 Score=127.16 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=101.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh----
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA---- 725 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~---- 725 (1021)
+....+++|.+++|||||+++|++... ........|.|.......+ .+ .+.+|||||+.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~--------------~~~~~~~~G~~~~~~~~~~--~~-~~~l~Dt~G~~~~~~ 87 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS--------------LARTSKTPGRTQLINLFEV--AD-GKRLVDLPGYGYAEV 87 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEEEEEE--ET-TEEEEECCCCC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc--------------cccccCCCccceeeEEEEe--cC-CEEEEECcCCccccc
Confidence 346789999999999999999997431 1112234466654443333 23 67899999984
Q ss_pred ------hhHHHHHHHh---hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh
Q psy5021 726 ------DYIKNMITGA---AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL 796 (1021)
Q Consensus 726 ------~~~~~~~~~~---~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~ 796 (1021)
.|...+..++ ..+|.+++|+|++.+......+...++...++| ++++.||+|+....++ ......+..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~nK~D~~s~~~~-~~~~~~~~~~ 165 (210)
T 1pui_A 88 PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA-VLVLLTKADKLASGAR-KAQLNMVREA 165 (210)
T ss_dssp --CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCHHHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEecccCCCchhH-HHHHHHHHHH
Confidence 2333332333 468999999999987766555566667778899 7888999998763222 1112344444
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+...+. .+.++|+||+++ .+++++++.|.+.+
T Consensus 166 ~~~~~~---~~~~~~~Sal~~-----------~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 166 VLAFNG---DVQVETFSSLKK-----------QGVDKLRQKLDTWF 197 (210)
T ss_dssp HGGGCS---CEEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred HHhcCC---CCceEEEeecCC-----------CCHHHHHHHHHHHH
Confidence 444332 367899999977 37888888887644
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-13 Score=159.32 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=101.6
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeee------EEEE--eeCCeEEEEE
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTS------HVEY--ESENKHYAHV 719 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~------~~~~--~~~~~~i~li 719 (1021)
..+.+.++++|.+++|||||+++|++.... .....+.|.++... ...+ +..+..+.+|
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--------------~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 103 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD--------------PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCccceEEEEeccccccceeecCCCceEEEEEE
Confidence 345678899999999999999999974311 11122223333211 0111 1225789999
Q ss_pred ecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC--CCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 720 DCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVG--VPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 720 DtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~--ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
||||++.|......+++.+|++|+|+|++.. .....++..+...+ .| +|+|+||+|+.+..... .+++.+.+
T Consensus 104 Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v~---~~~~~~~~ 177 (535)
T 3dpu_A 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNIE---QKKINERF 177 (535)
T ss_dssp CCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCCC---HHHHHHHC
T ss_pred ECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC-EEEEEECCCcccccccC---HHHHHHHH
Confidence 9999999988888888999999999999864 44556666666655 78 89999999997532211 23445555
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
...+ .+++++||++|. |+++|++.|.+.+
T Consensus 178 ~~~~-----~~~~~vSA~~g~-----------gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 178 PAIE-----NRFHRISCKNGD-----------GVESIAKSLKSAV 206 (535)
T ss_dssp GGGT-----TCEEECCC----------------CTTHHHHHHHHH
T ss_pred HhcC-----CceEEEecCccc-----------CHHHHHHHHHHHH
Confidence 5554 468999999884 5666666665533
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-12 Score=132.06 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=78.8
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+........ ..+ ..|+... +. ...+++|||
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~----------~~~-------~~~~~~~-----~~----~~~~~l~Dt 62 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----------VSQ-------EPLSAAD-----YD----GSGVTLVDF 62 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC----------CCS-------SCEEETT-----GG----GSSCEEEEC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCee----------eec-------CceEEEE-----ee----CceEEEEEC
Confidence 456789999999999999999999754321100 000 0111111 12 678999999
Q ss_pred CCCCCcHHHHHHHhhc----cCeEEEEEeCC-C--CCchhHHHHHHHHh------hcCCCEEEEEeCcCCCCCC
Q psy5021 85 PGHVDFTIEVERSLRV----LDGAVIIICAS-S--GIQPQTETVWFQSQ------KYKVPKMIFVNKMDRIGAN 145 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~----~D~~ilvvda~-~--g~~~~t~~~~~~~~------~~~~p~iiviNK~D~~~~~ 145 (1021)
||+.+|...+..+++. +|++|+|+|++ + ........+..... ..++|+++|+||+|+....
T Consensus 63 ~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 63 PGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp CCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred CCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 9999999888888877 89999999998 3 22222222222221 2589999999999998664
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.31 E-value=7e-12 Score=141.57 Aligned_cols=155 Identities=21% Similarity=0.219 Sum_probs=101.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH-
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI- 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~- 728 (1021)
...+++++|.+|+|||||+|+|++....... ..+.|.+.....+...+..+.+|||||+.++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 229 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIAS----------------YPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEEC----------------CTTCSSCEEEEEEEETTEEEEEEECTTTSSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCC----------------CCCeeeceeEEEEEecCceEEEEeCCCccccch
Confidence 4568899999999999999999985421111 12334444455566667889999999985431
Q ss_pred -------HHHHHH-hhhCCEEEEEEECCCCC--c-HHHHHHHHHHHH-c-CCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 729 -------KNMITG-AAQMDGAILVCSAVDGP--M-PQTREHILLARQ-V-GVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 729 -------~~~~~~-~~~aD~ailVvDa~~g~--~-~qt~e~l~~~~~-~-~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
...... ...+|.+++|+|+++.. . ....+++..+.. . +.| +|+|+||+|+..... .+ +...
T Consensus 230 ~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~Dl~~~~~-~~----~~~~ 303 (357)
T 2e87_A 230 SERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKIDVADEEN-IK----RLEK 303 (357)
T ss_dssp TTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTTTCCHHH-HH----HHHH
T ss_pred hhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcccCChHH-HH----HHHH
Confidence 122222 34699999999987643 2 222344444443 2 677 999999999986322 22 2233
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++..+ .+++++||++| +|+++|+++|.+.+
T Consensus 304 ~~~~~~-----~~~~~iSA~~g-----------~gi~~l~~~i~~~l 334 (357)
T 2e87_A 304 FVKEKG-----LNPIKISALKG-----------TGIDLVKEEIIKTL 334 (357)
T ss_dssp HHHHTT-----CCCEECBTTTT-----------BTHHHHHHHHHHHH
T ss_pred HHHhcC-----CCeEEEeCCCC-----------cCHHHHHHHHHHHH
Confidence 333322 46899999988 38888888887644
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-12 Score=131.06 Aligned_cols=157 Identities=19% Similarity=0.152 Sum_probs=95.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhhh-
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHADY- 727 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~~- 727 (1021)
.+.+.++|.+++|||||+++|++....... .. ...|.+... ..+..++. .+.+|||+|.+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~------------~~-~~~g~d~~~--~~i~~~~~~~~l~~~Dt~g~~~~~ 101 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDS------------DC-EVLGEDTYE--RTLMVDGESATIILLDMWENKGEN 101 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCC------------C----CCTTEEE--EEEEETTEEEEEEEECCTTTTHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC------------cC-CccceeeEE--EEEEECCeeeEEEEeecCCCcchh
Confidence 467889999999999999999864321110 00 112333222 23344444 4678999998773
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
......+++.+|++|+|+|.++... ....+++..+.. .++| +|+|+||+|+.+...... .+...+....+
T Consensus 102 ~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~r~v~~---~e~~~~a~~~~- 176 (211)
T 2g3y_A 102 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRCREVSV---SEGRACAVVFD- 176 (211)
T ss_dssp HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT-
T ss_pred hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHhcCceEeH---HHHHHHHHHcC-
Confidence 3233334577999999999987332 222333333433 2677 999999999965221111 11222223333
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|++++++.|.+.+
T Consensus 177 ----~~~~e~SAk~g-----------~~v~elf~~l~~~i 201 (211)
T 2g3y_A 177 ----CKFIETSAAVQ-----------HNVKELFEGIVRQV 201 (211)
T ss_dssp ----CEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 57899999988 38899998887644
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=128.67 Aligned_cols=115 Identities=12% Similarity=0.134 Sum_probs=74.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
...-.+|+++|+.|+|||||+++|+.... ... .....|.|.... .+.+. + .+.++||
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~~---------------~~~~~G~~~~~~--~~~~~----~-~~~l~Dt 79 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKS-LAR---------------TSKTPGRTQLIN--LFEVA----D-GKRLVDL 79 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-----------------------------CCEE--EEEEE----T-TEEEEEC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCc-ccc---------------ccCCCccceeeE--EEEec----C-CEEEEEC
Confidence 34456899999999999999999852110 000 001223333221 22333 2 5789999
Q ss_pred CCCCCc----------HHHHHHHh---hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDF----------TIEVERSL---RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f----------~~~~~~~l---~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
||+.++ ...+..++ +.+|++++++|+..+.......+++++...++|.+++.||+|+.
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 998642 22222333 57899999999998877666667777778899999999999975
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-12 Score=129.02 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=79.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+....|+++|+.|+|||||+++|......... ...++.......+.+. +....+.+|||
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~------------------~~t~~~~~~~~~i~~~--g~~~~~~i~Dt 85 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES------------------KSTIGVEFATRSIQVD--GKTIKAQIWDT 85 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSC------------------CCCCSEEEEEEEEEET--TEEEEEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC------------------CCccceEEEEEEEEEC--CEEEEEEEEEC
Confidence 345678999999999999999999753221110 0112222222333343 33456778999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
||+..|...+...++.+|++++|+|.++....+....| ..+. ..+.|+++++||+|+.
T Consensus 86 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp CSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999988888888999999999998865332222223 2222 2468999999999984
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.3e-12 Score=141.08 Aligned_cols=124 Identities=18% Similarity=0.204 Sum_probs=64.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.-+|+|+|+.|+|||||+++|+.... . .. ...+....+..+++++.. ....+..++....+++|||||+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~-~-~~-------~~~~~~~~~~~~ti~~~~--~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDL-Y-PE-------RVIPGAAEKIERTVQIEA--STVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC------------------------CEEEEE--EEEC----CEEEEEEEEC----
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCC-C-CC-------CcccCCCcccCCceeEEE--EEEEeecCCcccceEEEEeccc
Confidence 35799999999999999999853211 1 00 011111112223333332 2222222233457999999999
Q ss_pred CCcH-------HHHH-------HHhhcc-------------CeEEEEEeC-CCCCchhHHHHHHHHhhcCCCEEEEEeCc
Q psy5021 88 VDFT-------IEVE-------RSLRVL-------------DGAVIIICA-SSGIQPQTETVWFQSQKYKVPKMIFVNKM 139 (1021)
Q Consensus 88 ~~f~-------~~~~-------~~l~~~-------------D~~ilvvda-~~g~~~~t~~~~~~~~~~~~p~iiviNK~ 139 (1021)
.++. ..+. .+++.+ |+++++|+. ..+.......+++.+ ..++|+|+|+||+
T Consensus 106 gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~ 184 (361)
T 2qag_A 106 GDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKA 184 (361)
T ss_dssp ----------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECC
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECC
Confidence 4442 2222 444443 357788876 556666665555554 4689999999999
Q ss_pred CCCC
Q psy5021 140 DRIG 143 (1021)
Q Consensus 140 D~~~ 143 (1021)
|+..
T Consensus 185 Dl~~ 188 (361)
T 2qag_A 185 DTLT 188 (361)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 9863
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=132.11 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=81.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+++|++|+|||||+++|+........ ...+.|.......+.+. ++.+++|||||
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-----------------~~~~~t~~~~~~~~~~~----~~~l~iiDTpG 96 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSIS-----------------PFQSEGPRPVMVSRSRA----GFTLNIIDTPG 96 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-----------------SSSCCCSSCEEEEEEET----TEEEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccc-----------------CCCCcceeeEEEEEeeC----CeEEEEEECCC
Confidence 4678999999999999999999843321111 01233444444445555 78999999999
Q ss_pred CCCcH---HHHHHHh------hccCeEEEEEeCCC-CCchhHHHHHHHHhhc-C----CCEEEEEeCcCCCCC---CHHH
Q psy5021 87 HVDFT---IEVERSL------RVLDGAVIIICASS-GIQPQTETVWFQSQKY-K----VPKMIFVNKMDRIGA---NYNN 148 (1021)
Q Consensus 87 ~~~f~---~~~~~~l------~~~D~~ilvvda~~-g~~~~t~~~~~~~~~~-~----~p~iiviNK~D~~~~---~~~~ 148 (1021)
+.+|. ......+ +.+|++|+|+|.+. .........++.+... + .|+++|+||+|+... ++++
T Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~ 176 (270)
T 1h65_A 97 LIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDE 176 (270)
T ss_dssp SEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHH
T ss_pred CCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHH
Confidence 98774 2222222 36999999988765 3444455565555432 2 699999999998643 3444
Q ss_pred HHH
Q psy5021 149 CII 151 (1021)
Q Consensus 149 ~~~ 151 (1021)
.++
T Consensus 177 ~~~ 179 (270)
T 1h65_A 177 FFS 179 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-12 Score=144.41 Aligned_cols=131 Identities=20% Similarity=0.156 Sum_probs=72.2
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHc---CCCcccccccCCcccc------cChH---HHhhhCceeeeeeeEEEe--
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYS---GSSHKIGEVHHGTTIT------DWMQ---QEQERGITITSASVSIFW-- 70 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~---~~~~~~g~~~~~~~~~------d~~~---~e~~rgiTi~~~~~~~~~-- 70 (1021)
..+.+.|+|+|++|+|||||+++|.... |.-...-..+.+.+.. |... .....+..+......-..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 3467899999999999999999997432 2211111112211111 1000 001112222111100000
Q ss_pred ----------ecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcC
Q psy5021 71 ----------EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMD 140 (1021)
Q Consensus 71 ----------~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D 140 (1021)
..+..++.+.||||||... .....+..+|.+|+|+|+..+...+... ....++|.++|+||+|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~D 228 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKAD 228 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCC
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCC
Confidence 0011368899999999654 2334458999999999998765443221 1123469999999999
Q ss_pred CC
Q psy5021 141 RI 142 (1021)
Q Consensus 141 ~~ 142 (1021)
+.
T Consensus 229 l~ 230 (355)
T 3p32_A 229 GE 230 (355)
T ss_dssp GG
T ss_pred Cc
Confidence 85
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.4e-12 Score=152.27 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=55.5
Q ss_pred eeEEEEcCCCCCC---cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhhcCCCEEEEEeCcCCC
Q psy5021 77 YMINIIDTPGHVD---FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 77 ~~i~liDtPG~~~---f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~~~~p~iiviNK~D~~ 142 (1021)
..++||||||+.+ +...+..+++.+|++|+|+|++.+........|. .+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999754 4566778899999999999999988887777775 4566789999999999985
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.3e-12 Score=138.50 Aligned_cols=164 Identities=15% Similarity=0.075 Sum_probs=95.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccc-cc----cccccc----------c------CCchh----h------hh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GE----VRAFDT----------I------DNAPE----E------KE 697 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~----~~~~~~----------~------d~~~~----e------~~ 697 (1021)
.....++++|.+++|||||+|+|++....... +. +..... . ..... + +.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 44568899999999999999999986532100 00 000000 0 00000 0 11
Q ss_pred ----cCceEeeeEEEEeeC-CeEEEEEecCChh-------------hhHHHHHHHhhhCCEEE-EEEECCCCCcHHHH-H
Q psy5021 698 ----RGITISTSHVEYESE-NKHYAHVDCPGHA-------------DYIKNMITGAAQMDGAI-LVCSAVDGPMPQTR-E 757 (1021)
Q Consensus 698 ----~G~Ti~~~~~~~~~~-~~~i~liDtpG~~-------------~~~~~~~~~~~~aD~ai-lVvDa~~g~~~qt~-e 757 (1021)
.|++.......+... ...++||||||+. .+...+..+++.+|.++ +|+|++.+...+.. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 233332222333333 4689999999963 45566777888888777 68999987766654 4
Q ss_pred HHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccc
Q psy5021 758 HILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 758 ~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~ 818 (1021)
.+..+...+.| +++|+||+|+.+.... ..+.+...+..+ .....+++++||++|.
T Consensus 184 ~~~~~~~~~~~-~i~V~NK~Dl~~~~~~---~~~~~~~~~~~~--~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 184 IAKEVDPQGQR-TIGVITKLDLMDEGTD---ARDVLENKLLPL--RRGYIGVVNRSQKDID 238 (299)
T ss_dssp HHHHHCTTCSS-EEEEEECGGGSCTTCC---CHHHHTTCSSCC--TTCEEECCCCCCBCTT
T ss_pred HHHHhCCCCCe-EEEEEEccccCCCCch---HHHHHhCCcCcC--CCCcEEEECCChhhcc
Confidence 55555556788 8999999999863221 111222211111 1112578899999874
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-12 Score=133.96 Aligned_cols=143 Identities=19% Similarity=0.213 Sum_probs=86.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+...+.++|.+++|||||+++|++....... .....+++. ......+.+|||||+++|..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~-------------~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~ 70 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-------------VSQEPLSAA-------DYDGSGVTLVDFPGHVKLRY 70 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBC-------------CCSSCEEET-------TGGGSSCEEEECCCCGGGTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCee-------------eecCceEEE-------EeeCceEEEEECCCcHHHHH
Confidence 4567889999999999999999974311100 000011111 11456789999999999988
Q ss_pred HHHHHhhh----CCEEEEEEECC-CC-CcHHHHHHHHHHHH-------cCCCeEEEEEeeccccchh---hHHHHHHHHH
Q psy5021 730 NMITGAAQ----MDGAILVCSAV-DG-PMPQTREHILLARQ-------VGVPNIVVFLNKADCVQDK---ELLDLVEMEI 793 (1021)
Q Consensus 730 ~~~~~~~~----aD~ailVvDa~-~g-~~~qt~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~---~~~~~~~~~~ 793 (1021)
.+..+++. +|++|+|+|++ +. .+....+++..+.. .++| +++|+||+|+.... ...+.+.+++
T Consensus 71 ~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~l~~~~ 149 (218)
T 1nrj_B 71 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTARPPSKIKDALESEI 149 (218)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHhcccCCHHHHHHHHHHHH
Confidence 88888877 89999999998 32 23334444433322 3677 99999999997632 2223333444
Q ss_pred HHhhhccccCCCceEEEEecccccc
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~ 818 (1021)
..+....+ .+++++||++|.
T Consensus 150 ~~~~~~~~-----~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 150 QKVIERRK-----KSLNEVERKINE 169 (218)
T ss_dssp HHHHHHHH-----HHHHC-------
T ss_pred HHHHHHHh-----cccccccccccc
Confidence 44443333 457889999764
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=5e-12 Score=140.49 Aligned_cols=118 Identities=9% Similarity=-0.014 Sum_probs=73.9
Q ss_pred CCeEEEEEecCChhh-------------hHHHHHHHhhhCCEEEEEEEC-CCCCcHHH-HHHHHHHHHcCCCeEEEEEee
Q psy5021 712 ENKHYAHVDCPGHAD-------------YIKNMITGAAQMDGAILVCSA-VDGPMPQT-REHILLARQVGVPNIVVFLNK 776 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~-------------~~~~~~~~~~~aD~ailVvDa-~~g~~~qt-~e~l~~~~~~~ip~iIvviNK 776 (1021)
.+..+.||||||+.+ +...+..++..+|++++|+|+ +.+...+. ...+..+...+.| +++|+||
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~-~i~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKR-TIGVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSS-EEEEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCc-EEEEEcC
Confidence 346899999999753 566777888999999999997 55544333 3556666666888 8999999
Q ss_pred ccccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 777 ADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 777 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+|+.+.... ..+.+...+..+ ...++++|+.++.+.. ...++.++++.+.++++
T Consensus 208 ~Dl~~~~~~---~~~~~~~~~~~~-----~~~~~~v~~~sa~~~~-----~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 208 LDLMDKGTD---AMEVLTGRVIPL-----TLGFIGVINRSQEDII-----AKKSIRESLKSEILYFK 261 (315)
T ss_dssp TTSSCSSCC---CHHHHTTSSSCC-----TTCEEECCCCCHHHHS-----SSCCHHHHHHHHHHHHH
T ss_pred cccCCcchH---HHHHHhCCCccC-----CCCeEEEecCChhhhc-----cCCCHHHHHHHHHHHHh
Confidence 999863221 111222111111 1346677776654311 11377778877766554
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.1e-12 Score=128.33 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=81.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|......... .. ...+++. .+. ...+.+||||
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~----------~~-----~~~~~~~-------~~~----~~~~~l~Dt~ 99 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----------VS-----QEPLSAA-------DYD----GSGVTLVDFP 99 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------CCC----CTTCSEEEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccc----------cc-----CCCceee-------eec----CCeEEEEECC
Confidence 44578999999999999999999753321100 00 0111111 113 6788999999
Q ss_pred CCCCcHHHHHHHhhc----cCeEEEEEeCCCCCch--hHHHHHHHHh-------hcCCCEEEEEeCcCCCCCC-HHHHHH
Q psy5021 86 GHVDFTIEVERSLRV----LDGAVIIICASSGIQP--QTETVWFQSQ-------KYKVPKMIFVNKMDRIGAN-YNNCII 151 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~----~D~~ilvvda~~g~~~--~t~~~~~~~~-------~~~~p~iiviNK~D~~~~~-~~~~~~ 151 (1021)
|+.+|...+..+++. +|++|+|+|++..... .....+.... ..++|+++|+||+|+.... ..+..+
T Consensus 100 G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp TCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred CCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence 999997777777765 8999999999822211 1112222221 1489999999999997643 566666
Q ss_pred HHHHHh
Q psy5021 152 DIKKKF 157 (1021)
Q Consensus 152 ~i~~~l 157 (1021)
.+.+.+
T Consensus 180 ~l~~~l 185 (193)
T 2ged_A 180 ALESEI 185 (193)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-12 Score=132.44 Aligned_cols=128 Identities=18% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc--cCCcccccChHHHhhhCceeeeeeeEEEeec----------c
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTTITDWMQQEQERGITITSASVSIFWEV----------N 73 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~--~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------~ 73 (1021)
.++++|+++|++|+|||||+++|+.......+.+.+ +.+. ..|....+ ..|+++..-.....+.. .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~-~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS-KADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC-HHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC-chhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHh
Confidence 467899999999999999999998764322222222 1121 12221111 12443211100000000 1
Q ss_pred cCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 74 KFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 74 ~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
..++.+.+|||||+.+-... .-...+.+++|+|+..+... .|......+.|.++|+||+|+.
T Consensus 106 ~~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred cCCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 12578999999995221100 01246889999999887532 3333444578999999999974
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.1e-12 Score=128.39 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=99.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~~~ 728 (1021)
.+..+++|..++|||||+++|++..... ......|.+ .....+..++. .+.+|||||+++|.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--------------~~~~t~~~~--~~~~~i~~~g~~~~~~i~Dt~g~~~~~ 68 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESKSTIGVE--FATRSIQVDGKTIKAQIWDTAGQERYR 68 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----------------CCCSCE--EEEEEEEETTEEEEEEEEECSSGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCcccee--EEEEEEEECCEEEEEEEEECCCchhhh
Confidence 3578999999999999999999743111 111222333 33333444554 56789999999987
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..++..+|++++|+|+++....+ ...++..+.. .+.| +++++||+|+.+...... .+...++...+
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~~---~~a~~l~~~~~--- 141 (199)
T 2f9l_A 69 RITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPT---DEARAFAEKNN--- 141 (199)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCH---HHHHHHHHHTT---
T ss_pred hhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCcCH---HHHHHHHHHcC---
Confidence 77777788999999999998743322 2233333333 2455 899999999875221111 12333443333
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+.++.+||+++. +++++++.|.+.
T Consensus 142 --~~~~d~Sal~~~-----------~i~~l~~~l~~~ 165 (199)
T 2f9l_A 142 --LSFIETSALDST-----------NVEEAFKNILTE 165 (199)
T ss_dssp --CEEEECCTTTCT-----------THHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC-----------CHHHHHHHHHHH
Confidence 578889999773 677777766543
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=148.58 Aligned_cols=128 Identities=21% Similarity=0.255 Sum_probs=78.5
Q ss_pred eEEEEEecCChhh---hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEEEeeccccchh----h-
Q psy5021 714 KHYAHVDCPGHAD---YIKNMITGAAQMDGAILVCSAVDGPMPQTREHIL-LARQVGVPNIVVFLNKADCVQDK----E- 784 (1021)
Q Consensus 714 ~~i~liDtpG~~~---~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~-~~~~~~ip~iIvviNK~Dl~~~~----~- 784 (1021)
..++||||||+.+ ....+..++..+|++|+|+|++++......+.|. .+...+.| +++|+||+|+.... +
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGGCSSTTC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccccccccChhh
Confidence 4689999999766 4556677889999999999999887777766664 44556778 99999999987532 1
Q ss_pred --HHHHHHHHHH----Hhhhcc----ccCCCceEEEEecccccccC---CCCCccCcchHHHHHHhhhccC
Q psy5021 785 --LLDLVEMEIR----ELLTEY----DFDGENTKIVIGSALLALEG---KDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 785 --~~~~~~~~~~----~~l~~~----~~~~~~~~ii~iSa~~~~~~---~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..+.....+. ..+... ++.....+++++||+.+... .+.......|++.|++.|.+.+
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 1222222222 222211 11122346899999933211 0000112246777777765533
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-11 Score=131.33 Aligned_cols=112 Identities=11% Similarity=0.146 Sum_probs=76.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|.++|..|+|||||+.++... .... ....-+.|+......+ + ....+++|||||+.+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~--~~~~---------------~~~~~~~Tig~~~~~v--~---~~v~LqIWDTAGQEr 58 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN--MQPL---------------DTLYLESTSNPSLEHF--S---TLIDLAVMELPGQLN 58 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC--CCSG---------------GGTTCCCCCSCCCEEE--C---SSSCEEEEECCSCSS
T ss_pred CEEEECCCCCCHHHHHHHHHcC--CCCC---------------ccceecCeeeeeeEEE--c---cEEEEEEEECCCchh
Confidence 3789999999999999876421 1000 0011234554443332 2 257899999999999
Q ss_pred cHH---HHHHHhhccCeEEEEEeCCCCCchhHHHHHHH----Hh--hcCCCEEEEEeCcCCCCC
Q psy5021 90 FTI---EVERSLRVLDGAVIIICASSGIQPQTETVWFQ----SQ--KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~---~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~----~~--~~~~p~iiviNK~D~~~~ 144 (1021)
|.. .+..+++.++++|+|+|+++. .......|+. +. ..++|+++|+||+|+...
T Consensus 59 f~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 59 YFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp SCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 964 467889999999999999987 3344444432 21 247999999999999644
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-12 Score=145.55 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=46.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEee------------------
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWE------------------ 71 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~------------------ 71 (1021)
+|+|+|++|+|||||+++|+... .... ...+.|+........+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~-----------------~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~ 63 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIA-----------------NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-Cccc-----------------CCCCcccCCceEEEeeccCCchHHhhhhccccccc
Confidence 69999999999999999997433 1110 11223333332221111
Q ss_pred --cccCceeEEEEcCCCCCCcHH-------HHHHHhhccCeEEEEEeCCCC
Q psy5021 72 --VNKFKYMINIIDTPGHVDFTI-------EVERSLRVLDGAVIIICASSG 113 (1021)
Q Consensus 72 --~~~~~~~i~liDtPG~~~f~~-------~~~~~l~~~D~~ilvvda~~g 113 (1021)
.+.....++||||||+.++.. ....+++.+|++++|+|++++
T Consensus 64 ~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 64 YRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 001136799999999875422 122456899999999999875
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=126.62 Aligned_cols=157 Identities=19% Similarity=0.170 Sum_probs=93.4
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhh-h
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHAD-Y 727 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~-~ 727 (1021)
.+.+.++|.+++|||||+++|++...... ... ...|.+.. ...+..++. .+.+|||+|... +
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~------------~~~-~~~~~~~~--~~~~~~~~~~~~l~~~Dt~~~~~~~ 70 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMD------------SDX-EVLGEDTY--ERTLMVDGESATIILLDMWENKGEN 70 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC-----------------GGGCTTEE--EEEEEETTEEEEEEEECCCCC----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcC------------ccc-cccceeEE--EEEEEECCeEEEEEEEEeccCcchh
Confidence 35678899999999999999986321110 000 11233322 223344454 457899999765 2
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
......+++.+|++++|+|.++....+ ..+++..+... ++| +|+|.||+|+...... . ..+...+....+
T Consensus 71 ~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~r~v-~--~~~~~~~a~~~~- 145 (192)
T 2cjw_A 71 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRXREV-S--VSEGRAXAVVFD- 145 (192)
T ss_dssp CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECTTCGGGCCS-C--HHHHHHHHHHTT-
T ss_pred hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe-EEEEEechhhhccccc-c--HHHHHHHHHHhC-
Confidence 222344567899999999998743322 23333333332 677 9999999998652211 1 011122222222
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.|.+.+
T Consensus 146 ----~~~~e~SA~~g~-----------~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 146 ----XKFIETSAAVQH-----------NVKELFEGIVRQV 170 (192)
T ss_dssp ----CEEEECBTTTTB-----------SHHHHHHHHHHHH
T ss_pred ----CceEEeccccCC-----------CHHHHHHHHHHHH
Confidence 578999999873 8888888886643
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=145.01 Aligned_cols=138 Identities=15% Similarity=0.108 Sum_probs=88.8
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCccc------ccC-----------hHHHhhhCce-----e
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTI------TDW-----------MQQEQERGIT-----I 61 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~------~d~-----------~~~e~~rgiT-----i 61 (1021)
+.+...+|+|+|+.|+|||||+|+|+.........+. ..+++. .+. .+.+.-+++. .
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~-~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP-EPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS-SCCCCSEEEEECCSSSEEECCC------------------CC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCC-CCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 3456789999999999999999999865432101110 001000 000 0000000000 0
Q ss_pred eeeeeEEEeecccCceeEEEEcCCCCCC-----------cHHHHHHHhhccCeEEEEEeCCC-CCchhHHHHHHHHhhcC
Q psy5021 62 TSASVSIFWEVNKFKYMINIIDTPGHVD-----------FTIEVERSLRVLDGAVIIICASS-GIQPQTETVWFQSQKYK 129 (1021)
Q Consensus 62 ~~~~~~~~~~~~~~~~~i~liDtPG~~~-----------f~~~~~~~l~~~D~~ilvvda~~-g~~~~t~~~~~~~~~~~ 129 (1021)
......+.+.. ..-..++||||||+.+ |...+..++..+|++|+|+|++. +...+...+++.+...+
T Consensus 140 ~~~~~~~~~~~-~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~ 218 (550)
T 2qpt_A 140 LNRFMCAQLPN-QVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHE 218 (550)
T ss_dssp CTTEEEEECCC-HHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCG
T ss_pred cccceEEeccc-cccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcC
Confidence 01111122220 0004699999999976 77888889999999999999988 57888888888888888
Q ss_pred CCEEEEEeCcCCCC
Q psy5021 130 VPKMIFVNKMDRIG 143 (1021)
Q Consensus 130 ~p~iiviNK~D~~~ 143 (1021)
.|+++|+||+|+..
T Consensus 219 ~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 219 DKIRVVLNKADMVE 232 (550)
T ss_dssp GGEEEEEECGGGSC
T ss_pred CCEEEEEECCCccC
Confidence 99999999999974
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=139.24 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=81.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc--CC-------------------cccccCh--HHHh------h-
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH--HG-------------------TTITDWM--QQEQ------E- 56 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~--~~-------------------~~~~d~~--~~e~------~- 56 (1021)
....|+++|.+++|||||+|+|+...-.-...|-+. ++ ..++++. +.+. -
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 356899999999999999999975432111000000 00 0112221 1111 1
Q ss_pred ---hCceeeeeeeEEEeecccCceeEEEEcCCCCCC-------------cHHHHHHHhhccC-eEEEEEeCCCCCchhHH
Q psy5021 57 ---RGITITSASVSIFWEVNKFKYMINIIDTPGHVD-------------FTIEVERSLRVLD-GAVIIICASSGIQPQTE 119 (1021)
Q Consensus 57 ---rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~-------------f~~~~~~~l~~~D-~~ilvvda~~g~~~~t~ 119 (1021)
.|+......+.+... ....++||||||..+ +...+..+++.++ .+++|+|+..+...+..
T Consensus 110 g~~~gi~~~~~~~~i~~~---~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSP---HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEET---TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH
T ss_pred ccCCCcccCceEEEEecC---CCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH
Confidence 344333322333222 146899999999743 3445566665554 55667888877766655
Q ss_pred -HHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 120 -TVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 120 -~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
.+++.+...+.|+++|+||+|+..
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSC
T ss_pred HHHHHHhCcCCCceEEEeccccccC
Confidence 377777778999999999999864
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=131.89 Aligned_cols=118 Identities=14% Similarity=0.025 Sum_probs=81.4
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.++++|++++|||||+|+|++..... .....+.|.......+..++..++||||||+.+|.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR---------------VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC---------------CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc---------------cCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 356788999999999999999999843211 11234556666677778889999999999997763
Q ss_pred H-------HHHHHh--hhCCEEEEEEECCCC-CcHHHHHHHHHHHHc-C---CCeEEEEEeeccccc
Q psy5021 729 K-------NMITGA--AQMDGAILVCSAVDG-PMPQTREHILLARQV-G---VPNIVVFLNKADCVQ 781 (1021)
Q Consensus 729 ~-------~~~~~~--~~aD~ailVvDa~~g-~~~qt~e~l~~~~~~-~---ip~iIvviNK~Dl~~ 781 (1021)
. .....+ ..+|++++|+|.+.. ......+.+..+... + ..++++|+||+|+..
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2 222222 278999999987753 333445566555543 3 123899999999863
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.4e-12 Score=134.90 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=29.7
Q ss_pred ccCeEEEEEeCCCC--CchhHHHHH-HHH----hhcCCCEEEEEeCcCCC
Q psy5021 100 VLDGAVIIICASSG--IQPQTETVW-FQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 100 ~~D~~ilvvda~~g--~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~ 142 (1021)
.+|++|+|+|+++. ........| ..+ ...++|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 69999999999885 333332222 222 23579999999999984
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-11 Score=138.21 Aligned_cols=170 Identities=25% Similarity=0.213 Sum_probs=86.4
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCCh----
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGH---- 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~---- 724 (1021)
.++++++|.+++|||||+++|++........ ......+...+++++.....+...+. .+++|||||+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~-------~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~ 109 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERV-------IPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAI 109 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC----CEEEEEEEEC--------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCc-------ccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccC
Confidence 4677999999999999999987642211110 01111122234444443333444443 6899999999
Q ss_pred ---hhhHHHHH-------HHhhh-------------CCEEEEEEEC-CCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 725 ---ADYIKNMI-------TGAAQ-------------MDGAILVCSA-VDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 725 ---~~~~~~~~-------~~~~~-------------aD~ailVvDa-~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
+.|...+. .+++. +|+++++|+. .++......+.+..+ ..++| +|+|+||+|+.
T Consensus 110 ~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~p-iIlV~NK~Dl~ 187 (361)
T 2qag_A 110 NCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVN-IVPVIAKADTL 187 (361)
T ss_dssp ------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SC-EEEEEECCSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCC-EEEEEECCCCC
Confidence 44422222 33332 2578888876 445555554554443 25677 99999999998
Q ss_pred chhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 781 QDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
...+ ....+.++.++++..+ ++++++||+++.+ ...+..+++.|.+.+|
T Consensus 188 ~~~e-v~~~k~~i~~~~~~~~-----i~~~~~Sa~~~~~--------~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 188 TLKE-RERLKKRILDEIEEHN-----IKIYHLPDAESDE--------DEDFKEQTRLLKASIP 236 (361)
T ss_dssp CHHH-HHHHHHHHHHHTTCC------CCSCCCC-----------------CHHHHHHHHHTCS
T ss_pred CHHH-HHHHHHHHHHHHHHCC-----CCEEeCCCcCCCc--------chhHHHHHHHHHhcCC
Confidence 6332 3334456666666554 4689999998742 1245567777766554
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.8e-11 Score=129.29 Aligned_cols=116 Identities=13% Similarity=-0.015 Sum_probs=80.4
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH-
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI- 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~- 728 (1021)
+.+++.++|.+++|||||+|+|++..... .....+.|.+.....++..+..++||||||+.++.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~ 102 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVS---------------ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY 102 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSC---------------CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc---------------ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc
Confidence 35678899999999999999999754211 11123455555566677788899999999986652
Q ss_pred ------HHHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCeEEEEEeeccccc
Q psy5021 729 ------KNMITGA--AQMDGAILVCSAVD-GPMPQTREHILLARQV-G----VPNIVVFLNKADCVQ 781 (1021)
Q Consensus 729 ------~~~~~~~--~~aD~ailVvDa~~-g~~~qt~e~l~~~~~~-~----ip~iIvviNK~Dl~~ 781 (1021)
..+..++ ..+|++|+|+|++. .......+++..+... + .| +|+|+||+|+.+
T Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-iivV~nK~Dl~~ 168 (270)
T 1h65_A 103 INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK-AIVALTHAQFSP 168 (270)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEECCSCCC
T ss_pred chHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccC-EEEEEECcccCC
Confidence 2222222 36899999998865 3334455666655443 4 35 999999999875
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-11 Score=139.17 Aligned_cols=82 Identities=22% Similarity=0.135 Sum_probs=45.1
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEE--Ee-------------------e
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE--YE-------------------S 711 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~--~~-------------------~ 711 (1021)
.+|++|.+|+|||||+|+|++......+. .+.|++..... +. .
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~----------------p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~ 65 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANY----------------PFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR 65 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCC----------------CCcccCCceEEEeeccCCchHHhhhhccccccccc
Confidence 57899999999999999999854211111 12232222211 10 1
Q ss_pred C---CeEEEEEecCChhhhH-------HHHHHHhhhCCEEEEEEECCCC
Q psy5021 712 E---NKHYAHVDCPGHADYI-------KNMITGAAQMDGAILVCSAVDG 750 (1021)
Q Consensus 712 ~---~~~i~liDtpG~~~~~-------~~~~~~~~~aD~ailVvDa~~g 750 (1021)
+ ...+.||||||+.+.. ...+.+++.+|++++|+|++++
T Consensus 66 ~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 66 NGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp TTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 1 2468999999986531 1122345889999999999875
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-11 Score=144.22 Aligned_cols=134 Identities=15% Similarity=0.199 Sum_probs=84.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc---------------------cCCcccccChHH--H------h--
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV---------------------HHGTTITDWMQQ--E------Q-- 55 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~---------------------~~~~~~~d~~~~--e------~-- 55 (1021)
....|+++|+.++|||||+|+|+...-.....|-. ..+..+.|+.+. + .
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45789999999999999999998533210000000 001111222110 0 1
Q ss_pred --hhCceeeeeeeEEEeecccCceeEEEEcCCCCCC-------------cHHHHHHHh-hccCeEEEEEeCCCCCchhHH
Q psy5021 56 --ERGITITSASVSIFWEVNKFKYMINIIDTPGHVD-------------FTIEVERSL-RVLDGAVIIICASSGIQPQTE 119 (1021)
Q Consensus 56 --~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~-------------f~~~~~~~l-~~~D~~ilvvda~~g~~~~t~ 119 (1021)
..|++-......+.+. ....+.|+||||... +...+..++ ..+|.+++|+|++.+...+..
T Consensus 130 g~~~~is~~~i~l~I~~P---~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSP---HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp CSTTCCCSCCEEEEEEET---TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred CCCCcccccceEEEEecC---CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 1233332222333333 145799999999754 223344444 478999999999998877776
Q ss_pred -HHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 120 -TVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 120 -~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
.+++.+...+.|+++|+||+|+..
T Consensus 207 l~ll~~L~~~g~pvIlVlNKiDlv~ 231 (772)
T 3zvr_A 207 LKIAKEVDPQGQRTIGVITKLDLMD 231 (772)
T ss_dssp HHHHHHHCTTCSSEEEEEECTTSSC
T ss_pred HHHHHHHHhcCCCEEEEEeCcccCC
Confidence 788888888999999999999864
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=8.8e-11 Score=133.58 Aligned_cols=115 Identities=16% Similarity=0.226 Sum_probs=72.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
...|+|+|++|||||||+++|..... . + .++ ...|+.+....+.+.. ...++++||||+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~---~---i------~~~------~ftTl~p~~G~V~~~~---~~~~~l~DtpGl 215 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHP---K---I------APY------PFTTLSPNLGVVEVSE---EERFTLADIPGI 215 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCC---E---E------CCC------TTCSSCCEEEEEECSS---SCEEEEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc---c---c------cCc------ccceecceeeEEEecC---cceEEEEecccc
Confidence 34589999999999999999953211 1 1 111 1223444444445541 267999999998
Q ss_pred CC-------cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 88 VD-------FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~-------f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
.+ +.....+.+..+|.++.++|++.....+....++++.. .+.|.++++||+|+..
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 54 23344556677999999999972122222222333322 3689999999999863
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.6e-11 Score=120.61 Aligned_cols=154 Identities=17% Similarity=0.139 Sum_probs=99.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeE--EEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH--YAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~--i~liDtpG~~~~~ 728 (1021)
.+..+++|.+++|||||+++|++..... ... ..++.+.....+..++.. +.+|||||+++|.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--------------~~~--~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~ 92 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESK--STIGVEFATRSIQVDGKTIKAQIWDTAGLERYR 92 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC--------------SCC--CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCC--CccceEEEEEEEEECCEEEEEEEEECCCCcchh
Confidence 4678999999999999999999743111 111 122333333445555554 4579999999988
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..++..+|++++|+|.++.... ....++..+.. .+.| +++++||+|+.+...... .+...++...+
T Consensus 93 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~~---~~a~~l~~~~~--- 165 (191)
T 1oix_A 93 AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPT---DEARAFAEKNG--- 165 (191)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCH---HHHHHHHHHTT---
T ss_pred hhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccCH---HHHHHHHHHcC---
Confidence 7777788899999999998864322 22223333333 2455 899999999865221111 12233333332
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+.++.+||+++ .+++++++.|.+
T Consensus 166 --~~~ld~Sald~-----------~~v~~l~~~l~~ 188 (191)
T 1oix_A 166 --LSFIETSALDS-----------TNVEAAFQTILT 188 (191)
T ss_dssp --CEEEECCTTTC-----------TTHHHHHHHHHH
T ss_pred --CEEEEEeCCCC-----------CCHHHHHHHHHH
Confidence 57888999977 378888888764
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-11 Score=125.82 Aligned_cols=111 Identities=21% Similarity=0.227 Sum_probs=71.4
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+...+.++|.+++|||||+++|++..... .......+++.+ ..+..+.+|||||+.+|..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~-------------~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~~ 106 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP-------------TVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLRY 106 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------------C-------CCCTTCSEEEETTCCBSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc-------------ccccCCCceeee-------ecCCeEEEEECCCCchHHH
Confidence 34678899999999999999999743111 000011122221 2456789999999998866
Q ss_pred HHHHHhhh----CCEEEEEEECC-CCC-cHHHHHHHHHHHH-------cCCCeEEEEEeeccccc
Q psy5021 730 NMITGAAQ----MDGAILVCSAV-DGP-MPQTREHILLARQ-------VGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 730 ~~~~~~~~----aD~ailVvDa~-~g~-~~qt~e~l~~~~~-------~~ip~iIvviNK~Dl~~ 781 (1021)
.+..++.. +|++|+|+|++ +.. +....+++..+.. .++| +++|+||+|+.+
T Consensus 107 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 170 (193)
T 2ged_A 107 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFT 170 (193)
T ss_dssp CHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTT
T ss_pred HHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchHhcC
Confidence 66666655 89999999998 321 1222233322221 2778 999999999976
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-11 Score=131.74 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=56.0
Q ss_pred hCCEEEEEEECCCC---CcHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 737 QMDGAILVCSAVDG---PMPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 737 ~aD~ailVvDa~~g---~~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
+||++|+|+|+++. .+.....++..+.. .++| +|+|+||+|+.+... . ++...+.+... .+++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~-v----~~~~~~~~~~~----~~~~ 231 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGVERY-I----RDAHTFALSKK----NLQV 231 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBCHHH-H----HHHHHHHHTSS----SCCE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccccHH-H----HHHHHHHHhcC----CCeE
Confidence 69999999999885 33333444444332 3677 999999999975321 1 23444443321 2578
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++||++|. |+++++++|.+.
T Consensus 232 ~e~SAk~g~-----------gv~elf~~l~~~ 252 (255)
T 3c5h_A 232 VETSARSNV-----------NVDLAFSTLVQL 252 (255)
T ss_dssp EECBTTTTB-----------SHHHHHHHHHHH
T ss_pred EEEECCCCC-----------CHHHHHHHHHHH
Confidence 999999873 889999888653
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-10 Score=129.66 Aligned_cols=165 Identities=14% Similarity=0.053 Sum_probs=92.1
Q ss_pred ccccceeeeeeeeeccchhhhhhhcccccccc-ccc----ccccc----------c--------cCCc--hhh------h
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIY-GGE----VRAFD----------T--------IDNA--PEE------K 696 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~-~~~----~~~~~----------~--------~d~~--~~e------~ 696 (1021)
.+....++++|.+++|||||+|+|++...... .+. +.... + .+.. ..+ +
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 45567889999999999999999998543210 000 00000 0 0100 000 1
Q ss_pred h----cCceEeeeEEEEeeC-CeEEEEEecCChh-------------hhHHHHHHHhhhC-CEEEEEEECCCCCcHHHH-
Q psy5021 697 E----RGITISTSHVEYESE-NKHYAHVDCPGHA-------------DYIKNMITGAAQM-DGAILVCSAVDGPMPQTR- 756 (1021)
Q Consensus 697 ~----~G~Ti~~~~~~~~~~-~~~i~liDtpG~~-------------~~~~~~~~~~~~a-D~ailVvDa~~g~~~qt~- 756 (1021)
. .|+........+... ...++||||||.. .+...+..++..+ +++++|+|++.+...+..
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 1 344333333333333 4789999999953 3445566666655 456667788776655544
Q ss_pred HHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccc
Q psy5021 757 EHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 757 e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~ 818 (1021)
+.+..+...+.| +|+|+||+|+.+...... ..+.... ..+.....+++++||+++.
T Consensus 188 ~i~~~~~~~~~~-~i~V~NK~Dl~~~~~~~~---~~~~~~~--~~l~~~~~~v~~~SA~~~~ 243 (353)
T 2x2e_A 188 KVAKEVDPQGQR-TIGVITKLDLMDEGTDAR---DVLENKL--LPLRRGYIGVVNRSQKDID 243 (353)
T ss_dssp HHHHHHCTTCTT-EEEEEECGGGSCTTCCCH---HHHTTCS--SCCTTCEEECCCCCHHHHH
T ss_pred HHHHHhCcCCCc-eEEEeccccccCcchhHH---HHHhCCc--ccccCCceEEEeCCccccc
Confidence 245555556788 899999999986322111 1111111 1111112467889999874
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-10 Score=127.15 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=95.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhh----
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHAD---- 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~---- 726 (1021)
..+|++|++++|||||+++|++....+...++ .|.......+..++ ..++++|+||+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~f----------------tTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~ 221 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPF----------------TTLSPNLGVVEVSEEERFTLADIPGIIEGASE 221 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTT----------------CSSCCEEEEEECSSSCEEEEEECCCCCCCGGG
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCccc----------------ceecceeeEEEecCcceEEEEeccccccchhh
Confidence 35789999999999999999986433222211 12233333344444 7899999999743
Q ss_pred ---hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHH----HHHHHH-cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 727 ---YIKNMITGAAQMDGAILVCSAVDGPMPQTREH----ILLARQ-VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 727 ---~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~----l~~~~~-~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
+.......+..+|.+++|+|+++....+.... ..++.. ...| .|+++||+|+... ... .++.+.++
T Consensus 222 ~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P-~ILVlNKlDl~~~-~~~----~~l~~~l~ 295 (416)
T 1udx_A 222 GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRP-SLVALNKVDLLEE-EAV----KALADALA 295 (416)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSC-EEEEEECCTTSCH-HHH----HHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCC-EEEEEECCChhhH-HHH----HHHHHHHH
Confidence 12233444677999999999972222222212 222221 3567 6777899998763 222 33334443
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
..+ .+++++||+++ +++++|++.|.+.+.
T Consensus 296 ~~g-----~~vi~iSA~~g-----------~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 296 REG-----LAVLPVSALTG-----------AGLPALKEALHALVR 324 (416)
T ss_dssp TTT-----SCEEECCTTTC-----------TTHHHHHHHHHHHHH
T ss_pred hcC-----CeEEEEECCCc-----------cCHHHHHHHHHHHHH
Confidence 333 46899999987 388888888876553
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.9e-10 Score=134.76 Aligned_cols=131 Identities=21% Similarity=0.155 Sum_probs=84.7
Q ss_pred cceeeeeeeeeccchhhhhhhcccccc---ccccccccc--cccCCchhhhhcCceEe------------------eeEE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSE---IYGGEVRAF--DTIDNAPEEKERGITIS------------------TSHV 707 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~---~~~~~~~~~--~~~d~~~~e~~~G~Ti~------------------~~~~ 707 (1021)
...+.++|.+++|||||+|+|++.... ....+.... ........+...|.+.. ....
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 467899999999999999999986532 111111000 00000000000111100 0001
Q ss_pred EEeeCC---eEEEEEecCChhh-----------hHHHHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEE
Q psy5021 708 EYESEN---KHYAHVDCPGHAD-----------YIKNMITGAAQMDGAILVCSAVD-GPMPQTREHILLARQVGVPNIVV 772 (1021)
Q Consensus 708 ~~~~~~---~~i~liDtpG~~~-----------~~~~~~~~~~~aD~ailVvDa~~-g~~~qt~e~l~~~~~~~ip~iIv 772 (1021)
.+...+ ..+.||||||+.+ |...+..++..+|++|+|+|+++ +...+..+++..+...+.| +++
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vil 223 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRV 223 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEE
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEE
Confidence 122222 4689999999875 66777888899999999999988 5677888888877777778 899
Q ss_pred EEeeccccch
Q psy5021 773 FLNKADCVQD 782 (1021)
Q Consensus 773 viNK~Dl~~~ 782 (1021)
|+||+|+...
T Consensus 224 VlNK~Dl~~~ 233 (550)
T 2qpt_A 224 VLNKADMVET 233 (550)
T ss_dssp EEECGGGSCH
T ss_pred EEECCCccCH
Confidence 9999999863
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.2e-10 Score=124.81 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=85.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc------------------------CCcccccChHHHh------h
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH------------------------HGTTITDWMQQEQ------E 56 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~------------------------~~~~~~d~~~~e~------~ 56 (1021)
.+..|+++|+.++|||||+++|+...-.....|.+. .+..+.|+..... .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 467899999999999999999985321111111110 0111112211110 0
Q ss_pred ----hCceeeeeeeEEEeecccCceeEEEEcCCCCCCc-------------HHHHHHHhhccCeEEEEEeCCCC--Cchh
Q psy5021 57 ----RGITITSASVSIFWEVNKFKYMINIIDTPGHVDF-------------TIEVERSLRVLDGAVIIICASSG--IQPQ 117 (1021)
Q Consensus 57 ----rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f-------------~~~~~~~l~~~D~~ilvvda~~g--~~~~ 117 (1021)
.+..+....+.+.... .....+.||||||..++ ...+..+++.+|++|+|+|+... ....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~-~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYS-PNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEE-TTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeC-CCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 1222333333333321 12457999999999887 66778889999999999987532 2233
Q ss_pred HHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 118 TETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 118 t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
...+++.+...+.|+++|+||+|+...
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCC
Confidence 455566666778999999999998743
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=117.95 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=46.4
Q ss_pred ceeEEEEcCCCCCCcHHH------HHHHhhccCeEEEEEeCCCCCchhHHH-H----HHHHhhcCCCEEEEEeCcCCCC
Q psy5021 76 KYMINIIDTPGHVDFTIE------VERSLRVLDGAVIIICASSGIQPQTET-V----WFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~------~~~~l~~~D~~ilvvda~~g~~~~t~~-~----~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
++.+.||||||..++... ...++.. +.+|+++|+.......... . +......++|.++|+||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 468999999999776422 2345556 8899999997665544322 1 1223345899999999999864
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-10 Score=130.89 Aligned_cols=113 Identities=18% Similarity=0.147 Sum_probs=72.6
Q ss_pred eeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHH
Q psy5021 710 ESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLV 789 (1021)
Q Consensus 710 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~ 789 (1021)
+..+..+.||||||... .....+..+|++++|+|+..+...+... ......| .++|+||+|+.+.. ..+..
T Consensus 168 ~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p-~ivVlNK~Dl~~~~-~~~~~ 238 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELA-DIVVVNKADGEHHK-EARLA 238 (355)
T ss_dssp HHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGC-SEEEEECCCGGGHH-HHHHH
T ss_pred hhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcC-CEEEEECCCCcChh-HHHHH
Confidence 34578899999999543 2223358899999999987654332211 0112457 78899999997532 23334
Q ss_pred HHHHHHhhhccccCC--CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 790 EMEIRELLTEYDFDG--ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 790 ~~~~~~~l~~~~~~~--~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++...+..++... ...+++++||++| .|+++|+++|.+.+
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g-----------~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEG-----------RGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGT-----------BSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCC-----------CCHHHHHHHHHHHH
Confidence 455555544332111 1357999999988 38888888887654
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.5e-10 Score=125.83 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=38.1
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
++.+.|+||||..+-. ......+|.+++|+|+..+...+... . .....|.++++||+|+.
T Consensus 166 ~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 166 GYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCC
Confidence 6789999999964322 33457899999999998764322111 1 12367999999999985
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-09 Score=120.78 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=83.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.-.|||+|.+|+|||||+|+|......+. ...+.|+++....+.+. +..+.|+||||.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~------------------~~pftT~~~~~g~~~~~----~~~i~l~D~pGl 129 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAA------------------EYEFTTLVTVPGVIRYK----GAKIQMLDLPGI 129 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGG------------------GTCSSCCCEEEEEEEET----TEEEEEEECGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCccc------------------CCCCceeeeeeEEEEeC----CcEEEEEeCCCc
Confidence 45799999999999999999964322111 22466888887788888 899999999998
Q ss_pred CCc-------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHh-----hcCCCEEEEEeCcCCCC
Q psy5021 88 VDF-------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ-----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f-------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~-----~~~~p~iiviNK~D~~~ 143 (1021)
.+- ...+...++.+|++++|+|+++++.. ...+...+. ..+.|.++++||+|+.+
T Consensus 130 ~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 130 IDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp CCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred cCCchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 543 34567788999999999999875422 222222222 23578999999999854
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.9e-10 Score=126.15 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=68.4
Q ss_pred eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHH
Q psy5021 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVE 790 (1021)
Q Consensus 711 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~ 790 (1021)
+.+..+.||||||+.++... ....+|++++|+|+..+...+.... ...++| .++|+||+|+.+.. ......
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p-~ivv~NK~Dl~~~~-~~~~~~ 216 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVA-DLIVINKDDGDNHT-NVAIAR 216 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHC-SEEEECCCCTTCHH-HHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhccc-CEEEEECCCCCChH-HHHHHH
Confidence 45788999999998765443 3588999999999976532221111 113567 67889999997632 233333
Q ss_pred HHHHHhhhccccC--CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 791 MEIRELLTEYDFD--GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 791 ~~~~~~l~~~~~~--~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.++.+.+..++.. ....+++++||++| .|++.|+++|.+.+
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g-----------~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEK-----------RGIDEIWHAIIDFK 259 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGT-----------BSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCC-----------CCHHHHHHHHHHHH
Confidence 3444444332210 01247899999987 37888888876643
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-10 Score=137.99 Aligned_cols=165 Identities=13% Similarity=0.073 Sum_probs=97.1
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccc-ccccccc-------------c-cccCCc----------hh------hh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEI-YGGEVRA-------------F-DTIDNA----------PE------EK 696 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~-~~~~~~~-------------~-~~~d~~----------~~------e~ 696 (1021)
.+....++++|.+++|||||+|+|++..... +.+.... + .++... .. ..
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 3445678999999999999999999854311 1111000 0 000000 00 01
Q ss_pred ----hcCceEeeeEEEEeeC-CeEEEEEecCChhh-------------hHHHHHHHh-hhCCEEEEEEECCCCCcHHHH-
Q psy5021 697 ----ERGITISTSHVEYESE-NKHYAHVDCPGHAD-------------YIKNMITGA-AQMDGAILVCSAVDGPMPQTR- 756 (1021)
Q Consensus 697 ----~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~~-------------~~~~~~~~~-~~aD~ailVvDa~~g~~~qt~- 756 (1021)
..|++-+.....+... ...++|+||||..+ +...+..++ ..+|++++|+||+.+...+..
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 1233334444444443 35799999999432 333444555 468999999999988776665
Q ss_pred HHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccc
Q psy5021 757 EHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 757 e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~ 818 (1021)
..+..+...+.| +|+|+||+|+.+...... .+.. -+.+.+.....+++++||++|.
T Consensus 208 ~ll~~L~~~g~p-vIlVlNKiDlv~~~~~~~----~il~-~~~~~l~lg~~~VV~iSA~~G~ 263 (772)
T 3zvr_A 208 KIAKEVDPQGQR-TIGVITKLDLMDEGTDAR----DVLE-NKLLPLRRGYIGVVNRSQKDID 263 (772)
T ss_dssp HHHHHHCTTCSS-EEEEEECTTSSCTTCCSH----HHHT-TCSSCCSSCEEECCCCCCEESS
T ss_pred HHHHHHHhcCCC-EEEEEeCcccCCcchhhH----HHHH-HHhhhhhccCCceEEecccccc
Confidence 566777777888 899999999986332111 1111 0111111122578999999874
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.7e-10 Score=124.75 Aligned_cols=111 Identities=20% Similarity=0.127 Sum_probs=81.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh-----
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD----- 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~----- 726 (1021)
.++|++|++|+|||||+|+|++....+.+. .+.|++.....+.+.+..+.|+||||..+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~----------------pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~ 136 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEY----------------EFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG 136 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGT----------------CSSCCCEEEEEEEETTEEEEEEECGGGCCC----
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCC----------------CCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh
Confidence 589999999999999999999865443332 35688888888889999999999999632
Q ss_pred --hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEeecccc
Q psy5021 727 --YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV-----GVPNIVVFLNKADCV 780 (1021)
Q Consensus 727 --~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~-----~ip~iIvviNK~Dl~ 780 (1021)
....++..++.||++++|+|++++.. +.......+... ..| .++++||+|..
T Consensus 137 ~~~g~~~l~~i~~ad~il~vvD~~~p~~-~~~~i~~EL~~~~~~l~~k~-~~i~~nK~d~~ 195 (376)
T 4a9a_A 137 RGRGKQVIAVARTCNLLFIILDVNKPLH-HKQIIEKELEGVGIRLNKTP-PDILIKKKEKG 195 (376)
T ss_dssp -CHHHHHHHHHHHCSEEEEEEETTSHHH-HHHHHHHHHHHTTEEETCCC-CCEEEEECSSS
T ss_pred hHHHHHHHHHHHhcCccccccccCccHH-HHHHHHHHHHHhhHhhccCC-hhhhhhHhhhh
Confidence 34556777899999999999987432 111111223332 345 56788999963
|
| >1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=7.1e-09 Score=92.59 Aligned_cols=81 Identities=25% Similarity=0.391 Sum_probs=69.2
Q ss_pred CCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCc
Q psy5021 850 DKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEV 929 (1021)
Q Consensus 850 ~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i 929 (1021)
-.|..|.|..++..-. |+++.|+|++|.|++|+.| |.+. ..++|+||+++++++++|.+||+|+++++++.. ++
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~-~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I 105 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPS-GIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KV 105 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSS-CEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCc-eEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-cc
Confidence 3577787777444334 8999999999999999999 7552 358899999999999999999999999999877 99
Q ss_pred ccceEEe
Q psy5021 930 ERGQVLA 936 (1021)
Q Consensus 930 ~~G~vl~ 936 (1021)
++||||-
T Consensus 106 ~~GdVLy 112 (116)
T 1xe1_A 106 KKGDVLE 112 (116)
T ss_dssp CTTCEEE
T ss_pred CCCcEEE
Confidence 9999995
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.7e-10 Score=130.29 Aligned_cols=146 Identities=19% Similarity=0.138 Sum_probs=82.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCC-cccccc--cC-CcccccCh-HHHhhhCceeeeeee-------------E
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSS-HKIGEV--HH-GTTITDWM-QQEQERGITITSASV-------------S 67 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~-~~~g~~--~~-~~~~~d~~-~~e~~rgiTi~~~~~-------------~ 67 (1021)
.+.++|+++|++|+|||||+++|.+..... .+..-+ |. +....++. ......++++..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 457899999999999999999998543110 011111 11 11111221 112334555433110 0
Q ss_pred EEeecccCceeEEEEcCCCCCC----cHHHHHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcC
Q psy5021 68 IFWEVNKFKYMINIIDTPGHVD----FTIEVERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMD 140 (1021)
Q Consensus 68 ~~~~~~~~~~~i~liDtPG~~~----f~~~~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D 140 (1021)
+.| .++.+.||||||... +..+..... ..+|.+++|+|+..|.. ....++.... .+|+ .+|+||+|
T Consensus 179 ~~~----~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKN----ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLD 251 (504)
T ss_dssp HHH----TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTT
T ss_pred HHH----CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCc
Confidence 011 378899999999864 333333332 27899999999998854 2333333332 2785 89999999
Q ss_pred CCCCCHHHHHHHHHHHhCCc
Q psy5021 141 RIGANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 141 ~~~~~~~~~~~~i~~~l~~~ 160 (1021)
... .....+. +...++.+
T Consensus 252 ~~~-~~g~~l~-~~~~~g~P 269 (504)
T 2j37_W 252 GHA-KGGGALS-AVAATKSP 269 (504)
T ss_dssp SCC-CCTHHHH-HHHHHCCC
T ss_pred ccc-chHHHHH-HHHHhCCC
Confidence 863 3333333 55566643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=120.64 Aligned_cols=112 Identities=15% Similarity=0.048 Sum_probs=63.5
Q ss_pred eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHH
Q psy5021 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVE 790 (1021)
Q Consensus 711 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~ 790 (1021)
..+..+.|+||||.... .......+|++++|+|+..+...+ .+.. ..+..| .++|+||+|+.+... .....
T Consensus 164 ~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~---~i~~-~il~~~-~ivVlNK~Dl~~~~~-~~~~~ 234 (349)
T 2www_A 164 GAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQ---GIKR-GIIEMA-DLVAVTKSDGDLIVP-ARRIQ 234 (349)
T ss_dssp HTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------CCSC-SEEEECCCSGGGHHH-HHHHH
T ss_pred cCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHH---HhHH-HHHhcC-CEEEEeeecCCCchh-HHHHH
Confidence 46778999999996422 123357899999999998754222 1211 124567 677889999975221 12222
Q ss_pred HHHHHhhhccccC--CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 791 MEIRELLTEYDFD--GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 791 ~~~~~~l~~~~~~--~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.++...++..... ....+++++||+++ .|+++|+++|.+.+
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g-----------~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSG-----------EGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCC-----------CCHHHHHHHHHHHH
Confidence 3333333322100 01357899999987 37888888876543
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=113.46 Aligned_cols=86 Identities=14% Similarity=0.060 Sum_probs=57.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc-------------cC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN-------------KF 75 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~-------------~~ 75 (1021)
.+|+|+|++|+|||||+++|........ ...+.|+..+...+.+... ..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~------------------~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~ 64 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAA------------------NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc------------------CCCCceECceEEEEecCCcccceeeeeeccccee
Confidence 3699999999999999999975331110 1122344443333333310 00
Q ss_pred ceeEEEEcCCCCCCcHH-------HHHHHhhccCeEEEEEeCCC
Q psy5021 76 KYMINIIDTPGHVDFTI-------EVERSLRVLDGAVIIICASS 112 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~-------~~~~~l~~~D~~ilvvda~~ 112 (1021)
...+++|||||+.++.. .....++.+|++++|+|+++
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 25799999999998753 34567899999999999986
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.6e-10 Score=124.63 Aligned_cols=97 Identities=11% Similarity=-0.045 Sum_probs=61.7
Q ss_pred CeEEEEEecCChhhh-------------HHHHHHHhhhCCEEEEEEECCCCC-c-HHHHHHHHHHHHcCCCeEEEEEeec
Q psy5021 713 NKHYAHVDCPGHADY-------------IKNMITGAAQMDGAILVCSAVDGP-M-PQTREHILLARQVGVPNIVVFLNKA 777 (1021)
Q Consensus 713 ~~~i~liDtpG~~~~-------------~~~~~~~~~~aD~ailVvDa~~g~-~-~qt~e~l~~~~~~~ip~iIvviNK~ 777 (1021)
...++||||||..++ ...+..++..+|++|+|+|+.... . ....+.+..+...+.| +|+|+||+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeCC
Confidence 457999999998776 666778889999999999865422 2 2223333333344677 89999999
Q ss_pred cccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccc
Q psy5021 778 DCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 778 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~ 818 (1021)
|+.+..... ...+......+ ..+++++|+.++.
T Consensus 214 Dl~~~~~~~---~~~~~~~~~~~-----~~~~~~v~~~s~~ 246 (360)
T 3t34_A 214 DLMDKGTDA---VEILEGRSFKL-----KYPWVGVVNRSQA 246 (360)
T ss_dssp GGCCTTCCS---HHHHTTSSSCC-----SSCCEEECCCCHH
T ss_pred ccCCCcccH---HHHHcCccccc-----cCCeEEEEECChH
Confidence 998632211 11122222222 2467888888653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=7e-09 Score=118.06 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=64.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-+|+|+|+.|+|||||+++|+..... ..| . +....+. ..|+....+.+.+...+....++++||||..
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~--~~~--~-~~~~~~~-------~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~ 99 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLY--SPE--Y-PGPSHRI-------KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 99 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCC--CCC--C-CSCC------------CCEEEEEECC------CEEEEEEECC---
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCC--CCC--C-CCcccCC-------ccceeeeeEEEEEecCCcccceeeeechhhh
Confidence 46899999999999999999632211 111 0 1000110 0122212222222222223578999999997
Q ss_pred CcHH------HH--------HHH-----------hhc--cCeEEEEEeCC-CCCchhHHHHHHHHhhcCCCEEEEEeCcC
Q psy5021 89 DFTI------EV--------ERS-----------LRV--LDGAVIIICAS-SGIQPQTETVWFQSQKYKVPKMIFVNKMD 140 (1021)
Q Consensus 89 ~f~~------~~--------~~~-----------l~~--~D~~ilvvda~-~g~~~~t~~~~~~~~~~~~p~iiviNK~D 140 (1021)
++.. .+ ..+ ++. ++++|++++++ .+..+....+++.+.. ++|+|+|+||+|
T Consensus 100 ~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 100 DAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp --------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTT
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEccc
Confidence 6531 11 111 122 34566777766 6888877777777654 899999999999
Q ss_pred CC
Q psy5021 141 RI 142 (1021)
Q Consensus 141 ~~ 142 (1021)
+.
T Consensus 179 ll 180 (418)
T 2qag_C 179 TL 180 (418)
T ss_dssp SS
T ss_pred Cc
Confidence 85
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=7e-09 Score=113.69 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC-
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH- 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~- 87 (1021)
-+|+++|+.|+|||||+++|....- ....| +. .+-.+ ... |+......+..+..+....++++||||+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~-----~~g~~--~~~--t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDL-YPERV-IS-----GAAEK--IER--TVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-----------------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCc-cCCCC-cc-----cCCcc--cCC--cceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 4789999999999999999863211 11111 10 00000 000 1111222233332334568999999998
Q ss_pred ------CCcHHHHH-------HHhhcc-------------CeEEEEEeCCC-CCchhHHHHHHHHhhcCCCEEEEEeCcC
Q psy5021 88 ------VDFTIEVE-------RSLRVL-------------DGAVIIICASS-GIQPQTETVWFQSQKYKVPKMIFVNKMD 140 (1021)
Q Consensus 88 ------~~f~~~~~-------~~l~~~-------------D~~ilvvda~~-g~~~~t~~~~~~~~~~~~p~iiviNK~D 140 (1021)
..|...+. .+++.+ +.++++++.+. +......++++.+. .++|+++|+||.|
T Consensus 88 ~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~D 166 (301)
T 2qnr_A 88 DAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKAD 166 (301)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGG
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCC
Confidence 44433332 344333 23666666554 57777766666654 4689999999999
Q ss_pred CC
Q psy5021 141 RI 142 (1021)
Q Consensus 141 ~~ 142 (1021)
+.
T Consensus 167 l~ 168 (301)
T 2qnr_A 167 TL 168 (301)
T ss_dssp GS
T ss_pred CC
Confidence 85
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-09 Score=111.70 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=91.3
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccc-----ccccccccccCCchhhhhcCceEee-eE---EEE----------ee
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIY-----GGEVRAFDTIDNAPEEKERGITIST-SH---VEY----------ES 711 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~-----~~~~~~~~~~d~~~~e~~~G~Ti~~-~~---~~~----------~~ 711 (1021)
.....++|++|+|||||+++|++...... ...+. . ..|.... ...|.+... .. ..+ ..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~-~-~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVV-S-KADYERV-RRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCC-C-HHHHHHH-HTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCC-C-chhHHHH-HhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 45678999999999999999987521110 00000 0 0011001 111332111 00 011 23
Q ss_pred CCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchh-hHHHHHH
Q psy5021 712 ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDK-ELLDLVE 790 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~-~~~~~~~ 790 (1021)
.+..+.+|||+|+..- +. .....++.+++|+|+..+...+ +......+.| +++|+||+|+.+.. ...+.+.
T Consensus 107 ~~~d~iiidt~G~~~~-~~--~~~~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 107 SDCDLLLIENVGNLIC-PV--DFDLGENYRVVMVSVTEGDDVV----EKHPEIFRVA-DLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp TTCSEEEEEEEEBSSG-GG--GCCCSCSEEEEEEEGGGCTTHH----HHCHHHHHTC-SEEEEECGGGHHHHTCCHHHHH
T ss_pred CCCCEEEEeCCCCCCC-Cc--hhccccCcEEEEEeCCCcchhh----hhhhhhhhcC-CEEEEecccCCcchhhHHHHHH
Confidence 4567899999994110 00 0012578999999998764322 2223345678 77889999986421 1233333
Q ss_pred HHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 791 MEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 791 ~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.+. .++ ...+++++||++| .|+++++++|.+.+
T Consensus 179 ~~~~----~~~---~~~~i~~~Sa~~g-----------~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 179 ADAK----LIN---PRAKIIEMDLKTG-----------KGFEEWIDFLRGIL 212 (221)
T ss_dssp HHHH----HHC---TTSEEEECBTTTT-----------BTHHHHHHHHHHHH
T ss_pred HHHH----HhC---CCCeEEEeecCCC-----------CCHHHHHHHHHHHH
Confidence 3333 222 1368999999987 38899999887654
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.4e-09 Score=116.16 Aligned_cols=82 Identities=22% Similarity=0.168 Sum_probs=55.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-----------------e
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-----------------K 714 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-----------------~ 714 (1021)
+.+|++|.+|+|||||+|+|++......+. .+.|++.....+..++ .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~----------------p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANY----------------PFCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCC----------------CCceECceEEEEecCCcccceeeeeecccceeee
Confidence 568999999999999999999854221111 1223333322233333 4
Q ss_pred EEEEEecCChhhhH-------HHHHHHhhhCCEEEEEEECCC
Q psy5021 715 HYAHVDCPGHADYI-------KNMITGAAQMDGAILVCSAVD 749 (1021)
Q Consensus 715 ~i~liDtpG~~~~~-------~~~~~~~~~aD~ailVvDa~~ 749 (1021)
.+.||||||+.++. ...+..++.+|++++|+|+++
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 78999999987763 234567899999999999986
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-07 Score=105.75 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=56.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec------------c---
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV------------N--- 73 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~------------~--- 73 (1021)
.+|+|+|++|+|||||+++|......+.. + .+.|+.++.....+.. .
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~------------~------p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~ 63 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN------------Y------PFATIDKNVGVVPLEDERLYALQRTFAKGERV 63 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS------------C------CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC------------C------CCceeccceeeEecChHHHHHHHHHhcccccc
Confidence 46899999999999999999865321111 0 0112222222111110 0
Q ss_pred --cCceeEEEEcCCCCCCc-------HHHHHHHhhccCeEEEEEeCCC
Q psy5021 74 --KFKYMINIIDTPGHVDF-------TIEVERSLRVLDGAVIIICASS 112 (1021)
Q Consensus 74 --~~~~~i~liDtPG~~~f-------~~~~~~~l~~~D~~ilvvda~~ 112 (1021)
.....+.+|||||..++ .......++.+|++++|+|+++
T Consensus 64 ~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 01467999999999875 3456778899999999999986
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-08 Score=114.22 Aligned_cols=150 Identities=18% Similarity=0.152 Sum_probs=79.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc-cccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+++++++|.+++|||||+++|++......+ +... .+ ....+..+.....+...+ ..+++|||||..++
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~----~~-----~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPS----HR-----IKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------------CCEEEEEECC------CEEEEEEECC-----
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcc----cC-----CccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 456799999999999999999985421111 0000 00 001111111111122222 36899999998765
Q ss_pred HH------HHH--------HHh-----------h--hCCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCeEEEEEeeccc
Q psy5021 728 IK------NMI--------TGA-----------A--QMDGAILVCSAV-DGPMPQTREHILLARQVGVPNIVVFLNKADC 779 (1021)
Q Consensus 728 ~~------~~~--------~~~-----------~--~aD~ailVvDa~-~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl 779 (1021)
.. .+. .++ . .+|++|++++.+ .+......+++..+.. +++ +|+|+||+|+
T Consensus 102 ~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~-iIlVinK~Dl 179 (418)
T 2qag_C 102 VDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADT 179 (418)
T ss_dssp ------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE-EEEEEESTTS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCc-EEEEEEcccC
Confidence 32 111 111 1 245666666665 5777777666666543 677 9999999999
Q ss_pred cchhhHHHHHHHHHHHhhhccccCCCceEEEEeccccc
Q psy5021 780 VQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLA 817 (1021)
Q Consensus 780 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~ 817 (1021)
.... .....+.++.+.+...+ ++++.+|+.++
T Consensus 180 l~~~-ev~~~k~~i~~~~~~~~-----i~~~~~sa~~~ 211 (418)
T 2qag_C 180 LTPE-ECQQFKKQIMKEIQEHK-----IKIYEFPETDD 211 (418)
T ss_dssp SCHH-HHHHHHHHHHHHHHHHT-----CCCCCCC----
T ss_pred ccHH-HHHHHHHHHHHHHHHcC-----CeEEeCCCCCC
Confidence 8633 34444566666666554 45788898865
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-08 Score=110.30 Aligned_cols=152 Identities=22% Similarity=0.165 Sum_probs=74.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--CeEEEEEecCCh----
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--NKHYAHVDCPGH---- 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--~~~i~liDtpG~---- 724 (1021)
+++++++|.+++|||||+++|.+.......+ .. .+.. ....++........++.. ...+++|||||+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~----~~g~--~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~ 90 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERV-IS----GAAE--KIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAI 90 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-------------------------------CEEEEC---CCEEEEEEEEC------
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cc----cCCc--ccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhc
Confidence 3566999999999999999988642221111 10 0000 000111111111222222 357899999998
Q ss_pred ---hhhHHHHH-------HHhhh-------------CCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 725 ---ADYIKNMI-------TGAAQ-------------MDGAILVCSAVD-GPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 725 ---~~~~~~~~-------~~~~~-------------aD~ailVvDa~~-g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
++|..... .+++. +++++++++.+. +......+.+..+. .+++ +++|+||.|+.
T Consensus 91 ~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~-iilV~~K~Dl~ 168 (301)
T 2qnr_A 91 NCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKADTL 168 (301)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSC-EEEEECCGGGS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCC-EEEEEEeCCCC
Confidence 44322221 22221 345666666544 46665554444332 2456 89999999997
Q ss_pred chhhHHHHHHHHHHHhhhccccCCCceEEEEeccccc
Q psy5021 781 QDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLA 817 (1021)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~ 817 (1021)
...+ ....++++.++++..+ ++++++||+++
T Consensus 169 ~~~e-~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~ 199 (301)
T 2qnr_A 169 TLKE-RERLKKRILDEIEEHN-----IKIYHLPDAES 199 (301)
T ss_dssp CHHH-HHHHHHHHHHHHHHTT-----CCCCCCC----
T ss_pred CHHH-HHHHHHHHHHHHHHcC-----CeEEecCCccc
Confidence 6332 2333456666666655 46889999976
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.8e-08 Score=105.78 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=69.1
Q ss_pred eEEEEEecCChhhhHHH------HHHHhhhCCEEEEEEECCCCCcHHHHH-H----HHHHHHcCCCeEEEEEeeccccch
Q psy5021 714 KHYAHVDCPGHADYIKN------MITGAAQMDGAILVCSAVDGPMPQTRE-H----ILLARQVGVPNIVVFLNKADCVQD 782 (1021)
Q Consensus 714 ~~i~liDtpG~~~~~~~------~~~~~~~aD~ailVvDa~~g~~~qt~e-~----l~~~~~~~ip~iIvviNK~Dl~~~ 782 (1021)
..+.||||||+.++... +...+.. +++++|+|+.......... . +......++| +++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGAT-TIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSC-EEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCC-eEEEEeccccccc
Confidence 47999999998776422 2234455 8999999987655443322 1 1223345788 8889999998763
Q ss_pred hhHHHHHHHHH---HHh---------------------hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhh
Q psy5021 783 KELLDLVEMEI---REL---------------------LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVL 838 (1021)
Q Consensus 783 ~~~~~~~~~~~---~~~---------------------l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l 838 (1021)
.+ .+.+.+.+ ..+ ++.++. ..+++++||+++ +++++|+++|
T Consensus 187 ~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~SA~~~-----------~gi~~l~~~i 251 (262)
T 1yrb_A 187 EE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP---PVRVLYLSAKTR-----------EGFEDLETLA 251 (262)
T ss_dssp HH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC---CCCCEECCTTTC-----------TTHHHHHHHH
T ss_pred cc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC---cccceEEEecCc-----------ccHHHHHHHH
Confidence 21 11111111 111 122221 246899999987 3889999988
Q ss_pred hccC
Q psy5021 839 DSSI 842 (1021)
Q Consensus 839 ~~~l 842 (1021)
.+.+
T Consensus 252 ~~~~ 255 (262)
T 1yrb_A 252 YEHY 255 (262)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-08 Score=109.64 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=38.3
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
++.+.||||||..+-.. .....+|.+++|+|+..+...+. +.. ...++|.++++||+|+.
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~--~i~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKK--GIFELADMIAVNKADDG 206 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCT--THHHHCSEEEEECCSTT
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHH--HHhccccEEEEEchhcc
Confidence 67899999999865322 23478999999999875532110 000 01135778889999974
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=98.68 E-value=6.2e-08 Score=108.42 Aligned_cols=82 Identities=20% Similarity=0.149 Sum_probs=54.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe---------------------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE--------------------- 710 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~--------------------- 710 (1021)
+++|++|.+|+|||||+|+|++....+.+.++ .|++.......
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~----------------~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~ 65 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPF----------------ATIDKNVGVVPLEDERLYALQRTFAKGERVPP 65 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCG----------------GGGSTTEEEEECCCHHHHHHHHHHCBTTBCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCC----------------ceeccceeeEecChHHHHHHHHHhcccccccc
Confidence 46799999999999999999985322221111 11111111111
Q ss_pred eCCeEEEEEecCChhhh-------HHHHHHHhhhCCEEEEEEECCC
Q psy5021 711 SENKHYAHVDCPGHADY-------IKNMITGAAQMDGAILVCSAVD 749 (1021)
Q Consensus 711 ~~~~~i~liDtpG~~~~-------~~~~~~~~~~aD~ailVvDa~~ 749 (1021)
.....+.||||||+.++ .......++.+|++++|+|+++
T Consensus 66 ~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 66 VVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 12357899999998764 2456677899999999999986
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-08 Score=103.55 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc--cCCcccccChHHHhhhCce---eeeee-eEEE-eec------
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTTITDWMQQEQERGIT---ITSAS-VSIF-WEV------ 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~--~~~~~~~d~~~~e~~rgiT---i~~~~-~~~~-~~~------ 72 (1021)
.+.++|+++|+.|+|||||+++|+...........+ +.+ +..|....+.. |.. +.... ..+. |..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~-~~~d~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI-AKFDAERMEKH-GAKVVPLNTGKECHLDAHLVGHALED 113 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT-THHHHHHHHTT-TCEEEEEECTTCSSCCHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC-CCccHHHHHhc-CCcEEEecCCceEeccHHHHHHHHHH
Confidence 467999999999999999999998654221111111 111 11222111111 111 11000 0000 000
Q ss_pred -ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 73 -NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 73 -~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
...++.+.++||+|...-... .-...+..+.++|+..+...... .....+.|.++++||+|+.
T Consensus 114 l~~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLA 177 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGH
T ss_pred HhcCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccC
Confidence 011347899999995321100 11245667888987554322211 1122468999999999974
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.64 E-value=3.8e-08 Score=109.75 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=86.2
Q ss_pred ceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-----------cHHHHHHHHHHHH----
Q psy5021 700 ITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-----------MPQTREHILLARQ---- 764 (1021)
Q Consensus 700 ~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-----------~~qt~e~l~~~~~---- 764 (1021)
.|+......+..++..+.+|||+|+++|.+.+..+++.+|++|+|+|.++-. +.....++..+..
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 3444445566777889999999999999999999999999999999988621 2333444444433
Q ss_pred cCCCeEEEEEeeccccchh----------------hHHHHHHHHHHHhhhcccc--CCCceEEEEecccccccCCCCCcc
Q psy5021 765 VGVPNIVVFLNKADCVQDK----------------ELLDLVEMEIRELLTEYDF--DGENTKIVIGSALLALEGKDDNQL 826 (1021)
Q Consensus 765 ~~ip~iIvviNK~Dl~~~~----------------~~~~~~~~~~~~~l~~~~~--~~~~~~ii~iSa~~~~~~~~~~~~ 826 (1021)
.++| +|+++||+|+.... ...++..+-+...+..+.. ....+.++.+||+++
T Consensus 259 ~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~--------- 328 (353)
T 1cip_A 259 TDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT--------- 328 (353)
T ss_dssp TTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH---------
T ss_pred cCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc---------
Confidence 2566 99999999985311 0122222222222222211 123578899999987
Q ss_pred CcchHHHHHHhhhcc
Q psy5021 827 GTTSIKKLLDVLDSS 841 (1021)
Q Consensus 827 ~~~~i~~Ll~~l~~~ 841 (1021)
.|+..+++++.+.
T Consensus 329 --~nV~~vF~~v~~~ 341 (353)
T 1cip_A 329 --KNVQFVFDAVTDV 341 (353)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHH
Confidence 4888888877653
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.9e-07 Score=106.92 Aligned_cols=225 Identities=12% Similarity=0.081 Sum_probs=114.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHc----CCCcccccccCCc-ccccCh-HHHhhhCceeeeeee-----EE---Eee
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYS----GSSHKIGEVHHGT-TITDWM-QQEQERGITITSASV-----SI---FWE 71 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~----~~~~~~g~~~~~~-~~~d~~-~~e~~rgiTi~~~~~-----~~---~~~ 71 (1021)
...++|+++|+.|+||||++..|.+.. |.-.-.-+.+... ...+.. ......|+.+-.... .+ .+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 357899999999999999999997432 2211111111110 011100 012234444433210 00 000
Q ss_pred c-ccCceeEEEEcCCCCCCcHHHHHHH------hhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCCCC
Q psy5021 72 V-NKFKYMINIIDTPGHVDFTIEVERS------LRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDRIG 143 (1021)
Q Consensus 72 ~-~~~~~~i~liDtPG~~~f~~~~~~~------l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~~~ 143 (1021)
. ...++.+.||||||...+......+ +..+|.+++|+|+..|.. .....+... .++++ -+++||+|...
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~-~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFN-EALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHH-HHSCCCCEEEECTTSSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHh-ccCCCeEEEEecCCCCc
Confidence 0 1136889999999987765444443 346789999999987732 222222221 23553 46899999753
Q ss_pred CCHHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeee-ccCChhhHHHHHHHHHHHHHHhcCCCH
Q psy5021 144 ANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIII-KNIDKDQLSAFDYYNELMLETLSNNDE 222 (1021)
Q Consensus 144 ~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~e~~~~~d~ 222 (1021)
... ...++...++.+.. |.|....+ .....|+++.+.. ..-..+....++.+++.+ ..+.++
T Consensus 255 -~~g-~~l~i~~~~~~Pi~-----------~iG~ge~v-~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~---~~~~~~ 317 (433)
T 2xxa_A 255 -RGG-AALSIRHITGKPIK-----------FLGVGEKT-EALEPFHPDRIASRILGMGDVLSLIEDIESKV---DRAQAE 317 (433)
T ss_dssp -CCT-HHHHHHHHHCCCEE-----------EEECSSSS-SCEEECCHHHHHHHHHCCCTTHHHHHHHHHHH---HHHHHH
T ss_pred -cHH-HHHHHHHHHCCCeE-----------EEecCCCc-hhhhhcChHHHHHHHhCccchHHHHHHHHHhh---hhhhhH
Confidence 332 33356666664332 11211111 0111222211000 000001111122222111 123468
Q ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhcCc
Q psy5021 223 FFLEKYINN-NYSINDIKNSIRKLVLKNK 250 (1021)
Q Consensus 223 ~l~e~~l~~-~~~~~~~~~~~~~~~~~~~ 250 (1021)
+++++|+++ +++.+++...+++....+.
T Consensus 318 ~l~~k~~~~~~f~~~d~~~ql~~~~~~g~ 346 (433)
T 2xxa_A 318 KLASKLKKGDGFDLNDFLEQLRQMKNMGG 346 (433)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Confidence 899999999 8999999999998765543
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=6.8e-08 Score=107.50 Aligned_cols=112 Identities=16% Similarity=0.044 Sum_probs=62.4
Q ss_pred eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHH
Q psy5021 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVE 790 (1021)
Q Consensus 711 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~ 790 (1021)
..+..+.|+||||..+-- ......+|++++|+|+..+...+ .+.. ....++ .++++||+|+...........
T Consensus 145 ~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~---~i~~-~i~~~~-~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQ---GIKK-GIFELA-DMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp HTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC---------CCT-THHHHC-SEEEEECCSTTCCHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHH---HHHH-HHhccc-cEEEEEchhccCchhHHHHHH
Confidence 467899999999965321 12247899999999986542111 1100 001235 355679999754222222233
Q ss_pred HHHHHhhhccccC--CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 791 MEIRELLTEYDFD--GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 791 ~~~~~~l~~~~~~--~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++...+..+.-. ....+++++||+++. ++++|++.|.+.
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~-----------gi~~L~~~I~~~ 258 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGK-----------GLDSLWSRIEDH 258 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTB-----------SHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCC-----------CHHHHHHHHHHH
Confidence 4444433322200 002468889999873 777777777654
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=9.8e-08 Score=106.78 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=77.0
Q ss_pred eEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH----c
Q psy5021 701 TISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-----------PMPQTREHILLARQ----V 765 (1021)
Q Consensus 701 Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-----------~~~qt~e~l~~~~~----~ 765 (1021)
|+......+..++..+.+|||+|+++|.+.+..++..++++|+|+|.++- -+.....++..+.. .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 44444456677788999999999999999999999999999999999872 12333444444433 2
Q ss_pred CCCeEEEEEeeccccchh-----------------hHHHHHHHHHHHhhhccccC--CCceEEEEecccccccCCCCCcc
Q psy5021 766 GVPNIVVFLNKADCVQDK-----------------ELLDLVEMEIRELLTEYDFD--GENTKIVIGSALLALEGKDDNQL 826 (1021)
Q Consensus 766 ~ip~iIvviNK~Dl~~~~-----------------~~~~~~~~~~~~~l~~~~~~--~~~~~ii~iSa~~~~~~~~~~~~ 826 (1021)
++| +|+++||+|+.+.. ...++..+-+...+..+.-. ...+.++++||+++
T Consensus 268 ~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~--------- 337 (362)
T 1zcb_A 268 NVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT--------- 337 (362)
T ss_dssp TSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH---------
T ss_pred CCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc---------
Confidence 566 99999999986311 11222222221111111111 23467899999987
Q ss_pred CcchHHHHHHhhhcc
Q psy5021 827 GTTSIKKLLDVLDSS 841 (1021)
Q Consensus 827 ~~~~i~~Ll~~l~~~ 841 (1021)
.|+..+++++.+.
T Consensus 338 --~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 338 --ENIRLVFRDVKDT 350 (362)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHH
Confidence 4888888777553
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=106.03 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=63.0
Q ss_pred hCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-----------chhHHHHHHHH
Q psy5021 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-----------QPQTETVWFQS 125 (1021)
Q Consensus 57 rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-----------~~~t~~~~~~~ 125 (1021)
+..|+......+.++ +..+.+|||+|+..|...+..+++.++++|+|+|.++-. .......|...
T Consensus 177 ~~~T~Gi~~~~~~~~----~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i 252 (353)
T 1cip_A 177 RVKTTGIVETHFTFK----DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 252 (353)
T ss_dssp CCCCCSEEEEEEEET----TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH
T ss_pred cCceeceEEEEEeeC----CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH
Confidence 445655555566666 789999999999999999999999999999999998732 12233444444
Q ss_pred hh----cCCCEEEEEeCcCCC
Q psy5021 126 QK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 126 ~~----~~~p~iiviNK~D~~ 142 (1021)
.. .++|+++|+||+|+.
T Consensus 253 ~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 253 CNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp HTCGGGTTSEEEEEEECHHHH
T ss_pred HcCccccCCcEEEEEECcCch
Confidence 33 479999999999973
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.6e-07 Score=103.36 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=53.6
Q ss_pred ceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-----------chhHHHHHHHHhh
Q psy5021 59 ITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-----------QPQTETVWFQSQK 127 (1021)
Q Consensus 59 iTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-----------~~~t~~~~~~~~~ 127 (1021)
.|+......+.++ +..+.+|||||+..|...+..+++.++++|+|+|.++-. .......|.....
T Consensus 187 ~T~Gi~~~~~~~~----~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 187 PTKGIHEYDFEIK----NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCSSEEEEEEEET----TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CccceEEEEeeeC----CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 3444444455555 789999999999999999999999999999999999731 1223344544432
Q ss_pred ----cCCCEEEEEeCcCCC
Q psy5021 128 ----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 128 ----~~~p~iiviNK~D~~ 142 (1021)
.++|+|+|+||+|+.
T Consensus 263 ~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp CGGGTTSEEEEEEECHHHH
T ss_pred chhhCCCCEEEEEEChhhh
Confidence 478999999999973
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=98.38 Aligned_cols=217 Identities=17% Similarity=0.133 Sum_probs=102.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHc---CCCcccccccCC-cccccChH-HHhhhCceeeeeeeEEE--------e-ec
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYS---GSSHKIGEVHHG-TTITDWMQ-QEQERGITITSASVSIF--------W-EV 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~---~~~~~~g~~~~~-~~~~d~~~-~e~~rgiTi~~~~~~~~--------~-~~ 72 (1021)
+-+.|+++|+.|+||||++..|.... |.-...-..+.. ....+... .....|+.+........ . ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35789999999999999999987422 111000000000 00000000 00112332221100000 0 00
Q ss_pred ccCceeEEEEcCCCCCC------cHHHHHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVD------FTIEVERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~------f~~~~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
...++.+.+|||||... +..++....+ ..|.+++|+|+..|... ....+.....--+..+++||+|.. +
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD~~-a 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMDGT-A 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGGGC-S
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccccc-c
Confidence 11367899999999754 3344433222 35999999999976332 223333333335678899999985 4
Q ss_pred CHHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeec-cCChhhHH------HHHHHHHHHHHHh
Q psy5021 145 NYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIK-NIDKDQLS------AFDYYNELMLETL 217 (1021)
Q Consensus 145 ~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~e~~ 217 (1021)
.....+ ++....+.+... ++.+.+.. ... ..|+.+.+ .+...++++-+.+
T Consensus 253 ~~G~al-s~~~~~g~Pi~f----ig~Ge~v~------------------dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~ 309 (433)
T 3kl4_A 253 KGGGAL-SAVVATGATIKF----IGTGEKID------------------ELETFNAKRFVSRILGMGDIESILEKVKGLE 309 (433)
T ss_dssp CHHHHH-HHHHHHTCEEEE----EECCSSSS------------------CEEECCHHHHHHHHHCSSHHHHHHHHHHHC-
T ss_pred cchHHH-HHHHHHCCCEEE----EECCCChH------------------hCccCCHHHHHHHhcCCchHHHHHHHHHHhh
Confidence 444333 333445543211 11111110 011 12333443 3445666776766
Q ss_pred cCCC-HHHHHHHHcC--CCCHHHHHHHHHHHHhcC
Q psy5021 218 SNND-EFFLEKYINN--NYSINDIKNSIRKLVLKN 249 (1021)
Q Consensus 218 ~~~d-~~l~e~~l~~--~~~~~~~~~~~~~~~~~~ 249 (1021)
.+.+ ++++++|.++ +++-++++..+++.-..+
T Consensus 310 ~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg 344 (433)
T 3kl4_A 310 EYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMG 344 (433)
T ss_dssp ------------------CCHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 6655 7799999999 899999999888765554
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.3e-08 Score=111.52 Aligned_cols=132 Identities=12% Similarity=0.067 Sum_probs=81.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
++|+++|.+|+|||||+|+|+........ ..... ..+|.|..... +.+. ..+.++||||..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~------~~~~~------~~~gtT~~~~~--~~~~-----~~~~liDtPG~~ 223 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGN------VITTS------YFPGTTLDMIE--IPLE-----SGATLYDTPGII 223 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTC------CCEEE------ECTTSSCEEEE--EECS-----TTCEEEECCSCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcc------ceeec------CCCCeEEeeEE--EEeC-----CCeEEEeCCCcC
Confidence 57999999999999999999865210000 00000 12345554332 2222 248999999975
Q ss_pred CcH-------HHHHHHh---hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-CHHHHHHHHHHHh
Q psy5021 89 DFT-------IEVERSL---RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA-NYNNCIIDIKKKF 157 (1021)
Q Consensus 89 ~f~-------~~~~~~l---~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~l 157 (1021)
+.. .+....+ ...|.+++++|+...........+.++...+.|+++++||+|.... +.+...+.+++.+
T Consensus 224 ~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~ 303 (369)
T 3ec1_A 224 NHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQL 303 (369)
T ss_dssp CCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHB
T ss_pred cHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhc
Confidence 432 2233334 6789999999985321111111134445567899999999998643 3566667777778
Q ss_pred CC
Q psy5021 158 NC 159 (1021)
Q Consensus 158 ~~ 159 (1021)
|.
T Consensus 304 g~ 305 (369)
T 3ec1_A 304 GE 305 (369)
T ss_dssp TT
T ss_pred CC
Confidence 75
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.37 E-value=3.9e-07 Score=104.36 Aligned_cols=226 Identities=18% Similarity=0.181 Sum_probs=107.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcC---CCcccccccCC-cccccChHH-HhhhCceeeeee-e-----EEEeec--c
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSG---SSHKIGEVHHG-TTITDWMQQ-EQERGITITSAS-V-----SIFWEV--N 73 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~---~~~~~g~~~~~-~~~~d~~~~-e~~rgiTi~~~~-~-----~~~~~~--~ 73 (1021)
..++|+++|++|+||||++..|..... .-...-+.+.. ....+.... ....|+.+.... . .+.... .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 357899999999999999999975321 10000000100 011111111 111222222111 0 000000 0
Q ss_pred cCceeEEEEcCCCCCCcHHHHHHHh------hccCeEEEEEeCCCCCchhHHHHHHHHhhcCC-C-EEEEEeCcCCCCCC
Q psy5021 74 KFKYMINIIDTPGHVDFTIEVERSL------RVLDGAVIIICASSGIQPQTETVWFQSQKYKV-P-KMIFVNKMDRIGAN 145 (1021)
Q Consensus 74 ~~~~~i~liDtPG~~~f~~~~~~~l------~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~-p-~iiviNK~D~~~~~ 145 (1021)
-.++.+.||||||...........+ ..+|.+++|+|+..|.. .....+.. ...+ | ..+++||+|... .
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~~-~~~~~~i~gvVlnK~D~~~-~ 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKAF-KEAVGEIGSIIVTKLDGSA-K 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHHH-HTTSCSCEEEEEECSSSCS-T
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHHH-hhcccCCeEEEEeCCCCcc-c
Confidence 1367899999999876543333322 25899999999987742 22222222 2346 7 788999999853 3
Q ss_pred HHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHH--HHHHHHH----hcC
Q psy5021 146 YNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYY--NELMLET----LSN 219 (1021)
Q Consensus 146 ~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~e~----~~~ 219 (1021)
....+ ++...++.+... ++.+..+. |+.. |.+. .+....... ...|+|. +.+
T Consensus 254 ~g~~l-~~~~~~~~pi~~----ig~Ge~~~---dl~~-----f~~~---------~~~s~l~g~gdi~~L~e~~~~~~~e 311 (432)
T 2v3c_C 254 GGGAL-SAVAETKAPIKF----IGIGEGID---DLEP-----FDPK---------KFISRLLGMGDLESLLEKAEDMVDE 311 (432)
T ss_dssp THHHH-HHHHHSSCCEEE----ECCSSSSS---SCCB-----CCHH---------HHHHHHTCSSCSSTTSSTTTSCSCS
T ss_pred hHHHH-HHHHHHCCCEEE----eecCcccc---cccc-----CCHH---------HHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 33333 466667654321 22222221 1110 1110 000000000 0122222 234
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHhcC---ceeEEEecc
Q psy5021 220 NDEFFLEKYINNNYSINDIKNSIRKLVLKN---KIIPIMCGS 258 (1021)
Q Consensus 220 ~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~---~~~Pv~~~S 258 (1021)
.++++.++|+.++++.+++...+++....+ .+++.++++
T Consensus 312 ~~~~~~~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~ 353 (432)
T 2v3c_C 312 KTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGF 353 (432)
T ss_dssp SSSTTHHHHCCSCCHHHHHHHHTTTTSCC-------------
T ss_pred hhHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHcccc
Confidence 446688999888888888888877655444 445555554
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=96.63 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=62.7
Q ss_pred cCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCC----------C-CcHHHHHHHHHHHH--
Q psy5021 698 RGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVD----------G-PMPQTREHILLARQ-- 764 (1021)
Q Consensus 698 ~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~----------g-~~~qt~e~l~~~~~-- 764 (1021)
+..|+......+...+..+.+|||+|+++|.+.+..+++.++++|+|+|.++ . -+.....++..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 3445555666777788999999999999999999999999999999999872 1 12333444444433
Q ss_pred --cCCCeEEEEEeeccccc
Q psy5021 765 --VGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 765 --~~ip~iIvviNK~Dl~~ 781 (1021)
.++| +|+++||+|+..
T Consensus 225 ~~~~~p-iiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAV-KLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSE-EEEEEECHHHHH
T ss_pred ccCCCe-EEEEEECchhhh
Confidence 2566 999999999864
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=96.37 Aligned_cols=131 Identities=11% Similarity=0.155 Sum_probs=85.5
Q ss_pred CceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECC-------CCC----cHHHHHHHHHHHH---
Q psy5021 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAV-------DGP----MPQTREHILLARQ--- 764 (1021)
Q Consensus 699 G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~-------~g~----~~qt~e~l~~~~~--- 764 (1021)
..|+......++.++..+.+|||+|+++|.+.+..+++.++++|+|+|.+ +.. +......+..+..
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 34555566677788899999999999999999999999999999999765 211 1233344443332
Q ss_pred -cCCCeEEEEEeeccccchh-----------------hHHHHHHHHHHHhhhcccc-CCCceEEEEecccccccCCCCCc
Q psy5021 765 -VGVPNIVVFLNKADCVQDK-----------------ELLDLVEMEIRELLTEYDF-DGENTKIVIGSALLALEGKDDNQ 825 (1021)
Q Consensus 765 -~~ip~iIvviNK~Dl~~~~-----------------~~~~~~~~~~~~~l~~~~~-~~~~~~ii~iSa~~~~~~~~~~~ 825 (1021)
.++| +|+++||+|+.+.+ ...++..+-+...+..+.. ....+.+..+||+.+
T Consensus 232 ~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~-------- 302 (327)
T 3ohm_A 232 FQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT-------- 302 (327)
T ss_dssp GTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH--------
T ss_pred cCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC--------
Confidence 2566 99999999986421 1122222222222222211 123467788999977
Q ss_pred cCcchHHHHHHhhhcc
Q psy5021 826 LGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 826 ~~~~~i~~Ll~~l~~~ 841 (1021)
.|+..+++.+.+.
T Consensus 303 ---~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 303 ---ENIRFVFAAVKDT 315 (327)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH
Confidence 4788877777653
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=98.40 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=60.4
Q ss_pred eEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCC----------CC-cHHHHHHHHHHHHc----
Q psy5021 701 TISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVD----------GP-MPQTREHILLARQV---- 765 (1021)
Q Consensus 701 Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~----------g~-~~qt~e~l~~~~~~---- 765 (1021)
|+......+..++..+.+|||+|+++|.+.+..+++.++++|+|+|.++ .. +.....++..+...
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4434445566778899999999999999999999999999999999986 21 23344455444332
Q ss_pred CCCeEEEEEeeccccc
Q psy5021 766 GVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 766 ~ip~iIvviNK~Dl~~ 781 (1021)
++| +|+++||+|+..
T Consensus 284 ~~p-iiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TIS-VILFLNKQDLLA 298 (402)
T ss_dssp SCC-EEEEEECHHHHH
T ss_pred CCe-EEEEEEChhhhh
Confidence 467 999999999854
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.6e-06 Score=98.15 Aligned_cols=135 Identities=17% Similarity=0.193 Sum_probs=79.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.+.|++|+|+.|+|||||++.|+... + . |..... ...+.+.. .+.+.++..+....++++|+||
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~--l------~-g~~~~~-----~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~ 104 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTK--F------E-GEPATH-----TQPGVQLQ--SNTYDLQESNVRLKLTIVSTVG 104 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSC--C-------------------CCSSCEEE--EEEEEEEC--CEEEEEEEEEEC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcc--c------c-CCcCCC-----CCccceEe--eEEEEeecCccccccchhhhhh
Confidence 45679999999999999999996431 0 0 000000 01122332 2333333222223689999999
Q ss_pred CCCcH--------------HHHHHHhh-------------cc--C-eEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEE
Q psy5021 87 HVDFT--------------IEVERSLR-------------VL--D-GAVIIICASSGIQPQTETVWFQSQKYKVPKMIFV 136 (1021)
Q Consensus 87 ~~~f~--------------~~~~~~l~-------------~~--D-~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iivi 136 (1021)
..+.. ..+..++. .+ | ++++++|+..+......++++.+. .++|+|+|+
T Consensus 105 ~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi 183 (427)
T 2qag_B 105 FGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPII 183 (427)
T ss_dssp CCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEE
T ss_pred hhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEE
Confidence 85431 11212211 11 2 467788999999998888888876 789999999
Q ss_pred eCcCCCCC-CHHHHHHHHHHHhC
Q psy5021 137 NKMDRIGA-NYNNCIIDIKKKFN 158 (1021)
Q Consensus 137 NK~D~~~~-~~~~~~~~i~~~l~ 158 (1021)
||+|.... +.......+++.|.
T Consensus 184 ~KtD~Lt~~E~~~l~~~I~~~L~ 206 (427)
T 2qag_B 184 AKADAISKSELTKFKIKITSELV 206 (427)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHB
T ss_pred cchhccchHHHHHHHHHHHHHHH
Confidence 99998643 34455556665553
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=99.51 Aligned_cols=134 Identities=16% Similarity=0.228 Sum_probs=74.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh---
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY--- 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~--- 727 (1021)
+.|++|.+|+|||||+|.|.+.. +.+... .....+.+.......+...+ ..++++|+||....
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~--l~g~~~----------~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~ 111 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTK--FEGEPA----------THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINK 111 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSC--C-----------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCH
T ss_pred EEEEECCCCCCHHHHHHHHhCcc--ccCCcC----------CCCCccceEeeEEEEeecCccccccchhhhhhhhhcccc
Confidence 47999999999999999999852 111000 00012333332222233222 36899999995432
Q ss_pred ----------HHH-H---HHHh---h-------hC--C-EEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 728 ----------IKN-M---ITGA---A-------QM--D-GAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 728 ----------~~~-~---~~~~---~-------~a--D-~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
+.. + +... . .+ | +++||+|+.++......+.+..+. .++| +|+|+||+|..
T Consensus 112 ~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~-vI~Vi~KtD~L 189 (427)
T 2qag_B 112 EDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVN-IIPIIAKADAI 189 (427)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSE-EEEEESCGGGS
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCC-EEEEEcchhcc
Confidence 111 1 1111 1 11 2 477788998888888777776665 5666 99999999988
Q ss_pred chhhHHHHHHHHHHHhhhccc
Q psy5021 781 QDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
...+ .......+.+.++..|
T Consensus 190 t~~E-~~~l~~~I~~~L~~~g 209 (427)
T 2qag_B 190 SKSE-LTKFKIKITSELVSNG 209 (427)
T ss_dssp CHHH-HHHHHHHHHHHHBTTB
T ss_pred chHH-HHHHHHHHHHHHHHcC
Confidence 6433 4445555655444433
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=8.4e-06 Score=92.33 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=67.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.++|+|+.|+|||||++.|...... ..|.+ ..+-.+. |.. .+.++. .....++++|+||..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI-----~~~g~~~------t~~----~~v~q~-~~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNE--EEGAA-----KTGVVEV------TME----RHPYKH-PNIPNVVFWDLPGIG 131 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTT--STTSC-----CCCC----------CC----CEEEEC-SSCTTEEEEECCCGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc--cCceE-----EECCeec------cee----EEeccc-cccCCeeehHhhccc
Confidence 48999999999999999999742110 11222 1111110 100 112221 112368999999963
Q ss_pred Cc---HHHHHHH--hhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCC
Q psy5021 89 DF---TIEVERS--LRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 89 ~f---~~~~~~~--l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~ 141 (1021)
.- ..+.... +...|..++ +++.. .+.|...+.+.+...+.|+++|+||.|+
T Consensus 132 ~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 132 STNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDS 187 (413)
T ss_dssp GSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred chHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcc
Confidence 21 2223222 233455554 77754 4778888888888889999999999986
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.3e-07 Score=101.83 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=50.3
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----------------C
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----------------N 713 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----------------~ 713 (1021)
...+|++|.+|+|||||+|+|++..... ....+.|++.....+... .
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~----------------~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~ 85 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASA----------------ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIP 85 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccc----------------cCCCccccCceeEEEEECCccceeeccccCcccccc
Confidence 4678999999999999999999854211 112234444444333332 2
Q ss_pred eEEEEEecCChhhhHH-------HHHHHhhhCCEEEEEEECCC
Q psy5021 714 KHYAHVDCPGHADYIK-------NMITGAAQMDGAILVCSAVD 749 (1021)
Q Consensus 714 ~~i~liDtpG~~~~~~-------~~~~~~~~aD~ailVvDa~~ 749 (1021)
..+.||||||+.++.. .+..+++.+|++++|+|+.+
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3589999999887644 56778899999999999975
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-07 Score=106.90 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=79.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCC-cccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSS-HKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~-~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
++|+++|.+|+|||||+|+|+...... .. ..... ..+|.|..... +.+. ..+.++||||.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~------~~~~~------~~~gtT~~~~~--~~~~-----~~~~liDtPG~ 221 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETEN------VITTS------HFPGTTLDLID--IPLD-----EESSLYDTPGI 221 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSS------CCEEE------CCC----CEEE--EESS-----SSCEEEECCCB
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccccc------ceecC------CCCCeecceEE--EEec-----CCeEEEeCCCc
Confidence 579999999999999999998653211 00 00011 12344544332 2222 23899999998
Q ss_pred CCcH-------HHHHHH---hhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-CHHHHHHHHHHH
Q psy5021 88 VDFT-------IEVERS---LRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA-NYNNCIIDIKKK 156 (1021)
Q Consensus 88 ~~f~-------~~~~~~---l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~ 156 (1021)
.+.. .+.... ....+..++++|+...........+.++...+.|+++++||+|.... +.+...+.+++.
T Consensus 222 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~ 301 (368)
T 3h2y_A 222 INHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNH 301 (368)
T ss_dssp CCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHH
T ss_pred CcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHH
Confidence 5432 222222 35678999999984321111111133445567899999999998754 356677777788
Q ss_pred hCCc
Q psy5021 157 FNCI 160 (1021)
Q Consensus 157 l~~~ 160 (1021)
+|..
T Consensus 302 ~g~~ 305 (368)
T 3h2y_A 302 AGDL 305 (368)
T ss_dssp BTTT
T ss_pred hCCc
Confidence 8753
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-06 Score=90.52 Aligned_cols=137 Identities=17% Similarity=0.176 Sum_probs=77.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-|++++|+.|+|||||++.|....... .|.+.-... +. ..+.....+.+..+..+-...++++|+||..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g~--~i-------~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNREE--KI-------PKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC----------------C-------CCCCSCCEEEESCC----CCEEEEECCCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCCc--cc-------CcceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 489999999999999999998543221 122210000 00 0011111122222211223468999999974
Q ss_pred CcH------HH--------HHHH--------------hhccCeEEEEEeCC-CCCchhHHHHHHHHhhcCCCEEEEEeCc
Q psy5021 89 DFT------IE--------VERS--------------LRVLDGAVIIICAS-SGIQPQTETVWFQSQKYKVPKMIFVNKM 139 (1021)
Q Consensus 89 ~f~------~~--------~~~~--------------l~~~D~~ilvvda~-~g~~~~t~~~~~~~~~~~~p~iiviNK~ 139 (1021)
+.. .. .... +..++++++++|.. +|..+...++++.+... +++|+++||+
T Consensus 72 ~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 72 DQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTG
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEecc
Confidence 311 01 1111 12257889999965 89999999999888776 9999999999
Q ss_pred CCCCCC-HHHHHHHHHHHh
Q psy5021 140 DRIGAN-YNNCIIDIKKKF 157 (1021)
Q Consensus 140 D~~~~~-~~~~~~~i~~~l 157 (1021)
|....+ .......+++.+
T Consensus 151 D~lt~~e~~~~k~~i~~~l 169 (270)
T 3sop_A 151 DTMTLEEKSEFKQRVRKEL 169 (270)
T ss_dssp GGSCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 987532 334444555444
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.4e-07 Score=99.93 Aligned_cols=87 Identities=21% Similarity=0.166 Sum_probs=51.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc-------------c
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN-------------K 74 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~-------------~ 74 (1021)
-..|+|+|.+|+|||||+++|....-.. ....+.|+..+...+.+... .
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~------------------~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~ 83 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASA------------------ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASK 83 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------------------------CCSEEEEECCCHHHHHHHHHHCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccc------------------cCCCccccCceeEEEEECCccceeeccccCcccc
Confidence 3569999999999999999996332100 11233455555444444310 0
Q ss_pred CceeEEEEcCCCCCCcHH-------HHHHHhhccCeEEEEEeCCC
Q psy5021 75 FKYMINIIDTPGHVDFTI-------EVERSLRVLDGAVIIICASS 112 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~-------~~~~~l~~~D~~ilvvda~~ 112 (1021)
....+.+|||||+..+.. .+..+++.+|++++|+|+.+
T Consensus 84 ~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 84 IPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 034699999999988665 56788999999999999974
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.26 E-value=6.9e-07 Score=97.84 Aligned_cols=103 Identities=22% Similarity=0.176 Sum_probs=73.5
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-c-HHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-M-PQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEME 792 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-~-~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~ 792 (1021)
.+.+||| +++|...+..+++++|++|+|+|+++.. . .....++..+...++| +++|+||+|+.+... . ++
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~p-iilv~NK~DL~~~~~-v----~~ 135 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELE-TVMVINKMDLYDEDD-L----RK 135 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHH-H----HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEeHHHcCCchh-H----HH
Confidence 7899999 9998887888899999999999999764 2 3334455556666888 889999999976322 1 22
Q ss_pred HHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 793 IRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 793 ~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
..++++.++. . .+++++||++|. |++++++.+.
T Consensus 136 ~~~~~~~~~~--~-~~~~~~SAktg~-----------gv~~lf~~l~ 168 (301)
T 1u0l_A 136 VRELEEIYSG--L-YPIVKTSAKTGM-----------GIEELKEYLK 168 (301)
T ss_dssp HHHHHHHHTT--T-SCEEECCTTTCT-----------THHHHHHHHS
T ss_pred HHHHHHHHhh--h-CcEEEEECCCCc-----------CHHHHHHHhc
Confidence 3333333321 1 468999999884 7777777664
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-06 Score=96.01 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=62.4
Q ss_pred hCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCC---------CC--chhHHHHHHHH
Q psy5021 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASS---------GI--QPQTETVWFQS 125 (1021)
Q Consensus 57 rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~---------g~--~~~t~~~~~~~ 125 (1021)
+..|+......+.++ +..+.+|||+|+..|...+..+++.++++|+|+|.++ .. .......|..+
T Consensus 145 ~~~TiGi~~~~~~~~----~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 145 RTKTTGIHEYDFVVK----DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp CCCCCSCEEEEEESS----SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred ccceeeeEEEEEEee----eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 445666555666666 7899999999999999999999999999999999972 11 12233444444
Q ss_pred hh----cCCCEEEEEeCcCCC
Q psy5021 126 QK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 126 ~~----~~~p~iiviNK~D~~ 142 (1021)
.. .++|+++|+||+|+.
T Consensus 221 ~~~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 221 MTNEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp HHCGGGTTSEEEEEEECHHHH
T ss_pred hhhhccCCCeEEEEEECchhh
Confidence 32 578999999999974
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.22 E-value=6.7e-07 Score=103.86 Aligned_cols=127 Identities=22% Similarity=0.204 Sum_probs=68.7
Q ss_pred cceeeeeeeeeccchhhhhhhccc------ccccccc-ccccccccCC-chhhhhcCceEeeeE-------------EEE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKV------SSEIYGG-EVRAFDTIDN-APEEKERGITISTSH-------------VEY 709 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~------~~~~~~~-~~~~~~~~d~-~~~e~~~G~Ti~~~~-------------~~~ 709 (1021)
...+.++|++|+||||++++|... ...+... ..+.. ..+. .......++.+.... ..+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~a-a~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAG-AFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSH-HHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchh-HHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 356778899999999999999832 2111111 00000 0000 011122333322110 001
Q ss_pred eeCCeEEEEEecCChhh----hHHHHHHH--hhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 710 ESENKHYAHVDCPGHAD----YIKNMITG--AAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 710 ~~~~~~i~liDtpG~~~----~~~~~~~~--~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
.+.+..+.||||||... +...+... +..+|.+++|+||..+.. ....+...... +|-.+||+||+|...
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHA 254 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCC
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCcccc
Confidence 22677899999999653 33333222 237899999999998753 23333333222 451267889999864
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-06 Score=95.03 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=50.6
Q ss_pred CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECC----------CC-CcHHHHHHHHHHHH----cCCCeEEEEEeec
Q psy5021 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAV----------DG-PMPQTREHILLARQ----VGVPNIVVFLNKA 777 (1021)
Q Consensus 713 ~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~----------~g-~~~qt~e~l~~~~~----~~ip~iIvviNK~ 777 (1021)
...+.+|||+|+++|.+.+..+++.+|++|+|+|.+ +. -+.....++..+.. .++| +|+++||+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiLvgNK~ 260 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNKF 260 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEECH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe-EEEEEECc
Confidence 467899999999999999999999999999999986 11 12333444444433 2566 99999999
Q ss_pred cccc
Q psy5021 778 DCVQ 781 (1021)
Q Consensus 778 Dl~~ 781 (1021)
|+.+
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9853
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-06 Score=93.59 Aligned_cols=82 Identities=11% Similarity=0.141 Sum_probs=61.3
Q ss_pred hCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCC-------CCC----chhHHHHHHHH
Q psy5021 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICAS-------SGI----QPQTETVWFQS 125 (1021)
Q Consensus 57 rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~-------~g~----~~~t~~~~~~~ 125 (1021)
|..|+......+.++ +..+.+|||+|+..|...+..+++.++++|+|+|.+ +.- .......|+..
T Consensus 151 r~~TiGi~~~~~~~~----~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQ----SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp CCCCCSEEEEEEEET----TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred cCceeeEEEEEEEee----ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 445555555566666 789999999999999999999999999999999776 211 11233444444
Q ss_pred hh----cCCCEEEEEeCcCCC
Q psy5021 126 QK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 126 ~~----~~~p~iiviNK~D~~ 142 (1021)
.. .++|+++|+||+|+.
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHH
T ss_pred hhhhccCCceEEEEEECchhh
Confidence 32 479999999999974
|
| >3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.8e-06 Score=86.91 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=70.3
Q ss_pred CCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC-
Q psy5021 294 NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK- 370 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 370 (1021)
.++||.+.|..++. +.|++..|||.+|++++||.|...+.+.+.+|++|+.. ..++++|.|||.+++ .|++
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~----~~~~~~A~aGd~V~l~L~gi~~ 76 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSD----DVETDTVAPGENLKIRLKGIEE 76 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSS----SSCBSEECTTSEEEEEEEESSS
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEEC----CEEeEEECCCCEEEEEEcCCCH
Confidence 36799999999876 57999999999999999999999988888899988543 367999999999999 7775
Q ss_pred -ccccCCeeccCCcc
Q psy5021 371 -ESSTGDTLCSLSEN 384 (1021)
Q Consensus 371 -~~~~gdtl~~~~~~ 384 (1021)
++..||+|++++.+
T Consensus 77 ~di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 77 EEILPGFILCDPNNL 91 (204)
T ss_dssp SCCCTTCEEBCSSSC
T ss_pred HHCccceEEECCCCC
Confidence 58999999987643
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-06 Score=98.85 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=59.2
Q ss_pred eeeeeeeEEEeecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCC----------CCc-hhHHHHHHHHhh-
Q psy5021 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASS----------GIQ-PQTETVWFQSQK- 127 (1021)
Q Consensus 60 Ti~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~----------g~~-~~t~~~~~~~~~- 127 (1021)
|+......+.+. +..+.+|||+|+..|...+..+++.++++|+|+|.++ .-. ......|..+..
T Consensus 204 TiGi~~~~~~~~----~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFETKFQVD----KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEEEEEEET----TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEEEEeecC----CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 444444455555 7899999999999999999999999999999999987 211 123334444432
Q ss_pred ---cCCCEEEEEeCcCCC
Q psy5021 128 ---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 128 ---~~~p~iiviNK~D~~ 142 (1021)
.++|+++|+||+|+.
T Consensus 280 ~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLL 297 (402)
T ss_dssp TTCSSCCEEEEEECHHHH
T ss_pred ccCCCCeEEEEEEChhhh
Confidence 468999999999973
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.08 E-value=7.4e-05 Score=84.89 Aligned_cols=150 Identities=14% Similarity=0.024 Sum_probs=75.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHc---CCCcccccccCC--cccccChHHHhhhCceeeeeeeEEE--------e-ec
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYS---GSSHKIGEVHHG--TTITDWMQQEQERGITITSASVSIF--------W-EV 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~---~~~~~~g~~~~~--~~~~d~~~~e~~rgiTi~~~~~~~~--------~-~~ 72 (1021)
+.+.|+++|..|+||||++..|.... |.-...-..+.. ..+..........|+.+........ . ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999997432 111000000000 0000000111222333221100000 0 00
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHH------HhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCH
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVER------SLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANY 146 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~------~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~ 146 (1021)
...++.+.||||||.......... ....+|.+++|+||..|... ....+.....--+..+++||+|... ..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD~~~-~g 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLDGSA-KG 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCSSCS-SH
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCCCcc-cc
Confidence 113578999999996544332222 23357999999999986432 2233333333345568899999853 22
Q ss_pred HHHHHHHHHHhCCc
Q psy5021 147 NNCIIDIKKKFNCI 160 (1021)
Q Consensus 147 ~~~~~~i~~~l~~~ 160 (1021)
. ...++....+.+
T Consensus 256 G-~~ls~~~~~g~P 268 (443)
T 3dm5_A 256 G-GALSAVAATGAP 268 (443)
T ss_dssp H-HHHHHHHTTCCC
T ss_pred c-HHHHHHHHHCCC
Confidence 2 233444445543
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.1e-05 Score=86.70 Aligned_cols=143 Identities=18% Similarity=0.188 Sum_probs=80.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh----
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD---- 726 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~---- 726 (1021)
.++.|++|.+|+|||||+|.|++...... +...... .+.......++++.-... ..-...++++|+||...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~-G~i~~~g-~~i~~~~~~~~i~~v~q~---~~~~~~ltv~d~~~~g~~~~~ 76 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRK-ASSWNRE-EKIPKTVEIKAIGHVIEE---GGVKMKLTVIDTPGFGDQINN 76 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CCSBC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCC-CccccCC-cccCcceeeeeeEEEeec---CCCcCCceEEechhhhhhccc
Confidence 36789999999999999999997532211 1110000 000000011111111110 01123679999999532
Q ss_pred ---------hHH-----HHHHHh----------hhCCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 727 ---------YIK-----NMITGA----------AQMDGAILVCSAV-DGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 727 ---------~~~-----~~~~~~----------~~aD~ailVvDa~-~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
++. .....+ ..++++++++|.. +|..+...+.+..+... ++ +|+++||+|...
T Consensus 77 ~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~-vI~Vi~K~D~lt 154 (270)
T 3sop_A 77 ENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VN-IIPVIAKADTMT 154 (270)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SE-EEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-Cc-EEEEEeccccCC
Confidence 111 111111 2368999999954 78888888888877766 66 999999999887
Q ss_pred hhhHHHHHHHHHHHhhhccc
Q psy5021 782 DKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 782 ~~~~~~~~~~~~~~~l~~~~ 801 (1021)
..+ ....+..+.+.++..+
T Consensus 155 ~~e-~~~~k~~i~~~l~~~~ 173 (270)
T 3sop_A 155 LEE-KSEFKQRVRKELEVNG 173 (270)
T ss_dssp HHH-HHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHHcC
Confidence 433 4445566666555554
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.2e-06 Score=92.50 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=51.3
Q ss_pred eEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhH-HHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 78 MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQT-ETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 78 ~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t-~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+.+||| +..|...+..+++.+|++|+|+|+++.. .... ...+..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899999 9999888889999999999999999764 3333 333344556789999999999985
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3e-06 Score=88.56 Aligned_cols=101 Identities=13% Similarity=0.141 Sum_probs=58.6
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchh-hHHHHHHHHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDK-ELLDLVEMEI 793 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~-~~~~~~~~~~ 793 (1021)
.+.++|++|.-.- .. ..-...+..+.|+|+..+..... . .....+.| .++|+||+|+.+.. ...+. +
T Consensus 120 d~~~id~~g~i~~-~~--s~~~~~~~~~~v~~~~~~~~~~~-~---~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~----~ 187 (226)
T 2hf9_A 120 DLLFIENVGNLIC-PA--DFDLGTHKRIVVISTTEGDDTIE-K---HPGIMKTA-DLIVINKIDLADAVGADIKK----M 187 (226)
T ss_dssp SEEEEECCSCSSG-GG--GCCCSCSEEEEEEEGGGCTTTTT-T---CHHHHTTC-SEEEEECGGGHHHHTCCHHH----H
T ss_pred CEEEEeCCCCccC-cc--hhhhccCcEEEEEecCcchhhHh-h---hhhHhhcC-CEEEEeccccCchhHHHHHH----H
Confidence 6888999993111 00 01124577888899754332111 0 11224677 77889999986521 11222 3
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
...++.++ ...+++++||++| .+++++++.|.+.
T Consensus 188 ~~~~~~~~---~~~~~~~~Sa~~g-----------~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 188 ENDAKRIN---PDAEVVLLSLKTM-----------EGFDKVLEFIEKS 221 (226)
T ss_dssp HHHHHHHC---TTSEEEECCTTTC-----------TTHHHHHHHHHHH
T ss_pred HHHHHHhC---CCCeEEEEEecCC-----------CCHHHHHHHHHHH
Confidence 33333322 1358999999987 3889999888653
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.05 E-value=8.4e-06 Score=91.66 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=59.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc----------c--
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN----------K-- 74 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~----------~-- 74 (1021)
+-..++|+|++|+|||||+++|.....+... ...+.|+..+...+.+... .
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-----------------~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~ 81 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-----------------NYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-----------------CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccc-----------------CCCceeecceeeeeeeCCcchhhhhhhccccc
Confidence 3458999999999999999999753321111 1123344444444444310 0
Q ss_pred -CceeEEEEcCCCCCC-------cHHHHHHHhhccCeEEEEEeCCC
Q psy5021 75 -FKYMINIIDTPGHVD-------FTIEVERSLRVLDGAVIIICASS 112 (1021)
Q Consensus 75 -~~~~i~liDtPG~~~-------f~~~~~~~l~~~D~~ilvvda~~ 112 (1021)
-...+.++||||... +.......++.+|+++.|+|+.+
T Consensus 82 ~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 024689999999654 45577888899999999999975
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=80.86 Aligned_cols=59 Identities=8% Similarity=0.150 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH----HHHh----hcCCCEEEEEeCc-CCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW----FQSQ----KYKVPKMIFVNKM-DRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~----~~~~----~~~~p~iiviNK~-D~~~~ 144 (1021)
|+..+...|..++..+|++|+|||+++.-......-+ +.+. ..++|++|+.||. |++++
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A 178 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 178 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence 7888888999999999999999999875222233222 2221 1578999999995 77654
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.6e-06 Score=92.12 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=51.0
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCC---------CC--chhHHHHHHHHhh----cCCCEEEEEeCc
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASS---------GI--QPQTETVWFQSQK----YKVPKMIFVNKM 139 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~---------g~--~~~t~~~~~~~~~----~~~p~iiviNK~ 139 (1021)
....+.+|||+|+..|...+..+++.++++|+|+|.++ .. .......|+.... .++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 36889999999999999999999999999999999871 11 1223334444432 479999999999
Q ss_pred CCC
Q psy5021 140 DRI 142 (1021)
Q Consensus 140 D~~ 142 (1021)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 973
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.6e-05 Score=77.26 Aligned_cols=105 Identities=12% Similarity=0.039 Sum_probs=64.8
Q ss_pred cCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHH----HHH-H---cCCCeEEEEEeec-cccchhhHHHHHHH
Q psy5021 721 CPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHIL----LAR-Q---VGVPNIVVFLNKA-DCVQDKELLDLVEM 791 (1021)
Q Consensus 721 tpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~----~~~-~---~~ip~iIvviNK~-Dl~~~~~~~~~~~~ 791 (1021)
..|+.++...|..|+.++|++|+|||+++......++-+. ++. . .++| ++|+.||. |+.+.-. ..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Ams-~~---- 182 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMP-CF---- 182 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBCC-HH----
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCCC-HH----
Confidence 4489999999999999999999999998764333444331 121 1 3678 88899996 6754211 12
Q ss_pred HHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 792 EIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 792 ~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++.+.|..-... ....+.+|||++| +|+.+-+++|.+.+.
T Consensus 183 EI~e~L~L~~l~-R~W~Iq~csA~TG-----------eGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 183 YLAHELHLNLLN-HPWLVQDTEAETL-----------TGFLNGIEWILEEVE 222 (227)
T ss_dssp HHHHHTTGGGGC-SCEEEEEEETTTC-----------TTHHHHHHHHTTTTT
T ss_pred HHHHHcCCcCCC-CCEEEEEeECCCC-----------cCHHHHHHHHHHHHH
Confidence 233333222222 4678999999988 488999999987653
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=4.2e-05 Score=78.41 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=86.9
Q ss_pred EEEEEE-eCCCCCHHHHHHHHHHH---cCCCcccccccCCcccccChHHHhhhCceeeeeee-EE--EeecccCceeEEE
Q psy5021 9 RNIGII-AHVDAGKTTTTERILFY---SGSSHKIGEVHHGTTITDWMQQEQERGITITSASV-SI--FWEVNKFKYMINI 81 (1021)
Q Consensus 9 rni~ii-G~~~~GKTTL~~~Ll~~---~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~-~~--~~~~~~~~~~i~l 81 (1021)
+.|+|. +..|+||||++-.|... .|.-.-.-+.+.+....+|.... ..+..+-.... .+ .+..-...|.+.+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~yD~vi 80 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAG-KAAFDVFTAASEKDVYGIRKDLADYDFAI 80 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTS-CCSSEEEECCSHHHHHTHHHHTTTSSEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcC-CCCCcEEecCcHHHHHHHHHhcCCCCEEE
Confidence 567777 67889999999988632 23211111223333333332211 11111111000 00 0000023588999
Q ss_pred EcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhc-----CCCEEEEEeCcCCCCCCHHHHHHHHHHH
Q psy5021 82 IDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY-----KVPKMIFVNKMDRIGANYNNCIIDIKKK 156 (1021)
Q Consensus 82 iDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~-----~~p~iiviNK~D~~~~~~~~~~~~i~~~ 156 (1021)
||||+.. ...+..++..+|.+|+++.+.... ..+...++.+... ++++.+++|++|.......+..+.+++
T Consensus 81 iD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~l~~- 156 (206)
T 4dzz_A 81 VDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKD- 156 (206)
T ss_dssp EECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHHHHHHH-
T ss_pred EECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHHHHHHH-
Confidence 9999987 467788899999999999998877 7777887777654 467888999999643333444444433
Q ss_pred hCCce
Q psy5021 157 FNCIV 161 (1021)
Q Consensus 157 l~~~~ 161 (1021)
++.+.
T Consensus 157 ~~~~v 161 (206)
T 4dzz_A 157 TGVKA 161 (206)
T ss_dssp HTCCB
T ss_pred cCCce
Confidence 55443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=8.7e-05 Score=84.00 Aligned_cols=166 Identities=17% Similarity=0.110 Sum_probs=93.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhh---h
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHAD---Y 727 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~---~ 727 (1021)
...|++|.+|+|||||+|.|++.... ..+... .+.....+ .+ ..+.... ..++++|+||... -
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p-~~GsI~----~~g~~~t~-~~-------~v~q~~~~~~ltv~D~~g~~~~~~~ 136 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNE-EEGAAK----TGVVEVTM-ER-------HPYKHPNIPNVVFWDLPGIGSTNFP 136 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTT-STTSCC----CCC----C-CC-------EEEECSSCTTEEEEECCCGGGSSCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc-cCceEE----ECCeecce-eE-------EeccccccCCeeehHhhcccchHHH
Confidence 46689999999999999999984321 111111 11111100 11 1122222 3689999999532 1
Q ss_pred HHHHHHH--hhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-h-------hhHHHHHHHHHHHhh
Q psy5021 728 IKNMITG--AAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-D-------KELLDLVEMEIRELL 797 (1021)
Q Consensus 728 ~~~~~~~--~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~-------~~~~~~~~~~~~~~l 797 (1021)
....+.. +...|..++ +|... .+.|....+..+...+.| +++|+||.|+.- + ....+.+.+.+.++.
T Consensus 137 ~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p-~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 137 PDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKE-FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp HHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCC-eEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 2233332 344566655 77754 356666666777777887 899999999751 1 111223333444432
Q ss_pred ----hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 798 ----TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 798 ----~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
+..|.. ...++++|+..- ..++++.|.+.+.+.+|.
T Consensus 214 ~~~l~~~g~~--~~~iiliSsh~l---------~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 214 VNTFRENGIA--EPPIFLLSNKNV---------CHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHTTCS--SCCEEECCTTCT---------TSTTHHHHHHHHHHHSCG
T ss_pred HHHHHhcCCC--CCcEEEEecCcC---------CccCHHHHHHHHHHhCcc
Confidence 222221 235788999532 113688899988877754
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.6e-05 Score=85.95 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=43.9
Q ss_pred EcCCCCC-CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 82 IDTPGHV-DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 82 iDtPG~~-~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
=+.|||. ....++...+..+|+++.|+||.++.......+-+.+ .++|+++++||+|+..
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC
Confidence 3579996 6678899999999999999999988766533333333 5899999999999863
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.84 E-value=1.4e-05 Score=89.77 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=57.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccc-cccccccccccccCCchhhhhcCceEeeeEEEEeeCC----------------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSS-EIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN---------------- 713 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~-~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~---------------- 713 (1021)
....|++|.+|+|||||+|+|++... ...+ ..++|++.....+...+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~----------------~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v 83 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPAN----------------YPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV 83 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTC----------------CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccC----------------CCceeecceeeeeeeCCcchhhhhhhccccccc
Confidence 56899999999999999999998542 1111 12334444433333332
Q ss_pred -eEEEEEecCChhh-------hHHHHHHHhhhCCEEEEEEECCC
Q psy5021 714 -KHYAHVDCPGHAD-------YIKNMITGAAQMDGAILVCSAVD 749 (1021)
Q Consensus 714 -~~i~liDtpG~~~-------~~~~~~~~~~~aD~ailVvDa~~ 749 (1021)
..+.+||+||... +.......++.+|.+++|+|+.+
T Consensus 84 ~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 84 PAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4678999999543 34456777899999999999875
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.83 E-value=3.7e-05 Score=83.04 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=61.9
Q ss_pred EEecCChh-hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh
Q psy5021 718 HVDCPGHA-DYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL 796 (1021)
Q Consensus 718 liDtpG~~-~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~ 796 (1021)
+-+.|||. +..+.+...+.++|++++|+||+++......+.-.++ .++| .++|+||+|+.+.. .. +...++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~~~-~~----~~~~~~ 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKP-RIMLLNKADKADAA-VT----QQWKEH 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSC-EEEEEECGGGSCHH-HH----HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCC-EEEEEECcccCCHH-HH----HHHHHH
Confidence 44689997 5677788889999999999999987654322211221 3566 88899999998622 11 223334
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++..+ .+++++||.++. ++.+|++.+.+.
T Consensus 75 ~~~~g-----~~~i~iSA~~~~-----------gi~~L~~~i~~~ 103 (282)
T 1puj_A 75 FENQG-----IRSLSINSVNGQ-----------GLNQIVPASKEI 103 (282)
T ss_dssp HHTTT-----CCEEECCTTTCT-----------TGGGHHHHHHHH
T ss_pred HHhcC-----CcEEEEECCCcc-----------cHHHHHHHHHHH
Confidence 44333 368899999763 566666655543
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.79 E-value=2.9e-05 Score=84.34 Aligned_cols=148 Identities=18% Similarity=0.124 Sum_probs=79.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHc---CCCcccccccCC-cccccCh-HHHhhhCceeeeeee-----EEEeec----c
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYS---GSSHKIGEVHHG-TTITDWM-QQEQERGITITSASV-----SIFWEV----N 73 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~---~~~~~~g~~~~~-~~~~d~~-~~e~~rgiTi~~~~~-----~~~~~~----~ 73 (1021)
.+.|+++|+.|+||||++..|.... +.-....+.+.. ....+.. ......|+.+..... .+.... .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999987432 211111111110 0000000 011123444332210 000000 1
Q ss_pred cCceeEEEEcCCCCCC--cHHHHH------HHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 74 KFKYMINIIDTPGHVD--FTIEVE------RSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 74 ~~~~~i~liDtPG~~~--f~~~~~------~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
..++.+.+|||||... ...... ..+..+|.+++|+|+..+ .......+.... .+| ..+++||+|.. .
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~-~ 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT-A 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC-T
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC-c
Confidence 1378899999999877 433332 345578999999999865 223333333332 477 67789999975 3
Q ss_pred CHHHHHHHHHHHhCCc
Q psy5021 145 NYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 145 ~~~~~~~~i~~~l~~~ 160 (1021)
... ...++...++.+
T Consensus 254 ~~g-~~~~~~~~~~~p 268 (297)
T 1j8m_F 254 KGG-GALSAVAATGAT 268 (297)
T ss_dssp THH-HHHHHHHTTTCC
T ss_pred chH-HHHHHHHHHCcC
Confidence 333 333455555543
|
| >1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=4e-05 Score=66.59 Aligned_cols=81 Identities=15% Similarity=0.360 Sum_probs=71.7
Q ss_pred eEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCC-eeEEEEEEEEecccccceeccCceEEEEecccCccCcccc
Q psy5021 854 LMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQ-TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERG 932 (1021)
Q Consensus 854 ~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~-~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 932 (1021)
...|.++|+++..|+|+..+|.+|.++.+..+.+.-.+. -...++.|+..+++++.++.+|..||+.+.+ ..|++.|
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~--~~dik~G 85 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKN--FNDIKEG 85 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTT--CSSCSSC
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcC--cCCCCCC
Confidence 456788999999999999999999999999999985554 3467899999999999999999999999987 5589999
Q ss_pred eEEe
Q psy5021 933 QVLA 936 (1021)
Q Consensus 933 ~vl~ 936 (1021)
|+|-
T Consensus 86 D~Ie 89 (99)
T 1d1n_A 86 DVIE 89 (99)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9984
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.69 E-value=3e-05 Score=84.71 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=42.3
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCC-chhH-HHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGI-QPQT-ETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t-~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+..|......+++.+|++++|+|+++.. .... ...+..+...++|+++|+||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 4555555556899999999999999764 4433 344455667899999999999985
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.67 E-value=5.8e-05 Score=84.85 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=66.9
Q ss_pred EecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 719 VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 719 iDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
++++ +++|.+........+|++++|+|+++.......+....+ .+.| +++|+||+|+.+.+...+.+.+.+..+++
T Consensus 54 v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~p-iilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 54 VPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNP-ILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp ------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSC-EEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCC-EEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 4444 788988888888999999999999985432111111111 2566 88999999998643223444455566666
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..|+.. ..++++||++|. ++++|++.+.+
T Consensus 130 ~~g~~~--~~v~~iSA~~g~-----------gi~~L~~~I~~ 158 (369)
T 3ec1_A 130 ELGLCP--VDVCLVSAAKGI-----------GMAKVMEAINR 158 (369)
T ss_dssp TTTCCC--SEEEECBTTTTB-----------THHHHHHHHHH
T ss_pred HcCCCc--ccEEEEECCCCC-----------CHHHHHHHHHh
Confidence 666531 368899999874 66666666654
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00012 Score=77.15 Aligned_cols=61 Identities=8% Similarity=0.122 Sum_probs=42.8
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH----HHHHH---h-hcCCCEEEEEeC-cCCCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET----VWFQS---Q-KYKVPKMIFVNK-MDRIGA 144 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~----~~~~~---~-~~~~p~iiviNK-~D~~~~ 144 (1021)
..|+..+...+..++..+|++|+|||+++.-.....+ +...+ . ..+.|++|+.|| -|++++
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 3588999999999999999999999998753211222 11222 2 268999999997 588765
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00013 Score=79.76 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=57.1
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCC-cH-HHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGP-MP-QTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~-qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
+++|......+++++|.+++|+|++++. .. ....++..+...++| +|+|+||+|+.++.+ .+. .++..++.+..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~~~-v~~-~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVE-PVIVFNKIDLLNEEE-KKE-LERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHH-HHH-HHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCC-EEEEEEcccCCCccc-cHH-HHHHHHHHHHCC
Confidence 4444333334689999999999999764 33 334566666777888 788999999986321 111 233344444444
Q ss_pred cCCCceEEEEecccccc
Q psy5021 802 FDGENTKIVIGSALLAL 818 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~ 818 (1021)
.+++++||++|.
T Consensus 143 -----~~~~~~SA~~g~ 154 (302)
T 2yv5_A 143 -----YDVLKVSAKTGE 154 (302)
T ss_dssp -----CEEEECCTTTCT
T ss_pred -----CeEEEEECCCCC
Confidence 478999999873
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=4.6e-05 Score=89.89 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=62.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec---ccCceeEEEE
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV---NKFKYMINII 82 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~---~~~~~~i~li 82 (1021)
.+...|+|+|.+|+|||||+|+|+.....+...+ +. ++.|.. ...|.. ...+..+.|+
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~------tt---------~~~T~g----i~~~~~~~~~~~~~~i~Li 96 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGS------TV---------QSHTKG----IWMWCVPHPKKPGHILVLL 96 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCC------SS---------SCCCCS----EEEEEEECSSSTTCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCC------CC---------CCceeE----EEEeecccccCCCceEEEe
Confidence 3567899999999999999999975432221111 10 011111 112210 1235789999
Q ss_pred cCCCCCCcHH------HHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhc
Q psy5021 83 DTPGHVDFTI------EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128 (1021)
Q Consensus 83 DtPG~~~f~~------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~ 128 (1021)
||||..+... ....++...-..++|+|+..++..+...++..+...
T Consensus 97 DTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 97 DTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp EECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTH
T ss_pred cCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHH
Confidence 9999865322 122223332233788899888988888777766443
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.62 E-value=5.7e-05 Score=84.86 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=66.1
Q ss_pred ChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH-c-CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 723 GHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQ-V-GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 723 G~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~-~-~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
-.++|.+.+....+.+|++++|+|+++.. ..+...+.. . +.| +++|+||+|+.+.....+.+.+.+..+++..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p-~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNK-VLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSC-EEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCc-EEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 45788888888888899999999998721 112122222 2 567 8899999999763322334444555556666
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
|+. ..+++.+||++|. |+++|++.|.+
T Consensus 130 g~~--~~~v~~iSA~~g~-----------gi~~L~~~l~~ 156 (368)
T 3h2y_A 130 GLK--PEDVFLISAAKGQ-----------GIAELADAIEY 156 (368)
T ss_dssp TCC--CSEEEECCTTTCT-----------THHHHHHHHHH
T ss_pred CCC--cccEEEEeCCCCc-----------CHHHHHhhhhh
Confidence 653 1368899999873 67777777654
|
| >2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00017 Score=64.99 Aligned_cols=81 Identities=16% Similarity=0.311 Sum_probs=71.4
Q ss_pred eEEEEEEEeeCCcee---EEEEEEEEEEeeCCCEEEEeecCC-eeEEEEEEEEecccccceeccCceEEEEecccCcc-C
Q psy5021 854 LMPIEDVFSISGRGT---VVTGKIERGIVKNGEEIEIVGYKQ-TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKRE-E 928 (1021)
Q Consensus 854 ~~~I~~~~~v~g~G~---Vv~G~V~~G~l~~gd~v~i~p~~~-~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~-~ 928 (1021)
+..|.++|+++..|+ |+..+|..|.|+.+..+.+.-.+. -...++.|+..+++++.++.+|..||+.|.+ .. |
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~--fniD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDE--EKVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSC--TTSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEcc--CCCC
Confidence 677899999998887 999999999999999999985443 3356899999999999999999999999986 56 8
Q ss_pred cccceEEe
Q psy5021 929 VERGQVLA 936 (1021)
Q Consensus 929 i~~G~vl~ 936 (1021)
++.||+|-
T Consensus 90 ik~GDiIE 97 (120)
T 2crv_A 90 FKPGDQVI 97 (120)
T ss_dssp CCTTEEEE
T ss_pred CCCCCEEE
Confidence 99999994
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00022 Score=75.23 Aligned_cols=105 Identities=12% Similarity=0.026 Sum_probs=68.7
Q ss_pred cCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHH----HHH---HH-cCCCeEEEEEee-ccccchhhHHHHHHH
Q psy5021 721 CPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHI----LLA---RQ-VGVPNIVVFLNK-ADCVQDKELLDLVEM 791 (1021)
Q Consensus 721 tpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l----~~~---~~-~~ip~iIvviNK-~Dl~~~~~~~~~~~~ 791 (1021)
..|+.++...+..|+.++|++|+|||+++......++-+ .++ .. .++| ++|+.|| .|+.+.-. ..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Ams-~~---- 267 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMP-CF---- 267 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBCC-HH----
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCCC-HH----
Confidence 568999999999999999999999999886542233321 222 11 4788 8889997 58765211 12
Q ss_pred HHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 792 EIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 792 ~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++.+.+..-... ....+.++||.+| +|+.+-+++|.+.+.
T Consensus 268 EI~e~L~L~~l~-r~W~Iq~csA~tG-----------eGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 268 YLAHELHLNLLN-HPWLVQDTEAETL-----------TGFLNGIEWILEEVE 307 (312)
T ss_dssp HHHHHTTGGGGC-SCEEEEEEETTTC-----------TTHHHHHHHHHHHSC
T ss_pred HHHHHcCCccCC-CcEEEEecccCCC-----------cCHHHHHHHHHHHHH
Confidence 233333222222 4578999999988 488888888877553
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=7.4e-05 Score=79.70 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=59.2
Q ss_pred cCChhhhH-HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 721 CPGHADYI-KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 721 tpG~~~~~-~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
-|||.... +.+...+.++|++++|+||+++......+ +.++ ++| .++|+||+|+++.. .. ++..++++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l~ll---~k~-~iivlNK~DL~~~~-~~----~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-VDFS---RKE-TIILLNKVDIADEK-TT----KKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-SCCT---TSE-EEEEEECGGGSCHH-HH----HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-HHhc---CCC-cEEEEECccCCCHH-HH----HHHHHHHHH
Confidence 48987654 56778889999999999999876543211 1122 777 78899999998732 11 222334444
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.|+ ++ ++||.++. +++.|++.+.+.
T Consensus 74 ~g~-----~v-~iSa~~~~-----------gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGK-----RV-ITTHKGEP-----------RKVLLKKLSFDR 98 (262)
T ss_dssp TTC-----CE-EECCTTSC-----------HHHHHHHHCCCT
T ss_pred cCC-----eE-EEECCCCc-----------CHHHHHHHHHHh
Confidence 443 45 88999773 788888877653
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00014 Score=74.93 Aligned_cols=141 Identities=17% Similarity=0.055 Sum_probs=83.0
Q ss_pred EEEE-eCCCCCHHHHHHHHHHH---cCCCcccccccCCcccccChHHHhhhCceeeeeeeEE-EeecccCceeEEEEcCC
Q psy5021 11 IGII-AHVDAGKTTTTERILFY---SGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI-FWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 11 i~ii-G~~~~GKTTL~~~Ll~~---~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~-~~~~~~~~~~i~liDtP 85 (1021)
|+|. +..|+||||++-.|... .| -.-.-+.+......+|... ..... ..+.- ....-...|.+.+||||
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~---~~l~~--~vi~~~~l~~l~~~yD~viiD~p 76 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR---GSLPF--KVVDERQAAKYAPKYQNIVIDTQ 76 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH---SCCSS--EEEEGGGHHHHGGGCSEEEEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC---CCCCc--ceeCHHHHHHhhhcCCEEEEeCC
Confidence 5554 77899999999988633 22 1111112233233333221 00100 00000 00001236889999999
Q ss_pred CC-CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh-cCCCEEEEEeCcCCCC-CCHHHHHHHHHHHhCCc
Q psy5021 86 GH-VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK-YKVPKMIFVNKMDRIG-ANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 86 G~-~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~-~~~p~iiviNK~D~~~-~~~~~~~~~i~~~l~~~ 160 (1021)
+. ... .+..++..+|.+|+++.+.......+...++.+.. .+.+..+++|+.|... ....+..+.+++ ++..
T Consensus 77 ~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~-~g~~ 151 (209)
T 3cwq_A 77 ARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTT-AGLP 151 (209)
T ss_dssp CCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHH-TTCC
T ss_pred CCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHH-cCCc
Confidence 97 553 56678899999999999876555566666776665 3788889999999765 334444555554 6544
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=8.8e-05 Score=79.12 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=39.1
Q ss_pred CCCCCc-HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDF-TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f-~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|||... ..++...+..+|.++.|+||.++.......+ . .. ++|+++++||+|+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~-ll--~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-D-FS--RKETIILLNKVDIAD 60 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-C-CT--TSEEEEEEECGGGSC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-H-hc--CCCcEEEEECccCCC
Confidence 899654 4688999999999999999998765543221 1 12 899999999999863
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=8.1e-05 Score=87.84 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=58.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEE---eeCCeEEEEEecCChhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEY---ESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~---~~~~~~i~liDtpG~~~ 726 (1021)
+...++++|.+|+|||||+|+|++...... + .... ++.|.....+.. ...+..+.|+||||..+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~--------~-~~tt----~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFS--------L-GSTV----QSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSC--------C-CCSS----SCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccc--------c-CCCC----CCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 346788999999999999999998542110 0 0000 112221111111 23467899999999654
Q ss_pred hHH------HHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHHHHc
Q psy5021 727 YIK------NMITGAA--QMDGAILVCSAVDGPMPQTREHILLARQV 765 (1021)
Q Consensus 727 ~~~------~~~~~~~--~aD~ailVvDa~~g~~~qt~e~l~~~~~~ 765 (1021)
..+ ..+..+. .++ ++|+|+..++..+...++.++...
T Consensus 104 ~~~~~~~~~~~~fala~llss--~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 104 VEKGDNQNDSWIFALAVLLSS--TFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp GGGCCCTTHHHHHHHHHHHCS--EEEEEEESCSSHHHHHTTHHHHTH
T ss_pred ccccchhHHHHHHHHHHHhcC--eEEEECCCCccHHHHHHHHHHHHH
Confidence 321 1221122 233 678888888888877766654443
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0011 Score=70.60 Aligned_cols=92 Identities=11% Similarity=-0.024 Sum_probs=63.5
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCC------CCH-
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIG------ANY- 146 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~------~~~- 146 (1021)
..|.+.+||||+..........++..+|.+|+|+.+.......+...++.+...++|++ +++|+.|... ...
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 206 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIF 206 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTT
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccc
Confidence 36889999999976643333334457999999999887766677778888888899988 8899987411 000
Q ss_pred -HHHHHHHHHHhCCceeeeeee
Q psy5021 147 -NNCIIDIKKKFNCIVLPINFN 167 (1021)
Q Consensus 147 -~~~~~~i~~~l~~~~~~~~~p 167 (1021)
...++++.+.++..... .+|
T Consensus 207 ~~~~~~~~~~~~g~~~~~-~Ip 227 (262)
T 2ph1_A 207 GEGKGESLAKKYNIGFFT-SIP 227 (262)
T ss_dssp CCCCHHHHHHHTTCSEEE-ECC
T ss_pred cccHHHHHHHHcCCCeEE-Eee
Confidence 22356677777765433 344
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00058 Score=77.59 Aligned_cols=126 Identities=20% Similarity=0.172 Sum_probs=66.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCc---------hhhhhcCceEeeeEE-------------E
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNA---------PEEKERGITISTSHV-------------E 708 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~---------~~e~~~G~Ti~~~~~-------------~ 708 (1021)
...+.++|.+++||||++..|.......+. ..... ..|.. ......|+.+..... .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~-kVllv-~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~ 177 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGY-KVGVV-CSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDY 177 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEE-ECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCC-eEEEE-eCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHH
Confidence 456788889999999999999742211111 00000 00110 111222332211100 0
Q ss_pred EeeCCeEEEEEecCChhh----hHHHH--HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 709 YESENKHYAHVDCPGHAD----YIKNM--ITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 709 ~~~~~~~i~liDtpG~~~----~~~~~--~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
+...+..+.|+||||... ....+ +..+..+|.++||+||..|.. ....+..... .++...|++||+|...
T Consensus 178 a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~-~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 178 FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKE-ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHH-SCTTEEEEEECCSSCS
T ss_pred HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHh-hCCCeEEEEECCCCcc
Confidence 112457899999999432 22221 223456899999999987532 2233332222 3343567889999864
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0018 Score=77.64 Aligned_cols=68 Identities=10% Similarity=0.150 Sum_probs=41.4
Q ss_pred eeEEEEcCCCCCCc---------HHHH----HHHhhc-cCeEEEEEeCCCCCc-hhHHHHHHHHhhcCCCEEEEEeCcCC
Q psy5021 77 YMINIIDTPGHVDF---------TIEV----ERSLRV-LDGAVIIICASSGIQ-PQTETVWFQSQKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 77 ~~i~liDtPG~~~f---------~~~~----~~~l~~-~D~~ilvvda~~g~~-~~t~~~~~~~~~~~~p~iiviNK~D~ 141 (1021)
..+.++|.||...- ...+ ..++.. ...+++++++..... .....+++.+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 46999999985331 1222 222333 256667777665433 23355666666778999999999998
Q ss_pred CCC
Q psy5021 142 IGA 144 (1021)
Q Consensus 142 ~~~ 144 (1021)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 743
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00086 Score=76.59 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=41.6
Q ss_pred CCeEEEEEecCChhhh----HHHHHHH--hhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCC-CeEEEEEeeccccc
Q psy5021 712 ENKHYAHVDCPGHADY----IKNMITG--AAQMDGAILVCSAVDGPMPQTREHILLARQVGV-PNIVVFLNKADCVQ 781 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~----~~~~~~~--~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~i-p~iIvviNK~Dl~~ 781 (1021)
.+..+.|+||||.... ...+... +..+|.+++|+||..|. .....+... ..++ +...+++||+|...
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~-~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAF-KEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHH-HTTSCSCEEEEEECSSSCS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHH-hhcccCCeEEEEeCCCCcc
Confidence 5678999999996543 2222111 12589999999998753 222222221 2235 54678899999754
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00096 Score=73.34 Aligned_cols=148 Identities=16% Similarity=0.067 Sum_probs=73.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc-CCcccccChHHH------hhhCceeeeeeeEEE-----eec--
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQE------QERGITITSASVSIF-----WEV-- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~-~~~~~~d~~~~e------~~rgiTi~~~~~~~~-----~~~-- 72 (1021)
+-..++++|+.|+|||||+..|...-.. ..|++. .+.........| +..|+.+......+. +..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 3567999999999999999998743210 011110 000000011111 223433322110000 000
Q ss_pred --ccCceeEEEEcCCCCCCcH----HHHHHH--hhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 73 --NKFKYMINIIDTPGHVDFT----IEVERS--LRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 73 --~~~~~~i~liDtPG~~~f~----~~~~~~--l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
...++.+.++||+|..... .+.... .-..|-.++++|+..+. +.....+...+.--...+++||+|.. +
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~-a 282 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD-A 282 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC-S
T ss_pred HHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc-c
Confidence 0124567789999974432 222211 12468999999988762 33333333332222347889999973 3
Q ss_pred CHHHHHHHHHHHhCCc
Q psy5021 145 NYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 145 ~~~~~~~~i~~~l~~~ 160 (1021)
..... -++...++.+
T Consensus 283 ~~G~~-l~~~~~~~~p 297 (328)
T 3e70_C 283 RGGAA-LSISYVIDAP 297 (328)
T ss_dssp CCHHH-HHHHHHHTCC
T ss_pred chhHH-HHHHHHHCCC
Confidence 33332 2344445543
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00083 Score=70.92 Aligned_cols=86 Identities=10% Similarity=-0.031 Sum_probs=61.1
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCHHHHHHHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANYNNCIIDI 153 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i 153 (1021)
..|.+.+||||+.... .+..++..+|.+|+|+++..........+.+.+...+++ +.+++||.+. ....+++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~~ 202 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKLI 202 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHHH
Confidence 4788999999987654 567788999999999998654444555566666666765 5678999983 2346677
Q ss_pred HHHhCCceeeeeee
Q psy5021 154 KKKFNCIVLPINFN 167 (1021)
Q Consensus 154 ~~~l~~~~~~~~~p 167 (1021)
.+.++..++...+|
T Consensus 203 ~~~~~~~~~~~~Ip 216 (254)
T 3kjh_A 203 KKHLPEDKILGIIP 216 (254)
T ss_dssp HHHSCGGGEEEEEE
T ss_pred HHHhcCCccccccc
Confidence 78887444444444
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0017 Score=70.39 Aligned_cols=67 Identities=19% Similarity=0.134 Sum_probs=43.5
Q ss_pred CCeEEEEEecCChhh--hHHHHH------HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 712 ENKHYAHVDCPGHAD--YIKNMI------TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~--~~~~~~------~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
.++.+.|+||||... ....+. ..+..+|.+++|+|+..+ .+..+.+..... .++-..+++||+|...
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA 253 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc
Confidence 567899999999665 322222 345678999999999864 233333333332 4554567889999753
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0026 Score=69.69 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=47.2
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHh------------hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCC
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSL------------RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDR 141 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l------------~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~ 141 (1021)
.+|.+.||||||...........+ ..+|.+++|+|+..+ ..+....+... ...++ =+++||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~-~~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFS-KVADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHT-TTSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHh-hcCCCcEEEEeCCCC
Confidence 468899999999766433332222 137899999999855 22222222211 22443 367899997
Q ss_pred CCCCHHHHHHHHHHHhCCce
Q psy5021 142 IGANYNNCIIDIKKKFNCIV 161 (1021)
Q Consensus 142 ~~~~~~~~~~~i~~~l~~~~ 161 (1021)
.. ... .+.++...++.+.
T Consensus 267 ~~-~~g-~~~~~~~~~~~Pi 284 (320)
T 1zu4_A 267 TS-KGG-IGLAIKELLNIPI 284 (320)
T ss_dssp CS-CTT-HHHHHHHHHCCCE
T ss_pred CC-chh-HHHHHHHHHCcCE
Confidence 43 222 3445555666543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=74.84 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=73.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc--cCCccccc--C--hH-HHhhhCceeeeeeeEEEee--------
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTTITD--W--MQ-QEQERGITITSASVSIFWE-------- 71 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~--~~~~~~~d--~--~~-~e~~rgiTi~~~~~~~~~~-------- 71 (1021)
.-..|+|+|..|+|||||+..|...... ..|.+ ..+..+.. . .. ....+++.+-.....+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 4467999999999999999998743210 11221 11111100 0 00 1123344433221110000
Q ss_pred -cccCceeEEEEcCCCCCCcHHHH-------HHHhh-----ccCeEEEEEeCCCCCchhHHHHHHHHh-hcCCCEEEEEe
Q psy5021 72 -VNKFKYMINIIDTPGHVDFTIEV-------ERSLR-----VLDGAVIIICASSGIQPQTETVWFQSQ-KYKVPKMIFVN 137 (1021)
Q Consensus 72 -~~~~~~~i~liDtPG~~~f~~~~-------~~~l~-----~~D~~ilvvda~~g~~~~t~~~~~~~~-~~~~p~iiviN 137 (1021)
....++.+.||||+|........ .+.++ ..+-++||+|+..|... ....+... ..++ ..+++|
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~i-tgvIlT 446 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVGL-TGITLT 446 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTCC-SEEEEE
T ss_pred HHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcCC-CEEEEE
Confidence 01235678899999975432221 22222 24678999999877321 22222222 2343 357899
Q ss_pred CcCCCCCCHHHHHHHHHHHhCCc
Q psy5021 138 KMDRIGANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 138 K~D~~~~~~~~~~~~i~~~l~~~ 160 (1021)
|+|.. +... .+-.+...++..
T Consensus 447 KLD~t-akgG-~~lsi~~~~~~P 467 (503)
T 2yhs_A 447 KLDGT-AKGG-VIFSVADQFGIP 467 (503)
T ss_dssp CGGGC-SCCT-HHHHHHHHHCCC
T ss_pred cCCCc-cccc-HHHHHHHHHCCC
Confidence 99963 2222 334455555543
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00072 Score=73.61 Aligned_cols=83 Identities=13% Similarity=0.045 Sum_probs=59.2
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh------cCCCEE-EEEeCcCCCCCCHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK------YKVPKM-IFVNKMDRIGANYN 147 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~------~~~p~i-iviNK~D~~~~~~~ 147 (1021)
..|.+.+||||+.... ....++..+|.+|+++.+...........++.+.. .+++++ +++|+.|.......
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~ 230 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIK 230 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHH
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHH
Confidence 3578999999997653 45667788999999999876655555555555443 367755 78999997543345
Q ss_pred HHHHHHHHHhCC
Q psy5021 148 NCIIDIKKKFNC 159 (1021)
Q Consensus 148 ~~~~~i~~~l~~ 159 (1021)
+.++++.+.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (298)
T 2oze_A 231 SNLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 667778777764
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0019 Score=73.28 Aligned_cols=149 Identities=14% Similarity=0.109 Sum_probs=74.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCC---CcccccccCCcc-cccCh-HHHhhhCceeeeeee-----EEEe---ec-
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGS---SHKIGEVHHGTT-ITDWM-QQEQERGITITSASV-----SIFW---EV- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~---~~~~g~~~~~~~-~~d~~-~~e~~rgiTi~~~~~-----~~~~---~~- 72 (1021)
..+.|+++|+.|+||||++..|...... -...-..+.... ..+.. ......|+.+-.... .+.. ..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998743211 111000011000 00000 011123443332210 0000 00
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHH------HhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVER------SLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN 145 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~------~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~ 145 (1021)
...++.+.+|||||.......... .+..+|.+++|+|+..+. ......+.... .++ .-+++||+|... .
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~-~l~i~GVIlTKlD~~~-~ 252 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHH-HTCCCEEEEESGGGCS-S
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHHh-cCCceEEEEeCcCCcc-c
Confidence 124678999999997654322221 223589999999998652 22222222221 344 456899999742 2
Q ss_pred HHHHHHHHHHHhCCc
Q psy5021 146 YNNCIIDIKKKFNCI 160 (1021)
Q Consensus 146 ~~~~~~~i~~~l~~~ 160 (1021)
.. ...++...++.+
T Consensus 253 ~g-~alsi~~~~g~P 266 (425)
T 2ffh_A 253 GG-AALSARHVTGKP 266 (425)
T ss_dssp CH-HHHHHHHHHCCC
T ss_pred HH-HHHHHHHHHCCC
Confidence 22 233455556654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0015 Score=70.95 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=51.2
Q ss_pred HhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEE
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQT--REHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVI 811 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~ 811 (1021)
.+.++|.+++|+|+..+.+... .+.+..+...++| .++|+||+|+.++.+. +...+++.+..+..|+ ++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~~~-~~~~~~~~~~y~~~g~-----~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQ-PIICITKMDLIEDQDT-EDTIQAYAEDYRNIGY-----DVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCE-EEEEEECGGGCCCHHH-HHHHHHHHHHHHHHTC-----CEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECCccCchhhh-HHHHHHHHHHHHhCCC-----eEEE
Confidence 3788999999999997665433 3344444557888 6788999999874321 0112334444444554 5788
Q ss_pred ecccccc
Q psy5021 812 GSALLAL 818 (1021)
Q Consensus 812 iSa~~~~ 818 (1021)
+||.++.
T Consensus 156 ~sa~~~~ 162 (307)
T 1t9h_A 156 TSSKDQD 162 (307)
T ss_dssp CCHHHHT
T ss_pred EecCCCC
Confidence 9998763
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0033 Score=66.87 Aligned_cols=82 Identities=10% Similarity=0.180 Sum_probs=59.6
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCCCCHHHHHHHHH
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNNCIIDIK 154 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~ 154 (1021)
.|.+.+||||+... ..+..++..+|.+|+|+.+.......+...++.+...+.+.+ +++|+.|..... ..++++.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~ 185 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIE--MAKNEIE 185 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTHH--HHHHHHH
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccccc--chHHHHH
Confidence 57899999998765 667788999999999998765444556666666666666554 679999964322 4566777
Q ss_pred HHhCCce
Q psy5021 155 KKFNCIV 161 (1021)
Q Consensus 155 ~~l~~~~ 161 (1021)
+.++...
T Consensus 186 ~~~~~~~ 192 (263)
T 1hyq_A 186 AILEAKV 192 (263)
T ss_dssp HHTTSCE
T ss_pred HHhCCCe
Confidence 7777543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0021 Score=69.60 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=70.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHH----cCCCcccccccCC-cccccChH-HHhhhCceeeeee----eEEEeecccCc
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFY----SGSSHKIGEVHHG-TTITDWMQ-QEQERGITITSAS----VSIFWEVNKFK 76 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~----~~~~~~~g~~~~~-~~~~d~~~-~e~~rgiTi~~~~----~~~~~~~~~~~ 76 (1021)
+-+.|+++|+.|+||||++..|... .|.....-..+.. ....+... .-...|+.+.... ...... .-.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~~~ 182 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LFSE 182 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-HhcC
Confidence 3568999999999999999998632 2311110000110 00000000 0011122221100 000000 0126
Q ss_pred eeEEEEcCCCCCCcHHHHH----HHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHH
Q psy5021 77 YMINIIDTPGHVDFTIEVE----RSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCI 150 (1021)
Q Consensus 77 ~~i~liDtPG~~~f~~~~~----~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~ 150 (1021)
+.+.|+||||......... ..+. ..|.+++|+|++.+.. ....+.+.....++ .-+++||+|... ... .+
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~-~giVltk~D~~~-~~g-~~ 258 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPV-NQYIFTKIDETT-SLG-SV 258 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCC-CEEEEECTTTCS-CCH-HH
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCC-CEEEEeCCCccc-chh-HH
Confidence 7899999999876543322 2222 3578899999986531 12222222222222 345679999753 333 23
Q ss_pred HHHHHHhCC
Q psy5021 151 IDIKKKFNC 159 (1021)
Q Consensus 151 ~~i~~~l~~ 159 (1021)
.++...++.
T Consensus 259 ~~~~~~~~~ 267 (296)
T 2px0_A 259 FNILAESKI 267 (296)
T ss_dssp HHHHHTCSC
T ss_pred HHHHHHHCc
Confidence 334444543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0013 Score=74.62 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=40.7
Q ss_pred CCeEEEEEecCChhh------hHHHHHH--HhhhCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCeEEEEEeeccccc
Q psy5021 712 ENKHYAHVDCPGHAD------YIKNMIT--GAAQMDGAILVCSAVDGPMPQTREHILLAR-QVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~------~~~~~~~--~~~~aD~ailVvDa~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~Dl~~ 781 (1021)
.+..+.++||||... +...+.. ....+|.++||+|+..|.. ..+.+.... ..+ + ..|++||+|...
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~-~-~gVIlTKlD~~a 252 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASP-I-GSVIITKMDGTA 252 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCS-S-EEEEEECGGGCS
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccC-C-cEEEEecccccc
Confidence 367889999999533 3333322 2235799999999987532 222333232 223 3 567889999754
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0043 Score=67.44 Aligned_cols=147 Identities=17% Similarity=0.136 Sum_probs=72.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc--cCCccccc--ChHHH---hhhCceeeeeeeEE-Ee----ec--
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTTITD--WMQQE---QERGITITSASVSI-FW----EV-- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~--~~~~~~~d--~~~~e---~~rgiTi~~~~~~~-~~----~~-- 72 (1021)
+-..|+|+|+.|+|||||+..|...... ..|++ .....+.. ..+.. +.+++.+-...... .+ ..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 3468999999999999999999743211 11111 11111000 00000 12333332111000 00 00
Q ss_pred --ccCceeEEEEcCCCCCCcHHHHH-------HH----h-hccCeEEEEEeCCCCCchhHHHHHHHH-hhcCCCEEEEEe
Q psy5021 73 --NKFKYMINIIDTPGHVDFTIEVE-------RS----L-RVLDGAVIIICASSGIQPQTETVWFQS-QKYKVPKMIFVN 137 (1021)
Q Consensus 73 --~~~~~~i~liDtPG~~~f~~~~~-------~~----l-~~~D~~ilvvda~~g~~~~t~~~~~~~-~~~~~p~iiviN 137 (1021)
...++.+.++||+|......... .+ + ...+.+++++|+..+.. ....++.. ...++ .++++|
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivT 255 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVT 255 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEE
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEE
Confidence 01134577999999754322211 11 1 23677899999987643 22223333 23344 578899
Q ss_pred CcCCCCCCHHHHHHHHHHHhCCc
Q psy5021 138 KMDRIGANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 138 K~D~~~~~~~~~~~~i~~~l~~~ 160 (1021)
|.|.. +... .+-.+...++.+
T Consensus 256 h~d~~-a~gg-~~l~i~~~~~~p 276 (304)
T 1rj9_A 256 KLDGT-AKGG-VLIPIVRTLKVP 276 (304)
T ss_dssp CTTSS-CCCT-THHHHHHHHCCC
T ss_pred CCccc-cccc-HHHHHHHHHCCC
Confidence 99974 3222 233555556544
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0038 Score=67.62 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=73.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHc---CCCcccccccCCcccccC-h-HHHhhhCceeeeeee-----EEEe---ec-
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYS---GSSHKIGEVHHGTTITDW-M-QQEQERGITITSASV-----SIFW---EV- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~---~~~~~~g~~~~~~~~~d~-~-~~e~~rgiTi~~~~~-----~~~~---~~- 72 (1021)
.-+.++++|+.|+||||++..|.... +.-....+.+.......+ . ......|+.+-.... .+.. ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999886432 111110011111100000 0 011123443332100 0000 00
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHh------hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSL------RVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN 145 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l------~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~ 145 (1021)
...++.+.++||||...........+ ..+|.+++|+|+..+ .......+.... .++ .-+++||+|... .
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~ 252 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-S
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-c
Confidence 01368899999998754422222221 247999999998754 222222222221 244 446899999753 3
Q ss_pred HHHHHHHHHHHhCCc
Q psy5021 146 YNNCIIDIKKKFNCI 160 (1021)
Q Consensus 146 ~~~~~~~i~~~l~~~ 160 (1021)
.. ...++...++.+
T Consensus 253 ~g-~~~~~~~~~~~p 266 (295)
T 1ls1_A 253 GG-AALSARHVTGKP 266 (295)
T ss_dssp CH-HHHHHHHHHCCC
T ss_pred HH-HHHHHHHHHCcC
Confidence 33 233444555544
|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00062 Score=73.70 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=53.2
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC----CchhHHH-------------HH--HHHh----hcC-CC
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG----IQPQTET-------------VW--FQSQ----KYK-VP 131 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g----~~~~t~~-------------~~--~~~~----~~~-~p 131 (1021)
.|.+.+||||+.. ...+..++..+|.+|+|+.+... ....... +| +.++ ..+ .+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 5789999999985 56788899999999999988631 1110111 22 3222 224 67
Q ss_pred EEEEEeCcCCCC-CCHHHHHHHHHHH---hCC
Q psy5021 132 KMIFVNKMDRIG-ANYNNCIIDIKKK---FNC 159 (1021)
Q Consensus 132 ~iiviNK~D~~~-~~~~~~~~~i~~~---l~~ 159 (1021)
+.+|+|++|... ....+..+.+++. ++.
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~ 212 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNALAKRVGF 212 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeeecCCCcchhHHHHHHHHHHHHHcCC
Confidence 788999999765 3344455555553 664
|
| >1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.015 Score=51.98 Aligned_cols=62 Identities=29% Similarity=0.264 Sum_probs=46.7
Q ss_pred ceEEEEEEEeeEEecCCEEEeCCCc-eeeEeceEEEeecCCeeccccccCCCEEEE--ecCC-ccccCCeecc
Q psy5021 312 GSLSFIRIYSGFIKVGDLVYNSTKK-VKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK-ESSTGDTLCS 380 (1021)
Q Consensus 312 g~~~~~RV~sG~l~~gd~v~~~~~~-~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-~~~~gdtl~~ 380 (1021)
|.+..|||.+|+|++|+.| +.+ ...+|.+|.. ..+++++|.|||-|++ .|.. ++..||.|..
T Consensus 48 gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~----~~e~v~eA~~GdnVai~Ikg~~~~I~~GdVLyv 113 (116)
T 1xe1_A 48 KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIER----NREKVEFAIAGDRIGISIEGKIGKVKKGDVLEI 113 (116)
T ss_dssp EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEE----TTEEESEEETTCEEEEEEESCCCCCCTTCEEEE
T ss_pred CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEE----CCcCcCCcCCCCEEEEEEECCccccCCCcEEEE
Confidence 7889999999999999999 333 3455666643 3467999999999998 3433 6777777653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0026 Score=69.17 Aligned_cols=151 Identities=17% Similarity=0.115 Sum_probs=72.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHc---CCCcccccccCCc-ccccCh-HHHhhhCceeeeeee-----EEE---ee-
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYS---GSSHKIGEVHHGT-TITDWM-QQEQERGITITSASV-----SIF---WE- 71 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~---~~~~~~g~~~~~~-~~~d~~-~~e~~rgiTi~~~~~-----~~~---~~- 71 (1021)
..-+.|+++|+.|+||||++..|...- +.-......+... ...+.. ..-...|+.+-.... .+. ..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345789999999999999999886432 1110000001000 000000 000122443321100 000 00
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHH-------Hh-----hccCeEEEEEeCCCCCchhHHHHHHHHh-hcCCCEEEEEeC
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVER-------SL-----RVLDGAVIIICASSGIQPQTETVWFQSQ-KYKVPKMIFVNK 138 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~-------~l-----~~~D~~ilvvda~~g~~~~t~~~~~~~~-~~~~p~iiviNK 138 (1021)
....++.+.++||||.......... .+ ...|.+++|+|+..+. ......+... ..++ .-+++||
T Consensus 182 a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~~~~i-~gvVlTk 258 (306)
T 1vma_A 182 ALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAVNV-TGIILTK 258 (306)
T ss_dssp HHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHSCC-CEEEEEC
T ss_pred HHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHhcCCC-CEEEEeC
Confidence 0113577999999997554433322 22 1378899999997431 1111122222 2222 3456899
Q ss_pred cCCCCCCHHHHHHHHHHHhCCce
Q psy5021 139 MDRIGANYNNCIIDIKKKFNCIV 161 (1021)
Q Consensus 139 ~D~~~~~~~~~~~~i~~~l~~~~ 161 (1021)
+|.. +.... +.++...++.+.
T Consensus 259 ~D~~-~~gG~-~l~~~~~~~~Pi 279 (306)
T 1vma_A 259 LDGT-AKGGI-TLAIARELGIPI 279 (306)
T ss_dssp GGGC-SCTTH-HHHHHHHHCCCE
T ss_pred CCCc-cchHH-HHHHHHHHCCCE
Confidence 9974 33333 455666666543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0052 Score=73.62 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=40.4
Q ss_pred CeEEEEEecCChhh------------hHHHHHHH-hhh-CCEEEEEEECCCCCcHH-HHHHHHHHHHcCCCeEEEEEeec
Q psy5021 713 NKHYAHVDCPGHAD------------YIKNMITG-AAQ-MDGAILVCSAVDGPMPQ-TREHILLARQVGVPNIVVFLNKA 777 (1021)
Q Consensus 713 ~~~i~liDtpG~~~------------~~~~~~~~-~~~-aD~ailVvDa~~g~~~q-t~e~l~~~~~~~ip~iIvviNK~ 777 (1021)
...++++|.||... -+..++.. +.. ..+++++++++.....+ ....+..+...|.+ .|+|+||+
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~r-tI~VlTK~ 224 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDR-TIGILTKP 224 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCS-EEEEEECG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCc-eEEEecch
Confidence 35689999997432 23333433 333 46777778876554422 23333333334667 88899999
Q ss_pred cccc
Q psy5021 778 DCVQ 781 (1021)
Q Consensus 778 Dl~~ 781 (1021)
|++.
T Consensus 225 Dlv~ 228 (608)
T 3szr_A 225 DLVD 228 (608)
T ss_dssp GGSS
T ss_pred hhcC
Confidence 9986
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0071 Score=64.47 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=54.5
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhc--CCCEEEEEeCcCCCCCCHHHHHHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY--KVPKMIFVNKMDRIGANYNNCIID 152 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~--~~p~iiviNK~D~~~~~~~~~~~~ 152 (1021)
..|.+.+||||+... ..+..++..+|.+|+|+.+...-......+++.+... +.++.+|+|+.+... ...+..+.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-~~~~~~~~ 219 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-THKTLFEI 219 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-SCCHHHHH
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-hHHHHHHH
Confidence 357899999999764 5677888899999999998765444455666666655 467889999995432 23344444
Q ss_pred HHH
Q psy5021 153 IKK 155 (1021)
Q Consensus 153 i~~ 155 (1021)
+++
T Consensus 220 l~~ 222 (267)
T 3k9g_A 220 LKT 222 (267)
T ss_dssp HTT
T ss_pred Hhc
Confidence 433
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0094 Score=67.88 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=23.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHH
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFY 31 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~ 31 (1021)
.++--|+|+|..++|||||+|+|+..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 46778999999999999999999865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0037 Score=71.62 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=64.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccc-cccCCc------h-hhhhcCceEeeeEEE-------------Ee
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAF-DTIDNA------P-EEKERGITISTSHVE-------------YE 710 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~-~~~d~~------~-~e~~~G~Ti~~~~~~-------------~~ 710 (1021)
...+++|.+++|||||++.|.+..... ++..... .-..+. . ....+++.+-..... ..
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 467899999999999999997643211 1222110 000111 0 111233322111100 01
Q ss_pred eCCeEEEEEecCChhhh----HHH---HHHHhh-----hCCEEEEEEECCCCCcHHHHHHHHH-HHHcCCCeEEEEEeec
Q psy5021 711 SENKHYAHVDCPGHADY----IKN---MITGAA-----QMDGAILVCSAVDGPMPQTREHILL-ARQVGVPNIVVFLNKA 777 (1021)
Q Consensus 711 ~~~~~i~liDtpG~~~~----~~~---~~~~~~-----~aD~ailVvDa~~g~~~qt~e~l~~-~~~~~ip~iIvviNK~ 777 (1021)
..+..+.|+||+|.... +.. +...++ ..+-++||+|++.|.. ....+.. ....++. . +++||+
T Consensus 373 ~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~it-g-vIlTKL 448 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVGLT-G-ITLTKL 448 (503)
T ss_dssp HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTCCS-E-EEEECG
T ss_pred hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcCCC-E-EEEEcC
Confidence 24567889999995322 211 111122 2578899999987521 2222322 2345776 3 467999
Q ss_pred ccc
Q psy5021 778 DCV 780 (1021)
Q Consensus 778 Dl~ 780 (1021)
|-.
T Consensus 449 D~t 451 (503)
T 2yhs_A 449 DGT 451 (503)
T ss_dssp GGC
T ss_pred CCc
Confidence 964
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.026 Score=58.95 Aligned_cols=81 Identities=17% Similarity=0.106 Sum_probs=58.6
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCC---CEEEEEeCcCCCCCCHHHHHHH
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV---PKMIFVNKMDRIGANYNNCIID 152 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~---p~iiviNK~D~~~~~~~~~~~~ 152 (1021)
.|.+.+||||+... .....++..+|.+|+|+.+.......+...++.+...+. ..-+++|+.|...... .++
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~---~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT---SDE 192 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC---HHH
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC---HHH
Confidence 57899999999764 356778999999999998875545556666777766653 3677899999653322 256
Q ss_pred HHHHhCCce
Q psy5021 153 IKKKFNCIV 161 (1021)
Q Consensus 153 i~~~l~~~~ 161 (1021)
+++.++...
T Consensus 193 ~~~~~~~~v 201 (245)
T 3ea0_A 193 IEKVIGRPI 201 (245)
T ss_dssp HHHHHTSCE
T ss_pred HHHHhCCCe
Confidence 677777644
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.003 Score=72.07 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=40.0
Q ss_pred CCeEEEEEecCChhhhHHHHHH------HhhhCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCeEEEEEeeccccc
Q psy5021 712 ENKHYAHVDCPGHADYIKNMIT------GAAQMDGAILVCSAVDGPMPQTREHILLAR-QVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~~~~~~------~~~~aD~ailVvDa~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~Dl~~ 781 (1021)
.+..+.|+||||...+...+.. .+..+|.+++|+|+..+.. ....+.... ..++. -|++||+|...
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~~~l~i~--gvVlnK~D~~~ 254 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFNEALPLT--GVVLTKVDGDA 254 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHHHHSCCC--CEEEECTTSSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHhccCCCe--EEEEecCCCCc
Confidence 4678999999996443222222 2346899999999987632 222222222 23433 35789999753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0038 Score=67.67 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=37.1
Q ss_pred HhhccCeEEEEEeCCCCCchhH--HHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 97 SLRVLDGAVIIICASSGIQPQT--ETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 97 ~l~~~D~~ilvvda~~g~~~~t--~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
.+..+|.+++|+|+.++..... .+.+..+...++|+++|+||+|+...
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 6889999999999997654433 34444556789999999999999643
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0051 Score=66.82 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=52.9
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCC
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRI 142 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~ 142 (1021)
.|.+.+||||+..... ........+|.+|+|+.+...........++.+...+.+++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 5789999999986653 23344578999999999988877888888888888888866 678999964
|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.049 Score=58.64 Aligned_cols=86 Identities=12% Similarity=-0.015 Sum_probs=52.0
Q ss_pred CceeEEEEcCCCCCCcHHH-HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh----cCCCE-EEEEeCcCCCCCCHHH
Q psy5021 75 FKYMINIIDTPGHVDFTIE-VERSLRVLDGAVIIICASSGIQPQTETVWFQSQK----YKVPK-MIFVNKMDRIGANYNN 148 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~-~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~----~~~p~-iiviNK~D~~~~~~~~ 148 (1021)
..|.+.+|||||....... .......+|.+|+++.+...-...+..+++.+.. .+.++ -+++|+.+. ....+
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~--~~~~~ 194 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT--DREDE 194 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC--TTHHH
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc--hhHHH
Confidence 3688999999996432111 1123367999999998764333333333333322 36664 467899873 23456
Q ss_pred HHHHHHHHhCCcee
Q psy5021 149 CIIDIKKKFNCIVL 162 (1021)
Q Consensus 149 ~~~~i~~~l~~~~~ 162 (1021)
..+++.+.++....
T Consensus 195 ~~~~l~~~~g~~~l 208 (289)
T 2afh_E 195 LIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHTSCEE
T ss_pred HHHHHHHHcCcccc
Confidence 67778777876543
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0081 Score=65.91 Aligned_cols=125 Identities=18% Similarity=0.136 Sum_probs=65.3
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccccccccccc-ccCC-chh------hhhcCceEeeeEEEE-------------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFD-TIDN-APE------EKERGITISTSHVEY------------- 709 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~-~~d~-~~~------e~~~G~Ti~~~~~~~------------- 709 (1021)
....+++|.+++||||+++.|.+.....+ +...... -+.+ ... -+..|+.+-......
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~-g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHG-FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC-CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 34668899999999999999986432211 1111000 0001 011 122333221110000
Q ss_pred eeCCeEEEEEecCChhh----hHHHHHH--HhhhCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCeEEEEEeecccc
Q psy5021 710 ESENKHYAHVDCPGHAD----YIKNMIT--GAAQMDGAILVCSAVDGPMPQTREHILLAR-QVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 710 ~~~~~~i~liDtpG~~~----~~~~~~~--~~~~aD~ailVvDa~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~Dl~ 780 (1021)
...+..+.++||+|... +...... .+-.+|-.++++|+..+. +..+.+.... ..++. ++++||+|..
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it--~iilTKlD~~ 281 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKID--GIILTKLDAD 281 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCC--EEEEECGGGC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCC--EEEEeCcCCc
Confidence 01245677899999533 2222211 123579999999988753 3333343333 45665 4577999964
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.034 Score=59.06 Aligned_cols=85 Identities=12% Similarity=-0.063 Sum_probs=52.0
Q ss_pred ceeEEEEcCCCCCCcHHH-HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh----cCCCE-EEEEeCcCCCCCCHHHH
Q psy5021 76 KYMINIIDTPGHVDFTIE-VERSLRVLDGAVIIICASSGIQPQTETVWFQSQK----YKVPK-MIFVNKMDRIGANYNNC 149 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~-~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~----~~~p~-iiviNK~D~~~~~~~~~ 149 (1021)
.|.+.+|||||....... .......+|.+|+|+.+.......+..+++.+.. .++++ -+++|+.+.. . ..+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~-~-~~~~ 192 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA-N-EYEL 192 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS-C-CHHH
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc-h-hHHH
Confidence 588999999996432111 1122357999999998764333333334444432 35665 4679998742 2 2566
Q ss_pred HHHHHHHhCCcee
Q psy5021 150 IIDIKKKFNCIVL 162 (1021)
Q Consensus 150 ~~~i~~~l~~~~~ 162 (1021)
.+++.+.++....
T Consensus 193 ~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 193 LDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCccc
Confidence 7778777876543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=95.61 E-value=0.037 Score=61.13 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=46.6
Q ss_pred hhhCCEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEe
Q psy5021 735 AAQMDGAILVCSAVDGPM--PQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIG 812 (1021)
Q Consensus 735 ~~~aD~ailVvDa~~g~~--~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~i 812 (1021)
+.++|.+++|. |..+.+ ......+..+...++| .++|+||+|+.+++. .+.+ +++...++..|+ +++++
T Consensus 128 ~anvD~v~iv~-a~~P~~~~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~~~-~~~~-~~~~~~y~~~G~-----~v~~~ 198 (358)
T 2rcn_A 128 AANIDQIVIVS-AILPELSLNIIDRYLVGCETLQVE-PLIVLNKIDLLDDEG-MDFV-NEQMDIYRNIGY-----RVLMV 198 (358)
T ss_dssp EECCCEEEEEE-ESTTTCCHHHHHHHHHHHHHHTCE-EEEEEECGGGCCHHH-HHHH-HHHHHHHHTTTC-----CEEEC
T ss_pred HhcCCEEEEEE-eCCCCCCHHHHHHHHHHHHhcCCC-EEEEEECccCCCchh-HHHH-HHHHHHHHhCCC-----cEEEE
Confidence 47899999765 444433 2223445556677998 678899999987432 1112 223334455565 57889
Q ss_pred cccccc
Q psy5021 813 SALLAL 818 (1021)
Q Consensus 813 Sa~~~~ 818 (1021)
||.++.
T Consensus 199 Sa~~~~ 204 (358)
T 2rcn_A 199 SSHTQD 204 (358)
T ss_dssp BTTTTB
T ss_pred ecCCCc
Confidence 998763
|
| >3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.018 Score=65.38 Aligned_cols=91 Identities=15% Similarity=0.050 Sum_probs=55.9
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCc-------hhHHHHHHHHhhcCCC-----EEEEEeCcCCC
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQ-------PQTETVWFQSQKYKVP-----KMIFVNKMDRI 142 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~-------~~t~~~~~~~~~~~~p-----~iiviNK~D~~ 142 (1021)
..|.+.|||||+... ..+..++..+|.+|+|+.+..-.. .....+++.+...+.+ ++.++|+.|..
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~ 323 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGK 323 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---C
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCc
Confidence 357899999999775 567888999999999997643211 1223344445544433 35689999832
Q ss_pred CCCHHHHHHHHHHHhCCceeeeeeec
Q psy5021 143 GANYNNCIIDIKKKFNCIVLPINFNI 168 (1021)
Q Consensus 143 ~~~~~~~~~~i~~~l~~~~~~~~~p~ 168 (1021)
..-....+.+.+.+|...+...+|.
T Consensus 324 -~~~~~~~~~~~~~~g~~vl~~~IP~ 348 (403)
T 3ez9_A 324 -RDHETSHSLAREVYASNILDSSLPR 348 (403)
T ss_dssp -HHHHHHHHHHHHHHTTSEECCC---
T ss_pred -hhHHHHHHHHHHHhhHhhhceeCCc
Confidence 2234566778888887665445553
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.047 Score=59.14 Aligned_cols=147 Identities=12% Similarity=0.130 Sum_probs=73.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc-CCcccccChHHH------hhhCceeeeeeeE-EEe-----ec-
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQE------QERGITITSASVS-IFW-----EV- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~-~~~~~~d~~~~e------~~rgiTi~~~~~~-~~~-----~~- 72 (1021)
.-..++++|+.|+|||||+..|...... ..|++. .+.........| ..+++.+-..... +.. +.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 3467999999999999999998743211 112221 010000000001 1234544332211 100 00
Q ss_pred ---ccCceeEEEEcCCCCCCcHHHHH-------HHh-----hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEe
Q psy5021 73 ---NKFKYMINIIDTPGHVDFTIEVE-------RSL-----RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVN 137 (1021)
Q Consensus 73 ---~~~~~~i~liDtPG~~~f~~~~~-------~~l-----~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviN 137 (1021)
...++...++||.|...+..... .++ ...+-+++++|++.|...... ..+.....++ .+++++
T Consensus 177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~-t~iiiT 254 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TGLILT 254 (302)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CEEEEE
T ss_pred HHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCC-CEEEEe
Confidence 01134467899999865533221 121 235667999998887655433 2222223454 467789
Q ss_pred CcCCCCCCHHHHHHHHHHHhCC
Q psy5021 138 KMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 138 K~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
|+|-. +.....+ ++...++.
T Consensus 255 hlD~~-~~~g~~l-~~~~~~~~ 274 (302)
T 3b9q_A 255 KLDGS-ARGGCVV-SVVEELGI 274 (302)
T ss_dssp CCSSC-SCTHHHH-HHHHHHCC
T ss_pred CCCCC-CccChhe-ehHHHHCC
Confidence 99864 3333333 34444444
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.037 Score=58.47 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=58.2
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh------cCCCEE-EEEeCcCCCCCCHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK------YKVPKM-IFVNKMDRIGANYN 147 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~------~~~p~i-iviNK~D~~~~~~~ 147 (1021)
..|.+.+||||+... .....++..+|.+|+++.+.......+...++.+.. .+++++ +++|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS--PLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCC--HHHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCC--HHHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 468899999999765 345677889999999999875433333334333321 356765 78999987544345
Q ss_pred HHHHHHHHHhCCce
Q psy5021 148 NCIIDIKKKFNCIV 161 (1021)
Q Consensus 148 ~~~~~i~~~l~~~~ 161 (1021)
+..+.+++.++...
T Consensus 188 ~~~~~l~~~~~~~~ 201 (257)
T 1wcv_1 188 QVEAQLRAHFGEKV 201 (257)
T ss_dssp HHHHHHHHHHGGGB
T ss_pred HHHHHHHHHccccc
Confidence 66777887776543
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.027 Score=61.11 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=63.5
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccccccccccc-ccCCch-hh------hhcCceEeeeEEE----------E---
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFD-TIDNAP-EE------KERGITISTSHVE----------Y--- 709 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~-~~d~~~-~e------~~~G~Ti~~~~~~----------~--- 709 (1021)
.-..+++|.+++|||||++.|.+..... ++...... -+.+.. .+ ...++.+-..... +
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3577899999999999999997543211 11111000 000100 00 1122222111000 0
Q ss_pred eeCCeEEEEEecCChhhhHHHHHH-------Hh-----hhCCEEEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEEEee
Q psy5021 710 ESENKHYAHVDCPGHADYIKNMIT-------GA-----AQMDGAILVCSAVDGPMPQTREHIL-LARQVGVPNIVVFLNK 776 (1021)
Q Consensus 710 ~~~~~~i~liDtpG~~~~~~~~~~-------~~-----~~aD~ailVvDa~~g~~~qt~e~l~-~~~~~~ip~iIvviNK 776 (1021)
...+..+.++||+|.......... .+ ..++.+++++|+..+.. ..+.+. +....++. ++++||
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~t--~iivTh 256 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGLT--GVIVTK 256 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCCS--EEEEEC
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCCc--EEEEEC
Confidence 012345679999995332111111 11 24788999999987643 233333 23345776 456799
Q ss_pred ccccc
Q psy5021 777 ADCVQ 781 (1021)
Q Consensus 777 ~Dl~~ 781 (1021)
.|...
T Consensus 257 ~d~~a 261 (304)
T 1rj9_A 257 LDGTA 261 (304)
T ss_dssp TTSSC
T ss_pred Ccccc
Confidence 99653
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.02 Score=62.52 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=38.3
Q ss_pred CCeEEEEEecCChhhhHHHHHHHh------------hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccc
Q psy5021 712 ENKHYAHVDCPGHADYIKNMITGA------------AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADC 779 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~~~~~~~~------------~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl 779 (1021)
.++.+.|+||||........+..+ ..+|.+++|+|+..+ ..+.+.+.... ...+-.=+++||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~-~~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFS-KVADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHT-TTSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHh-hcCCCcEEEEeCCCC
Confidence 467899999999654322222111 237999999999854 22222222111 123322357899996
Q ss_pred cc
Q psy5021 780 VQ 781 (1021)
Q Consensus 780 ~~ 781 (1021)
..
T Consensus 267 ~~ 268 (320)
T 1zu4_A 267 TS 268 (320)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.065 Score=59.31 Aligned_cols=148 Identities=12% Similarity=0.124 Sum_probs=73.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc-CCcccccChHHH------hhhCceeeeeeeE-EEe-----ec-
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQE------QERGITITSASVS-IFW-----EV- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~-~~~~~~d~~~~e------~~rgiTi~~~~~~-~~~-----~~- 72 (1021)
.-..++++|+.|+|||||+..|...... ..|++. .+.........| ..+++.+-..... +.. ..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 3467999999999999999998753211 112221 010000000001 1234444322111 000 00
Q ss_pred ---ccCceeEEEEcCCCCCCcHHHHH-------HHh-----hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEe
Q psy5021 73 ---NKFKYMINIIDTPGHVDFTIEVE-------RSL-----RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVN 137 (1021)
Q Consensus 73 ---~~~~~~i~liDtPG~~~f~~~~~-------~~l-----~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviN 137 (1021)
...++...++||.|...+..... .++ ...+-+++|+|++.|...... ........++ .+++++
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g~-t~iiiT 311 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TGLILT 311 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CEEEEE
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcCC-eEEEEe
Confidence 01134467999999865532211 111 235677999998877655433 2122223454 467799
Q ss_pred CcCCCCCCHHHHHHHHHHHhCCc
Q psy5021 138 KMDRIGANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 138 K~D~~~~~~~~~~~~i~~~l~~~ 160 (1021)
|+|-. +..-.. -++...++.+
T Consensus 312 hlD~~-~~gG~~-lsi~~~~~~p 332 (359)
T 2og2_A 312 KLDGS-ARGGCV-VSVVEELGIP 332 (359)
T ss_dssp SCTTC-SCTHHH-HHHHHHHCCC
T ss_pred cCccc-ccccHH-HHHHHHhCCC
Confidence 99864 333333 3344445543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=94.36 E-value=0.077 Score=58.55 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=30.5
Q ss_pred HhhccCeEEEEEeCCCCCchhH---HHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 97 SLRVLDGAVIIICASSGIQPQT---ETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 97 ~l~~~D~~ilvvda~~g~~~~t---~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
.+..+|.+++| ||..+ .... .+.+..+...++|+++|+||+|+..
T Consensus 127 i~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EEECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCC
T ss_pred HHhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 35788999876 55543 2222 2334445567999999999999863
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.032 Score=60.45 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=37.5
Q ss_pred CCeEEEEEecCChhhhHHHH-------HHHh-----hhCCEEEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEEEeecc
Q psy5021 712 ENKHYAHVDCPGHADYIKNM-------ITGA-----AQMDGAILVCSAVDGPMPQTREHIL-LARQVGVPNIVVFLNKAD 778 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~~~~-------~~~~-----~~aD~ailVvDa~~g~~~qt~e~l~-~~~~~~ip~iIvviNK~D 778 (1021)
.+..+.++||||........ ...+ ..+|.+++|+|+..+ ....+.+. .....++. -+++||+|
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~--gvVlTk~D 260 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVT--GIILTKLD 260 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCC--EEEEeCCC
Confidence 45679999999953322221 1122 137899999999743 11222222 22234555 34679999
Q ss_pred ccc
Q psy5021 779 CVQ 781 (1021)
Q Consensus 779 l~~ 781 (1021)
...
T Consensus 261 ~~~ 263 (306)
T 1vma_A 261 GTA 263 (306)
T ss_dssp GCS
T ss_pred Ccc
Confidence 654
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.089 Score=54.54 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=58.9
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCCCCCCHHHHHHHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDRIGANYNNCIIDI 153 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i 153 (1021)
..|.+.+||||+... ..+..++..+|.+|+|+++.......+...++.+...+.+. -+++||.|..... ..++++
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 185 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAA 185 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHH
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHH
Confidence 357899999999765 66778899999999999887554455666677776667655 4679999965432 234556
Q ss_pred HHHhCCc
Q psy5021 154 KKKFNCI 160 (1021)
Q Consensus 154 ~~~l~~~ 160 (1021)
.+.++..
T Consensus 186 ~~~~~~~ 192 (237)
T 1g3q_A 186 EDVMEVP 192 (237)
T ss_dssp HHHHCSC
T ss_pred HHHhCcc
Confidence 6666654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.038 Score=62.60 Aligned_cols=65 Identities=23% Similarity=0.283 Sum_probs=38.6
Q ss_pred CCeEEEEEecCChhhh----HHHH--HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCeEEEEEeecccc
Q psy5021 712 ENKHYAHVDCPGHADY----IKNM--ITGAAQMDGAILVCSAVDGPMPQTREHILLAR-QVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~----~~~~--~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~Dl~ 780 (1021)
.+..+.|+||||.... ...+ +..+..+|.++||+|+..+. .....+.... ..++ .-|++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~~l~i--~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDEKVGV--TGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHTCC--CEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHHhcCCc--eEEEEeCcCCc
Confidence 5678999999995432 2221 12234689999999998652 2222222222 2343 34578999964
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.062 Score=61.12 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.6
Q ss_pred cccceeeeeeeeeccchhhhhhhccc
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKV 674 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~ 674 (1021)
.+...++++|..++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45677889999999999999999864
|
| >3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.049 Score=61.68 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=57.2
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCc-------hhHHHHHHHHhhcC--CC---EEEEEeCcCCC
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQ-------PQTETVWFQSQKYK--VP---KMIFVNKMDRI 142 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~-------~~t~~~~~~~~~~~--~p---~iiviNK~D~~ 142 (1021)
..|.+.+||||+... ..+..++..+|.+|+|+.+..-.. ......++.+...+ .+ ++.++|+.+..
T Consensus 243 ~~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~ 320 (398)
T 3ez2_A 243 SDYDFILVDSGPHLD--AFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNK 320 (398)
T ss_dssp TTCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSC
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCc
Confidence 368899999999875 457778889999999997743211 11222334444443 33 35578887742
Q ss_pred CCCHHHHHHHHHHHhCCceeeeeeec
Q psy5021 143 GANYNNCIIDIKKKFNCIVLPINFNI 168 (1021)
Q Consensus 143 ~~~~~~~~~~i~~~l~~~~~~~~~p~ 168 (1021)
..-....+.+.+.++...++..+|.
T Consensus 321 -~~~~~~~~~l~~~~g~~vl~~~IP~ 345 (398)
T 3ez2_A 321 -ADHKYCHSLAKEVFGGDMLDVFLPR 345 (398)
T ss_dssp -HHHHHHHHHHHHHHGGGBCSCCEEC
T ss_pred -hhHHHHHHHHHHHhcccccceeccc
Confidence 2234567788888886555444553
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.049 Score=58.82 Aligned_cols=67 Identities=16% Similarity=0.048 Sum_probs=37.6
Q ss_pred CCeEEEEEecCChhhhH----HHHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 712 ENKHYAHVDCPGHADYI----KNMITGAA--QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~----~~~~~~~~--~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
.+..+.|+||||..... ..+...+. ..|.+++|+|++.+.. ...+........++. -+++||+|...
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~--giVltk~D~~~ 253 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVN--QYIFTKIDETT 253 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCC--EEEEECTTTCS
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCC--EEEEeCCCccc
Confidence 45689999999954432 22222222 3678899999986421 112222222223343 34669999754
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.2 Score=51.66 Aligned_cols=87 Identities=13% Similarity=0.034 Sum_probs=59.7
Q ss_pred CceeEEEEcCCCCC-----CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCCCCHHH
Q psy5021 75 FKYMINIIDTPGHV-----DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNN 148 (1021)
Q Consensus 75 ~~~~i~liDtPG~~-----~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~ 148 (1021)
..+.+.+||+||.. +......-+-....-+|+|+++..+-..++...++.+...++++. +++|+++......+.
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~ 188 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDE 188 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHH
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHH
Confidence 46789999999742 111112222223356899999988776777777777788899976 468999865445677
Q ss_pred HHHHHHHHhCCce
Q psy5021 149 CIIDIKKKFNCIV 161 (1021)
Q Consensus 149 ~~~~i~~~l~~~~ 161 (1021)
..+.+++.++.++
T Consensus 189 ~~~~l~~~~g~pv 201 (228)
T 3of5_A 189 QINTIEELSGYKC 201 (228)
T ss_dssp HHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCE
Confidence 7888888887643
|
| >1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1 | Back alignment and structure |
|---|
Probab=93.31 E-value=0.11 Score=45.17 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=60.0
Q ss_pred EEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceee---EeceEEEeecCCeeccccccCCCEEEEe--cCCcccc
Q psy5021 300 SLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKE---KIFRILRMFANSKKDINDAHFGDIVVIV--GLKESST 374 (1021)
Q Consensus 300 ~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~---~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl~~~~~ 374 (1021)
|-|-++|..+..|.+|-++|.+|.++++..+...+.+.-. ++..|.+ ....++++.+|.=|+|. +..+++.
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr----~KddV~EV~~G~ECGi~l~~~~dik~ 84 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKR----YKDDVREVAQGYECGLTIKNFNDIKE 84 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEEC----SSSCCSCCBTTCEEEEECTTCSSCSS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcc----cccccceECCCcEEEEEEcCcCCCCC
Confidence 4455666677889999999999999999999988877432 5555543 35679999999999994 5567899
Q ss_pred CCeec
Q psy5021 375 GDTLC 379 (1021)
Q Consensus 375 gdtl~ 379 (1021)
||.|-
T Consensus 85 GD~Ie 89 (99)
T 1d1n_A 85 GDVIE 89 (99)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 99873
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.14 Score=55.42 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=64.2
Q ss_pred ceeeeeeeeeccchhhhhhhcccccccccccccccc-ccCCch------h-hhhcCceEeeeEEE-E-------------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFD-TIDNAP------E-EKERGITISTSHVE-Y------------- 709 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~-~~d~~~------~-e~~~G~Ti~~~~~~-~------------- 709 (1021)
-..+++|..++|||||++.|.+..... ++...... -+.+.. . ....++.+-..... .
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 179 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH
Confidence 467899999999999999998643211 12211100 011110 0 01123333221111 0
Q ss_pred eeCCeEEEEEecCChhhhHHHH-------HHHh-----hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeec
Q psy5021 710 ESENKHYAHVDCPGHADYIKNM-------ITGA-----AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKA 777 (1021)
Q Consensus 710 ~~~~~~i~liDtpG~~~~~~~~-------~~~~-----~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~ 777 (1021)
...+....++|++|...+.... ...+ ..++-+++|+|++.|...... ...+....++. ++++||+
T Consensus 180 ~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~t--~iiiThl 256 (302)
T 3b9q_A 180 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGIT--GLILTKL 256 (302)
T ss_dssp HHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCC--EEEEECC
T ss_pred HHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCCC--EEEEeCC
Confidence 0123446789999954332211 1111 246777999998776543322 12223345776 4567999
Q ss_pred cccc
Q psy5021 778 DCVQ 781 (1021)
Q Consensus 778 Dl~~ 781 (1021)
|-..
T Consensus 257 D~~~ 260 (302)
T 3b9q_A 257 DGSA 260 (302)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 9653
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.03 Score=64.91 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=56.9
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHH-HhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQ-EQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~-e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
-.+|.++|.+|+||||+..+|....+.... + +...+.... +...|. .....++|+.|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~----~--t~~~~~d~~r~~~~g~----------------~~~~~ifd~~g 96 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV----P--TREFNVGQYRRDMVKT----------------YKSFEFFLPDN 96 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC----C--EEEEEHHHHHHHHHCS----------------CCCGGGGCTTC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC----C--ceEEecchhhhhhccC----------------CCcccccCCCC
Confidence 458999999999999999999643221000 0 000000000 000010 11224678888
Q ss_pred CCCc--HHHH--------HHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhhcCCCEEEE
Q psy5021 87 HVDF--TIEV--------ERSLRVLDGAVIIICASSGIQPQTETVW-FQSQKYKVPKMIF 135 (1021)
Q Consensus 87 ~~~f--~~~~--------~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~~~~p~iiv 135 (1021)
...| ...+ ..++..+++.++|+|++..- ...+..| ..+++.+.+++++
T Consensus 97 ~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~-~~~R~~~~~~~~~~~~~vv~l 155 (469)
T 1bif_A 97 EEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTT-RERRAMIFNFGEQNGYKTFFV 155 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCS-HHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHHHHHHHHhcCCcEEEE
Confidence 6322 2222 44455578889999999864 4344444 5556666665544
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
Probab=92.75 E-value=0.52 Score=48.11 Aligned_cols=94 Identities=6% Similarity=-0.051 Sum_probs=60.9
Q ss_pred CceeEEEEcCCCCCCc--HH--HHHHHhhc-cCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCCCCHHH
Q psy5021 75 FKYMINIIDTPGHVDF--TI--EVERSLRV-LDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNN 148 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f--~~--~~~~~l~~-~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~ 148 (1021)
..|.+.+|||||...- .. .....+.. .+.+|+|+++..+-..++...++.++..+++++ +++|+.|.......+
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 3688999999986531 00 11111122 235888888865545556666677777788866 678999975555677
Q ss_pred HHHHHHHHhCCceeeeeeecc
Q psy5021 149 CIIDIKKKFNCIVLPINFNIG 169 (1021)
Q Consensus 149 ~~~~i~~~l~~~~~~~~~p~~ 169 (1021)
..+.+.+.++...+ -.+|..
T Consensus 187 ~~~~l~~~~~~~vl-~~Ip~~ 206 (224)
T 1byi_A 187 YMTTLTRMIPAPLL-GEIPWL 206 (224)
T ss_dssp HHHHHHHHSSSCEE-EEECCC
T ss_pred HHHHHHHHcCCCEE-EECCCC
Confidence 78888888876554 245543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1021 | ||||
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 6e-82 | |
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 1e-35 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 1e-70 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 1e-42 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 2e-66 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 3e-34 | |
| d2dy1a2 | 267 | c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t | 6e-59 | |
| d2dy1a2 | 267 | c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t | 7e-16 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 2e-57 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 5e-39 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 2e-44 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 4e-28 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 5e-43 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 3e-31 | |
| d2bv3a3 | 121 | d.14.1.1 (A:479-599) Elongation factor G (EF-G), d | 4e-39 | |
| d1efca1 | 92 | b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), | 4e-37 | |
| d1d2ea1 | 98 | b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), | 3e-36 | |
| d2c78a1 | 100 | b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), | 1e-34 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 2e-31 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 5e-18 | |
| d2dy1a3 | 115 | d.14.1.1 (A:455-569) Elongation factor G (EF-G), d | 3e-31 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 4e-31 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 4e-25 | |
| d1f60a1 | 94 | b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, | 4e-28 | |
| d1wb1a1 | 92 | b.43.3.1 (A:180-271) Elongation factor SelB, domai | 5e-28 | |
| d1jnya1 | 95 | b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, | 2e-27 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 1e-24 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 5e-20 | |
| d1d2ea2 | 103 | b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) | 4e-24 | |
| d1kk1a1 | 121 | b.43.3.1 (A:201-321) Initiation factor eIF2 gamma | 7e-24 | |
| d1r5ba1 | 95 | b.43.3.1 (A:460-554) Eukaryotic peptide chain rele | 1e-23 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 2e-23 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 1e-15 | |
| d1s0ua1 | 118 | b.43.3.1 (A:230-347) Initiation factor eIF2 gamma | 3e-23 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 3e-22 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 3e-16 | |
| d2bv3a4 | 75 | d.58.11.1 (A:404-478) Elongation factor G (EF-G) { | 5e-22 | |
| d2c78a2 | 93 | b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) | 3e-21 | |
| d2bv3a5 | 89 | d.58.11.1 (A:600-688) Elongation factor G (EF-G) { | 4e-21 | |
| d2bv3a1 | 121 | b.43.3.1 (A:283-403) Elongation factor G (EF-G), d | 2e-20 | |
| d2qn6a1 | 114 | b.43.3.1 (A:207-320) Initiation factor eIF2 gamma | 2e-19 | |
| d1xe1a_ | 91 | b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococ | 3e-19 | |
| d2dy1a4 | 77 | d.58.11.1 (A:378-454) Elongation factor G (EF-G) { | 2e-18 | |
| d1n0ua4 | 79 | d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) | 4e-18 | |
| d2dy1a1 | 103 | b.43.3.1 (A:275-377) Elongation factor G (EF-G), d | 5e-18 | |
| d2dy1a5 | 96 | d.58.11.1 (A:570-665) Elongation factor G (EF-G) { | 5e-17 | |
| d1zunb1 | 92 | b.43.3.1 (B:238-329) Sulfate adenylate transferase | 3e-16 | |
| d1n0ua3 | 165 | d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), | 2e-14 | |
| d1n0ua1 | 138 | b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), | 4e-14 | |
| d1n0ua5 | 117 | d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) | 8e-14 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 1e-12 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 7e-12 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 2e-12 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 1e-09 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 3e-06 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 3e-04 | |
| d1g7sa2 | 128 | b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, | 6e-06 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 4e-05 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.001 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 0.001 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 0.002 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 0.003 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 0.004 |
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 265 bits (677), Expect = 6e-82
Identities = 125/274 (45%), Positives = 186/274 (67%), Gaps = 8/274 (2%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGI AH+DAGKTTTTERIL+Y+G HKIGEVH G D+M+QE+ERGITIT+A +
Sbjct: 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 66
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
FW+ + INIID PGHVDFTIEVERS+RVLDGA+++ +S G++PQ+ETVW Q++KY
Sbjct: 67 FWK----DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 122
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
KVP++ F NKMD+ GA+ I ++++ + + IG E+ + GI+D++ K++ +
Sbjct: 123 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 182
Query: 189 KEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNY-SINDIKNSIRK 244
+ I I ++ L Y+E ++E ++ DE + KY+ + ++ +IRK
Sbjct: 183 GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRK 242
Query: 245 LVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPS 278
+ KI P+ GS+LKNKG++ LL+++ +YLPS
Sbjct: 243 GTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS 276
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 134 bits (338), Expect = 1e-35
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYG-GEVRAFD-TIDNAPEEKERGITISTSHVEYESE 712
G H+D GKTT T + + I+ GEV T+D +E+ERGITI+ + +
Sbjct: 10 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 69
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+ +D PGH D+ + +DGAI+V + G PQ+ A + VP +
Sbjct: 70 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIA 128
Query: 773 FLNKADCVQDKELLDLVEMEIR 794
F NK D L + M+ R
Sbjct: 129 FANKMDKTGADLWLVIRTMQER 150
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 231 bits (590), Expect = 1e-70
Identities = 130/198 (65%), Positives = 150/198 (75%), Gaps = 8/198 (4%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYG-GEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V++ EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 7 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 66
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 67 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 126
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-------QL 826
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE N
Sbjct: 127 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 186
Query: 827 GTTSIKKLLDVLDSSIPT 844
I +LLD +D IPT
Sbjct: 187 WVDKIWELLDAIDEYIPT 204
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 152 bits (384), Expect = 1e-42
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 15/205 (7%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + + EV I D +E+ RGITI +A
Sbjct: 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI-DKAPEERARGITINTA----H 59
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
E K + +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 60 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 119
Query: 130 VPKMI-FVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
VP ++ F+NK+D +D + + + + + + E V +I +
Sbjct: 120 VPYIVVFMNKVDM---------VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA 170
Query: 189 KENSIIIKNIDKDQLSAFDYYNELM 213
E + + D EL+
Sbjct: 171 LEQMHRNPKTRRGENEWVDKIWELL 195
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 219 bits (558), Expect = 2e-66
Identities = 122/191 (63%), Positives = 156/191 (81%), Gaps = 1/191 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+TK+ +E G + + ++ IDNAPEE+ RGITI+ +HVEY + +
Sbjct: 7 GTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAH DCPGHADY+KNMITG A +DG ILV +A DGPMPQTREH+LLARQ+GV ++VV++
Sbjct: 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYV 126
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NKAD VQD E+++LVE+EIRELLTE+ + GE T I++GSAL ALE +D LG S++KL
Sbjct: 127 NKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPE-LGLKSVQKL 185
Query: 835 LDVLDSSIPTP 845
LD +D+ IP P
Sbjct: 186 LDAVDTYIPVP 196
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 128 bits (322), Expect = 3e-34
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T I G D +E+ RGITI +A
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGG--GAKFKKYEEIDNAPEERARGITINAA----H 58
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
E + D PGH D+ + LDG ++++ A+ G PQT +++
Sbjct: 59 VEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG 118
Query: 130 VPKMI-FVNKMD 140
V ++ +VNK D
Sbjct: 119 VEHVVVYVNKAD 130
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 201 bits (511), Expect = 6e-59
Identities = 64/271 (23%), Positives = 129/271 (47%), Gaps = 7/271 (2%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
R + ++ H +GKTT TE +L+ +G+ + G V GTT TD+ + + T+ +
Sbjct: 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTV----RTG 58
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
+ + + ++D PG+ DF E+ +L D A++ + A +G+Q TE W +++
Sbjct: 59 VAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL 118
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
+P+M+ V K+D+ G Y + PI+ + + G++D+ + K++ +
Sbjct: 119 GLPRMVVVTKLDKGGDYYALLEDLRSTLGPIL--PIDLPLYEGGKWVGLIDVFHGKAYRY 176
Query: 189 KENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNY-SINDIKNSIRKLVL 247
+ + ++ + + +LE + DE LEKY+ + ++ + + V
Sbjct: 177 ENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVR 236
Query: 248 KNKIIPIMCGSSLKNKGIEFLLNSICEYLPS 278
+ + P+ S + G+ LL I E LPS
Sbjct: 237 RGLLYPVALASGEREIGVLPLLELILEALPS 267
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 76.9 bits (188), Expect = 7e-16
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 3/129 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIY--GGEVRAFDTIDNAPEEKERGITISTSHVEYESE 712
+GH GKTTLT AL + G T D PE K T+ T
Sbjct: 6 ALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR 65
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+D PG+ D++ + D A++ SA G T +A ++G+P +VV
Sbjct: 66 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVV 125
Query: 773 FLNKADCVQ 781
K D
Sbjct: 126 V-TKLDKGG 133
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 195 bits (497), Expect = 2e-57
Identities = 68/231 (29%), Positives = 103/231 (44%), Gaps = 37/231 (16%)
Query: 655 GTIGHVDHGKTTLTAALT---------------KVSSEIYGGEVRAFDTIDNAPEEKERG 699
IGHVD GK+T T L K ++E+ G + +D E+ERG
Sbjct: 10 VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERG 69
Query: 700 ITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM------- 752
ITI + ++E+ +D PGH D+IKNMITG +Q D AIL+ + G
Sbjct: 70 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKD 129
Query: 753 PQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVI 811
QTREH LLA +GV ++V +NK D V+ D+ + E + + ++ + V
Sbjct: 130 GQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVP 189
Query: 812 GSALLALE-------------GKDDNQLGTTSIKKLLDVLDSSIPTPNRIT 849
S + + + G K LL+ +D +I P+R T
Sbjct: 190 ISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID-AIEQPSRPT 239
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 143 bits (361), Expect = 5e-39
Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 33/227 (14%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG-------------SSHKIGEVHHGTTITDWMQQEQE 56
N+ +I HVD+GK+TTT +++ G ++ + D ++ E+E
Sbjct: 8 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 67
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-- 114
RGITI A KY + +ID PGH DF + D A++II G
Sbjct: 68 RGITIDIALWKFETP----KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFE 123
Query: 115 -----QPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYN------NCIIDIKKKFNCIVL 162
QT + V ++I VNKMD + + + + KK
Sbjct: 124 AGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPK 183
Query: 163 PINFNIGIEENYEGIVDIINKKSFF--WKENSIIIKNIDKDQLSAFD 207
+ F N + +++ ++ W++ + K L A D
Sbjct: 184 TVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID 230
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 162 bits (410), Expect = 2e-44
Identities = 68/296 (22%), Positives = 124/296 (41%), Gaps = 28/296 (9%)
Query: 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGIT 60
+ +KV RN+ +IAHVD GK+T T+ ++ +G T D + EQERGIT
Sbjct: 10 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFT--DTRKDEQERGIT 67
Query: 61 ITSASVSIFWEVNKF------------KYMINIIDTPGHVDFTIEVERSLRVLDGAVIII 108
I S ++S++ E++ ++IN+ID+PGHVDF+ EV +LRV DGA++++
Sbjct: 68 IKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVV 127
Query: 109 CASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNI 168
G+ QTETV Q+ ++ ++ +NK+DR D+ + F V +N +
Sbjct: 128 DTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIV 187
Query: 169 GIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLS-AFDYYNELMLETLSNNDEFFLEK 227
D + + + + + + + +++
Sbjct: 188 ------STYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDR 241
Query: 228 YINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD 283
+++ K K G L+ F+L+ I + +
Sbjct: 242 LWGDSFFNPKTKKWTNKDTDAE-------GKPLERAFNMFILDPIFRLFTAIMNFK 290
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 114 bits (286), Expect = 4e-28
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 21/175 (12%)
Query: 639 LRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKER 698
+R L T++R I HVDHGK+TLT +L + + I + D +E+ER
Sbjct: 7 MRSLMDKVTNVR--NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQER 64
Query: 699 GITISTSHVEYESENKH----------------YAHVDCPGHADYIKNMITGAAQMDGAI 742
GITI ++ + SE +D PGH D+ + DGA+
Sbjct: 65 GITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGAL 124
Query: 743 LVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797
+V ++G QT + A + + V +NK D + + + ++ +
Sbjct: 125 VVVDTIEGVCVQTETVLRQALGERIKPV-VVINKVDRALLEL--QVSKEDLYQTF 176
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 154 bits (389), Expect = 5e-43
Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 29/220 (13%)
Query: 655 GTIGHVDHGKTTLTAALT---------------KVSSEIYGGEVRAFDTIDNAPEEKERG 699
IGHVDHGK+TL L + + ++ + +D EE+ERG
Sbjct: 7 IVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG 66
Query: 700 ITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-------M 752
+TI+ + + +E++ + +D PGH D++KNMITGA+Q D AILV SA G
Sbjct: 67 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVE 126
Query: 753 PQTREHILLARQVGVPNIVVFLNKADCVQ---DKELLDLVEMEIRELLTEYDFDGENTKI 809
QTREHI+LA+ +G+ ++V +NK D + D++ + ++ + + Y F+ +
Sbjct: 127 GQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRF 186
Query: 810 VIGSALLA--LEGKDDNQLGTTSIKKLLDVLDSSIPTPNR 847
V A + K +N + + L + LD + P +
Sbjct: 187 VPVVAPSGDNITHKSEN-MKWYNGPTLEEYLD-QLELPPK 224
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 120 bits (301), Expect = 3e-31
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 25/167 (14%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG-------------SSHKIGEVHHGTTITDWMQQEQE 56
N+ +I HVD GK+T R+L G + E + D +++E+E
Sbjct: 5 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 64
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-- 114
RG+TI F KY IID PGH DF + D A++++ A G
Sbjct: 65 RGVTINL----TFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 120
Query: 115 -----QPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYNNCIIDIKK 155
+ QT ++ + ++I VNKMD Y+
Sbjct: 121 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIV 167
|
| >d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV {Thermus thermophilus [TaxId: 274]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus [TaxId: 274]
Score = 138 bits (350), Expect = 4e-39
Identities = 64/122 (52%), Positives = 92/122 (75%), Gaps = 2/122 (1%)
Query: 467 PQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPK 526
PQV+Y+E+I K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG IPK
Sbjct: 1 PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVIPK 58
Query: 527 EFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKK 586
E+IPA++KGI + G ++G+PV+ IKV L +GS+H VDSSE AFK A ++A+K+A++K
Sbjct: 59 EYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQK 118
Query: 587 AN 588
+
Sbjct: 119 GD 120
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Score = 132 bits (333), Expect = 4e-37
Identities = 70/90 (77%), Positives = 82/90 (91%)
Query: 850 DKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLD 909
DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T K+T TG+EMF+K LD
Sbjct: 3 DKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLD 62
Query: 910 EGLAGENVGILLRSVKREEVERGQVLAKIG 939
EG AGENVG+LLR +KREE+ERGQVLAK G
Sbjct: 63 EGRAGENVGVLLRGIKREEIERGQVLAKPG 92
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 129 bits (327), Expect = 3e-36
Identities = 55/96 (57%), Positives = 76/96 (79%)
Query: 847 RITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKK 906
R +KPFL+P+E V+SI GRGTVVTG +ERGI+K G+E E +G+ + I+T +TGIEMF K
Sbjct: 2 RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHK 61
Query: 907 TLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIK 942
+LD AG+N+G L+R +KRE++ RG V+AK GSI+
Sbjct: 62 SLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQ 97
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Score = 125 bits (315), Expect = 1e-34
Identities = 69/99 (69%), Positives = 82/99 (82%), Gaps = 1/99 (1%)
Query: 845 PNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYK-QTIKTTITGIEM 903
P R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+EIVG +T KT +TG+EM
Sbjct: 1 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 60
Query: 904 FKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIK 942
+KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI
Sbjct: 61 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSIT 99
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 120 bits (301), Expect = 2e-31
Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 30/207 (14%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSH-------- 706
G +GHVDHGKTTL A+T + + + E++ TI E G+ S
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEP 71
Query: 707 -------VEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCS-AVDGPMPQTREH 758
+ + + +D PGH + M++GAA MDGAILV + P PQTREH
Sbjct: 72 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 131
Query: 759 ILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818
+ +GV N+++ NK D V KE +I++ EN I+ SAL +
Sbjct: 132 FVALGIIGVKNLIIVQNKVDVV-SKEEALSQYRQIKQFTKGT--WAENVPIIPVSALHKI 188
Query: 819 EGKDDNQLGTTSIKKLLDVLDSSIPTP 845
I L++ ++ I TP
Sbjct: 189 N-----------IDSLIEGIEEYIKTP 204
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 81.5 bits (200), Expect = 5e-18
Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 24/194 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
NIG++ HVD GKTT + I S K E E G+ + +
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTS--KHSEELKRGMTIKLGYAETNIGVCESCKKPEAY 67
Query: 70 W-----------EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
+ KF I+ ID PGH + ++DGA++++ A+
Sbjct: 68 VTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQ 127
Query: 119 ETVWFQ--SQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKF-------NCIVLPIN--FN 167
F +I NK+D + K+F N ++P++
Sbjct: 128 TREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHK 187
Query: 168 IGIEENYEGIVDII 181
I I+ EGI + I
Sbjct: 188 INIDSLIEGIEEYI 201
|
| >d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 116 bits (291), Expect = 3e-31
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 5/118 (4%)
Query: 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIP 530
Y+E+IKK+ +GKY KQ+GG GQYG V +R+E + F+ I GG IP ++
Sbjct: 2 YRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLE-----PASEYGFEWRITGGVIPSKYQE 56
Query: 531 AIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588
AIE+GI GV+ G+PV+ K + NGS+H VDSS+ AF+ AA++A K + +A+
Sbjct: 57 AIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAH 114
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 119 bits (300), Expect = 4e-31
Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 22/211 (10%)
Query: 656 TIGHVDHGKTTLTAALTKVSSEIY-----------------GGEVRAFDTIDNAPEEKER 698
T G+VD GK+TL L S IY G +V +D E+E+
Sbjct: 14 TCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQ 73
Query: 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
GITI ++ + + + + D PGH Y +NM TGA+ D AI++ A G QTR H
Sbjct: 74 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH 133
Query: 759 ILLARQVGVPNIVVFLNKAD-CVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSAL-- 815
+A +G+ +IVV +NK D D+ + + ++ + + F V SAL
Sbjct: 134 SYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKG 193
Query: 816 LALEGKDDNQLGTTSIKKLLDVLDSSIPTPN 846
+ K + + + L+++L+ ++ +
Sbjct: 194 DNVVNKSER-SPWYAGQSLMEILE-TVEIAS 222
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 102 bits (255), Expect = 4e-25
Identities = 39/176 (22%), Positives = 62/176 (35%), Gaps = 19/176 (10%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGS---------------SHKIGEVHHGTTITDWMQQ 53
+VD GK+T R+L S S G+ + D +Q
Sbjct: 10 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQA 69
Query: 54 EQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG 113
E+E+GITI A + + K I DTPGH +T + D A+I++ A G
Sbjct: 70 EREQGITIDVA----YRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG 125
Query: 114 IQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIG 169
+Q QT + + + ++ + IK + I F
Sbjct: 126 VQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPT 181
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 106 bits (266), Expect = 4e-28
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 850 DKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLD 909
DKP +P++DV+ I G GTV G++E G++K G + T + + +EM + L+
Sbjct: 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTE--VKSVEMHHEQLE 58
Query: 910 EGLAGENVGILLRSVKREEVERGQVLAK 937
+G+ G+NVG +++V +E+ RG V
Sbjct: 59 QGVPGDNVGFNVKNVSVKEIRRGNVCGD 86
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Score = 106 bits (265), Expect = 5e-28
Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 847 RITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKK 906
R T+ F MP++ F I G GTVVTG I +GIVK G+E++++ + T + I+ FK+
Sbjct: 1 RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMS--TKVRSIQYFKE 58
Query: 907 TLDEGLAGENVGILLRSVKREEVERGQVLAKIGS 940
++ E AG+ VG+ ++ V +++ RG +L +
Sbjct: 59 SVMEAKAGDRVGMAIQGVDAKQIYRGCILTSKDT 92
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 104 bits (261), Expect = 2e-27
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 849 TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTL 908
DKP +PI+DV+SISG GTV G++E G++K G++I + IE +
Sbjct: 2 VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVF--MPAGKVGEVRSIETHHTKM 59
Query: 909 DEGLAGENVGILLRSVKREEVERGQVLAKIGS 940
D+ G+N+G +R V++++++RG V+ +
Sbjct: 60 DKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNN 91
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 101 bits (253), Expect = 1e-24
Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 31/190 (16%)
Query: 655 GTIGHVDHGKTTLTAALTKVS--------------SEIYGGEVRAFDTIDNA-PEEKERG 699
IGHVD GK+TL + ++ ++ G E ++ EE+E+G
Sbjct: 28 VFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG 87
Query: 700 ITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP------ 753
T+ +E+E++ ++ +D PGH Y+ NMI GA+Q D +LV SA G
Sbjct: 88 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG 147
Query: 754 -QTREHILLARQVGVPNIVVFLNKADCVQD-------KELLDLVEMEIRELLTEYDFDGE 805
QTREH +LAR G+ ++VV +NK D KE +D + M +R +
Sbjct: 148 GQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY--NSKT 205
Query: 806 NTKIVIGSAL 815
+ K + SA
Sbjct: 206 DVKYMPVSAY 215
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 88.4 bits (218), Expect = 5e-20
Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 35/221 (15%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG-------------SSHKIGEVHHGTTITDWMQQEQE 56
NI I HVDAGK+T ILF +G + E + + D +E+E
Sbjct: 26 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 85
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-- 114
+G T+ +++D PGH + + D V++I A G
Sbjct: 86 KGKTVE----VGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 141
Query: 115 -----QPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYNNCIID-IKKKFNCIVLPINFN 167
QT ++ + ++ +NKMD ++ K + + +
Sbjct: 142 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 201
Query: 168 IGIEE---------NYEGIVDIINKKSFFWKENSIIIKNID 199
+ + + D ++ W + +++ +D
Sbjct: 202 NSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLD 242
|
| >d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Elongation factor/aminomethyltransferase common domain superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain domain: Elongation factor Tu (EF-Tu) species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 95.4 bits (237), Expect = 4e-24
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 944 YNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNV 1003
+ E +VYIL+KEEGGRH PF + + P + T D+ LP E+ +PG+++KL +
Sbjct: 1 HQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTL 60
Query: 1004 TLLSSIAIEIGLRFAIRE 1021
L + +E G RF +R+
Sbjct: 61 ILRQPMILEKGQRFTLRD 78
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 121 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 95.5 bits (237), Expect = 7e-24
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 845 PNRITDKPFLMPIEDVFSISG--------RGTVVTGKIERGIVKNGEEIEIVGYK----- 891
P R +KP M + F ++ G V+ G I +G +K G+EIEI
Sbjct: 1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEH 60
Query: 892 -----QTIKTTITGIEMFKKTLDEGLAGENVGILLR---SVKREEVERGQVLAKIGSIK 942
+ I T I ++ + ++E G VG+ + + + ++ G V+ K G +
Sbjct: 61 GRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLP 119
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 93.7 bits (233), Expect = 1e-23
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 846 NRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK 905
R + PF+MPI + GT++ GKIE G +K + ++ QT++ T +
Sbjct: 3 ERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIY-DEAD 59
Query: 906 KTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS 940
+ + + G+ V + +R +V+ G VL +
Sbjct: 60 EEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN 93
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 97.0 bits (240), Expect = 2e-23
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTID---------NAPEEKERGITISTS 705
G +GHVDHGKTTLT ALT V ++ + E+R TI P +
Sbjct: 9 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 68
Query: 706 HVEYESEN-KHYAHVDCPGHADYIKNMITGA-AQMDGAILVCSAVDGPMPQTREHILLAR 763
+ +E+E + + +D PGH + M+ GA +++ + P PQTREH++ +
Sbjct: 69 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ 128
Query: 764 QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD 823
+G NI++ NK + V ++ L+ +I+E + EN I+ SAL
Sbjct: 129 IIGQKNIIIAQNKIELVDKEKALENYR-QIKEFIEGT--VAENAPIIPISAL-----HGA 180
Query: 824 NQLGTTSIKKLLDVLDSSIPT 844
N I L+ ++ IPT
Sbjct: 181 N------IDVLVKAIEDFIPT 195
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 74.6 bits (182), Expect = 1e-15
Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 15/187 (8%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGT----TITDWMQQEQERGITITSAS 65
NIG++ HVD GKTT T+ + +H T +++ G TS
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 66
Query: 66 VSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIIC-ASSGIQPQTETVWFQ 124
+F ++ ID PGH + ++DGA+++I +PQT
Sbjct: 67 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA 126
Query: 125 SQKYKVPKM-IFVNKMDRIGANYNNCIIDIKKKF-------NCIVLPIN--FNIGIEENY 174
Q + I NK++ + K+F N ++PI+ I+
Sbjct: 127 LQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLV 186
Query: 175 EGIVDII 181
+ I D I
Sbjct: 187 KAIEDFI 193
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 93.6 bits (232), Expect = 3e-23
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 21/117 (17%)
Query: 847 RITDKPFLMPIEDVFSISG--------RGTVVTGKIERGIVKNGEEIEIVGYKQT----- 893
R D M + F I+ +G V+ G I +G+ K G+EIEI +
Sbjct: 1 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNK 60
Query: 894 -----IKTTITGIEMFKKTLDEGLAGENVGILLR---SVKREEVERGQVLAKIGSIK 942
+ T I + L + G +G+ + + + G V+ G++
Sbjct: 61 TFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLP 117
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 94.4 bits (233), Expect = 3e-22
Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 10/226 (4%)
Query: 9 RN--IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV 66
R+ + ++ HVD GKTT + I + +S + G + T+ E
Sbjct: 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKF 63
Query: 67 SIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ 126
SI + ++ DTPGH FT +R + D A++I+ + G +PQT+ +
Sbjct: 64 SIRETLPGLFFI----DTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILR 119
Query: 127 KYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINK--K 184
Y+ P ++ NK+DRI + + F+ + + + + YE + + + +
Sbjct: 120 MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL-DTKVYELVGKLHEEGFE 178
Query: 185 SFFWKENSIIIKNIDKDQLSAFDYYN-ELMLETLSNNDEFFLEKYI 229
S + + + +SA +L L + +L + +
Sbjct: 179 SERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQL 224
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 77.0 bits (188), Expect = 3e-16
Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 3/148 (2%)
Query: 649 LRSNTKGTIGHVDHGKTTLTAALTK--VSSEIYGGEVRAFDTIDNAPEEKERGITISTSH 706
+RS +GHVDHGKTTL + V+S GG + + + E
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 707 VEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVG 766
+D PGH + G A D AIL+ +G PQT+E + + R
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 767 VPNIVVFLNKADCVQDKELLDLVEMEIR 794
VV NK D + + +
Sbjct: 123 T-PFVVAANKIDRIHGWRVHEGRPFMET 149
|
| >d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Score = 88.3 bits (219), Expect = 5e-22
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 393 PIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVD 452
P PVI ++IEP K DQEKL L + +E P+ +S + TG TI+SGMGEL LEIIVD
Sbjct: 2 PEPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVD 61
Query: 453 RILKENNIKTKISK 466
R+ +E + + K
Sbjct: 62 RLKREFKVDANVGK 75
|
| >d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus thermophilus [TaxId: 274]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Elongation factor/aminomethyltransferase common domain superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain domain: Elongation factor Tu (EF-Tu) species: Thermus thermophilus [TaxId: 274]
Score = 86.9 bits (215), Expect = 3e-21
Identities = 51/75 (68%), Positives = 61/75 (81%)
Query: 947 FECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLL 1006
FE VY+L KEEGGRHT FF+GY+PQFYFRTTDVTG+ +LP VEMV+PGDN+ V L+
Sbjct: 4 FEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELI 63
Query: 1007 SSIAIEIGLRFAIRE 1021
+A+E GLRFAIRE
Sbjct: 64 KPVALEEGLRFAIRE 78
|
| >d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Score = 86.4 bits (214), Expect = 4e-21
Identities = 34/66 (51%), Positives = 49/66 (74%)
Query: 591 ILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLR 650
ILEPIM+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FGY+TDLR
Sbjct: 2 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLR 61
Query: 651 SNTKGT 656
S T+G
Sbjct: 62 SKTQGR 67
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} Length = 121 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Score = 85.9 bits (212), Expect = 2e-20
Identities = 44/95 (46%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIND 357
+L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+LRM AN ++++ +
Sbjct: 27 LAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEE 86
Query: 358 AHFGDIVVIVGLKESSTGDTLCSLSE-NIQLENIE 391
GD+ +VGLKE+ TGDTL + LE+IE
Sbjct: 87 LKAGDLGAVVGLKETITGDTLVGEDAPRVILESIE 121
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} Length = 114 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Score = 82.3 bits (203), Expect = 2e-19
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 21/112 (18%)
Query: 847 RITDKPFLMPIEDVFSISG--------RGTVVTGKIERGIVKNGEEIEIVGYKQT----- 893
R + +M + F ++ +G V+ G I +G+ K +EI+++ +
Sbjct: 1 RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGK 60
Query: 894 -----IKTTITGIEMFKKTLDEGLAGENVGILLR---SVKREEVERGQVLAK 937
I T I+ I + E G V I S+ + + G ++
Sbjct: 61 VSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITL 112
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Score = 81.0 bits (200), Expect = 3e-19
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 848 ITDKPFL-MPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKK 906
++ KP + +E+V +I G V+ G +E G++ G +++ + I IE ++
Sbjct: 4 LSKKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKG----PSGIGGIVRIERNRE 58
Query: 907 TLDEGLAGENVGILLRSVKREEVERGQVLA 936
++ +AG+ +GI + K +V++G VL
Sbjct: 59 KVEFAIAGDRIGISIEG-KIGKVKKGDVLE 87
|
| >d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 77 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 78.0 bits (192), Expect = 2e-18
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 393 PIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVD 452
P P + +++ P + D+ +L L+K +EDPSL L TGE +L G GELHL +
Sbjct: 2 PDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKE 61
Query: 453 RILKENNIKTKISKPQV 469
R L++ ++ + S P+V
Sbjct: 62 R-LQDYGVEVEFSVPKV 77
|
| >d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 79 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.6 bits (191), Expect = 4e-18
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIV 451
+ PV+ +++E ND KL+ L++ K DP +L+ + +GE I++G GELHLEI +
Sbjct: 3 SVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPC-VLTYMSESGEHIVAGTGELHLEICL 61
Query: 452 DRILKE-NNIKTKISKP 467
+ + + KIS P
Sbjct: 62 QDLEHDHAGVPLKISPP 78
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 78.2 bits (192), Expect = 5e-18
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIND 357
++ VFK+ DPF+G ++++R+Y G +K GD + + +V+ ++ +
Sbjct: 10 PLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVRLPHL--YVPMGKDLLEVEE 67
Query: 358 AHFGDIVVIVGLKESSTGDTLCS 380
A G ++ + + G L
Sbjct: 68 AEAGFVLGVPKAEGLHRGMVLWQ 90
|
| >d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 75.0 bits (184), Expect = 5e-17
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 591 ILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLR 650
+LEPI +++V P E +G V+ D+ +RG I + ++++ +PL E+ Y L
Sbjct: 2 LLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALP 61
Query: 651 SNTKGT 656
T G
Sbjct: 62 GLTGGA 67
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 72.7 bits (178), Expect = 3e-16
Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 852 PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEG 911
P++ V + G + GIV G+EI ++ ++ + + I F+ L++
Sbjct: 6 DLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKS--SRVKSIVTFEGELEQA 63
Query: 912 LAGENVGILLRSVKREEVERGQVLAKIGS 940
G+ V + + ++ RG +L +
Sbjct: 64 GPGQAVTLTME--DEIDISRGDLLVHADN 90
|
| >d1n0ua3 d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), domain IV {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor 2 (eEF-2), domain IV species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.1 bits (171), Expect = 2e-14
Identities = 16/162 (9%), Positives = 46/162 (28%), Gaps = 8/162 (4%)
Query: 429 SINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQEGKYIKQ 488
++ + + +T LS H I + + + I ++ ++ K + +
Sbjct: 6 TVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFK----ARARIMAD 61
Query: 489 SGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGY 548
G I + + + E ++ G + G
Sbjct: 62 DYGWDVTDARKIWCFGP--DGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGE 119
Query: 549 PVIKIKVFLVNGSFHSVDSSEYAFK--NAAAIALKDALKKAN 588
+ ++V +++ + H+ + A A+
Sbjct: 120 EMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLAD 161
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.2 bits (166), Expect = 4e-14
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 298 FVSLVFKIFHDPFLGSL-SFIRIYSGFIKVGDLVYNSTKK---------VKEKIFRILRM 347
+ V K+ G +F R+++G +K G V + I R++ M
Sbjct: 35 LMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLM 94
Query: 348 FANSKKDINDAHFGDIVVIVGLKES-STGDTLCSLSENIQLEN 389
+ I+D G+I+ +VG+ + TL + ++
Sbjct: 95 MGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKV 137
|
| >d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.6 bits (162), Expect = 8e-14
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGII--NTIIDHENFKIINSYIPLRELFGYSTDLR 650
EP+ VE+ P + +G + +NKKRG + + +Y+P+ E FG++ +LR
Sbjct: 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELR 60
Query: 651 SNTKGT 656
T G
Sbjct: 61 QATGGQ 66
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 65.5 bits (158), Expect = 1e-12
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 23/191 (12%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
G GH+DHGKTTL+ LT+++S D PE ++RGITI ++ EN
Sbjct: 9 GIFGHIDHGKTTLSKVLTEIASTSA---------HDKLPESQKRGITIDIGFSAFKLENY 59
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
VD PGHAD I+ +++ A +D A++V A +GP QT EH+L+ +P ++ +
Sbjct: 60 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP--IIVV 117
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
E + EM ++ +L + +N+ I+ SA + +L
Sbjct: 118 ITKSDNAGTEEIKRTEMIMKSILQST-HNLKNSSIIPISAK-----TGFG------VDEL 165
Query: 835 LDVLDSSIPTP 845
+++ +++
Sbjct: 166 KNLIITTLNNA 176
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 63.2 bits (152), Expect = 7e-12
Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 25/183 (13%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+GI H+D GKTT ++ + + T+ D + + Q+RGITI F
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEIA-----------STSAHDKLPESQKRGITID----IGF 51
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
Y I ++D PGH D V + ++D A+I++ A G + QT +
Sbjct: 52 SAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFN 111
Query: 130 VPKMIFVNKMDRIGANYNNCIIDIKKKF--------NCIVLPIN--FNIGIEENYEGIVD 179
+P ++ + K D G I K N ++PI+ G++E I+
Sbjct: 112 IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIIT 171
Query: 180 IIN 182
+N
Sbjct: 172 TLN 174
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 65.8 bits (159), Expect = 2e-12
Identities = 29/217 (13%), Positives = 54/217 (24%), Gaps = 45/217 (20%)
Query: 657 IGHVDHGKTTLTAALTK--------------VSSEIYGGEV----RAFDTIDNAPEEK-- 696
+G GKTTLT + + E R F T++ E
Sbjct: 6 VGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYG 65
Query: 697 ------------ERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDG---- 740
+ + + Y +D PG + G M+
Sbjct: 66 PNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYP 125
Query: 741 -AILVCSAVDGPMPQTREHILLAR-----QVGVPNIVVFLNKADCVQDKELLDLVEMEIR 794
+ + P + ++G I LNK D + ++E +
Sbjct: 126 LVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPA-LNKVDLLSEEEK--ERHRKYF 182
Query: 795 ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSI 831
E + + + G + L +
Sbjct: 183 EDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRV 219
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 57.7 bits (138), Expect = 1e-09
Identities = 23/184 (12%), Positives = 53/184 (28%), Gaps = 36/184 (19%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTT---------ITDWMQQEQERGI 59
+ + +GKTT T Y ++K+ V G + +++ E+
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 60 TITSASVSIF---------------WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDG- 103
+ + + +IDTPG ++ + E +R+++
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122
Query: 104 ----AVIIICASSGIQPQTETVWF-----QSQKYKVPKMIFVNKMDRIGANYNNCIIDIK 154
V I +P + + +NK+D +
Sbjct: 123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYF 182
Query: 155 KKFN 158
+ +
Sbjct: 183 EDID 186
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 46.6 bits (109), Expect = 3e-06
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 7/161 (4%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
+G + GK+TL A+ + + + + +++
Sbjct: 12 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 71
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
+ + I A D ++V A G Q + L + G ++VVF
Sbjct: 72 VEPRTVEKYSNYRVVDSIEKA---DVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSAL 815
V ++ D RE L D+ + ++ SA
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDY----SPLIFTSAD 165
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 40.8 bits (94), Expect = 3e-04
Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 9/146 (6%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
+ I+ + GK+T IL + GTT + G +F
Sbjct: 10 KVAIVGRPNVGKSTLFNAIL---NKERALVSPIPGTTRDPVDDEVFIDGRKY------VF 60
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+ + + V S+ D VI++ A+ GI Q + + ++
Sbjct: 61 VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRG 120
Query: 130 VPKMIFVNKMDRIGANYNNCIIDIKK 155
++ NK D + K
Sbjct: 121 RASVVVFNKWDLVVHREKRYDEFTKL 146
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 44.4 bits (105), Expect = 6e-06
Identities = 10/84 (11%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGL 912
+ + VF S + ++ G+++ G + + + ++ + L
Sbjct: 7 IRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMNDDGETVGT--VESMQDKGENLKSAS 63
Query: 913 AGENVGILLRSV-KREEVERGQVL 935
G+ V + ++ + + G L
Sbjct: 64 RGQKVAMAIKDAVYGKTIHEGDTL 87
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.5 bits (101), Expect = 4e-05
Identities = 25/219 (11%), Positives = 63/219 (28%), Gaps = 49/219 (22%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW 70
I I ++GKT+ + + + +
Sbjct: 6 IIIAGPQNSGKTSLLTLLT----------------------TDSVRPTVVSQEPLSAADY 43
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF------- 123
+ + + + ++ + + G + ++ ++ + T T F
Sbjct: 44 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 103
Query: 124 --QSQKYKVPKMIFVNKMDRIGANYNNCIID--------IKKKFNCIVLPINFNIGIEEN 173
S + + +I NK + A + I D + ++ + + I E+
Sbjct: 104 TESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDY 163
Query: 174 YEGIVDIINKKSFF----------WKENSIIIKNIDKDQ 202
E +D++ F E SI + I + +
Sbjct: 164 AENTLDVLQSTDGFKFANLEASVVAFEGSINKRKISQWR 202
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (89), Expect = 0.001
Identities = 20/186 (10%), Positives = 49/186 (26%), Gaps = 8/186 (4%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
G + GKT+L LT VR + + T Y
Sbjct: 9 AGPQNSGKTSLLTLLT-------TDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61
Query: 717 AHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNK 776
D + + + + + G+ I++ NK
Sbjct: 62 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNK 120
Query: 777 ADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLD 836
++ + + + E+ + ++ V ++ + ++
Sbjct: 121 SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFA 180
Query: 837 VLDSSI 842
L++S+
Sbjct: 181 NLEASV 186
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 38.6 bits (88), Expect = 0.001
Identities = 23/176 (13%), Positives = 58/176 (32%), Gaps = 14/176 (7%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW 70
+ I+ + GK+T +++ I E G T + +
Sbjct: 3 VLIVGRPNVGKSTLFNKLV---KKKKAIVEDEEGVTRDPVQDTVEWY---------GKTF 50
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV 130
++ + + +R D + ++ GI + E++ +K V
Sbjct: 51 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTV 110
Query: 131 PKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN--FNIGIEENYEGIVDIINKK 184
++ NK + + ++ +P++ NI ++ E I+ + +K
Sbjct: 111 DTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 166
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.5 bits (88), Expect = 0.002
Identities = 26/196 (13%), Positives = 54/196 (27%), Gaps = 23/196 (11%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
+G D GKT L L G +I + + V N
Sbjct: 6 VGLCDSGKTLLFVRLLT------GQYRDTQTSI---------TDSSAIYKVNNNRGNSLT 50
Query: 717 AHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV-------GVPN 769
+ + + + + V + L + + P+
Sbjct: 51 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS 110
Query: 770 IVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALE-GKDDNQLGT 828
+++ NK D K + + +EL T + S+ + GK +
Sbjct: 111 LLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEF 170
Query: 829 TSIKKLLDVLDSSIPT 844
+ + ++ L+ S
Sbjct: 171 SQLPLKVEFLECSAKG 186
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (87), Expect = 0.003
Identities = 21/149 (14%), Positives = 38/149 (25%), Gaps = 8/149 (5%)
Query: 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVI---IICASSGIQP 116
TI E++ + I DT G F R G +I + S
Sbjct: 38 TIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGV 97
Query: 117 QTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF-----NIGIE 171
+ + V + K+ + +P + +E
Sbjct: 98 KMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE 157
Query: 172 ENYEGIVDIINKKSFFWKENSIIIKNIDK 200
+ + + I + N K DK
Sbjct: 158 DAFLTMARQIKESMSQQNLNETTQKKEDK 186
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (85), Expect = 0.004
Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 7/132 (5%)
Query: 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-----I 114
TI ++N K + I DT G F R G +++ + I
Sbjct: 34 TIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNI 93
Query: 115 QPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN--FNIGIEE 172
+ +TV + ++ + + K+ + + + + E
Sbjct: 94 KQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNE 153
Query: 173 NYEGIVDIINKK 184
+ + +I +K
Sbjct: 154 IFFTLAKLIQEK 165
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1021 | |||
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 100.0 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 100.0 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 100.0 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 100.0 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.98 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.97 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.97 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.97 | |
| d2bv3a3 | 121 | Elongation factor G (EF-G), domain IV {Thermus the | 99.97 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.96 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.96 | |
| d2dy1a3 | 115 | Elongation factor G (EF-G), domain IV {Thermus the | 99.95 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.94 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.94 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.94 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.94 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.93 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.93 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.93 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.92 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.92 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.92 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.91 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.9 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.88 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.87 | |
| d2dy1a4 | 77 | Elongation factor G (EF-G) {Thermus thermophilus, | 99.86 | |
| d1n0ua4 | 79 | Elongation factor 2 (eEF-2) {Baker's yeast (Saccha | 99.84 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.83 | |
| d2bv3a4 | 75 | Elongation factor G (EF-G) {Thermus thermophilus [ | 99.83 | |
| d1efca1 | 92 | Elongation factor Tu (EF-Tu), domain 2 {Escherichi | 99.82 | |
| d1d2ea1 | 98 | Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t | 99.82 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.82 | |
| d1f60a1 | 94 | Elongation factor eEF-1alpha, domain 2 {Baker's ye | 99.82 | |
| d2bv3a1 | 121 | Elongation factor G (EF-G), domain II {Thermus the | 99.81 | |
| d2c78a1 | 100 | Elongation factor Tu (EF-Tu), domain 2 {Thermus th | 99.81 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.78 | |
| d1n0ua3 | 165 | Elongation factor 2 (eEF-2), domain IV {Baker's ye | 99.78 | |
| d1jnya1 | 95 | Elongation factor eEF-1alpha, domain 2 {Archaeon S | 99.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.74 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.74 | |
| d1wb1a1 | 92 | Elongation factor SelB, domains 2 and 4 {Methanoco | 99.73 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.73 | |
| d2dy1a1 | 103 | Elongation factor G (EF-G), domain II {Thermus the | 99.71 | |
| d1kk1a1 | 121 | Initiation factor eIF2 gamma subunit, domain II {A | 99.71 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.7 | |
| d1xe1a_ | 91 | Hypothetical protein PF0907 {Pyrococcus furiosus [ | 99.69 | |
| d1n0ua1 | 138 | Elongation factor 2 (eEF-2), domain II {Baker's ye | 99.69 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.68 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.67 | |
| d1r5ba1 | 95 | Eukaryotic peptide chain release factor ERF2, post | 99.67 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.67 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.66 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.66 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.66 | |
| d1s0ua1 | 118 | Initiation factor eIF2 gamma subunit, domain II {A | 99.65 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.64 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.62 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.62 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.62 | |
| d1zunb1 | 92 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.6 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.6 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.6 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.59 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.58 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.58 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.57 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.56 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.56 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.56 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.56 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.55 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.55 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.55 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.55 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d2bv3a5 | 89 | Elongation factor G (EF-G) {Thermus thermophilus [ | 99.54 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.54 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.53 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.53 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.52 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d2dy1a5 | 96 | Elongation factor G (EF-G) {Thermus thermophilus, | 99.52 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.51 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d2qn6a1 | 114 | Initiation factor eIF2 gamma subunit, domain II {S | 99.51 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.51 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.5 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.49 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.49 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.48 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.48 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.48 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.47 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.47 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1d2ea2 | 103 | Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mi | 99.47 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.47 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.47 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.47 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.46 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.45 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.45 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.44 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.43 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.43 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d2c78a2 | 93 | Elongation factor Tu (EF-Tu) {Thermus thermophilus | 99.43 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.43 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.42 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.42 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.41 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.41 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.4 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.39 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.39 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.39 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.38 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.37 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.36 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.36 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.35 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.35 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.35 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.33 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.32 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.31 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.31 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.3 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.29 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.29 | |
| d1n0ua5 | 117 | Elongation factor 2 (eEF-2) {Baker's yeast (Saccha | 99.28 | |
| d1f60a2 | 107 | Elongation factor eEF-1alpha, C-terminal domain {B | 99.27 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.25 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.25 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.24 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.23 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.23 | |
| d1jnya2 | 107 | Elongation factor eEF-1alpha, C-terminal domain {A | 99.19 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.18 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.15 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.15 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.14 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.11 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.1 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.09 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.08 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.06 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.94 | |
| d1g7sa2 | 128 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 98.94 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 98.91 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.9 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.85 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.79 | |
| d1f60a1 | 94 | Elongation factor eEF-1alpha, domain 2 {Baker's ye | 98.77 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.77 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.77 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.72 | |
| d1zunb2 | 105 | Sulfate adenylate transferase subunit cysN/C, EF-T | 98.66 | |
| d1jnya1 | 95 | Elongation factor eEF-1alpha, domain 2 {Archaeon S | 98.63 | |
| d1r5ba2 | 68 | Eukaryotic peptide chain release factor ERF2, C-te | 98.6 | |
| d1r5ba1 | 95 | Eukaryotic peptide chain release factor ERF2, post | 98.57 | |
| d2bv3a1 | 121 | Elongation factor G (EF-G), domain II {Thermus the | 98.55 | |
| d1efca1 | 92 | Elongation factor Tu (EF-Tu), domain 2 {Escherichi | 98.52 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.49 | |
| d2dy1a1 | 103 | Elongation factor G (EF-G), domain II {Thermus the | 98.49 | |
| d2c78a1 | 100 | Elongation factor Tu (EF-Tu), domain 2 {Thermus th | 98.4 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.37 | |
| d1d2ea1 | 98 | Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t | 98.37 | |
| d1wb1a1 | 92 | Elongation factor SelB, domains 2 and 4 {Methanoco | 98.27 | |
| d1zunb1 | 92 | Sulfate adenylate transferase subunit cysN/C, EF-T | 98.26 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.21 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.16 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.15 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.14 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.09 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.08 | |
| d1xe1a_ | 91 | Hypothetical protein PF0907 {Pyrococcus furiosus [ | 98.08 | |
| d1n0ua1 | 138 | Elongation factor 2 (eEF-2), domain II {Baker's ye | 98.06 | |
| d1kk1a1 | 121 | Initiation factor eIF2 gamma subunit, domain II {A | 97.99 | |
| d1s0ua1 | 118 | Initiation factor eIF2 gamma subunit, domain II {A | 97.94 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 97.92 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 97.88 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 97.82 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.79 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 97.79 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 97.74 | |
| d1d1na_ | 99 | Initiation factor IF2/eIF5b, domains 2 and 4 {Baci | 97.65 | |
| d2qn6a1 | 114 | Initiation factor eIF2 gamma subunit, domain II {S | 97.23 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.14 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.13 | |
| d1g7sa1 | 101 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 97.06 | |
| d1g7sa2 | 128 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 97.02 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.01 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 97.0 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.0 | |
| d1g7sa1 | 101 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 96.99 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.97 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.97 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.96 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.91 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.76 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.76 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 96.59 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.54 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 95.78 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.78 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.76 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.71 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.68 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 95.32 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.25 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.0 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.79 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.76 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.55 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 93.9 | |
| d1d1na_ | 99 | Initiation factor IF2/eIF5b, domains 2 and 4 {Baci | 93.77 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 93.49 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.3 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.73 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 92.4 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 92.15 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.02 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.01 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.94 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 91.7 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.47 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 91.4 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.32 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.18 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 91.02 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.78 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.09 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.86 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.72 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 89.63 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 89.61 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.41 | |
| d1kk1a2 | 89 | Initiation factor eIF2 gamma subunit {Archaeon Pyr | 89.06 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 88.96 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 88.69 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 88.55 | |
| d2qn6a2 | 95 | Initiation factor eIF2 gamma subunit {Sulfolobus s | 88.43 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 88.38 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 88.38 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 88.26 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 87.96 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 87.62 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 87.56 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 87.52 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 87.39 | |
| d1vi7a2 | 71 | Hypothetical protein YigZ, C-terminal domain {Esch | 87.39 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 87.33 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 87.2 | |
| d1s0ua2 | 90 | Initiation factor eIF2 gamma subunit {Archaeon Met | 87.17 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 87.17 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 87.11 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 87.07 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 87.06 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 86.9 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 86.83 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 86.79 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 86.77 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 86.56 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 86.52 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 86.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 85.97 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 85.95 | |
| d1wb1a3 | 116 | Elongation factor SelB, domain 3 {Methanococcus ma | 85.95 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 85.73 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 85.66 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 85.39 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 85.18 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.0 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 84.97 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 84.79 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 84.66 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 84.59 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 84.57 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 84.29 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.28 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 84.11 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 83.81 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 83.44 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 83.21 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 82.75 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 82.6 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 82.6 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 82.43 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 82.41 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 82.39 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 82.03 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 81.98 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 81.14 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 81.05 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 80.67 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 80.5 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 80.29 |
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.8e-58 Score=488.32 Aligned_cols=271 Identities=46% Similarity=0.795 Sum_probs=245.7
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
++++||||+|+||+|||||||+++|++.+|.+.+.|++++|++++|+.++|++||+||.++..++.|+ ++++||+|
T Consensus 2 ~~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~----~~~~n~iD 77 (276)
T d2bv3a2 2 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK----DHRINIID 77 (276)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEET----TEEEEEEC
T ss_pred ChhhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccC----CeEEEEec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.||..++.++++.+|+||+||||.+|++.||+.+|+++.++++|+++|+||||++++++.++++++++.|+.+++|
T Consensus 78 tPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp 157 (276)
T d2bv3a2 78 APGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVV 157 (276)
T ss_dssp CCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEE
T ss_pred CCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccccccchhHHHHHHHhCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCceeeEEecccceeeeecCCC---eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENS---IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIK 239 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~ 239 (1021)
+|+|++.++.|.|++|+++++.+.|.++. ....++|++..+...+++.+|+|.+++.||++|++||++ +++.+++.
T Consensus 158 ~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~l~e~vae~Dd~L~e~yle~~e~~~eel~ 237 (276)
T d2bv3a2 158 MQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 237 (276)
T ss_dssp CEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHH
T ss_pred EEecccCCCceeEEeeccceEEEEecCCCCccceeccCchHHHHHHHHHHHHHhhhhhcccHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999999997643 677899999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCC
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPS 278 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~ 278 (1021)
..++++++.++++|||||||.+|.||++|||+|++++||
T Consensus 238 ~~l~~a~~~g~i~PV~~GSA~~n~GV~~LLD~i~~~~PS 276 (276)
T d2bv3a2 238 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS 276 (276)
T ss_dssp HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCcEEEEEEeECCCCcCHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999996
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=100.00 E-value=1.3e-54 Score=460.76 Aligned_cols=265 Identities=25% Similarity=0.497 Sum_probs=259.4
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
||||||+||+|||||||+++|++.+|.+.+.|++++|++++|+.++|++||+|+.++..++.|+ ++++||||||||
T Consensus 2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~----~~~~n~iDtPGh 77 (267)
T d2dy1a2 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR----GHRVFLLDAPGY 77 (267)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET----TEEEEEEECCCS
T ss_pred eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccc----ccceeEEccCch
Confidence 8999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeee
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFN 167 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 167 (1021)
.||..++.++++.+|+||+||||.+|++.||+++|+++.+.++|+++|+||||+ .+++.+.+.++++.|+ +++|+++|
T Consensus 78 ~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~-~~~~~~~l~~~~~~lg-~~vp~~~P 155 (267)
T d2dy1a2 78 GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK-GGDYYALLEDLRSTLG-PILPIDLP 155 (267)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGG-CCCHHHHHHHHHHHHC-SEEECEEE
T ss_pred hhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhcccccccccccccc-cccchhhhhhHHHHhc-cCcCeEee
Confidence 999999999999999999999999999999999999999999999999999999 5799999999999998 69999999
Q ss_pred cccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHHHHHH
Q psy5021 168 IGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKLV 246 (1021)
Q Consensus 168 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~~~~~ 246 (1021)
++.++.|.|++|+++++.+.|+.+.....++|++..+.+.++|++|+|.+++.||+++++|+++ +++.+++...+++++
T Consensus 156 i~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~~~~~r~~L~E~vae~Dd~Lle~yle~~~l~~eel~~~l~~ai 235 (267)
T d2dy1a2 156 LYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAV 235 (267)
T ss_dssp EEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred eccCCceeEEeecCcceEEEecCCCCceeeCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 9999999999999999999999888888899999999999999999999999999999999999 999999999999999
Q ss_pred hcCceeEEEeccccCcccHHHHHHHHHHhCCC
Q psy5021 247 LKNKIIPIMCGSSLKNKGIEFLLNSICEYLPS 278 (1021)
Q Consensus 247 ~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~ 278 (1021)
+.+.++|||||||.++.|+++|||.|++++||
T Consensus 236 ~~g~i~PV~~GSA~~n~GV~~LLd~i~~~~Ps 267 (267)
T d2dy1a2 236 RRGLLYPVALASGEREIGVLPLLELILEALPS 267 (267)
T ss_dssp HTTSCEEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HcCcEEEEEeCcCCCCcCHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999996
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.2e-36 Score=327.69 Aligned_cols=261 Identities=28% Similarity=0.393 Sum_probs=187.1
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----------
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------- 72 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------- 72 (1021)
+.++||||||+||+|||||||+++|++.+|.+...+... ..++|++++|++||+|++++.+++.|..
T Consensus 13 ~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~--~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~ 90 (341)
T d1n0ua2 13 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGE--ARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQK 90 (341)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC--------------------CCCBCCCEEEEEEECCHHHHHHCSSC
T ss_pred CcccCcEEEEEeCCCCcHHHHHHHHHHHCCCcccccccc--ccccccchhHHhcCceEeCCEEEEEeccCcccccchhcc
Confidence 578999999999999999999999999999988765443 4578999999999999999999998853
Q ss_pred -ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHH
Q psy5021 73 -NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCII 151 (1021)
Q Consensus 73 -~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~ 151 (1021)
+++++.+||||||||.||..++.++++.+|+||+||||.+|++.||+++|+++...++|+++|+||||+..++++...+
T Consensus 91 ~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~~el~~~~~ 170 (341)
T d1n0ua2 91 TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKE 170 (341)
T ss_dssp CCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHH
T ss_pred ccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccccccHHhhHH
Confidence 2357899999999999999999999999999999999999999999999999999999999999999999988877788
Q ss_pred HHHHHhCCceeeeeeecccCC----------------ce----eeEE----------------ecccceeeeecCCC---
Q psy5021 152 DIKKKFNCIVLPINFNIGIEE----------------NY----EGIV----------------DIINKKSFFWKENS--- 192 (1021)
Q Consensus 152 ~i~~~l~~~~~~~~~p~~~~~----------------~~----~g~i----------------d~~~~~~~~~~~~~--- 192 (1021)
+++++++..+.+++.|++... .| .|+. +...+...+|++.+
T Consensus 171 ~~~~~l~~~i~~vn~~i~~~~~~~~~~~~~~P~~gnV~FaSa~~g~~Ftl~~fa~~y~~k~~~~~~~l~~~LWGd~y~~~ 250 (341)
T d1n0ua2 171 DLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNP 250 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEET
T ss_pred HHHHHHcCccccccceeeecccccccccccCcccCceEecccccCeEEeeHHHHHHHHHHhCCCHHHHHHHhccCccccc
Confidence 888887766666666654210 01 1111 11112233454332
Q ss_pred ----eee-------ccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC---CCCHHHHHH---HHHHHHhcCceeEEE
Q psy5021 193 ----III-------KNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN---NYSINDIKN---SIRKLVLKNKIIPIM 255 (1021)
Q Consensus 193 ----~~~-------~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~---~~~~~~~~~---~~~~~~~~~~~~Pv~ 255 (1021)
+.. .+....+.+++.+..++++.++.+.+.+-++++++. .++.++... .+-+.+. ..|+|.
T Consensus 251 ~~kk~~~~~~~~~~~~lk~~FVqfILepI~ki~~~~~~~~~~~l~k~l~~l~i~l~~~~~~~~~k~llk~v~-~~~~~~- 328 (341)
T d1n0ua2 251 KTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVM-RKFLPA- 328 (341)
T ss_dssp TTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHH-HHHSBH-
T ss_pred ccceeeccCCcccCCcccceeeeeeHHHHHHHHHHHhhcchhHHHHHHHHcCcccChHhhccchHHHHHHHH-HHHcCc-
Confidence 111 123445888999999999999988888888888875 444443321 1222222 356664
Q ss_pred eccccCcccHHHHHHHHHHhCC
Q psy5021 256 CGSSLKNKGIEFLLNSICEYLP 277 (1021)
Q Consensus 256 ~~Sa~~~~Gi~~Ll~~i~~~lP 277 (1021)
-+.|+++++.++|
T Consensus 329 ---------~~~ll~~iv~~iP 341 (341)
T d1n0ua2 329 ---------ADALLEMIVLHLP 341 (341)
T ss_dssp ---------HHHHHHHHHHHSC
T ss_pred ---------hhHHHHHHHHhCc
Confidence 3689999999998
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=100.00 E-value=1.2e-33 Score=287.14 Aligned_cols=193 Identities=63% Similarity=1.041 Sum_probs=173.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+|++||+|||||||+++|++.....+.......+.++..++|+++|+|++.+...|+++++.++++|||||.+|.++|
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~ 83 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNM 83 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHH
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHHH
Confidence 56899999999999999999876555555555555667889999999999999999999999999999999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVI 811 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~ 811 (1021)
+++++.+|+|||||||.+|+++||++|+.++..++++++||++||||+++++++++.++.+++.+++.+++..+.+++++
T Consensus 84 ~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~ 163 (196)
T d1d2ea3 84 ITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIV 163 (196)
T ss_dssp HHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEE
T ss_pred HHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEE
Confidence 99999999999999999999999999999999999988999999999987677888899999999999999888899999
Q ss_pred ecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 812 GSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 812 iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
+||++|.+..+ ....|+++++||++|++++|.|
T Consensus 164 iSa~~g~~~~~-~~~~~~~~~~Lldai~~~iP~P 196 (196)
T d1d2ea3 164 GSALCALEQRD-PELGLKSVQKLLDAVDTYIPVP 196 (196)
T ss_dssp CCHHHHHTTCC-TTTTHHHHHHHHHHHHHHSCCC
T ss_pred EEccccccccC-cccccCCHHHHHHHHHhhCCCC
Confidence 99999865433 3467889999999999988765
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=1.8e-32 Score=281.27 Aligned_cols=145 Identities=29% Similarity=0.448 Sum_probs=130.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.-|||++||+|||||||+++|++.+|.+...|++..+ ..+|+.++|++||+|++++.+++.|+ +++++|||||||
T Consensus 3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~-~~~d~~~eE~~rgiTi~~~~~~~~~~----~~~i~iiDtPGh 77 (204)
T d2c78a3 3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDY-GDIDKAPEERARGITINTAHVEYETA----KRHYSHVDCPGH 77 (204)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCH-HHHSCSHHHHHHTCCCSCEEEEEECS----SCEEEEEECCCS
T ss_pred CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhh-hhcccchHHhcCCeEEEeeEEEEEeC----CeEEEEEeCCCc
Confidence 3599999999999999999999999988888877654 56899999999999999999999999 999999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC--HHHHHHHHHHHh
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN--YNNCIIDIKKKF 157 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~--~~~~~~~i~~~l 157 (1021)
.||..++.++++.+|+|||||||.+|++.||+++|.++...++| +++++||||+.... ++++.+++++.+
T Consensus 78 ~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l 150 (204)
T d2c78a3 78 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 150 (204)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 46679999996533 455666666655
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=1.4e-31 Score=274.74 Aligned_cols=192 Identities=67% Similarity=1.013 Sum_probs=163.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccc-cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
+.+|++||+|||||||+++|+........ +.....+.+|..++|++||+|++.....++++++.++|+|||||.+|.++
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~ 83 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKN 83 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHH
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHH
Confidence 57899999999999999999865443332 33333445799999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
|+++++.||+|||||||.+|++.||++||.++..+|+|++||++||||+++++++++.+.+++.+++..+++....++++
T Consensus 84 ~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i 163 (204)
T d2c78a3 84 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVI 163 (204)
T ss_dssp HHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred HHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcccceee
Confidence 99999999999999999999999999999999999999899999999998877789999999999999999987889999
Q ss_pred EecccccccC-----CCCC--ccCcchHHHHHHhhhccCC
Q psy5021 811 IGSALLALEG-----KDDN--QLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 811 ~iSa~~~~~~-----~~~~--~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++||+.+.+. .... ....+.+.+|++++++++|
T Consensus 164 ~~sa~~~~~~~~~~~~~~~~~~~~~~~I~eLLdaIde~iP 203 (204)
T d2c78a3 164 RGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 203 (204)
T ss_dssp ECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred eeechhhhhhhhcCccccCCcccchhhHHHHHHHHHHhCc
Confidence 9999876431 1111 1112356789999988776
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.3e-31 Score=280.63 Aligned_cols=198 Identities=33% Similarity=0.433 Sum_probs=168.3
Q ss_pred cceeeeeeeeeccchhhhhhhccccccc---------------cccccccccccCCchhhhhcCceEeeeEEEEeeCCeE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEI---------------YGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH 715 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~---------------~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~ 715 (1021)
.+++|++||+|||||||+++|+.....+ ..+.+...+.+|..++|++||+|++.+...|++++++
T Consensus 6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 85 (239)
T d1f60a3 6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 85 (239)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence 4689999999999999999997533222 2344445567899999999999999999999999999
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-------cHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHH
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-------MPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLD 787 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-------~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~ 787 (1021)
++|+|||||.+|.++|+++++.+|+|||||||.+|. .+||++|+.++..+|+|++||++||||+++ ++++++
T Consensus 86 i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~~~~ 165 (239)
T d1f60a3 86 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQ 165 (239)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHHHHH
Confidence 999999999999999999999999999999999884 479999999999999999999999999987 557889
Q ss_pred HHHHHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCc------------chHHHHHHhhhccCCCCCCCC
Q psy5021 788 LVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGT------------TSIKKLLDVLDSSIPTPNRIT 849 (1021)
Q Consensus 788 ~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~------------~~i~~Ll~~l~~~l~~~~~~~ 849 (1021)
++.+++..++...+++...++++|+||..|.|..+.. ...| ..+++|+++|+. ++.|.|++
T Consensus 166 ~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~~s~~~~wykg~~~~~~~~~~~~~TLlEaLD~-I~~P~R~t 239 (239)
T d1f60a3 166 EIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPT 239 (239)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCCCT
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcceeccccCccccCcccccccCccccccHHHHhhC-CCCCCCCC
Confidence 9999999999999998888999999999886653321 1222 345789999976 77787763
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.97 E-value=4.6e-31 Score=268.00 Aligned_cols=130 Identities=31% Similarity=0.414 Sum_probs=114.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.||||+||+|||||||+++|++..+.. .+......+.+|+.++|++||+|++.+...+.|. ++.++++|||||
T Consensus 3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~--~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~----~~~~~~iDtPGh 76 (196)
T d1d2ea3 3 HVNVGTIGHVDHGKTTLTAAITKILAEG--GGAKFKKYEEIDNAPEERARGITINAAHVEYSTA----ARHYAHTDCPGH 76 (196)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHT--TSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS----SCEEEEEECSSH
T ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHHHc--CcchhhhhhhcccchhhcCCCccCCcceEEEEec----eeeEEeecCcch
Confidence 3699999999999999999998654321 1122334567889999999999999999999999 999999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCC-CEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV-PKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~-p~iiviNK~D~~~ 143 (1021)
.+|..++.++++.+|+||+||||.+|+++||+++|.++...++ |+|+++||||+..
T Consensus 77 ~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~ 133 (196)
T d1d2ea3 77 ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (196)
T ss_dssp HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred HHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccc
Confidence 9999999999999999999999999999999999999999887 5677899999863
|
| >d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=3e-30 Score=236.78 Aligned_cols=121 Identities=52% Similarity=0.958 Sum_probs=119.6
Q ss_pred CeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCccc
Q psy5021 467 PQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVL 546 (1021)
Q Consensus 467 p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~ 546 (1021)
|+|+|||||+++++.+++|+||+||++|||+|+++++|++ +|+|+.|.+++.++.+|++|++||++|+++++.+|||.
T Consensus 1 PqV~YREtI~~~~~~~~~~~rq~gg~~~~a~V~l~veP~~--~g~g~~f~~~v~~~~ip~~~~~ave~g~~~a~~~G~l~ 78 (121)
T d2bv3a3 1 PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLI 78 (121)
T ss_dssp CEECCEEECSSCEEEEEEEEEECSSSEEEEEEEEEEEECS--TTCCEEEEECCCTTSSCGGGHHHHHHHHHHHTTSCSSS
T ss_pred CCccceeccCCcEEEEEEEEEecCCCCeeEEEEEEEEEee--CCCCcEEeeeecCCCCCHHHHHHHHHHHHHHHHhcCcC
Confidence 8999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred ccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCc
Q psy5021 547 GYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANS 589 (1021)
Q Consensus 547 g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~ 589 (1021)
||||+||+|+|.|+.+|++||++++|+.||..|+++|+.+|+|
T Consensus 79 G~pv~dv~v~l~~g~~h~~dSs~~af~~Aa~~A~~~A~~kA~P 121 (121)
T d2bv3a3 79 GFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDP 121 (121)
T ss_dssp SCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCEeEEEEEEEEEEEccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999987
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.96 E-value=2e-30 Score=268.41 Aligned_cols=189 Identities=29% Similarity=0.394 Sum_probs=158.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccc-----------------cccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYG-----------------GEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-----------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
++..++||+|||||||+++|+.....+.. ......+.+|..+.|+++|+|++.....+++.++
T Consensus 10 ~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 89 (222)
T d1zunb3 10 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 89 (222)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccce
Confidence 45788999999999999999754433321 1122223456678999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHHHHHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEI 793 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~~~~~ 793 (1021)
.++|+|||||.+|+++|++++..+|+|||||||.+|+.+||++|+.++..+|++++||++||||+++ ++++++.+.+++
T Consensus 90 ~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l 169 (222)
T d1zunb3 90 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADY 169 (222)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHH
T ss_pred EEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccceehhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 456788888999
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhc
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~ 840 (1021)
..+++.+++...+++|+|+||++|.|..+.. ..+|+..++|+++|+.
T Consensus 170 ~~~~~~~~~~~~~i~~IPiSA~~G~ni~~~s~~~~wy~g~tl~e~ld~ 217 (222)
T d1zunb3 170 LKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILET 217 (222)
T ss_dssp HHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHH
T ss_pred hhhhHhhccCCCceEEEEEEcccCccCCcCcccCCCCcCChHHHHHhc
Confidence 9999999999888999999999997765443 5678888999999876
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.9e-30 Score=271.75 Aligned_cols=135 Identities=32% Similarity=0.417 Sum_probs=122.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcc-------------cccccCCcccccChHHHhhhCceeeeeeeEEEeecccC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHK-------------IGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKF 75 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~-------------~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~ 75 (1021)
-||+++||+|||||||+++|++.+|.+.. .+...++.+.+|++++|++||+||..+..++.|.
T Consensus 7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~---- 82 (239)
T d1f60a3 7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP---- 82 (239)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS----
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC----
Confidence 49999999999999999999999998753 2334455788999999999999999999999999
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCCE-EEEEeCcCCCCCCHH
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVPK-MIFVNKMDRIGANYN 147 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p~-iiviNK~D~~~~~~~ 147 (1021)
++++||||||||.||..++.++++.+|+|||||||.+| +++||+++|..+...++|. |+|+||||+.+++..
T Consensus 83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~ 162 (239)
T d1f60a3 83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES 162 (239)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHH
Confidence 99999999999999999999999999999999999988 5689999999999999985 568999999887743
|
| >d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.95 E-value=2.4e-28 Score=220.17 Aligned_cols=115 Identities=46% Similarity=0.823 Sum_probs=112.0
Q ss_pred EEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccc
Q psy5021 470 SYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYP 549 (1021)
Q Consensus 470 ~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~p 549 (1021)
+|||||+++++++++|+||+||++|||+|++++||.. ++.|.+++.++.+|++|++||++|+++++..|||+|+|
T Consensus 1 ~YRETI~~~~~~~~~~~rq~GG~gq~a~V~l~vEP~~-----~~~f~~~i~~~~iP~~~i~ave~gv~~a~~~G~l~GyP 75 (115)
T d2dy1a3 1 PYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS-----EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFP 75 (115)
T ss_dssp CCEEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS-----SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCC
T ss_pred CCccccCcceEEEEEEEeecCCCCcEEEEEEEecccc-----ceeEEEEecccccchhHHHHHHHHHHHHhhcccccCCc
Confidence 6999999999999999999999999999999999964 58999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCc
Q psy5021 550 VIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANS 589 (1021)
Q Consensus 550 v~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~ 589 (1021)
|+||+|+|.|+++|++||++++|++||.+|||+|+.+|+|
T Consensus 76 v~dvkv~L~dg~~h~~dSse~AF~~Aa~~A~reA~~~A~P 115 (115)
T d2dy1a3 76 VMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHP 115 (115)
T ss_dssp BCSEEEEEEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCE
T ss_pred eeeeEEEEEEeecccCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999987
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.94 E-value=5.2e-28 Score=252.41 Aligned_cols=196 Identities=33% Similarity=0.475 Sum_probs=153.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc---------------cccccccccCCchhhhhcCceEeeeEEEEeeCCeE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG---------------GEVRAFDTIDNAPEEKERGITISTSHVEYESENKH 715 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~---------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~ 715 (1021)
.+++|++||++||||||+++|+.....+.. ......+.+|..+.|+++|+|++.....++++++.
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~ 82 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 82 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence 357899999999999999999754332221 11122345788999999999999999999999999
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-------cHHHHHHHHHHHHcCCCeEEEEEeeccccc---hhhH
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-------MPQTREHILLARQVGVPNIVVFLNKADCVQ---DKEL 785 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-------~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~~ 785 (1021)
++|+|||||.+|.++|.++++.+|+|||||||.+|. ..||+||+.+++.+|++++||++||||+.. ++.+
T Consensus 83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~~ 162 (224)
T d1jnya3 83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKR 162 (224)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHH
T ss_pred eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHHH
Confidence 999999999999999999999999999999999985 578999999999999998999999999974 4566
Q ss_pred HHHHHHHHHHhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccCCCCCC
Q psy5021 786 LDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSIPTPNR 847 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l~~~~~ 847 (1021)
++.+..++..++..+++...+++++|+||..|.|.... ....|+..+.|+++|+. ++.|+|
T Consensus 163 ~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~~s~~~~wy~~~~L~~~Ld~-i~~P~~ 224 (224)
T d1jnya3 163 YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPK 224 (224)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCC
T ss_pred HHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcccccccCCCcccccHHHHHhc-CCCcCC
Confidence 88888899999999999888899999999988665433 24678877888888866 665643
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.94 E-value=1e-28 Score=258.66 Aligned_cols=135 Identities=29% Similarity=0.342 Sum_probs=107.1
Q ss_pred CeEE--EEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeee-eeeEEEeecccCceeEEEEc
Q psy5021 7 YFRN--IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITS-ASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 7 ~irn--i~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~-~~~~~~~~~~~~~~~i~liD 83 (1021)
++|| |||+||+|||||||+++|++.++.+...|.+.......+. +.|..+++|... ....+.|. +++++|+|
T Consensus 2 ~~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~iD 76 (227)
T d1g7sa4 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEI-PMDVIEGICGDFLKKFSIRET----LPGLFFID 76 (227)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEE-EHHHHHHHSCGGGGGCGGGGT----CCEEEEEC
T ss_pred CCCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeecccccc-ccccccccccccccceeeccc----cccccccc
Confidence 4899 9999999999999999999988887776665543333332 334444444322 22233444 78999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCH
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANY 146 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~ 146 (1021)
||||.+|..++.+++..+|++|+||||.+|++.+++++|+++...++|+|+|+||+|+...+.
T Consensus 77 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~ 139 (227)
T d1g7sa4 77 TPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWR 139 (227)
T ss_dssp CCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCC
T ss_pred ccceecccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchh
Confidence 999999999999999999999999999999999999999999999999999999999986653
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.94 E-value=2.2e-27 Score=247.62 Aligned_cols=134 Identities=29% Similarity=0.408 Sum_probs=106.3
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc-------------cCCcccccChHHHhhhCceeeeeeeEEEeeccc
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV-------------HHGTTITDWMQQEQERGITITSASVSIFWEVNK 74 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~-------------~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~ 74 (1021)
.-|||++||+|||||||+++|++.+|.+...+.. ....+.+|+.++|++||+|+.....++.|+
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~--- 79 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK--- 79 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS---
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecC---
Confidence 3599999999999999999999999887653211 112457899999999999999999999999
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-------chhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-------QPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN 145 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-------~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~ 145 (1021)
++.+||||||||.||..++.++++.+|+||+||||.+|+ +.||++++..+...+++ +|+++||||+...+
T Consensus 80 -~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~ 157 (224)
T d1jnya3 80 -KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 157 (224)
T ss_dssp -SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred -CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCcc
Confidence 999999999999999999999999999999999999995 67888999999888886 67779999997544
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.94 E-value=2e-26 Score=238.07 Aligned_cols=137 Identities=28% Similarity=0.298 Sum_probs=112.1
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc------------ccc---cCCcccccChHHHhhhCceeeeeeeEEE
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI------------GEV---HHGTTITDWMQQEQERGITITSASVSIF 69 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~------------g~~---~~~~~~~d~~~~e~~rgiTi~~~~~~~~ 69 (1021)
-+.+.||+++||+|||||||+++|++..|.+.+. |.. .+....+|..+.|++||+|+..+...+.
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 3457789999999999999999999998876431 110 1123355667899999999999999999
Q ss_pred eecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCCCCCC
Q psy5021 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDRIGAN 145 (1021)
Q Consensus 70 ~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~~~~~ 145 (1021)
+. ++.++|||||||.+|..++.+++..+|+||+||||.+|+++||.++|..+...++|. |+++||||+...+
T Consensus 86 ~~----~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~ 158 (222)
T d1zunb3 86 TA----KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 158 (222)
T ss_dssp CS----SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred cc----ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEcccccccc
Confidence 88 899999999999999999999999999999999999999999999999999999884 6679999997654
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.93 E-value=6.6e-27 Score=246.02 Aligned_cols=190 Identities=32% Similarity=0.417 Sum_probs=128.1
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeCCeE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH 715 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~ 715 (1021)
.++++++||++||||||+++|+...+.+. .......+.+|....|+++|+|++.....++++++.
T Consensus 24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~ 103 (245)
T d1r5ba3 24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 103 (245)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccce
Confidence 35789999999999999999964332221 122223456799999999999999999999999999
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc---hhhH
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQ---DKEL 785 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~~ 785 (1021)
++|+|||||.+|.+++++++..+|+|++||||.+|.+ .||++|+.++..+|++++|+++||||++. .+.+
T Consensus 104 i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~~ 183 (245)
T d1r5ba3 104 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEER 183 (245)
T ss_dssp EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHH
T ss_pred eeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccchhHHH
Confidence 9999999999999999999999999999999999874 49999999999999999999999999863 4567
Q ss_pred HHHHHHHHHHhhhccc-cC-CCceEEEEecccccccCCCC---CccCcchHHHHHHhhhc
Q psy5021 786 LDLVEMEIRELLTEYD-FD-GENTKIVIGSALLALEGKDD---NQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~~-~~-~~~~~ii~iSa~~~~~~~~~---~~~~~~~i~~Ll~~l~~ 840 (1021)
++++.+++..+++.++ +. ...++|+|+||++|.+..+. ....||..++|+++|+.
T Consensus 184 ~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s~~~~wy~G~tl~~~ld~ 243 (245)
T d1r5ba3 184 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDS 243 (245)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhccCCCCCCCchHHHHHhc
Confidence 8888888888887763 32 23579999999999766543 24678989999999875
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.93 E-value=1.5e-26 Score=233.09 Aligned_cols=124 Identities=30% Similarity=0.497 Sum_probs=96.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+++ ||||+||+|||||||+|+|+.... ....|+.+.|+.||+|+......+.+. ++.++++|||
T Consensus 4 k~i-nIaiiG~~naGKSTL~n~L~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~d~~ 67 (179)
T d1wb1a4 4 KNI-NLGIFGHIDHGKTTLSKVLTEIAS-----------TSAHDKLPESQKRGITIDIGFSAFKLE----NYRITLVDAP 67 (179)
T ss_dssp EEE-EEEEEECTTSSHHHHHHHHHTTC-------------------------------CCCEEEET----TEEEEECCCS
T ss_pred CCE-EEEEEeCCCCcHHHHHHHHHHhcC-----------ceecccccceeeeeeeccccccccccC----Cccccccccc
Confidence 444 999999999999999999974222 344577788999999999999999998 8999999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGAN 145 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~ 145 (1021)
||.+|..++.+++..+|++++|+|+.+|+..|++++|..+...++|+++|+||+|+...+
T Consensus 68 g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~ 127 (179)
T d1wb1a4 68 GHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE 127 (179)
T ss_dssp SHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHH
T ss_pred cccccccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHH
Confidence 999999999999999999999999999999999999999999999999999999997543
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.93 E-value=1e-26 Score=244.58 Aligned_cols=136 Identities=26% Similarity=0.303 Sum_probs=89.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc-------------cCCcccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV-------------HHGTTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~-------------~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
+...||+|+||+|||||||+++|++.+|.+...+.. ......+|+.+.|++||+|++.+...+.|.
T Consensus 22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~- 100 (245)
T d1r5ba3 22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 100 (245)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc-
Confidence 446799999999999999999999999987542100 112467889999999999999999999999
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-------chhHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-------QPQTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-------~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
++.++++|||||.+|..++.+++..+|+||+||||.+|+ +.||++++..+...++| +++++||||++.+
T Consensus 101 ---~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~ 177 (245)
T d1r5ba3 101 ---HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV 177 (245)
T ss_dssp ---SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred ---cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCcc
Confidence 999999999999999999999999999999999999996 45999999999999998 5578999999876
Q ss_pred C
Q psy5021 145 N 145 (1021)
Q Consensus 145 ~ 145 (1021)
+
T Consensus 178 ~ 178 (245)
T d1r5ba3 178 Q 178 (245)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.92 E-value=5.1e-25 Score=226.71 Aligned_cols=138 Identities=26% Similarity=0.286 Sum_probs=89.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc-----cccccCCccc---ccChHHHhhhCceeeeeeeEEEe-ecccCc
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHK-----IGEVHHGTTI---TDWMQQEQERGITITSASVSIFW-EVNKFK 76 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~-----~g~~~~~~~~---~d~~~~e~~rgiTi~~~~~~~~~-~~~~~~ 76 (1021)
...-||||+||+|||||||+++|++..+.... ....+.+... ......+.+++.+.......... ......
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 34459999999999999999999853332111 0000111000 00111111111111111000000 001124
Q ss_pred eeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhhcCC-CEEEEEeCcCCCC
Q psy5021 77 YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQKYKV-PKMIFVNKMDRIG 143 (1021)
Q Consensus 77 ~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~~~~-p~iiviNK~D~~~ 143 (1021)
+.+++||||||.||..++.+++..+|++|+||||.+|+ +.||+++|..+...++ |+|+++||||+..
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~ 154 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS 154 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSC
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCcc
Confidence 68999999999999999999999999999999999997 8899999999999997 6777899999964
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.92 E-value=4.5e-25 Score=225.36 Aligned_cols=121 Identities=31% Similarity=0.389 Sum_probs=99.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc--------------
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN-------------- 73 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~-------------- 73 (1021)
.-||||+||+|||||||+++|++. ..|....|.++|+|++.......+...
T Consensus 5 ~inIaiiGhvd~GKSTL~~~L~g~---------------~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (195)
T d1kk1a3 5 EVNIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPY 69 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC---------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTT
T ss_pred cEEEEEEeccCCcHHHHHHHHHhh---------------hhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeee
Confidence 459999999999999999999632 224455677888888877666655431
Q ss_pred -----cCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhhcCCC-EEEEEeCcCCCC
Q psy5021 74 -----KFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQKYKVP-KMIFVNKMDRIG 143 (1021)
Q Consensus 74 -----~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~~~~p-~iiviNK~D~~~ 143 (1021)
...++++++|||||.+|..++.++++.+|++++|||+.+|. ..+|++++..+...++| +++++||+|+..
T Consensus 70 ~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d 146 (195)
T d1kk1a3 70 CGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 146 (195)
T ss_dssp TCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred eeeeecCceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchh
Confidence 12367999999999999999999999999999999999996 67799999999998888 566799999864
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.92 E-value=5.4e-25 Score=226.48 Aligned_cols=180 Identities=32% Similarity=0.429 Sum_probs=127.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccc------------cccCCchhhhhcCceEeee----EEEEeeCCe
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAF------------DTIDNAPEEKERGITISTS----HVEYESENK 714 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~------------~~~d~~~~e~~~G~Ti~~~----~~~~~~~~~ 714 (1021)
.+.+|++||+|||||||+++|++............. ........++ ...+.... ...+....+
T Consensus 8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r 86 (205)
T d2qn6a3 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPE-AYVTEPSCKSCGSDDEPKFLR 86 (205)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTT-TEESSSCCGGGTCCSCCEEEE
T ss_pred CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhh-eeeecccceeeeeeccccceE
Confidence 468999999999999999999874322211111100 0000111000 00000000 000112236
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEI 793 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~ 793 (1021)
.++++|||||.+|.++|+.++..+|++|+||||.+|. ..||++|+.++..+|++++||++||||+++++. ......++
T Consensus 87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~-~~~~~~~~ 165 (205)
T d2qn6a3 87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEE-ALSQYRQI 165 (205)
T ss_dssp EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHH-HHHHHHHH
T ss_pred EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchH-HHHHHHHH
Confidence 7999999999999999999999999999999999996 889999999999999987999999999997433 34445566
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
.++++...+ .+++++|+||++|. |+++|++.|..++|.|
T Consensus 166 ~~~l~~~~~--~~~p~ipiSA~~g~-----------nI~~L~e~i~~~ip~P 204 (205)
T d2qn6a3 166 KQFTKGTWA--ENVPIIPVSALHKI-----------NIDSLIEGIEEYIKTP 204 (205)
T ss_dssp HHHHTTSTT--TTCCEEECBTTTTB-----------SHHHHHHHHHHHSCCC
T ss_pred HHHhccccC--CCCeEEEEeCCCCC-----------ChHHHHHHHHhhCCCC
Confidence 677665543 46899999999884 8999999999998865
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.91 E-value=1.1e-24 Score=222.40 Aligned_cols=166 Identities=39% Similarity=0.524 Sum_probs=134.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe--------------------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE-------------------- 710 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~-------------------- 710 (1021)
.+.+|++||+|||||||+|+|++.. .++...|.++|+|.+..+..+.
T Consensus 5 ~inIaiiGhvd~GKSTL~~~L~g~~-------------~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T d1kk1a3 5 EVNIGMVGHVDHGKTTLTKALTGVW-------------TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCG 71 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC-------------CC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTC
T ss_pred cEEEEEEeccCCcHHHHHHHHHhhh-------------hhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeee
Confidence 3578999999999999999998742 3666777888888776554332
Q ss_pred ---eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHH
Q psy5021 711 ---SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFLNKADCVQDKELL 786 (1021)
Q Consensus 711 ---~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~ 786 (1021)
..+..++|+|||||.+|.+++.++++.+|++++|||+.+|. ..|+++|+.++..+++|++||++||||+.+.. ..
T Consensus 72 ~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~-~~ 150 (195)
T d1kk1a3 72 HETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE-KA 150 (195)
T ss_dssp CBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH-HH
T ss_pred eeecCceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhH-HH
Confidence 12356899999999999999999999999999999999996 57899999999999999899999999998743 23
Q ss_pred HHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 787 DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.....++.++++..++ +.++++|+||++| +|+++|++++.+++|
T Consensus 151 ~~~~~~~~~~~~~~~~--~~~~iIpiSA~~G-----------~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 151 LENYRQIKEFIEGTVA--ENAPIIPISALHG-----------ANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHHHHHHHHHHTTSTT--TTCCEEECBTTTT-----------BSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhccccC--CCCeEEEEECCCC-----------CCHHHHHHHHHHHCc
Confidence 3444567777766554 4688999999988 489999999998776
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.90 E-value=3.3e-24 Score=215.69 Aligned_cols=175 Identities=33% Similarity=0.551 Sum_probs=129.8
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
++|.+.++++|++|||||||+|+|++.... ...++.+.++.+|+|.+.....+...+..++++|+|||.+|
T Consensus 2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 72 (179)
T d1wb1a4 2 DFKNINLGIFGHIDHGKTTLSKVLTEIAST---------SAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL 72 (179)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHHHH
T ss_pred CCCCEEEEEEeCCCCcHHHHHHHHHHhcCc---------eecccccceeeeeeeccccccccccCCcccccccccccccc
Confidence 577889999999999999999999974321 12467788999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
.+++..++..+|++++|+|+.+|...|+++++..+...++| +++|+||||+++.+ ..+.....++.+++.. +.....
T Consensus 73 ~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p-~iiv~NKiD~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 149 (179)
T d1wb1a4 73 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP-IIVVITKSDNAGTE-EIKRTEMIMKSILQST-HNLKNS 149 (179)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCC-BCEEEECTTSSCHH-HHHHHHHHHHHHHHHS-SSGGGC
T ss_pred ccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCc-ceeccccccccCHH-HHHHHHHHHHHHHHHh-hcCCCC
Confidence 99999999999999999999999999999999999999999 88899999998732 2333333334444332 222357
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
+++|+||++| +|+++|+++|.+.+|.+
T Consensus 150 ~iv~iSA~~g-----------~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 150 SIIPISAKTG-----------FGVDELKNLIITTLNNA 176 (179)
T ss_dssp CEEECCTTTC-----------TTHHHHHHHHHHHHHHS
T ss_pred eEEEEEccCC-----------cCHHHHHHHHHhcCCcc
Confidence 8999999988 48999999998776543
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.88 E-value=2.7e-22 Score=211.48 Aligned_cols=127 Identities=27% Similarity=0.306 Sum_probs=113.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccc--cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYG--GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
+++++||.+||||||+.+|+.....+.. ......+++|..++|++||+|++.+...+++++++++|+|||||.+|..+
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 5789999999999999999755443321 22234567899999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
+..+++.+|.||+||||.+|++.||+++|.++...++| .++++||||..
T Consensus 84 ~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p-~~i~iNk~D~~ 132 (267)
T d2dy1a2 84 IRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP-RMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECGGGC
T ss_pred hhhhhcccCceEEEeeccCCccchhHHHHHhhhhcccc-ccccccccccc
Confidence 99999999999999999999999999999999999999 77789999975
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=1e-22 Score=214.83 Aligned_cols=128 Identities=30% Similarity=0.404 Sum_probs=103.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccc--cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYG--GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
+++++||.++|||||+.+|+.....+.. ......+++|..++|++||+|++.....++++++.++|+|||||.+|..+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e 87 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIE 87 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHH
Confidence 7899999999999999999865544442 22234557899999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
+..+++.+|.||+||||.+|+..||+..|..+...++| .|+++||||...
T Consensus 88 ~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP-~i~fINKmDr~~ 137 (276)
T d2bv3a2 88 VERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTG 137 (276)
T ss_dssp HHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCC-EEEEEECTTSTT
T ss_pred HHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCC-EEEEEecccccc
Confidence 99999999999999999999999999999999999999 778999999864
|
| >d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.86 E-value=1.6e-22 Score=169.60 Aligned_cols=77 Identities=35% Similarity=0.593 Sum_probs=74.7
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeE
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQV 469 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V 469 (1021)
+|+|+++++|+|.+++|.+||.+||++|++|||||++.+|++|||++|+||||+||||+++||+ +||+++.+++|+|
T Consensus 1 iP~Pv~~~ai~p~~~~d~~kl~~aL~~L~~eDPsl~v~~d~et~e~vl~g~GelHLei~~~rL~-~~~v~v~~~~P~V 77 (77)
T d2dy1a4 1 LPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKV 77 (77)
T ss_dssp CCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHHHHHHhhcCeEEEEEcCCchhheEeccccchHHHHHHHHH-HcCCcEEeeCCcC
Confidence 4899999999999999999999999999999999999999999999999999999999999996 7999999999986
|
| >d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=2.3e-21 Score=162.89 Aligned_cols=75 Identities=36% Similarity=0.590 Sum_probs=71.8
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc-CeeeEEeCCe
Q psy5021 393 PIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQ 468 (1021)
Q Consensus 393 ~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~-~v~v~~~~p~ 468 (1021)
.+|+++++|+|.+++|++||.+||++|++||||+++. ++||||++|+||||||||++++||+++| |+++++|+|.
T Consensus 4 ~~Pv~~~aiep~~~~d~~kL~~aL~kl~~eDpsl~v~-~~etge~il~G~GelHLev~~~rL~~~f~~vev~~~~Pi 79 (79)
T d1n0ua4 4 VSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTY-MSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPV 79 (79)
T ss_dssp CSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEE-ECTTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCC
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEE-EcCCCCcEEecCCHHHHHHHHHHHHHHhCCceEEeCCCC
Confidence 4799999999999999999999999999999999996 5689999999999999999999999999 9999999994
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.83 E-value=6.2e-22 Score=206.60 Aligned_cols=132 Identities=28% Similarity=0.338 Sum_probs=98.6
Q ss_pred cccceeeeeeeeeccchhhhhhhcccccccccccc-ccccccCCchhhhhcCceEee-eEEEEeeCCeEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEV-RAFDTIDNAPEEKERGITIST-SHVEYESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~d~~~~e~~~G~Ti~~-~~~~~~~~~~~i~liDtpG~~~ 726 (1021)
+|+-.++++||+|||||||+|+|++....+..... ...........++..+.|... ....+++++..++|+|||||.+
T Consensus 3 ~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~ 82 (227)
T d1g7sa4 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (227)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceec
Confidence 45556899999999999999999975433322111 000001112233333333221 1223566778999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
|...+..++..+|++|+||||.+|...|+++++.++...++| +|+|+||||+++
T Consensus 83 f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iivlNK~D~~~ 136 (227)
T d1g7sa4 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRIH 136 (227)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGST
T ss_pred ccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCe-EEEEEECccCCC
Confidence 999999999999999999999999999999999999999999 899999999874
|
| >d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=2.3e-22 Score=166.79 Aligned_cols=75 Identities=48% Similarity=0.768 Sum_probs=41.9
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeC
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISK 466 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~ 466 (1021)
+|+|+++++|+|.+++|.+||.+||++|++|||||++.+|++|||++|+||||+||||+++||+++||+++.+|+
T Consensus 1 vP~Pv~~~ai~p~~~~D~~kl~~aL~~L~~EDPsl~~~~d~et~e~il~g~GelHLev~~~rL~~~~~vev~~gk 75 (75)
T d2bv3a4 1 VPEPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKREFKVDANVGK 75 (75)
T ss_dssp CCCCCEECBCCC-------------------CCSCEEEECSSSSCEEEEBSSHHHHTTCC------------CCC
T ss_pred CCCCcEEEEEEECCHhHHHHHHHHHHHHHhhCCceEEEEcCcCCcEEEeeCCHhHHHHHHHHHHHHHCCceEeCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999998874
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=9.4e-21 Score=164.15 Aligned_cols=91 Identities=77% Similarity=1.188 Sum_probs=87.4
Q ss_pred CCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccC
Q psy5021 849 TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREE 928 (1021)
Q Consensus 849 ~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~ 928 (1021)
.|+||||+|+++|+++|.|+|++|+|++|+|++||++.+.|.+...+++|+||++|+.+++.|.|||+|+|+|++++.++
T Consensus 2 vd~P~rlpId~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~~~~~~~~vksi~~~~~~~~~a~aG~~v~l~L~gi~~~~ 81 (92)
T d1efca1 2 IDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREE 81 (92)
T ss_dssp GGSCCEEECCEEEECTTSCEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEEETTEEESEEETTCEEEEEETTCCGGG
T ss_pred CCCCEEEEEEEEEEcCCeEEEEEEEeccCeEcCCCEEEEEcCCCCcEEEEEEEEECCcCccccCCCCEEEEEEcCCCHHH
Confidence 37899999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred cccceEEeeCC
Q psy5021 929 VERGQVLAKIG 939 (1021)
Q Consensus 929 i~~G~vl~~~~ 939 (1021)
++||+|||+++
T Consensus 82 i~rG~vl~~pG 92 (92)
T d1efca1 82 IERGQVLAKPG 92 (92)
T ss_dssp CCTTCEEECTT
T ss_pred cCCccEEeCCC
Confidence 99999999874
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.82 E-value=1.6e-20 Score=165.42 Aligned_cols=95 Identities=58% Similarity=0.988 Sum_probs=90.4
Q ss_pred CCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCc
Q psy5021 847 RITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKR 926 (1021)
Q Consensus 847 ~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~ 926 (1021)
|..++||||+|+++|+++|.|+|++|+|++|.|++||++.+.|.+....++|++|++|++++++|.|||+|+|+|++++.
T Consensus 2 R~~d~Pfr~pId~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~~~~~~~~V~si~~~~~~~~~a~aG~~v~l~l~gi~~ 81 (98)
T d1d2ea1 2 RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKR 81 (98)
T ss_dssp CCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCG
T ss_pred CCCCCCEEEEEEEEEEeCCcEEEEecceeeeeEeCCCEEEEccCCCCeeEEEEEEEEeccEeccCCCCCEEEEEEcCCCH
Confidence 66799999999999999999999999999999999999999888877788999999999999999999999999999999
Q ss_pred cCcccceEEeeCCCc
Q psy5021 927 EEVERGQVLAKIGSI 941 (1021)
Q Consensus 927 ~~i~~G~vl~~~~~~ 941 (1021)
+++++|+|||+++.+
T Consensus 82 ~~i~rG~vl~~p~~~ 96 (98)
T d1d2ea1 82 EDLRRGLVMAKPGSI 96 (98)
T ss_dssp GGCCTTCEEESTTSC
T ss_pred HHccCccEEeCCCCC
Confidence 999999999998754
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=6.5e-21 Score=207.43 Aligned_cols=127 Identities=31% Similarity=0.436 Sum_probs=98.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee----------------CCeEE
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES----------------ENKHY 716 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~----------------~~~~i 716 (1021)
+++++||.+||||||+++|+...+.+.........++|..++|++||+|+..+...+.+ +++.+
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 98 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 98 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence 48999999999999999998766555543333345689999999999999988887743 34679
Q ss_pred EEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 717 AHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 717 ~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
+|+|||||.+|..++..+++.+|+||+||||.+|+..||+++|.++...++| +|+++||||..
T Consensus 99 nliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p-~i~viNKiDr~ 161 (341)
T d1n0ua2 99 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINKVDRA 161 (341)
T ss_dssp EEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEECHHHH
T ss_pred EEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCC-eEEEEECcccc
Confidence 9999999999999999999999999999999999999999999999999999 78899999975
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=2.2e-20 Score=162.76 Aligned_cols=89 Identities=34% Similarity=0.692 Sum_probs=84.9
Q ss_pred CCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCc
Q psy5021 850 DKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEV 929 (1021)
Q Consensus 850 ~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i 929 (1021)
|+||||+|+++|+++|.|+|++|+|++|+|++||++.+.|++ .+++|+||++|++++++|.|||+|+++|++++.+++
T Consensus 1 dkP~rmpI~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~l~l~~i~~~~i 78 (94)
T d1f60a1 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG--VTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEI 78 (94)
T ss_dssp TSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT--EEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTS
T ss_pred CCCEEEEEEEEEEeCCeeEEEEEeeecccCCCCCEEEECcCC--ceEEEEEEEEcCcCcCEecCCCeEEEEEeCccHHhc
Confidence 689999999999999999999999999999999999999865 468999999999999999999999999999999999
Q ss_pred ccceEEeeCCC
Q psy5021 930 ERGQVLAKIGS 940 (1021)
Q Consensus 930 ~~G~vl~~~~~ 940 (1021)
+||+|||++++
T Consensus 79 ~rG~vl~~~~~ 89 (94)
T d1f60a1 79 RRGNVCGDAKN 89 (94)
T ss_dssp CTTCEEEETTS
T ss_pred CCCCEEECCCC
Confidence 99999998875
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=5.3e-20 Score=168.75 Aligned_cols=97 Identities=44% Similarity=0.781 Sum_probs=91.2
Q ss_pred CCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccc
Q psy5021 294 NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESS 373 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~ 373 (1021)
+++||+|+|||+.+|++.|+++|+|||||+|++||.|++.+.++++++.+++.++|.++.++++|.||||+++.|++++.
T Consensus 23 ~~~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~ 102 (121)
T d2bv3a1 23 PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETI 102 (121)
T ss_dssp TTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECEEEEECSSCEEEESEEETTCEEEEESCSSCC
T ss_pred CCCCEEEEEEeeeecCCCCeEEeeeecccccCCCCEEEEccCCCEEEEeeeeeeecccccEeeEeccccceEEeccCCce
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeccCCcc-ccccCC
Q psy5021 374 TGDTLCSLSEN-IQLENI 390 (1021)
Q Consensus 374 ~gdtl~~~~~~-~~~~~~ 390 (1021)
+|||||+.+.+ +.++++
T Consensus 103 ~GDTl~~~~~p~~~le~i 120 (121)
T d2bv3a1 103 TGDTLVGEDAPRVILESI 120 (121)
T ss_dssp TTCEEEETTSCCCBCSCC
T ss_pred eCCEEecCCCCceECCCC
Confidence 99999998765 445544
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=5.9e-20 Score=162.55 Aligned_cols=97 Identities=71% Similarity=1.104 Sum_probs=90.6
Q ss_pred CCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec-CCeeEEEEEEEEecccccceeccCceEEEEecc
Q psy5021 845 PNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY-KQTIKTTITGIEMFKKTLDEGLAGENVGILLRS 923 (1021)
Q Consensus 845 ~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~-~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~ 923 (1021)
|+|..++||||+|+++|+++|.|+|++|+|++|.+++||++.++|. +....++|+||+.++.++++|.|||+|+|+|++
T Consensus 1 P~R~~~~p~r~~Id~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~~p~~~~~~V~sI~~~~~~~~~a~aG~~v~l~l~g 80 (100)
T d2c78a1 1 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRG 80 (100)
T ss_dssp CCCCCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESS
T ss_pred CcCCCCCCEEEEEEEEEEcCCcEEEEEEEEeccEEECCCEeEEEeecCCCcEEEEEEEEECCccccEEeCCCeEEEEEcC
Confidence 5688899999999999999999999999999999999999999864 355678999999999999999999999999999
Q ss_pred cCccCcccceEEeeCCCc
Q psy5021 924 VKREEVERGQVLAKIGSI 941 (1021)
Q Consensus 924 ~~~~~i~~G~vl~~~~~~ 941 (1021)
++.+++++|+|||+++.+
T Consensus 81 i~~~~i~rG~vl~~p~~l 98 (100)
T d2c78a1 81 VSREEVERGQVLAKPGSI 98 (100)
T ss_dssp CCTTTCCTTCEEESTTSS
T ss_pred CCHHHccCcCEEECCCCC
Confidence 999999999999998764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=8.3e-19 Score=175.70 Aligned_cols=115 Identities=21% Similarity=0.171 Sum_probs=86.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
--.|+++|++|||||||+++|+.....+.. ...+.|.........+. +..++++||||+
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~-----------------~~~~tt~~~~~~~~~~~----~~~~~~~DtpG~ 63 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPIS-----------------PRPQTTRKRLRGILTEG----RRQIVFVDTPGL 63 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCC-----------------SSSCCCCSCEEEEEEET----TEEEEEEECCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeec-----------------ccCCcccccccceeeee----eeeeeecccccc
Confidence 457999999999999999999754322211 12234444444445555 789999999998
Q ss_pred CCc--------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh--cCCCEEEEEeCcCCCC
Q psy5021 88 VDF--------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f--------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
.+. ...+.++++.+|++|+|+|++++...+.+.+++.++. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~ 129 (178)
T d1wf3a1 64 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 129 (178)
T ss_dssp CCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred cccccccchhcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhccccccc
Confidence 544 3445677889999999999999998888777777654 3689999999999853
|
| >d1n0ua3 d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), domain IV {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor 2 (eEF-2), domain IV species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=1.3e-19 Score=176.67 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=101.4
Q ss_pred EEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCC----------------------------------------
Q psy5021 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLE---------------------------------------- 508 (1021)
Q Consensus 469 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~---------------------------------------- 508 (1021)
|+|||||.+.+....- .+.... ..++.+.++|++++
T Consensus 1 V~frETI~~~S~~~~~-~ks~Nk---hn~i~~~aePL~~~i~~~ie~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 76 (165)
T d1n0ua3 1 VAYRETVESESSQTAL-SKSPNK---HNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCF 76 (165)
T ss_dssp CCCEEEESSCCSSCEE-EECTTS---SCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEE
T ss_pred CCeeeeeccCCCceee-ccCCCc---ceEEEEEEEeCCHhHhHHhhcCCcCcccchHHHHHHHHHhhccccccccceeec
Confidence 7899999976543211 222211 25678999999751
Q ss_pred ---CCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCCCHHHHHH--HHHHHHHHH
Q psy5021 509 ---NKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKN--AAAIALKDA 583 (1021)
Q Consensus 509 ---~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~--a~~~a~~~a 583 (1021)
+..+|.|.|.+.++.++++|+++|++||+||+++||||||||+||+|+|.|+++|+++++.++||. |+|+||++|
T Consensus 77 gp~~~~~ni~vd~t~g~~~~~~~~~si~~Gf~~a~~~GpL~~epv~gv~~~l~d~~~h~~~~~~~~~qiipa~r~a~~~a 156 (165)
T d1n0ua3 77 GPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAG 156 (165)
T ss_dssp SSTTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHH
T ss_pred ccCCCCceEEEeCcccccchHHHHHHHHHHHHHHHhhCccCCCcEEeEEEEEEEccccccccCCCcchhHHHHHHHHHHH
Confidence 124689999999999999999999999999999999999999999999999999999999989987 999999999
Q ss_pred HHhcCccee
Q psy5021 584 LKKANSYIL 592 (1021)
Q Consensus 584 ~~~a~~~ll 592 (1021)
|++|+|+|.
T Consensus 157 ~l~a~P~l~ 165 (165)
T d1n0ua3 157 FLLADPKIQ 165 (165)
T ss_dssp HHHSCEEEE
T ss_pred HhhCCCCCC
Confidence 999999984
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.78 E-value=2.4e-19 Score=157.33 Aligned_cols=91 Identities=34% Similarity=0.649 Sum_probs=86.2
Q ss_pred CCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccC
Q psy5021 849 TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREE 928 (1021)
Q Consensus 849 ~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~ 928 (1021)
.|+||||+|+++|+++|.|+|++|+|++|.+++||++.++|++ ..++|+||++++.++++|.|||+|+++|++++.++
T Consensus 2 ~d~Plr~pI~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~l~l~~i~~~~ 79 (95)
T d1jnya1 2 VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAG--KVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKD 79 (95)
T ss_dssp GGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTT--EEEEEEEEEETTEEESEECTTCEEEEEEESSCGGG
T ss_pred CCcCEEEEEEEEEEcCCceeEEEEEEeeccccCCCEEEEEeCC--ceEEEEEEEecCCccCEEeCCCcEEEEEEcCcHHh
Confidence 4789999999999999999999999999999999999999865 45899999999999999999999999999999999
Q ss_pred cccceEEeeCCCc
Q psy5021 929 VERGQVLAKIGSI 941 (1021)
Q Consensus 929 i~~G~vl~~~~~~ 941 (1021)
++||+|||+++++
T Consensus 80 i~rG~vl~~~~~~ 92 (95)
T d1jnya1 80 IKRGDVVGHPNNP 92 (95)
T ss_dssp CCTTCEEECTTSC
T ss_pred cCCCCEEECCCcc
Confidence 9999999998864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=9.6e-18 Score=167.83 Aligned_cols=158 Identities=20% Similarity=0.176 Sum_probs=116.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh----
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH---- 724 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~---- 724 (1021)
..+.+++++|++|+|||||+|+|++...... ....+.|.......+...+..+.+|||||+
T Consensus 3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~---------------~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~ 67 (178)
T d1wf3a1 3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPI---------------SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67 (178)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCC---------------CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceee---------------cccCCcccccccceeeeeeeeeeecccccccccc
Confidence 3456899999999999999999998542221 123355666666667788899999999996
Q ss_pred ----hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 725 ----ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 725 ----~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
+.+...+..++..||++|+|+|++++...+...++..++.. +.| +|+|+||+|+....+ ...+.+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~p-iilv~NK~Dl~~~~~---~~~~~~~~~-- 141 (178)
T d1wf3a1 68 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAAKYPE---EAMKAYHEL-- 141 (178)
T ss_dssp SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGCSSHH---HHHHHHHHT--
T ss_pred cccchhcccccccccccccceeeeechhhhhcccccchhhheeccccchh-hhhhhcccccccCHH---HHHHHHHhh--
Confidence 33455566778899999999999998887777777766554 456 999999999976321 122223222
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+++ ..++++||++| .|+++|++.|.+.+|
T Consensus 142 -~~~----~~~~~iSA~~~-----------~gi~~L~~~i~~~lp 170 (178)
T d1wf3a1 142 -LPE----AEPRMLSALDE-----------RQVAELKADLLALMP 170 (178)
T ss_dssp -STT----SEEEECCTTCH-----------HHHHHHHHHHHTTCC
T ss_pred -ccc----CceEEEecCCC-----------CCHHHHHHHHHHhCC
Confidence 332 46788999987 489999999999886
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=1.1e-17 Score=168.65 Aligned_cols=115 Identities=21% Similarity=0.198 Sum_probs=88.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+--+|||+||+|||||||+++|+.....+.. + ..+.|.......+.+. ++.+.++||||
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~-----------~------~~~t~~~~~~~~~~~~----~~~~~~~d~~g 65 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVS-----------P------IPGTTRDPVDDEVFID----GRKYVFVDTAG 65 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----------C------CC------CCEEEEET----TEEEEESSCSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceee-----------c------ccccccccceeeeccC----CceeeeeccCC
Confidence 3356999999999999999999753332211 1 1122333333455666 78899999999
Q ss_pred CC------------CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HV------------DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~------------~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+. ++...+..+++.+|++++|+|+..+...+...++.++...+.|+|+++||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~ 133 (186)
T d1mkya2 66 LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV 133 (186)
T ss_dssp C-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred ccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhh
Confidence 73 445678888999999999999999999999999999999999999999999985
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.73 E-value=7.7e-20 Score=158.94 Aligned_cols=91 Identities=37% Similarity=0.681 Sum_probs=86.1
Q ss_pred CCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCc
Q psy5021 847 RITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKR 926 (1021)
Q Consensus 847 ~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~ 926 (1021)
|..+.||||+|+++|+++|.|+|++|+|++|.+++||+|.+.|++. +++|+||++++.+++.|.|||+|+|+|++++.
T Consensus 1 R~~~~~fr~~I~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aGd~v~l~L~gi~~ 78 (92)
T d1wb1a1 1 RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINM--STKVRSIQYFKESVMEAKAGDRVGMAIQGVDA 78 (92)
T ss_dssp CCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCC--CEEECCBCGGGSCBCCCCSSCCCCEECSSCCS
T ss_pred CCCCCCEEEEEEEEEEeCCcEEEEEeEEeeceEecCCeEEEeccCC--ceEEEeeeEcCceeeEeCCCCEEEEEEcCCCH
Confidence 4568999999999999999999999999999999999999999775 48899999999999999999999999999999
Q ss_pred cCcccceEEeeCC
Q psy5021 927 EEVERGQVLAKIG 939 (1021)
Q Consensus 927 ~~i~~G~vl~~~~ 939 (1021)
+++++|+|||+++
T Consensus 79 ~~i~rG~vl~~~~ 91 (92)
T d1wb1a1 79 KQIYRGCILTSKD 91 (92)
T ss_dssp SCCCSSCBCCCTT
T ss_pred HHcCCcCEEeCCC
Confidence 9999999999875
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=1.2e-17 Score=166.06 Aligned_cols=112 Identities=20% Similarity=0.274 Sum_probs=83.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|++|||||||+++|+.....+. +...+.|.......+.+. .+.+.++||||..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~ 60 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIV-----------------EDEEGVTRDPVQDTVEWY----GKTFKLVDTCGVFD 60 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-------------------------------CCSEEEEEET----TEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccee-----------------cccCceeecccccccccc----ccccccccccceee
Confidence 589999999999999999974332211 122345555555556666 78999999999633
Q ss_pred c---------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 90 F---------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f---------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
. ...+..++..+|.+++++|+.++...+.+.++..+...++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~ 122 (171)
T d1mkya1 61 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122 (171)
T ss_dssp SGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred eeccccccccccccccccccCcEEEEeecccccccccccccccccccccccccccchhhhhh
Confidence 2 3445666789999999999999999999999999999999999999999984
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.71 E-value=1.5e-17 Score=148.01 Aligned_cols=89 Identities=19% Similarity=0.357 Sum_probs=83.6
Q ss_pred CCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccc
Q psy5021 294 NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESS 373 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~ 373 (1021)
.++||+++|||+.+|+++|+++|+|||||+|++||.|++.+. .+++.+++.+++.++++++++.||||+++.|+++++
T Consensus 6 ~d~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~--~~~~~~~~~~~~~~~~~v~~~~aGdI~~v~g~~~~~ 83 (103)
T d2dy1a1 6 GDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAG--QVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLH 83 (103)
T ss_dssp CSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTTS--CEEESSEEEEETTEEEEESCEETTCEEEESSCTTCC
T ss_pred CCCCcEEEEEEEEecCCCCEEEEEEEeccccCCCCEEEEeec--ccccceeeeeecCcceecCEecCCCEEEEeCCCCCc
Confidence 689999999999999999999999999999999999987654 578999999999999999999999999999999999
Q ss_pred cCCeeccCCcc
Q psy5021 374 TGDTLCSLSEN 384 (1021)
Q Consensus 374 ~gdtl~~~~~~ 384 (1021)
+|||||+.+.+
T Consensus 84 iGDTl~~~~~p 94 (103)
T d2dy1a1 84 RGMVLWQGEKP 94 (103)
T ss_dssp TTCEEESSSCC
T ss_pred cCCEEcCCCCc
Confidence 99999997655
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.71 E-value=2.3e-17 Score=150.02 Aligned_cols=97 Identities=30% Similarity=0.449 Sum_probs=88.1
Q ss_pred CCCCCCCCeeEEEEEEEeeCCcee--------EEEEEEEEEEeeCCCEEEEeecCC----------eeEEEEEEEEeccc
Q psy5021 845 PNRITDKPFLMPIEDVFSISGRGT--------VVTGKIERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKK 906 (1021)
Q Consensus 845 ~~~~~~~p~~~~I~~~~~v~g~G~--------Vv~G~V~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~ 906 (1021)
|+|..++|+||+|+++|.++|.|+ |++|+|++|+|++||+|.+.|++. +.+++|+||++++.
T Consensus 1 P~R~~~~p~r~~Idr~F~v~g~Gt~~~~~~G~VvtGtv~sG~ik~GD~v~i~P~~~~~~~~~~~~~~~~~~V~sI~~~~~ 80 (121)
T d1kk1a1 1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQ 80 (121)
T ss_dssp CCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTE
T ss_pred CCCCCCCCcEEEEEEEEEecCCCCccccCcceEEEeeecCCEEecCCEEEECCCCccccccceeceeeeeEEEEEEECCC
Confidence 567889999999999999988776 999999999999999999999753 34689999999999
Q ss_pred ccceeccCceEEEEec---ccCccCcccceEEeeCCCc
Q psy5021 907 TLDEGLAGENVGILLR---SVKREEVERGQVLAKIGSI 941 (1021)
Q Consensus 907 ~~~~a~~G~~v~l~l~---~~~~~~i~~G~vl~~~~~~ 941 (1021)
++++|.|||+|+++|+ +++..|+.+|+||++++.+
T Consensus 81 ~v~~A~~G~~Vgv~l~~d~~i~r~Dv~rG~Vl~~pg~l 118 (121)
T d1kk1a1 81 FVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKL 118 (121)
T ss_dssp EESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCS
T ss_pred CcCEEeCCCeEEEEecccCCcchhHhcceeEEECCCCC
Confidence 9999999999999998 8999999999999998854
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=4.4e-17 Score=164.15 Aligned_cols=160 Identities=22% Similarity=0.247 Sum_probs=117.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh---
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY--- 727 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~--- 727 (1021)
++.+|++|++|+|||||+|+|++........ ..+.|.......+..++..+.++|+||+...
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~---------------~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 72 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSP---------------IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRV 72 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------------CC------CCEEEEETTEEEEESSCSCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcceeec---------------ccccccccceeeeccCCceeeeeccCCccccccc
Confidence 4678999999999999999999854322221 1233444445557778899999999997543
Q ss_pred ---------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchh-hHHHHHHHHHHHhh
Q psy5021 728 ---------IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDK-ELLDLVEMEIRELL 797 (1021)
Q Consensus 728 ---------~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~-~~~~~~~~~~~~~l 797 (1021)
...+...+..+|++++|+|+..+...+..+++.++...+.| +|+|+||+|+.... ...+++.+.+.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~-~i~v~nK~D~~~~~~~~~~~~~~~~~~~~ 151 (186)
T d1mkya2 73 EPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA-SVVVFNKWDLVVHREKRYDEFTKLFREKL 151 (186)
T ss_dssp -----CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSTTGGGCHHHHHHHHHHHC
T ss_pred cccccccchhHHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCc-eeeeccchhhhcchhhhhhhHHHHHHHHh
Confidence 34667778899999999999999999999999999999998 88899999987532 23444444555444
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
...+ ..+++++||++|. |+++|++.|.+.
T Consensus 152 ~~~~----~~~i~~vSa~~g~-----------gv~~L~~~i~~~ 180 (186)
T d1mkya2 152 YFID----YSPLIFTSADKGW-----------NIDRMIDAMNLA 180 (186)
T ss_dssp GGGT----TSCEEECBTTTTB-----------SHHHHHHHHHHH
T ss_pred cccC----CCeEEEEeCCCCC-----------CHHHHHHHHHHH
Confidence 3333 3579999999884 889999988653
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.69 E-value=6.5e-17 Score=139.76 Aligned_cols=84 Identities=27% Similarity=0.452 Sum_probs=77.2
Q ss_pred CCCCe-eEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCcc
Q psy5021 849 TDKPF-LMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKRE 927 (1021)
Q Consensus 849 ~~~p~-~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~ 927 (1021)
..+|+ ||+|+++|+++| |+|++|+|++|.+++||+|.+.|. +++|++|++++.+++.|.|||+|+|+|++ +.+
T Consensus 5 ~~kp~~R~~Id~vf~i~G-gtVvtGtV~sG~i~~Gd~v~~~p~----~~~VksIq~~~~~v~~a~~G~~v~l~L~~-~~~ 78 (91)
T d1xe1a_ 5 SKKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPSG----IGGIVRIERNREKVEFAIAGDRIGISIEG-KIG 78 (91)
T ss_dssp CSSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEEECSSC----EEEEEEEEETTEEESEEETTCEEEEEEES-CCC
T ss_pred cCCCccEeeEEEEEEECC-cEEEEEEEeeCCcCCCCEEEECCc----cEEEEEEEEcceEhhhhhhcceeEEEEcC-CcC
Confidence 35676 999999999999 999999999999999999999873 47899999999999999999999999999 777
Q ss_pred CcccceEEeeC
Q psy5021 928 EVERGQVLAKI 938 (1021)
Q Consensus 928 ~i~~G~vl~~~ 938 (1021)
+++|||||+..
T Consensus 79 di~rGdvL~~~ 89 (91)
T d1xe1a_ 79 KVKKGDVLEIY 89 (91)
T ss_dssp CCCTTCEEEEE
T ss_pred CcCCCCEEEec
Confidence 89999999754
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=4.3e-17 Score=152.88 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=84.8
Q ss_pred CCCceEEEEEEEeecCCCce-EEEEEEEeeEEecCCEEEeCCCc---------eeeEeceEEEeecCCeeccccccCCCE
Q psy5021 294 NSNKFVSLVFKIFHDPFLGS-LSFIRIYSGFIKVGDLVYNSTKK---------VKEKIFRILRMFANSKKDINDAHFGDI 363 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~~g~-~~~~RV~sG~l~~gd~v~~~~~~---------~~~~i~~i~~~~g~~~~~v~~a~aGdI 363 (1021)
+++||+++|+|+.++++.|+ ++|+|||||+|++||.|++.+.+ ..++|.+||.++|++++++++|.||||
T Consensus 31 ~~~Pl~~~v~k~~~~~~~g~~~~~gRV~SGtl~~G~~v~vl~~~~~~~~~~~~~~~~i~~i~~~~g~~~~~v~~a~AGdI 110 (138)
T d1n0ua1 31 PKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNI 110 (138)
T ss_dssp TTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCE
T ss_pred CCCCEEEEEEeeccCCCCCEEEEEEEEEeceEcCCCEEEEecCCcccccccccceeeeeeeEEEecCceeeEeEEecCcE
Confidence 78999999999999999998 69999999999999999975322 357899999999999999999999999
Q ss_pred EEEecCCc-cccCCeeccCCcccccc
Q psy5021 364 VVIVGLKE-SSTGDTLCSLSENIQLE 388 (1021)
Q Consensus 364 v~i~gl~~-~~~gdtl~~~~~~~~~~ 388 (1021)
|+|.||++ +.+|+|||+...+.+++
T Consensus 111 vai~Gl~~~i~k~~Tl~~~~~~~pl~ 136 (138)
T d1n0ua1 111 IGLVGIDQFLLKTGTLTTSETAHNMK 136 (138)
T ss_dssp EEEESCTTTCCSSEEEESCTTCCCBC
T ss_pred EEEeccccceeccceecCCCCCccCC
Confidence 99999998 56699999987766654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=9.5e-17 Score=159.30 Aligned_cols=156 Identities=21% Similarity=0.217 Sum_probs=112.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA------ 725 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~------ 725 (1021)
.|++++|++|+|||||+|+|++.... ......+.|.......+......+.++|+||..
T Consensus 1 a~V~liG~~n~GKSsLi~~L~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 65 (171)
T d1mkya1 1 ATVLIVGRPNVGKSTLFNKLVKKKKA---------------IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI 65 (171)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcc---------------eecccCceeeccccccccccccccccccccceeeeeccc
Confidence 37899999999999999999974321 123334667666677788888899999999932
Q ss_pred ---hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 726 ---DYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 726 ---~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
.+...+...+..+|++++++|++++...+.++++.+++..++| +|+|+||+|+.... ..++...+...++
T Consensus 66 ~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~p-viiv~NK~Dl~~~~------~~~~~~~~~~~~~ 138 (171)
T d1mkya1 66 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVD-TILVANKAENLREF------EREVKPELYSLGF 138 (171)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCC-EEEEEESCCSHHHH------HHHTHHHHGGGSS
T ss_pred cccccccccccccccCcEEEEeeccccccccccccccccccccccc-ccccchhhhhhhhh------hhHHHHHHHhcCC
Confidence 2345566667899999999999999999999999999999999 88999999987421 1222222223343
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
..++++||++|. |+++|+++|.+.++.
T Consensus 139 ----~~~i~iSAk~g~-----------gid~L~~~i~~~l~e 165 (171)
T d1mkya1 139 ----GEPIPVSAEHNI-----------NLDTMLETIIKKLEE 165 (171)
T ss_dssp ----CSCEECBTTTTB-----------SHHHHHHHHHHHHHH
T ss_pred ----CCeEEEecCCCC-----------CHHHHHHHHHHhCCC
Confidence 246899999884 899999999887653
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=9.7e-17 Score=161.24 Aligned_cols=107 Identities=24% Similarity=0.348 Sum_probs=78.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|++|+|||||+|+|+...-.+. ...|.|... ..+.|. .+.++||||+..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~------------------~~~g~T~~~--~~~~~~------~~~ivDtpG~~~ 55 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRG------------------KRPGVTRKI--IEIEWK------NHKIIDMPGFGF 55 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSS------------------SSTTCTTSC--EEEEET------TEEEEECCCBSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee------------------CCCCEeecc--cccccc------cceecccCCcee
Confidence 589999999999999999974321111 123444432 234444 367899999632
Q ss_pred c---------------HHHHHHHhhccCeEEEEEeCC-----------CCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 90 F---------------TIEVERSLRVLDGAVIIICAS-----------SGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f---------------~~~~~~~l~~~D~~ilvvda~-----------~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
. ...+..+++.+|++++|+|+. .+...++.++++.+...++|+++|+||+|+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~ 134 (184)
T d2cxxa1 56 MMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI 134 (184)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred ccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehh
Confidence 2 223455678899999999996 3567778888898999999999999999985
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.67 E-value=2.7e-17 Score=143.97 Aligned_cols=90 Identities=27% Similarity=0.508 Sum_probs=80.4
Q ss_pred CCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEe-cccccceeccCceEEEEecccC
Q psy5021 847 RITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEM-FKKTLDEGLAGENVGILLRSVK 925 (1021)
Q Consensus 847 ~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~-~~~~~~~a~~G~~v~l~l~~~~ 925 (1021)
|..++||||+|+++|+ |.|+|++|+|++|.+++||++.+.|++. .++|++|+. +++++++|.|||+|+++|++ +
T Consensus 4 R~~~~PlR~pV~d~~k--g~G~vv~G~v~sG~i~~gd~v~i~P~~~--~~~Vk~I~~~~~~~v~~a~aGd~V~l~l~~-~ 78 (95)
T d1r5ba1 4 RKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQ--TLEVTAIYDEADEEISSSICGDQVRLRVRG-D 78 (95)
T ss_dssp HHHTSCCEEECCEEEE--SSSEEEEEECCBSEEETTEEEEEETTTE--EEEEEEEECTTCCEESEEETTCEEEEEEES-C
T ss_pred CCCCCCEEEEEEEEEc--CCCEEEEEEEeeCeEeCCCEEEEecCCC--EEEEEEEEEEccccccCcCCCCEEEEEEcC-c
Confidence 4457899999999995 8999999999999999999999998664 588999987 56789999999999999998 4
Q ss_pred ccCcccceEEeeCCCc
Q psy5021 926 REEVERGQVLAKIGSI 941 (1021)
Q Consensus 926 ~~~i~~G~vl~~~~~~ 941 (1021)
.+++++|+|||++++|
T Consensus 79 ~~di~rG~vl~~~~~P 94 (95)
T d1r5ba1 79 DSDVQTGYVLTSTKNP 94 (95)
T ss_dssp CTTCCTTCEEECSSSC
T ss_pred ccccCCCCEEEcCCCC
Confidence 5789999999998754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=2e-16 Score=160.62 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=81.1
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
|.+.++.|+|+|++|||||||+++|+..... ... . ...+.|... ...+. .+.+.++|
T Consensus 19 p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~-~~~---~------------~~~~~t~~~---~~~~~----~~~~~~~d 75 (195)
T d1svia_ 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNL-ART---S------------SKPGKTQTL---NFYII----NDELHFVD 75 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------------CCE---EEEEE----TTTEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHhcCCCce-EEe---e------------cccceeeec---ccccc----cccceEEE
Confidence 5667889999999999999999999743211 000 0 011122221 11222 45566788
Q ss_pred CCCC-------------CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 84 TPGH-------------VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~-------------~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
++|. ..+......+...+|++++|+|+.++...++.++++.+...++|+++|+||+|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~ 147 (195)
T d1svia_ 76 VPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147 (195)
T ss_dssp CCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred EEeeccccccccccchhhhHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhcccc
Confidence 8874 1223445566677899999999999999999999999999999999999999975
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1e-16 Score=160.99 Aligned_cols=156 Identities=23% Similarity=0.277 Sum_probs=105.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA------ 725 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~------ 725 (1021)
.|++++|.+|+|||||+|+|++.... .+...|+|.+... +.+. .+.|+||||+.
T Consensus 1 a~I~lvG~~nvGKSsLin~l~~~~~~----------------~~~~~g~T~~~~~--~~~~--~~~ivDtpG~~~~~~~~ 60 (184)
T d2cxxa1 1 ATIIFAGRSNVGKSTLIYRLTGKKVR----------------RGKRPGVTRKIIE--IEWK--NHKIIDMPGFGFMMGLP 60 (184)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS----------------SSSSTTCTTSCEE--EEET--TEEEEECCCBSCCTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce----------------eeCCCCEeecccc--cccc--cceecccCCceeccccc
Confidence 37899999999999999999974321 1233456655433 3333 46789999951
Q ss_pred ---------hhHHHHHHHhhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhH
Q psy5021 726 ---------DYIKNMITGAAQMDGAILVCSAVD-----------GPMPQTREHILLARQVGVPNIVVFLNKADCVQDKEL 785 (1021)
Q Consensus 726 ---------~~~~~~~~~~~~aD~ailVvDa~~-----------g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~ 785 (1021)
.+...+..++..+|++++|+|+.. +...++.+++..+...++| +|+|+||+|+.++.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p-~iiv~NK~D~~~~~~~ 139 (184)
T d2cxxa1 61 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNVQE 139 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSCHHH
T ss_pred cccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCC-EEEEEeeeehhhhHHH
Confidence 123334455678999999999863 4556778888888899999 9999999998763321
Q ss_pred HHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 786 LDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
..+.+.+.+. ..+......++|+||++| +|+++|+++|.+.+|
T Consensus 140 ---~~~~~~~~~~-~~~~~~~~~~~~vSA~~g-----------~gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 140 ---VINFLAEKFE-VPLSEIDKVFIPISAKFG-----------DNIERLKNRIFEVIR 182 (184)
T ss_dssp ---HHHHHHHHHT-CCGGGHHHHEEECCTTTC-----------TTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhc-ccccccCCeEEEEECCCC-----------CCHHHHHHHHHHHcc
Confidence 1122222211 112112345889999987 389999999987654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.66 E-value=3.2e-16 Score=154.30 Aligned_cols=112 Identities=21% Similarity=0.163 Sum_probs=81.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|+.|+|||||+++|.... ... ++ ..|+......+.+. +..+++||+||+.
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~--~~~-----------~~-------~~T~~~~~~~~~~~----~~~~~i~D~~G~~ 58 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQ--FNE-----------DM-------IPTVGFNMRKITKG----NVTIKLWDIGGQP 58 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCC-----------SC-------CCCCSEEEEEEEET----TEEEEEEEECCSH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC--CCC-----------cc-------cccceeeeeeeeee----eEEEEEeeccccc
Confidence 579999999999999999996421 110 00 12444344444555 8899999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHH----hhcCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQS----QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~----~~~~~p~iiviNK~D~~~~ 144 (1021)
.|...+...+..+|++++|+|+++...-. ....|..+ ...++|+++|+||+|+...
T Consensus 59 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~ 119 (164)
T d1zd9a1 59 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119 (164)
T ss_dssp HHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred cccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchh
Confidence 99999999999999999999998743322 23333333 2357899999999998754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.66 E-value=7e-16 Score=153.69 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=83.0
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.++-.+|+++|.+|+|||||+++|... .... .. ...|++ ...+.+. ++.+.++|
T Consensus 12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~--~~~~------------~~---~~~~~~----~~~i~~~----~~~~~i~d 66 (176)
T d1fzqa_ 12 APDQEVRILLLGLDNAGKTTLLKQLASE--DISH------------IT---PTQGFN----IKSVQSQ----GFKLNVWD 66 (176)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCS--CCEE------------EE---EETTEE----EEEEEET----TEEEEEEE
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhcC--CCCc------------ce---eeeeee----EEEeccC----CeeEeEee
Confidence 4455567999999999999999999421 1100 00 011222 2234455 78999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH----hhcCCCEEEEEeCcCCCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS----QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~----~~~~~p~iiviNK~D~~~~ 144 (1021)
+||+..|...+..+++.+|++|+|+|+++....+. ...|... ...++|+++++||+|+...
T Consensus 67 ~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~ 132 (176)
T d1fzqa_ 67 IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (176)
T ss_dssp CSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred ccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccc
Confidence 99999999999999999999999999987644332 2333333 2347899999999999754
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.65 E-value=1.3e-16 Score=144.33 Aligned_cols=95 Identities=26% Similarity=0.367 Sum_probs=87.1
Q ss_pred CCCCCCeeEEEEEEEeeCCcee--------EEEEEEEEEEeeCCCEEEEeecCC----------eeEEEEEEEEeccccc
Q psy5021 847 RITDKPFLMPIEDVFSISGRGT--------VVTGKIERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKKTL 908 (1021)
Q Consensus 847 ~~~~~p~~~~I~~~~~v~g~G~--------Vv~G~V~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~~~ 908 (1021)
|..+.|++|+|+++|.+++.|+ |++|+|++|.|++||+|.+.|+++ .++++|+||+.++.++
T Consensus 1 R~~~~p~~~~I~r~F~i~~~gt~~~~~~G~VvtGtv~sG~i~~GD~v~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~~~v 80 (118)
T d1s0ua1 1 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTIL 80 (118)
T ss_dssp CCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEE
T ss_pred CCCCCCcEEEEEeEEcccCCCCccccccccEEEeeecccEEeeCCEEEECCCCcccccceeeeeeeeEEEEEEEECCccc
Confidence 4568999999999999999777 999999999999999999999753 3678999999999999
Q ss_pred ceeccCceEEEEec---ccCccCcccceEEeeCCCc
Q psy5021 909 DEGLAGENVGILLR---SVKREEVERGQVLAKIGSI 941 (1021)
Q Consensus 909 ~~a~~G~~v~l~l~---~~~~~~i~~G~vl~~~~~~ 941 (1021)
++|.|||+|+++|+ +++..|+.+|+||++++..
T Consensus 81 ~~A~aG~~V~i~l~~d~~i~r~Di~~G~Vl~~pg~l 116 (118)
T d1s0ua1 81 RKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTL 116 (118)
T ss_dssp SEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCS
T ss_pred CEEeCCCEEEEEeccCCCccHHHheeeeEEeCCCCC
Confidence 99999999999998 8999999999999998753
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=5.3e-16 Score=152.12 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=81.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|++|||||||+++|+.....+.. ...|.|.......+.+. ++.+.++||||..+
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~----~~~~~~~d~~g~~~ 61 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGREAAIVT-----------------DIAGTTRDVLREHIHID----GMPLHIIDTAGLRE 61 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCC-----------------SSTTCCCSCEEEEEEET----TEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceEee-----------------cccccccceEeeeeecc----Cceeeecccccccc
Confidence 6899999999999999999854332211 12234444444556666 88999999999865
Q ss_pred cH--------HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 90 FT--------IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~--------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
.. ..+..+++.+|++++++|+.+.........|....+ .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~ 125 (161)
T d2gj8a1 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 125 (161)
T ss_dssp CSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred ccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhh
Confidence 53 334566789999999999998776666666654432 379999999999974
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=8.4e-16 Score=153.75 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=74.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
|-||||+|++|+|||||+++|+.....+.. ..+.|......... ...+..+.++||||+
T Consensus 1 ~~~VaivG~~nvGKSTLin~L~~~~~~~~~------------------~~~~t~~~~~~~~~---~~~~~~~~~~DtpG~ 59 (180)
T d1udxa2 1 IADVGLVGYPNAGKSSLLAAMTRAHPKIAP------------------YPFTTLSPNLGVVE---VSEEERFTLADIPGI 59 (180)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECC------------------CTTCSSCCEEEEEE---CSSSCEEEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceec------------------cCCCceeeeeceee---ecCCCeEEEcCCCee
Confidence 347999999999999999999532211111 01122222211111 223678999999995
Q ss_pred C-------CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHH-----hhcCCCEEEEEeCcCCCC
Q psy5021 88 V-------DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQS-----QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~-------~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~-----~~~~~p~iiviNK~D~~~ 143 (1021)
. .....+.+.+..+|.+++++|+.............+. ...++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 127 (180)
T d1udxa2 60 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 127 (180)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence 3 3446778889999999999999775433332222222 234689999999999853
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=1.1e-15 Score=149.53 Aligned_cols=111 Identities=19% Similarity=0.212 Sum_probs=84.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|++|+|||||+++|+.....+.. ...|.|.......+.+. +..+.++||||+..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~~~~~-----------------~~~~~~~~~~~~~~~~~----~~~~~~~Dt~G~~~ 60 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVT-----------------DIPGTTRDVISEEIVIR----GILFRIVDTAGVRS 60 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCCC-----------------CSSCCSSCSCCEEEEET----TEEEEEEESSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeee-----------------ccccccccceeEEEEeC----CeeEEecccccccc
Confidence 6999999999999999999865433221 11233444444455666 78999999999622
Q ss_pred ---------cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 90 ---------FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 ---------f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
....+.+++..+|++++|+|++++...+...++... ...|+++++||+|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~ 121 (160)
T d1xzpa2 61 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 121 (160)
T ss_dssp SCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred CCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccc
Confidence 135567778899999999999999998888877765 4678999999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.62 E-value=4.6e-16 Score=153.30 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=82.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|.+|+|||||+++|.... .. ..+.|+......+.++ ++.+.+|||||+.
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~----~~~~~~~D~~G~~ 57 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGED--VD-------------------TISPTLGFNIKTLEHR----GFKLNIWDVGGQK 57 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC--CS-------------------SCCCCSSEEEEEEEET----TEEEEEEEECCSH
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC--CC-------------------cccceEeeeeeecccc----ccceeeeecCcch
Confidence 369999999999999999984211 10 1123555555556666 8999999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCc-hhHHHHHHHH----hhcCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQ-PQTETVWFQS----QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~-~~t~~~~~~~----~~~~~p~iiviNK~D~~~~ 144 (1021)
.|...+...++.+|++++|+|+++-.. ......|... ...++|+++|+||+|++..
T Consensus 58 ~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 118 (165)
T d1ksha_ 58 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118 (165)
T ss_dssp HHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccc
Confidence 998888889999999999999987432 2333444433 3467899999999998754
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.60 E-value=7.6e-16 Score=132.97 Aligned_cols=88 Identities=19% Similarity=0.361 Sum_probs=81.0
Q ss_pred CCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCc
Q psy5021 850 DKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEV 929 (1021)
Q Consensus 850 ~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i 929 (1021)
+.+|||||+.+++.++.++.++|+|++|+|++||+|.+.|++. .++|++|++++.++++|.+|++|+|+|++ ..++
T Consensus 4 ~~~fr~pVQ~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Psg~--~~~Vk~I~~~~~~~~~a~~G~~v~l~L~~--~~di 79 (92)
T d1zunb1 4 YTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGK--SSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDI 79 (92)
T ss_dssp SSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCC--EEEEEEEEETTEEESEECTTCEEEEEESS--CCCC
T ss_pred CCCeEEeEEEEEccCCCccEEEEEEcccEEecCCEEEECCCCc--eEEEeEEEEcCcccCEEcCCCEEEEEEcC--cccc
Confidence 4589999999999888888899999999999999999999775 48999999999999999999999999985 7789
Q ss_pred ccceEEeeCCCc
Q psy5021 930 ERGQVLAKIGSI 941 (1021)
Q Consensus 930 ~~G~vl~~~~~~ 941 (1021)
.||||||+++++
T Consensus 80 ~RGdvl~~~~~~ 91 (92)
T d1zunb1 80 SRGDLLVHADNV 91 (92)
T ss_dssp CTTCEEEETTSC
T ss_pred CCCCEEecCCCC
Confidence 999999998764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.60 E-value=2.6e-15 Score=152.23 Aligned_cols=157 Identities=17% Similarity=0.267 Sum_probs=107.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC--------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG-------- 723 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG-------- 723 (1021)
..++++|++|+|||||+|+|++..... ......+.|.+...... ...+.++|++|
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~--------------~~~~~~~~t~~~~~~~~---~~~~~~~d~~~~~~~~~~~ 86 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLA--------------RTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSK 86 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEEE---TTTEEEEECCCBCCCSSCH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceE--------------Eeecccceeeecccccc---cccceEEEEEeeccccccc
Confidence 368999999999999999999743110 01111223333222222 23456777777
Q ss_pred -----hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 724 -----HADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 724 -----~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
+..+...+..++..+|++++|+|++++...++.+++.++...++| +++|+||+|+.+..+ .+...+.+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~p-iivv~NK~D~~~~~~-~~~~~~~~~~~l~ 164 (195)
T d1svia_ 87 SEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGK-WDKHAKVVRQTLN 164 (195)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGG-HHHHHHHHHHHHT
T ss_pred cccchhhhHHhhhhccccchhhhhhhhhccccccccccccccccccccCc-ceechhhccccCHHH-HHHHHHHHHHHhc
Confidence 223455666667788999999999999999999999999999999 999999999876333 3333344444443
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.. ...+++++||++| +|+++|+++|.+.+
T Consensus 165 ---~~-~~~~~~~~SA~~~-----------~gi~el~~~i~~~l 193 (195)
T d1svia_ 165 ---ID-PEDELILFSSETK-----------KGKDEAWGAIKKMI 193 (195)
T ss_dssp ---CC-TTSEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred ---cc-CCCCEEEEeCCCC-----------CCHHHHHHHHHHHh
Confidence 21 2468999999987 48999999887643
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=4.2e-15 Score=148.55 Aligned_cols=152 Identities=22% Similarity=0.269 Sum_probs=100.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeE-EEEeeCCeEEEEEecCChh------
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSH-VEYESENKHYAHVDCPGHA------ 725 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~-~~~~~~~~~i~liDtpG~~------ 725 (1021)
.+|++|.+|+|||||+|+|++....+.... +.|..... ......+..+.+|||||+.
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 66 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYP----------------FTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG 66 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCT----------------TCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccC----------------CCceeeeeceeeecCCCeEEEcCCCeeecCchHH
Confidence 478999999999999999998543332211 22222222 2233456789999999932
Q ss_pred -hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHH-----HHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 726 -DYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLA-----RQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 726 -~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~-----~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
.+...+...+..+|++++++|+..............+ ...++| +|+|+||+|+.+.+. .+ ++.+.+..
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~~-~~----~~~~~~~~ 140 (180)
T d1udxa2 67 KGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRP-SLVALNKVDLLEEEA-VK----ALADALAR 140 (180)
T ss_dssp CCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSC-EEEEEECCTTSCHHH-HH----HHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhh-hhhhhhhhhhhhHHH-HH----HHHHHHHh
Confidence 3455677888999999999998765433222222222 223577 899999999987322 22 23333332
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
. ..+++++||++| +|+++|++.|.+.+
T Consensus 141 ~-----~~~~~~iSA~tg-----------~gid~L~~~i~~~l 167 (180)
T d1udxa2 141 E-----GLAVLPVSALTG-----------AGLPALKEALHALV 167 (180)
T ss_dssp T-----TSCEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred c-----CCeEEEEEcCCC-----------CCHHHHHHHHHHHH
Confidence 2 357999999988 38899998887655
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=6.5e-15 Score=145.48 Aligned_cols=116 Identities=19% Similarity=0.107 Sum_probs=78.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.+-.|+++|..|+|||||+++|+...-... ....++.......+.+ .+..+.+++|||||
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~l~~wDt~G 63 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPA------------------FVSTVGIDFKVKTIYR--NDKRIKLQIWDTAG 63 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSS------------------CCCCCSEEEEEEEEEE--TTEEEEEEEEEECC
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCCcc------------------cccccccceeeEEEEe--ecceEEEEEEECCC
Confidence 456799999999999999999975321100 0011122221122222 23367899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH---hhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~---~~~~~p~iiviNK~D~~ 142 (1021)
+.+|...+..+++.+|++|+|+|.++...... ...|... .....|++++.||+|+.
T Consensus 64 ~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 123 (169)
T d3raba_ 64 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 123 (169)
T ss_dssp SGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCG
T ss_pred chhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccc
Confidence 99999999999999999999999988533322 2233333 23467888899999975
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.58 E-value=1.1e-15 Score=153.46 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=72.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-+|||+|++|+|||||+|+|......+.. ..+.|.......+.+. .+..+.++||||+.
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~------------------~~~~T~~~~~~~~~~~---~~~~~~~~DtpG~~ 60 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIAD------------------YHFTTLVPNLGMVETD---DGRSFVMADLPGLI 60 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESS------------------TTSSCCCCCEEEEECS---SSCEEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCceec------------------CCCceEeeeeceeEec---CCcEEEEecCCCcc
Confidence 47999999999999999999543221111 1233444443333433 14679999999962
Q ss_pred -------CcHHHHHHHhhccCeEEEEEeCCCCC--chhH----HHHHHHHh---hcCCCEEEEEeCcCCCC
Q psy5021 89 -------DFTIEVERSLRVLDGAVIIICASSGI--QPQT----ETVWFQSQ---KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 -------~f~~~~~~~l~~~D~~ilvvda~~g~--~~~t----~~~~~~~~---~~~~p~iiviNK~D~~~ 143 (1021)
.....+...+..+|.++++++...-. .... ...+.... ..++|+++|+||+|++.
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~ 131 (185)
T d1lnza2 61 EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 131 (185)
T ss_dssp HHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHh
Confidence 23345667778899999888876432 2111 11112221 23689999999999863
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.58 E-value=4.8e-15 Score=147.09 Aligned_cols=113 Identities=16% Similarity=0.084 Sum_probs=80.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+-.+|.++|.+|+|||||+++|.... .. ....|.........+. ...+.+|||||
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~--~~-------------------~~~~t~~~~~~~~~~~----~~~~~i~D~~g 65 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQ--SV-------------------TTIPTVGFNVETVTYK----NVKFNVWDVGG 65 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCC--CE-------------------EEEEETTEEEEEEEET----TEEEEEEEESC
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCC--CC-------------------CccceeeeeEEEeecc----ceeeEEecCCC
Confidence 34569999999999999999985211 00 0112222223333444 78999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
+..+...+...++.+|++|+|+|+++.-... ....|.... ..+.|+++++||+|++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~ 128 (173)
T d1e0sa_ 66 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 128 (173)
T ss_dssp CGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred cchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc
Confidence 9999999999999999999999998753333 223343332 347899999999999754
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.2e-15 Score=147.57 Aligned_cols=113 Identities=15% Similarity=0.049 Sum_probs=70.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
|-.|+++|..|+|||||+++|....- .. +...+..... ..+ ..++..+.+.+|||||+
T Consensus 1 ifKi~lvG~~~vGKTsLi~~~~~~~~--~~----------------~~~~~~~~~~--~~i--~~~~~~~~l~i~D~~g~ 58 (168)
T d2gjsa1 1 VYKVLLLGAPGVGKSALARIFGGVED--GP----------------EAEAAGHTYD--RSI--VVDGEEASLMVYDIWEQ 58 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHTC---------------------------CEEEE--EEE--EETTEEEEEEEEECC--
T ss_pred CeEEEEECCCCcCHHHHHHHHhCCcc--CC----------------cCCeeeeeec--cee--eccccccceeeeecccc
Confidence 34799999999999999999853110 00 0000011111 112 22345789999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh----hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~----~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++|+|+|.++.........| ..+. ..++|+++|.||+|+.
T Consensus 59 e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 118 (168)
T d2gjsa1 59 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 118 (168)
T ss_dssp -----CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCG
T ss_pred cccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchh
Confidence 99999999999999999999999976444443333 2232 2458999999999985
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.57 E-value=2e-15 Score=151.24 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=79.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++.-+|+++|..|+|||||+++|.... . . +...|.........++ +..+.+||||
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~--------~------~-------~~~~t~~~~~~~~~~~----~~~~~i~D~~ 69 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQIGE--------V------V-------TTKPTIGFNVETLSYK----NLKLNVWDLG 69 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSE--------E------E-------EECSSTTCCEEEEEET----TEEEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC--------C------C-------ccccccceEEEEEeeC----CEEEEEEecc
Confidence 455679999999999999999983211 0 0 0111333333344555 8899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
|+..|...+...++.+|++++|+|+++...... ...|.... ..+.|+++++||+|+..+
T Consensus 70 g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~ 133 (182)
T d1moza_ 70 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 133 (182)
T ss_dssp ----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred cccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc
Confidence 999999889999999999999999998755443 33444432 246899999999999754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6.6e-15 Score=144.65 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=80.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..|+|||||+++|+...-.. +... |+...........++..+.+++|||||+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~------------------~~~~--~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 61 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDN------------------TYQA--TIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCS------------------SCCC--CCSEEEEEEEEECSSCEEEEEEEEECCSGG
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCC------------------cccc--ceeeeccceeeccCCCceeeeecccCCcch
Confidence 58999999999999999997432110 0111 222222223333345578999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH---hhcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~---~~~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++++|+|.++....+. ...|... ...+.|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (164)
T d1yzqa1 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 118 (164)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred hccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchh
Confidence 99999999999999999999988654443 3333333 23578999999999984
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3e-15 Score=148.24 Aligned_cols=117 Identities=19% Similarity=0.146 Sum_probs=81.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+.+-.|+++|..|+|||||+++|+...-... ...+++.......+ ..++..+.+.+||||
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~------------------~~~~~~~~~~~~~~--~~~~~~~~l~i~Dt~ 62 (171)
T d2ew1a1 3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG------------------QGATIGVDFMIKTV--EINGEKVKLQIWDTA 62 (171)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT------------------CCCCCSEEEEEEEE--EETTEEEEEEEEEEC
T ss_pred CEEEEEEEECCCCcCHHHHHHHHHhCCCCCc------------------ccccccceEEEEEE--EECCEEEEEEEEECC
Confidence 3456799999999999999999974321110 11122222222222 223446889999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHHh---hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++++|+|.++..... ....|..+. ..+.|++++.||+|+.
T Consensus 63 G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~ 123 (171)
T d2ew1a1 63 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 123 (171)
T ss_dssp CSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccc
Confidence 99999999999999999999999998753332 333444432 3468899999999974
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=2.8e-15 Score=148.18 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=104.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|.+++|||||+++|++... ........|.+..............+.||||||+++|...+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~ 72 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADDSF--------------TPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITT 72 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC--------------CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHcCCC--------------CcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHH
Confidence 467888899999999999987431 111222334444444444444446788999999999998888
Q ss_pred HHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
.+++.+|++|+|+|+++..... ..+++...... ...+++++.||+|+.+..... .++...+.+..+ +++
T Consensus 73 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~---~~~~~~~~~~~~-----~~~ 144 (169)
T d3raba_ 73 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS---SERGRQLADHLG-----FEF 144 (169)
T ss_dssp TTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSC---HHHHHHHHHHHT-----CEE
T ss_pred HHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccc---hhhhHHHHHHcC-----CEE
Confidence 8999999999999998743322 22333333332 233488889999986522111 123344455554 479
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+.+||++|. |++++++.|.+.
T Consensus 145 ~e~Sak~g~-----------gv~e~f~~l~~~ 165 (169)
T d3raba_ 145 FEASAKDNI-----------NVKQTFERLVDV 165 (169)
T ss_dssp EECBTTTTB-----------SHHHHHHHHHHH
T ss_pred EEecCCCCc-----------CHHHHHHHHHHH
Confidence 999999883 888888888754
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=5.9e-15 Score=144.46 Aligned_cols=148 Identities=19% Similarity=0.161 Sum_probs=105.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh-----
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD----- 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~----- 726 (1021)
+.++++|.+|+|||||+|+|++...... ....|.|.+.....+...+..+.++|+||..+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 66 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIV---------------TDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 66 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCC---------------CSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEe---------------ecccccccceEeeeeeccCceeeeccccccccccccc
Confidence 3578899999999999999997543222 12235566666667788889999999999533
Q ss_pred ---hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH-c--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 727 ---YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQ-V--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 727 ---~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~-~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
....+..++..+|++++++|+.........+++..... . ++| +|+|+||+|+.+... .++..
T Consensus 67 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-iilv~NK~Dl~~~~~-----------~~~~~ 134 (161)
T d2gj8a1 67 ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP-ITVVRNKADITGETL-----------GMSEV 134 (161)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCC-EEEEEECHHHHCCCC-----------EEEEE
T ss_pred hhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccc-eeeccchhhhhhhHH-----------HHHHh
Confidence 24445566789999999999998665444444433323 2 677 999999999865321 11122
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
...+++++||++| +|+++|+++|.+.
T Consensus 135 ----~~~~~~~iSAk~~-----------~gi~~L~~~l~~~ 160 (161)
T d2gj8a1 135 ----NGHALIRLSARTG-----------EGVDVLRNHLKQS 160 (161)
T ss_dssp ----TTEEEEECCTTTC-----------TTHHHHHHHHHHH
T ss_pred ----CCCcEEEEECCCC-----------CCHHHHHHHHHhh
Confidence 2368999999988 4899999998753
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=7.3e-15 Score=144.82 Aligned_cols=113 Identities=18% Similarity=0.085 Sum_probs=80.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+++|....-... .-.|.........+..++....+.+|||+|+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~~f~~~--------------------~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 65 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVEDSFDPN--------------------INPTIGASFMTKTVQYQNELHKFLIWDTAGLER 65 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTT--------------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcc--------------------cccccccccccccccccccccceeeeecCCchh
Confidence 589999999999999999974321100 011222222223333334467788999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HH---hhcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~---~~~~~p~iiviNK~D~~ 142 (1021)
+......+++.+|++|+|+|.++.........|. .. ...+.|+++|.||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 122 (167)
T d1z0ja1 66 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 122 (167)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred hhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhc
Confidence 9999999999999999999998755444444432 22 34578999999999984
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.56 E-value=2.4e-14 Score=142.34 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=108.7
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
-+.+.+.++|.+++|||||+++|.+..... .....|. ....+...+..+.+||+||+++|.
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~---------------~~~~~~~----~~~~i~~~~~~~~i~d~~g~~~~~ 74 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH---------------ITPTQGF----NIKSVQSQGFKLNVWDIGGQRKIR 74 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE---------------EEEETTE----EEEEEEETTEEEEEEECSSCGGGH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhcCCCCc---------------ceeeeee----eEEEeccCCeeEeEeeccccccch
Confidence 356778899999999999999998743110 0111232 233456678899999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..++..+|++++|+|+++.... +..+++..... .++| ++|++||+|+.+... ...+.+.+ ......
T Consensus 75 ~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~p-illv~nK~Dl~~~~~-~~~~~~~~----~~~~~~ 148 (176)
T d1fzqa_ 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAAP-ASEIAEGL----NLHTIR 148 (176)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCCC-HHHHHHHT----TGGGCC
T ss_pred hHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCe-EEEEEEecccccccc-HHHHHHHH----HHHHHH
Confidence 9999999999999999999875433 33344433222 2567 999999999976322 22222222 111112
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
...++++++||++| +|+++++++|.+.
T Consensus 149 ~~~~~~~~~SA~tg-----------~gv~e~~~~l~~~ 175 (176)
T d1fzqa_ 149 DRVWQIQSCSALTG-----------EGVQDGMNWVCKN 175 (176)
T ss_dssp SSCEEEEECCTTTC-----------TTHHHHHHHHHHT
T ss_pred hcCCEEEEEeCCCC-----------CCHHHHHHHHHhc
Confidence 23578999999988 4899999998763
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=5.5e-15 Score=144.55 Aligned_cols=148 Identities=20% Similarity=0.173 Sum_probs=105.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh-------
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA------- 725 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~------- 725 (1021)
.++++|.+|+|||||+|+|++...... ....|.|.......+...+..+.++||||..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 66 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDRAIV---------------TDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLV 66 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCC---------------CCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee---------------eccccccccceeEEEEeCCeeEEeccccccccCCccHH
Confidence 468899999999999999997542221 2223455555666677888999999999942
Q ss_pred -h-hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 726 -D-YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 726 -~-~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
. ....+...+..+|++++|+|++++...+..+....+ ...+ +++++||+|+.+... .+.+ ... ++.
T Consensus 67 ~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~-~i~~~~k~d~~~~~~-~~~~----~~~---~~~- 134 (160)
T d1xzpa2 67 ERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR-YLVVINKVDVVEKIN-EEEI----KNK---LGT- 134 (160)
T ss_dssp CCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSS-EEEEEEECSSCCCCC-HHHH----HHH---HTC-
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhc--cccc-ceeeeeeccccchhh-hHHH----HHH---hCC-
Confidence 2 245667778999999999999998877766554433 3445 899999999986322 1222 221 222
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+++++||++|. |+++|+++|.+
T Consensus 135 --~~~~~~vSA~~g~-----------gi~~L~~~I~k 158 (160)
T d1xzpa2 135 --DRHMVKISALKGE-----------GLEKLEESIYR 158 (160)
T ss_dssp --STTEEEEEGGGTC-----------CHHHHHHHHHH
T ss_pred --CCcEEEEECCCCC-----------CHHHHHHHHHh
Confidence 2468999999883 89999998854
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=4.1e-15 Score=146.65 Aligned_cols=161 Identities=20% Similarity=0.204 Sum_probs=110.0
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
||.+.+.++|.+++|||||+++|++..- ........+.+..............+.+||++|++++.
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f--------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSF--------------DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR 67 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCC--------------CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCC--------------CcccccccccccccccccccccccceeeeecCCchhhh
Confidence 5667788999999999999999997431 11122233333333333333334556799999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.....+++.+|++|+|+|.++....+.. .++...... ..| +++|.||+|+.+..... .++..++.+..+
T Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v~---~~~~~~~~~~~~--- 140 (167)
T d1z0ja1 68 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVREVM---ERDAKDYADSIH--- 140 (167)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT---
T ss_pred HHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcce-EEEecccchhccccchh---HHHHHHHHHHcC---
Confidence 9899999999999999999874433332 233233322 345 88999999986522211 234455555554
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| +|+++++..|.+.+|
T Consensus 141 --~~~~e~SAk~~-----------~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 141 --AIFVETSAKNA-----------ININELFIEISRRIP 166 (167)
T ss_dssp --CEEEECBTTTT-----------BSHHHHHHHHHHHCC
T ss_pred --CEEEEEecCCC-----------CCHHHHHHHHHHhCC
Confidence 57999999988 489999999987665
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1e-14 Score=143.59 Aligned_cols=116 Identities=17% Similarity=0.120 Sum_probs=80.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.+-.|+++|+.++|||||+++|+...-.... ...++. ......+..++..+.+.+|||||
T Consensus 3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~------------------~~~~~~--~~~~~~~~~~~~~~~l~i~D~~g 62 (166)
T d1z0fa1 3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADC------------------PHTIGV--EFGTRIIEVSGQKIKLQIWDTAG 62 (166)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSC------------------TTSCCC--CEEEEEEEETTEEEEEEEEECTT
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcc------------------cccccc--cceeEEEEECCEEEEEEEeccCC
Confidence 3557999999999999999999753321111 111111 11222233344467999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH---hhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~---~~~~~p~iiviNK~D~~ 142 (1021)
+.+|.......++.+|++|+|+|.++....+. ...|..+ .....|++++.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 122 (166)
T d1z0fa1 63 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 122 (166)
T ss_dssp GGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred chhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccch
Confidence 99999999999999999999999987533322 2333333 34467899999999974
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=3.9e-15 Score=146.31 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=81.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|.+|+|||||+++|+...-. . ++ -.|+........+..++..+.+.+|||||+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~~~~--~-----------~~-------~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 63 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKGIFT--K-----------DY-------KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCC--C-----------CS-------SCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCC--c-----------cc-------ccccccccceeeeeecCceeeeeeeccCCccc
Confidence 5899999999999999999742211 0 00 11333333334444445578899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh--hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~--~~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++++|+|.++....+...-| ..+. ..++|+++|.||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~ 119 (164)
T d1z2aa1 64 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 119 (164)
T ss_dssp TTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred hhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcc
Confidence 998889999999999999999876444333333 3333 3479999999999974
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.55 E-value=2.2e-14 Score=140.81 Aligned_cols=156 Identities=13% Similarity=0.040 Sum_probs=107.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||+++|.+..... .. ..|+......++.++..+.+||+||++.|...+
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~--------------~~----~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 64 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQFNE--------------DM----IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMW 64 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCC--------------SC----CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCC--------------cc----cccceeeeeeeeeeeEEEEEeeccccccccccc
Confidence 456688999999999999998743110 00 123444445567788999999999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
..++..+|++++|+|+++... .....++..+.. .++| +++|+||+|+.+... ...+.+ .+.........
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-i~lv~nK~Dl~~~~~-~~~i~~----~~~~~~~~~~~ 138 (164)
T d1zd9a1 65 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGALD-EKELIE----KMNLSAIQDRE 138 (164)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCC-HHHHHH----HTTGGGCCSSC
T ss_pred cccccccchhhcccccccccccchhhhhhhhhhhhhcccCCc-EEEEEeccccchhhh-HHHHHH----HHHHHHHHhCC
Confidence 999999999999999987433 333334433322 2677 899999999875322 122222 22212222335
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++| .|+++++++|.+.+
T Consensus 139 ~~~~e~Sa~~g-----------~gv~e~~~~l~~~~ 163 (164)
T d1zd9a1 139 ICCYSISCKEK-----------DNIDITLQWLIQHS 163 (164)
T ss_dssp EEEEECCTTTC-----------TTHHHHHHHHHHTC
T ss_pred CEEEEEeCcCC-----------cCHHHHHHHHHHcc
Confidence 78999999988 48999999987643
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7.2e-15 Score=145.92 Aligned_cols=115 Identities=18% Similarity=0.147 Sum_probs=79.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.-.|+++|+.|+|||||+++|....-.... .+ |............++....+.+|||||+
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~------------------~~--t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 64 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDS------------------NH--TIGVEFGSKIINVGGKYVKLQIWDTAGQ 64 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTC------------------CC--CSEEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccc------------------cc--ccccceeeEEEEecCcceeEEEEECCCc
Confidence 456999999999999999999743211000 00 1111111222222334678999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH---hhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~---~~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++|+|+|.++.........| ..+ ...++|++++.||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 123 (174)
T d2bmea1 65 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 123 (174)
T ss_dssp GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEeccccc
Confidence 99999999999999999999999875443333333 222 23478999999999974
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.2e-14 Score=144.12 Aligned_cols=117 Identities=16% Similarity=0.136 Sum_probs=81.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+...|+++|..++|||||+++|+....... +.+ .+.......+ ..++..+.+.+|||
T Consensus 3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~-------------~~~------t~~~~~~~~~--~~~~~~~~l~~~d~ 61 (173)
T d2fn4a1 3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSD-------------YDP------TIEDSYTKIC--SVDGIPARLDILDT 61 (173)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS-------------CCT------TCCEEEEEEE--EETTEEEEEEEEEC
T ss_pred CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcc-------------ccc------ccccceeeEe--ccCCeeeeeecccc
Confidence 45667899999999999999999974321100 000 0011111112 22344688999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH----hhcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~ 142 (1021)
+|+.+|.......++.+|++|+|+|.++........-| ..+ ...++|+++|.||+|+.
T Consensus 62 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~ 124 (173)
T d2fn4a1 62 AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124 (173)
T ss_dssp CCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred ccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechh
Confidence 99999999999999999999999999976544433333 222 23578999999999974
|
| >d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Probab=99.54 E-value=1.8e-15 Score=130.76 Aligned_cols=73 Identities=48% Similarity=0.825 Sum_probs=69.9
Q ss_pred ceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 590 YILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 590 ~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+||||||+++|.+|++|+|+|+++|++|||++.+++..++...|+|++|++++++|.++||+.|+|.+.+...
T Consensus 1 VllEPi~~~~I~~p~e~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~iP~~e~~g~~~~Lrs~T~G~g~~~~~ 73 (89)
T d2bv3a5 1 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMF 73 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHTTTCEEEEEEEETTEEEEEEEEEGGGCTTHHHHHHHTTTTCCEEEEE
T ss_pred CEECcEEEEEEEECHHHHHHHHHHHHHcCCccccCCcccccEEEEEECCHHHHhhHHHhhhhcCCCCEEEEEE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999887654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.54 E-value=9.2e-15 Score=143.74 Aligned_cols=156 Identities=18% Similarity=0.136 Sum_probs=107.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
|.+.+.++|.+++|||||+++|.+... + +.+.|+......+..++..+.+|||||++.|..
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-------------~------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 61 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDV-------------D------TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 61 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC-------------S------SCCCCSSEEEEEEEETTEEEEEEEECCSHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCC-------------C------cccceEeeeeeeccccccceeeeecCcchhhhh
Confidence 345677899999999999999987421 0 113344455566778889999999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..++..+|++++|+|+++... ....+.+..... .++| ++||+||+|+.+... .+.. ...+.......
T Consensus 62 ~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~----~~~~~~~~~~~ 135 (165)
T d1ksha_ 62 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGALS-CNAI----QEALELDSIRS 135 (165)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HHHH----HHHTTGGGCCS
T ss_pred HHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCc-eEEEEeccccccccC-HHHH----HHHHHhhhhhc
Confidence 88888899999999999887433 344444443322 3566 899999999865221 1211 11211111222
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++++||++| +|+.+++++|.+.
T Consensus 136 ~~~~~~~~Sa~~g-----------~gv~e~~~~l~~~ 161 (165)
T d1ksha_ 136 HHWRIQGCSAVTG-----------EDLLPGIDWLLDD 161 (165)
T ss_dssp SCEEEEECCTTTC-----------TTHHHHHHHHHHH
T ss_pred CCCEEEEEECCCC-----------CCHHHHHHHHHHH
Confidence 3578999999988 3888888888654
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=6.6e-15 Score=145.74 Aligned_cols=153 Identities=19% Similarity=0.103 Sum_probs=104.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|.+++|||||+++|++... ..+...+.+.+.....+..++ ..+.+|||||+++|..
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~~~f----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~ 69 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQGLF----------------PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS 69 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC----------------CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC----------------CCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 3456788899999999999997431 112222334444444455554 4567899999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++++|+|.++... ....+++..+... ++| +|+|.||+|+.+..... .++...+.+..+
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-~ilvgnK~D~~~~~~v~---~~~~~~~~~~~~---- 141 (171)
T d2ew1a1 70 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERREVS---QQRAEEFSEAQD---- 141 (171)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCSSC---HHHHHHHHHHHT----
T ss_pred HHHHHHhccceEEEeeecccchhhhhhhhhhhhhccccccccc-EEEEEeecccccccchh---hhHHHHHHHhCC----
Confidence 99889999999999999887433 3344555555443 345 88899999986522111 123444555444
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++++||++| +|+++++..|.+
T Consensus 142 -~~~~~~SAktg-----------~gV~e~f~~l~~ 164 (171)
T d2ew1a1 142 -MYYLETSAKES-----------DNVEKLFLDLAC 164 (171)
T ss_dssp -CCEEECCTTTC-----------TTHHHHHHHHHH
T ss_pred -CEEEEEccCCC-----------CCHHHHHHHHHH
Confidence 46899999988 388888776654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=5e-15 Score=145.58 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=102.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+-+.++|.+++|||||+++|++... ......+.|.+..............+.+|||+|+.++....
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~--------------~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 68 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIF--------------TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT 68 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC--------------CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC--------------CcccccccccccceeeeeecCceeeeeeeccCCccchhhhh
Confidence 3456788999999999999997431 11111222333332222222223567899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
..+++.+|++++|+|.++....+. ..++..+.. .++| +|+|.||+|+.+..... .++...+.+.++ ++
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-iilVgnK~Dl~~~~~v~---~~~~~~~~~~~~-----~~ 139 (164)
T d1z2aa1 69 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSCIK---NEEAEGLAKRLK-----LR 139 (164)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCSSC---HHHHHHHHHHHT-----CE
T ss_pred hhhhccCceEEEEEeccchhhhhhcccccccccccCCCce-EEEeeccCCcccceeee---ehhhHHHHHHcC-----CE
Confidence 888999999999999987543222 333344333 2667 89999999987532211 123444555554 57
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++||++|. |++++++.|.+
T Consensus 140 ~~e~Sak~g~-----------~v~e~f~~l~~ 160 (164)
T d1z2aa1 140 FYRTSVKEDL-----------NVSEVFKYLAE 160 (164)
T ss_dssp EEECBTTTTB-----------SSHHHHHHHHH
T ss_pred EEEeccCCCc-----------CHHHHHHHHHH
Confidence 9999999884 78888888764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=8.4e-15 Score=148.19 Aligned_cols=118 Identities=18% Similarity=0.073 Sum_probs=80.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+.+-.|+|+|..++|||||+++|+...-.-.. ..|+........+..++..+.+++||||
T Consensus 4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~--------------------~~t~~~~~~~~~i~~~~~~~~l~i~Dt~ 63 (194)
T d2bcgy1 4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY--------------------ISTIGVDFKIKTVELDGKTVKLQIWDTA 63 (194)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTC--------------------CCSSCCCEEEEEEEETTEEEEEEEECCT
T ss_pred CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCc--------------------CCccceeEEEEEEEEeeEEEEEEEEECC
Confidence 34667999999999999999999742211000 0011111122222223447899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHH---hhcCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQS---QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~---~~~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|++.....+... .|..+ ...++|++++.||+|+..
T Consensus 64 G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~ 125 (194)
T d2bcgy1 64 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 125 (194)
T ss_dssp TTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccc
Confidence 99999988889999999999999998754333322 22222 345689999999999864
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.7e-14 Score=142.59 Aligned_cols=114 Identities=16% Similarity=0.072 Sum_probs=79.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
..|+++|..|+|||||+++|+...-.-. .. .|.........+...+....+++|||||+.
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~------------------~~--~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 66 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQFHEF------------------QE--STIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT------------------CC--CCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcc------------------cc--cccccccccceeeccceEEEEEeccCCCch
Confidence 3689999999999999999974321100 00 112222222333334446789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHh---hcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~---~~~~p~iiviNK~D~~ 142 (1021)
+|.......++.+|++++|+|.++...... ...|.... ..++|++++.||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 124 (170)
T d1r2qa_ 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp GGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeeccccccc
Confidence 999999999999999999999987544333 33334332 3468999999999974
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.52 E-value=4.3e-15 Score=147.44 Aligned_cols=118 Identities=19% Similarity=0.088 Sum_probs=60.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+++-.|+++|+.++|||||+++|+...- +.+..+.++.......+.. ++..+.+++||||
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~D~~ 63 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAF------------------NSTFISTIGIDFKIRTIEL--DGKRIKLQIWDTA 63 (173)
T ss_dssp SEEEEEEEECCCCC----------------------------------CHHHHHCEEEEEEEEEE--TTEEEEEEEEEC-
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCC------------------CCccCccccceEEEEEEEE--CCEEEEEEEEECC
Confidence 4567799999999999999999963211 0111222222222222332 3446889999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHH-HHHH---hhcCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV-WFQS---QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~-~~~~---~~~~~p~iiviNK~D~~~ 143 (1021)
|+..|...+..+++.+|++|+|+|+++......... |+.+ ...+.|+++|.||.|+..
T Consensus 64 G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~ 125 (173)
T d2fu5c1 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 125 (173)
T ss_dssp --------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred CchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchh
Confidence 999999999999999999999999988543332222 2232 345689999999999853
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.3e-14 Score=143.04 Aligned_cols=153 Identities=22% Similarity=0.183 Sum_probs=91.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|.+++|||||+++|.+.... ......+.+ ......+......+.+|||||+++|...+.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~~---------------~~~~~~~~~-~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~ 66 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVEDG---------------PEAEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPG 66 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC------------------------CEE-EEEEEEETTEEEEEEEEECC-------CHH
T ss_pred EEEEECCCCcCHHHHHHHHhCCccC---------------CcCCeeeee-ecceeeccccccceeeeecccccccceecc
Confidence 3567889999999999999874311 011111111 112222333335678899999999988888
Q ss_pred HHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
.+++.+|++|+|+|.++....+. ..++..+.. ..+| +++|.||+|+.+..+.. ..+..++.+..+ +
T Consensus 67 ~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~v~---~~~~~~~~~~~~-----~ 137 (168)
T d2gjsa1 67 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSREVS---VDEGRACAVVFD-----C 137 (168)
T ss_dssp HHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT-----S
T ss_pred cchhhhhhhceeccccccccccccccccchhhcccccccce-EEEeecccchhhhcchh---HHHHHHHHHhcC-----C
Confidence 99999999999999987443332 233333332 2456 89999999987532211 123344445444 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||++|. |++++++.|.+.
T Consensus 138 ~~~e~Sak~~~-----------~v~~~f~~l~~~ 160 (168)
T d2gjsa1 138 KFIETSAALHH-----------NVQALFEGVVRQ 160 (168)
T ss_dssp EEEECBTTTTB-----------SHHHHHHHHHHH
T ss_pred EEEEEeCCCCc-----------CHHHHHHHHHHH
Confidence 78999999884 888888887653
|
| >d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.52 E-value=2.8e-15 Score=131.60 Aligned_cols=73 Identities=27% Similarity=0.443 Sum_probs=69.9
Q ss_pred ceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 590 YILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 590 ~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+||||||+++|.+|++++|+|+++|++|||.|.+++..+++..|+|.+|++++++|.++||+.|+|.+.+...
T Consensus 1 VllEPi~~~~I~~p~e~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~iP~~e~~g~~~~Lrs~T~G~g~~~~~ 73 (96)
T d2dy1a5 1 VLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLE 73 (96)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEE
T ss_pred CeECcEEEEEEEECHHHHHHHHHHHHhcCCEEeeccccCCcEEEEEEEeHHHhhCHHHHhhhhCCCcEEEEEE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999887754
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=6.3e-14 Score=140.46 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=84.5
Q ss_pred CCC-CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 1 MKN-KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 1 m~~-~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
|.+ |-..+-+|+++|..++|||||+++|+... ... ++. .|+... .......++..+.+
T Consensus 1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~--f~~-----------~~~-------~Ti~~~-~~~~~~~~~~~~~l 59 (185)
T d2atxa1 1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDA--FPE-----------EYV-------PTVFDH-YAVSVTVGGKQYLL 59 (185)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSS--CCC-----------SCC-------CSSCCC-EEEEEESSSCEEEE
T ss_pred CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCC--CCC-----------cCC-------Cceeee-eeEEEeeCCceEEe
Confidence 655 55667789999999999999999997422 111 000 122111 11122224456889
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH---hhcCCCEEEEEeCcCCCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS---QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~---~~~~~p~iiviNK~D~~~ 143 (1021)
++|||||+..|......+++.+|++++|+|+++....+. ...|... ...++|+++|.||+|+..
T Consensus 60 ~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 127 (185)
T d2atxa1 60 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 127 (185)
T ss_dssp EEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred ecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeecccccc
Confidence 999999999999999999999999999999987543322 2223222 245789999999999864
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=5e-14 Score=139.82 Aligned_cols=116 Identities=18% Similarity=0.115 Sum_probs=68.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEee-cccCceeEEEEcCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWE-VNKFKYMINIIDTP 85 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~-~~~~~~~i~liDtP 85 (1021)
++-.|+++|..++|||||+++|....-.... . .|.........+. .+.....+.++|||
T Consensus 1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~-------------~-------~t~~~~~~~~~~~~~~~~~~~~~~~d~~ 60 (175)
T d1ky3a_ 1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQY-------------K-------ATIGADFLTKEVTVDGDKVATMQVWDTA 60 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----------------------CCCSCEEEEECCSSSCCEEEEEECCC
T ss_pred CeEEEEEECCCCcCHHHHHHHHHcCCCCCcc-------------C-------cccccceeeeeeeecCcccccceeeccC
Confidence 3567999999999999999999753211000 0 0111111111111 12335678999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh-------hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ-------KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~-------~~~~p~iiviNK~D~~ 142 (1021)
|+.++......+++.+|++++|+|+++....+....| ..+. ..++|+++++||+|+.
T Consensus 61 g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~ 125 (175)
T d1ky3a_ 61 GQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 125 (175)
T ss_dssp ----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred CchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchh
Confidence 9999999999999999999999999876543333333 2222 1478999999999985
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=6.5e-14 Score=138.29 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=72.4
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.-.|+++|..++|||||+++|+......... . ..-+.++.. ..+..++..+.+++|||||+
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~------~---------~~~~~~~~~----~~~~~~~~~~~l~i~Dt~G~ 66 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF------I---------STVGIDFRN----KVLDVDGVKVKLQMWDTAGQ 66 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCC------C---------CCCSCEEEE----EEEEETTEEEEEEEEECCCC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccc------c---------ceeeeeeEE----EEEEecCcEEEEEEEECCCc
Confidence 4569999999999999999997532111100 0 000122222 22333344688999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH---hhcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS---QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~---~~~~~p~iiviNK~D~~~ 143 (1021)
.+|...+...++.+|++++|+|.++....+....| ... .....|++++.||+|...
T Consensus 67 e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~ 126 (170)
T d2g6ba1 67 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126 (170)
T ss_dssp --------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred hhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhh
Confidence 99999899999999999999999875443333332 222 234678999999999864
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.8e-14 Score=139.39 Aligned_cols=116 Identities=19% Similarity=0.156 Sum_probs=80.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.+-.|+++|..|+|||||+++|+...-.. +...+.+.......+.. ++....+.++||||
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~~i~d~~g 62 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL------------------ESKSTIGVEFATRSIQV--DGKTIKAQIWDTAG 62 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCCSCEEEEEEEEE--TTEEEEEEEEECSS
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCC------------------cccccccceeeeEEEEE--CCEEEEEEecccCC
Confidence 45679999999999999999997422111 11112222222222222 34467899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCc-hhHHHHHHHHh---hcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQ-PQTETVWFQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~-~~t~~~~~~~~---~~~~p~iiviNK~D~~ 142 (1021)
+.+|.......++.+|++|+|+|.++... ......|..+. ..++|+++|.||+|+.
T Consensus 63 ~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~ 122 (175)
T d2f9la1 63 QERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 122 (175)
T ss_dssp GGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred cHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeeccc
Confidence 99999999999999999999999987532 22333444433 3468999999999985
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.9e-14 Score=141.30 Aligned_cols=154 Identities=19% Similarity=0.148 Sum_probs=107.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|..++|||||+++|++.. ...+...+++.......+..++ ..+.+||++|+++|....
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 66 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYDS----------------FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLI 66 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC----------------CCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGH
T ss_pred EEEECCCCcCHHHHHHHHHhCC----------------CCCccccceeeeccceeeccCCCceeeeecccCCcchhccch
Confidence 4678899999999999999743 1122223334444444444443 567899999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..++..+|++++|+|.++.... ...+++...... ++| +++|.||+|+.+.... ..++...+.+.++ +
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~~---~~~~~~~~~~~~~-----~ 137 (164)
T d1yzqa1 67 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQV---SIEEGERKAKELN-----V 137 (164)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT-----C
T ss_pred HHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCce-EEEEecccchhhhhhh---hHHHHHHHHHHcC-----C
Confidence 9999999999999999875543 334444444332 455 9999999998752221 1134444555544 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+++++||++|. |++++++.|.+.+|
T Consensus 138 ~~~e~SAk~g~-----------~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 138 MFIETSAKAGY-----------NVKQLFRRVAAALP 162 (164)
T ss_dssp EEEECCTTTCT-----------THHHHHHHHHHHSC
T ss_pred EEEEecCCCCc-----------CHHHHHHHHHHhhC
Confidence 79999999884 89999999988665
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.51 E-value=2.2e-14 Score=128.72 Aligned_cols=92 Identities=24% Similarity=0.312 Sum_probs=82.6
Q ss_pred CCCCCCeeEEEEEEEeeCCcee--------EEEEEEEEEEeeCCCEEEEeecCC----------eeEEEEEEEEeccccc
Q psy5021 847 RITDKPFLMPIEDVFSISGRGT--------VVTGKIERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKKTL 908 (1021)
Q Consensus 847 ~~~~~p~~~~I~~~~~v~g~G~--------Vv~G~V~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~~~ 908 (1021)
|..++|++|+|++.|.+.+.|+ |++|+|++|+|++||++.+.|.+. ..+++|++|+.++.++
T Consensus 1 Rd~~~~p~~~V~R~F~vn~pgt~~~~~~G~VvtGtv~~G~ikvGD~i~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~~~v 80 (114)
T d2qn6a1 1 RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEF 80 (114)
T ss_dssp CCTTSCCEEEEEEEECCCCTTCBGGGCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEE
T ss_pred CCCCCCceEEEeccccccCCCCCcccccceEEEEEEccccEEeCCEEEEcCCCccccCceeeeeecceEEEEEEECCccc
Confidence 3457899999999999988665 999999999999999999999763 2568999999999999
Q ss_pred ceeccCceEEEEec---ccCccCcccceEEeeC
Q psy5021 909 DEGLAGENVGILLR---SVKREEVERGQVLAKI 938 (1021)
Q Consensus 909 ~~a~~G~~v~l~l~---~~~~~~i~~G~vl~~~ 938 (1021)
++|.||++|+++|+ +++..|+.+|+||+.+
T Consensus 81 ~~A~aG~~V~i~l~~d~~isr~D~l~G~Vl~~~ 113 (114)
T d2qn6a1 81 KEAKPGGLVAIGTYLDPSLTKADNLLGSIITLA 113 (114)
T ss_dssp SEECSSSCEEEEESSCHHHHGGGTTTTCEEEET
T ss_pred CEEeCCCEEEEEeccCCCcchhheeeeeEEecC
Confidence 99999999999999 7888999999999754
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=5.4e-14 Score=138.29 Aligned_cols=116 Identities=18% Similarity=0.128 Sum_probs=78.6
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+-.|+++|..++|||||+++|+...-. . +..+ |+........+..++..+.+++|||||+
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~--~----------------~~~~--t~~~~~~~~~i~~~~~~~~~~i~Dt~G~ 61 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFN--P----------------SFIT--TIGIDFKIKTVDINGKKVKLQIWDTAGQ 61 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC--C-------------------------CCEEEEEEESSSCEEEEEEECCTTG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCC--C----------------ccCC--ccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 567999999999999999999742210 0 0111 2222222222333455788999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-H---hhcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-S---QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~---~~~~~p~iiviNK~D~~~ 143 (1021)
..|...+..+++.+|++++|+|.++....+....|.. . .....|++++.||.|...
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~ 121 (166)
T d1g16a_ 62 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121 (166)
T ss_dssp GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh
Confidence 9999888999999999999999998654444333322 2 234577888999999753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.50 E-value=6e-14 Score=138.99 Aligned_cols=156 Identities=17% Similarity=0.081 Sum_probs=107.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+-++|.+++|||||+++|...... ....|..............+.+||+||+..+...
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 72 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQSV-------------------TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 72 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCCCE-------------------EEEEETTEEEEEEEETTEEEEEEEESCCGGGHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-------------------CccceeeeeEEEeeccceeeEEecCCCcchhhhH
Confidence 456778899999999999999864310 0112333334455667788999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+...+..+|++++|+|+++... ....++|..... ...| ++|++||+|+.+... ...+..++ ..-.....
T Consensus 73 ~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~-~~~i~~~~----~~~~~~~~ 146 (173)
T d1e0sa_ 73 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK-PHEIQEKL----GLTRIRDR 146 (173)
T ss_dssp HGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCC-HHHHHHHT----TGGGCCSS
T ss_pred HHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccce-eeeeeeccccccccc-HHHHHHHH----HHHHHHhC
Confidence 9999999999999999987433 233444444332 2455 999999999875221 22222222 11112233
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++.++++||++| +|+++++++|.+.+
T Consensus 147 ~~~~~e~SA~tg-----------~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 147 NWYVQPSCATSG-----------DGLYEGLTWLTSNY 172 (173)
T ss_dssp CEEEEECBTTTT-----------BTHHHHHHHHHHHC
T ss_pred CCEEEEeeCCCC-----------cCHHHHHHHHHHhc
Confidence 578999999988 48999999997643
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=8e-15 Score=144.94 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=80.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..++|||||+++|+... ... ++ -.|+........+..++..+.+.+|||||+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~--f~~-----------~~-------~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 64 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE--FEK-----------KY-------VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-------C-----------CE-------EEETTEEEEEEEECBTTCCEEEEEEECTTHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhCC--CCc-----------cc-------ccceeccccccccccccccccccccccccccc
Confidence 69999999999999999985321 000 00 11333333334444456678999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHHh--hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQSQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~~--~~~~p~iiviNK~D~~~ 143 (1021)
|...+...++.+|++++|+|.++....+... .+.... ..++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 121 (170)
T d1i2ma_ 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 121 (170)
T ss_dssp HSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSC
T ss_pred cceecchhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhh
Confidence 9888888999999999999999864433332 333322 35799999999999854
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.6e-13 Score=136.34 Aligned_cols=115 Identities=17% Similarity=0.061 Sum_probs=79.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+.|+++|..++|||||+++|....- .. ++ ..|+... ....+..++..+.+.+|||||+.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f--~~-----------~~-------~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~ 61 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQF--PE-----------VY-------VPTVFEN-YVADIEVDGKQVELALWDTAGLE 61 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC--CS-----------SC-------CCCSEEE-EEEEEEETTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC--CC-----------Cc-------CCceeee-ccccccccccceeeeccccCccc
Confidence 5799999999999999999974221 10 00 0122211 11222223447889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH---hhcCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS---QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~---~~~~~p~iiviNK~D~~~~ 144 (1021)
.|...+..+++.+|++|+|+|.++....+. ...|... ...++|++++.||+|+...
T Consensus 62 ~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~ 121 (177)
T d1kmqa_ 62 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121 (177)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTC
T ss_pred hhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccch
Confidence 999999999999999999999987543222 2223222 2247999999999998654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.49 E-value=1.5e-14 Score=145.20 Aligned_cols=153 Identities=17% Similarity=0.206 Sum_probs=98.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCChhh-----
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGHAD----- 726 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~~~----- 726 (1021)
.+|++|.+|+|||||+|+|++....+... .+.|.......+.+ +++.+.+|||||+.+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~----------------~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 66 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADY----------------HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG 66 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESST----------------TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecC----------------CCceEeeeeceeEecCCcEEEEecCCCcccCchHH
Confidence 47899999999999999999865433222 23344444444444 457899999999633
Q ss_pred --hHHHHHHHhhhCCEEEEEEECCCCC--cHHHH-HHH-HHHHH-----cCCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 727 --YIKNMITGAAQMDGAILVCSAVDGP--MPQTR-EHI-LLARQ-----VGVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 727 --~~~~~~~~~~~aD~ailVvDa~~g~--~~qt~-e~l-~~~~~-----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
....+...+..++.++++++...-. ..... ..+ ..... .++| +|+|+||+|+.+.....+ .+.+
T Consensus 67 ~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp-~ivv~NK~Dl~~~~~~~~----~~~~ 141 (185)
T d1lnza2 67 VGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKMDMPEAAENLE----AFKE 141 (185)
T ss_dssp TTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECTTSTTHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCc-chhhccccchHhHHHHHH----HHHH
Confidence 2345667778899999999866432 11111 111 11111 2456 788999999986432222 2222
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.++ ...+++++||++|. |+++|+++|.+.++
T Consensus 142 ---~~~---~~~~v~~iSA~~g~-----------Gi~~L~~~i~~~L~ 172 (185)
T d1lnza2 142 ---KLT---DDYPVFPISAVTRE-----------GLRELLFEVANQLE 172 (185)
T ss_dssp ---HCC---SCCCBCCCSSCCSS-----------TTHHHHHHHHHHHT
T ss_pred ---Hhc---cCCcEEEEECCCCC-----------CHHHHHHHHHHhhh
Confidence 222 23578999999883 88999999887664
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.49 E-value=1.7e-13 Score=133.46 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=78.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|.+|+|||||+++|....-.... .+.........+. .+.+.++|+||...
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~~~---------------------~~~~~~~~~~~~~----~~~~~~~d~~g~~~ 56 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVTTI---------------------PTIGFNVETVEYK----NISFTVWDVGGQDK 56 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCC---------------------CCSSCCEEEEECS----SCEEEEEECCCCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccc---------------------cceeeEEEEEeee----eEEEEEecCCCccc
Confidence 5889999999999999999754321110 0111111222333 78999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHH-HHHH----hhcCCCEEEEEeCcCCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETV-WFQS----QKYKVPKMIFVNKMDRIGAN 145 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~-~~~~----~~~~~p~iiviNK~D~~~~~ 145 (1021)
+.......++.+|++++++|..+......... +... .....|++++.||.|+....
T Consensus 57 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~ 117 (160)
T d1r8sa_ 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 117 (160)
T ss_dssp GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred chhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc
Confidence 99999999999999999999987543333222 2232 23468899999999987553
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.3e-14 Score=140.04 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=81.1
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+-+.|+++|..|+|||||+++|+...-. . +...|+.... ...+..++..+.+.++||+|
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~--~------------------~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g 61 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFV--D------------------SYDPTIENTF-TKLITVNGQEYHLQLVDTAG 61 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC--S------------------CCCSSCCEEE-EEEEEETTEEEEEEEEECCC
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCC--c------------------ccCcceeccc-ceEEecCcEEEEeeeccccc
Confidence 4578999999999999999999753211 0 0011222221 11222345578899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH----hhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~ 142 (1021)
..+|.......++.+|++|+|+|.++....+....| ..+ ...++|++++.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 122 (167)
T d1xtqa1 62 QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122 (167)
T ss_dssp CCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCG
T ss_pred ccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccc
Confidence 999988788889999999999999986544444333 222 34578999999999974
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=4.6e-14 Score=139.39 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=107.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||+++|++.. +........+.+..............+.+||+||+++|...+
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~--------------f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 72 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQ--------------FHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--------------CCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--------------CCcccccccccccccceeeccceEEEEEeccCCCchhhhhhH
Confidence 456788999999999999999743 112222333444433333333334567889999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++++|+|.++... .+...++..+... ++| +++|.||+|+.+..... .++..++.+..+ +
T Consensus 73 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v~---~e~~~~~~~~~~-----~ 143 (170)
T d1r2qa_ 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLANKRAVD---FQEAQSYADDNS-----L 143 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT-----C
T ss_pred HHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCce-EEeeccccccccccccc---HHHHHHHHHhcC-----C
Confidence 999999999999999887443 3334444444332 455 88999999986522111 123344444443 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+++.+||++|. |++++++.|.+.++
T Consensus 144 ~~~e~SAk~g~-----------~V~e~f~~l~~~i~ 168 (170)
T d1r2qa_ 144 LFMETSAKTSM-----------NVNEIFMAIAKKLP 168 (170)
T ss_dssp EEEECCTTTCT-----------THHHHHHHHHHTSC
T ss_pred EEEEeeCCCCC-----------CHHHHHHHHHHHHh
Confidence 89999999884 89999999877553
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.9e-14 Score=139.37 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=104.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~~~~ 729 (1021)
+.+.++|.+++|||||+++|++... ..+...+.+.+.....+..++. .+.+||+||+++|..
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 68 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKF----------------MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 68 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC----------------CSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC----------------CCcccccccccceeEEEEECCEEEEEEEeccCCchhHHH
Confidence 3466889999999999999997431 1112223333344444444544 678899999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQVG--VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~~--ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
.....++.+|++|+|+|.++..+. ....++..+.... .++++++.||+|+...... ..++...+.+..+
T Consensus 69 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~---~~~~~~~~~~~~~----- 140 (166)
T d1z0fa1 69 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV---TYEEAKQFAEENG----- 140 (166)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS---CHHHHHHHHHHTT-----
T ss_pred HHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhccc---HHHHHHHHHHHcC-----
Confidence 888999999999999999874432 2233444444332 2348899999998652211 1233444555544
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++.+||++|. |++++++.|.+
T Consensus 141 ~~~~e~Saktg~-----------~v~e~f~~i~~ 163 (166)
T d1z0fa1 141 LLFLEASAKTGE-----------NVEDAFLEAAK 163 (166)
T ss_dssp CEEEECCTTTCT-----------THHHHHHHHHH
T ss_pred CEEEEEeCCCCC-----------CHHHHHHHHHH
Confidence 579999999884 88898887764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.1e-14 Score=141.30 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=100.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
-+.++|.+++|||||+++|+..... ....+..+.+..............+.+|||||+++|...+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 72 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEKKFK--------------DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTR 72 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCC--------------TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCC--------------cccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHH
Confidence 4678899999999999999864311 11111222233322233333345678999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTR-EHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
.+++.+|++++|+|.++....... .++..+... ++| +++|.||+|+........ .....+.+..+ ++
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~---~~~~~~~~~~~-----~~ 143 (174)
T d2bmea1 73 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREVTF---LEASRFAQENE-----LM 143 (174)
T ss_dssp TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCH---HHHHHHHHHTT-----CE
T ss_pred HHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceE-EEEEEecccccchhchhh---hHHHHHHHhCC-----CE
Confidence 999999999999999874433322 233332222 456 999999999865222111 22333444333 58
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++.+||++|. |++++++.|.+
T Consensus 144 ~~e~Sak~~~-----------gi~e~f~~l~~ 164 (174)
T d2bmea1 144 FLETSALTGE-----------NVEEAFVQCAR 164 (174)
T ss_dssp EEECCTTTCT-----------THHHHHHHHHH
T ss_pred EEEeeCCCCc-----------CHHHHHHHHHH
Confidence 9999999873 88888777654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=7.8e-14 Score=137.86 Aligned_cols=112 Identities=16% Similarity=0.176 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..++|||||+++|+... ... ++ -.|+.... ...+..++..+.+.+|||+|...
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~--f~~-----------~~-------~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~ 62 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGT--FRE-----------SY-------IPTVEDTY-RQVISCDKSICTLQITDTTGSHQ 62 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC--CCS-----------SC-------CCCSCEEE-EEEEEETTEEEEEEEEECCSCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC-----------cc-------Ccceeecc-ccceeeccccceecccccccccc
Confidence 58999999999999999997421 100 00 01222111 11222244567889999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHh-----hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQ-----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~-----~~~~p~iiviNK~D~~ 142 (1021)
|......+++.+|++|+|+|.++.-.... ...|..+. ..++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~ 121 (171)
T d2erxa1 63 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121 (171)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred ccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccc
Confidence 99999999999999999999987433222 22333322 2568999999999974
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=6.4e-14 Score=138.37 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=79.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..++|||||+++++...-. . +.. .|+........+..++..+.+.+|||+|+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~--~----------------~~~--~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~ 64 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFA--E----------------NKE--PTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--T----------------TCC--CCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCC--c----------------ccc--ccccceeeccccccccccccccccccCCchh
Confidence 5899999999999999999743211 0 001 1222222222233345578999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH---hhcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~---~~~~~p~iiviNK~D~~ 142 (1021)
+.......++.+|++++|+|.++.........| ... .....|.+++.||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~ 121 (170)
T d1ek0a_ 65 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML 121 (170)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccc
Confidence 999999999999999999999986444443333 222 23467899999999974
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.48 E-value=3.3e-14 Score=142.20 Aligned_cols=158 Identities=21% Similarity=0.130 Sum_probs=103.7
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
-+.+.+.++|.+++|||||+++|.+..... ...|...........+..+.+||+||++.|.
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQIGEVVT-------------------TKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 75 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE-------------------ECSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCc-------------------cccccceEEEEEeeCCEEEEEEecccccccc
Confidence 345677789999999999999998643110 0112222334556678899999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..++..+|++++|+|+++.... ...+++..... .+.| ++||+||+|+.+... .. ++.+.+......
T Consensus 76 ~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~p-iliv~NK~Dl~~~~~-~~----~i~~~~~~~~~~ 149 (182)
T d1moza_ 76 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGALS-AS----EVSKELNLVELK 149 (182)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTCCC-HH----HHHHHTTTTTCC
T ss_pred hhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcc-eEEEEEeeccccccC-HH----HHHHHHHHHHHh
Confidence 8888888999999999999876543 34444443322 2455 999999999975211 12 222222211222
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
...++++++||++| +|+++++++|.+.+
T Consensus 150 ~~~~~~~e~SA~~g-----------~gv~e~~~~l~~~i 177 (182)
T d1moza_ 150 DRSWSIVASSAIKG-----------EGITEGLDWLIDVI 177 (182)
T ss_dssp SSCEEEEEEBGGGT-----------BTHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCCC-----------CCHHHHHHHHHHHH
Confidence 33578999999988 48888888887643
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=3.7e-13 Score=133.83 Aligned_cols=115 Identities=20% Similarity=0.199 Sum_probs=74.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDt 84 (1021)
..+-+|+|+|++|||||||+|+|+.....+.. .. +.|.... ....... ...+..+|+
T Consensus 3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~----~~--------------~~t~~~~~~~~~~~~----~~~~~~~~~ 60 (179)
T d1egaa1 3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITS----RK--------------AQTTRHRIVGIHTEG----AYQAIYVDT 60 (179)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECC----CC--------------SSCCSSCEEEEEEET----TEEEEEESS
T ss_pred ccccEEEEECCCCCCHHHHHHHHhCCCceeec----cC--------------CCceEEEEEeeeecC----CceeEeecC
Confidence 34678999999999999999999743321111 00 1111111 1112222 556778899
Q ss_pred CCCCCcHHHHHHH---------hhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERS---------LRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~---------l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
||........... ...+|.+++++|+.. ...+...++..+.+...|.++++||+|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~ 127 (179)
T d1egaa1 61 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127 (179)
T ss_dssp SSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred CCceecchhhhhhhhhhccccchhhcceeEEEEecCc-cchhHHHHHHHhhhccCceeeeeeeeeccc
Confidence 9976554332222 235788888888764 556677777788888999999999999764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.47 E-value=1.1e-13 Score=136.22 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=77.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+-.|+++|..++|||||+++++...- .. ++.+ |+.... ......++..+.+.+|||||+
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f--~~-----------~~~~-------T~~~~~-~~~~~~~~~~~~l~i~d~~g~ 62 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VE-----------DYEP-------TKADSY-RKKVVLDGEEVQIDILDTAGQ 62 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CS-----------CCCT-------TCCEEE-EEEEEETTEEEEEEEEECCC-
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCC--Cc-----------ccCC-------cccccc-ccccccccccccccccccccc
Confidence 45799999999999999999974221 10 0100 111111 111222445788999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH----hhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~ 142 (1021)
.++.......++.+|++++|+|.++....+....| ..+ ...++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~ 122 (168)
T d1u8za_ 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp --CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred cchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEecccccc
Confidence 99999999999999999999999986554444444 222 23578999999999974
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=6.7e-14 Score=137.77 Aligned_cols=113 Identities=19% Similarity=0.134 Sum_probs=78.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+++|..|+|||||+++|+...-.... ..|+... ....+..++....+.+||++|..
T Consensus 4 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~--------------------~~t~~~~-~~~~~~~~~~~~~l~~~d~~g~~ 62 (167)
T d1kaoa_ 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKY--------------------DPTIEDF-YRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCC--------------------CTTCCEE-EEEEEEETTEEEEEEEEECCCTT
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCcc--------------------CCceeee-eeeeeecCcceEeeccccCCCcc
Confidence 36999999999999999999753211000 0111111 11122224446789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH----hhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~ 142 (1021)
.+.......++.+|++++|+|.++........-| ..+ ...++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 121 (167)
T d1kaoa_ 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred ccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchh
Confidence 9999999999999999999999975443333333 222 23568999999999975
|
| >d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Elongation factor/aminomethyltransferase common domain superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain domain: Elongation factor Tu (EF-Tu) species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.47 E-value=4.7e-14 Score=122.79 Aligned_cols=77 Identities=39% Similarity=0.733 Sum_probs=73.3
Q ss_pred eeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 945 ~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
++|+|+|++|+|+.|+..+|+..||+|++||++++++|.+.+....+.+.|||.+.|.|++.+|+++++|+||+|||
T Consensus 2 ~~F~A~vyvL~~~EGGR~tp~~~gY~pq~~~~t~d~t~~i~~~~~~~~v~PGd~~~v~~~l~~P~~le~g~rF~iRE 78 (103)
T d1d2ea2 2 QKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRD 78 (103)
T ss_dssp EEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEECCSSCCCBCTTCEEEEEEEEEEEECCCTTCEEEEEE
T ss_pred cEEEEEEEEEECCcCCceeEEeecceeeEEEecccccEEEEecCCccccccCCceEEEEEECCceeecCCCEEEEEE
Confidence 68999999999998888999999999999999999998888777789999999999999999999999999999997
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=6.9e-14 Score=137.69 Aligned_cols=155 Identities=20% Similarity=0.162 Sum_probs=103.7
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
||.+.+.++|.+++|||||+++|++..-. ...+...+ +.....+..++ ..+.+||++|++.
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~--------------~~~~~t~~---~~~~~~~~~~~~~~~l~~~d~~g~~~ 63 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFI--------------EKYDPTIE---DFYRKEIEVDSSPSVLEILDTAGTEQ 63 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCC--------------SCCCTTCC---EEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCC--------------CccCCcee---eeeeeeeecCcceEeeccccCCCccc
Confidence 45677888999999999999999974311 11111112 12222233333 4677899999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
+......+++.+|++++|+|.++..... ...++..+.. .++| ++||.||+|+........ ++...+.+..+
T Consensus 64 ~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~---~~~~~~~~~~~ 139 (167)
T d1kaoa_ 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREVSS---SEGRALAEEWG 139 (167)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCSCH---HHHHHHHHHHT
T ss_pred cccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCC-EEEEEEccchhhcccchH---HHHHHHHHHcC
Confidence 9999999999999999999998744322 2333333332 2467 999999999875322111 23344444444
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++++||++| .|++++++.|.+
T Consensus 140 -----~~~~e~Sak~g-----------~~i~e~f~~i~~ 162 (167)
T d1kaoa_ 140 -----CPFMETSAKSK-----------TMVDELFAEIVR 162 (167)
T ss_dssp -----SCEEEECTTCH-----------HHHHHHHHHHHH
T ss_pred -----CeEEEECCCCC-----------cCHHHHHHHHHH
Confidence 46899999988 489999888765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=4.1e-14 Score=139.78 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=107.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|..++|||||++++++..- ........|.........+......+.+||++|++++...+
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f--------------~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~ 69 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDF--------------AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--------------CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC--------------CccccccccceeeccccccccccccccccccCCchhHHHHH
Confidence 4566788999999999999997431 11122333444433333333334578899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTRE-HILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e-~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
..++..+|++++|+|.++........ ++..... ...++++++.||+|+.+......-...+..++.+..+ ++
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~-----~~ 144 (170)
T d1ek0a_ 70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKG-----LL 144 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-----CE
T ss_pred HHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcC-----CE
Confidence 88999999999999998754333332 2222222 2334588899999986521111111133444555544 57
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++.+||++|. |++++++.|.+.++
T Consensus 145 ~~e~Sak~g~-----------gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 145 FFETSAKTGE-----------NVNDVFLGIGEKIP 168 (170)
T ss_dssp EEECCTTTCT-----------THHHHHHHHHTTSC
T ss_pred EEEecCCCCc-----------CHHHHHHHHHHHhc
Confidence 9999999883 89999999987664
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.1e-13 Score=132.79 Aligned_cols=113 Identities=15% Similarity=0.187 Sum_probs=78.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..++|||||+++|+...-.-. ...|+..... ......+..+.+++||+||+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~~~~~--------------------~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~ 63 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNHFVDE--------------------YDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCCS--------------------CCCCSEEEEE-EEEEETTEEEEEEEEEECCCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCc--------------------cCCccceeec-cceeeeceeeeeeeeeccCccc
Confidence 489999999999999999975321100 0011111111 1112234468899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HH----hhcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QS----QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~----~~~~~p~iiviNK~D~~~ 143 (1021)
|.......++.+|++++|+|.++....+...-|. .+ ...++|++++.||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (166)
T d1ctqa_ 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122 (166)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC
T ss_pred cccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc
Confidence 9999999999999999999998754443333332 22 235689999999999853
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.8e-13 Score=132.05 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=73.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+++|..++|||||+++++...-. . ++.+ |... ........++..+.+.+|||+|+.
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~--~-----------~~~~-------t~~~-~~~~~~~~~~~~~~~~~~d~~g~~ 64 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQSYFV--T-----------DYDP-------TIED-SYTKQCVIDDRAARLDILDTAGQE 64 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC--S-----------SCCT-------TCCE-EEEEEEEETTEEEEEEEEECC---
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--c-----------ccCc-------cccc-ceeeeeeecccccccccccccccc
Confidence 36999999999999999999753211 0 0000 1110 011112223446889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-H----HHhhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-F----QSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~----~~~~~~~p~iiviNK~D~~ 142 (1021)
+|.......++.+|++++|+|.++........-| . .......|+++|.||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~ 123 (171)
T d2erya1 65 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123 (171)
T ss_dssp -CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCT
T ss_pred cccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchh
Confidence 9999999999999999999999875333322222 2 2334578999999999985
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.47 E-value=1.6e-14 Score=151.64 Aligned_cols=136 Identities=17% Similarity=0.096 Sum_probs=83.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccc--cCCcccccCh---------HHHhhhCceeeeeeeEE---Ee-e---
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTTITDWM---------QQEQERGITITSASVSI---FW-E--- 71 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~--~~~~~~~d~~---------~~e~~rgiTi~~~~~~~---~~-~--- 71 (1021)
-|+|+||+|||||||+++|++........+-+ +.++...++. ..+.............. .+ .
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKF 81 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTTH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHhhhccCCchhhhhHhHHhhH
Confidence 37999999999999999999765544333322 2222211110 00000000000000000 00 0
Q ss_pred --------cccCceeEEEEcCCCCCCcHHHHHHHhhcc-----CeEEEEEeCCCCCchhHHHHHHHH-----hhcCCCEE
Q psy5021 72 --------VNKFKYMINIIDTPGHVDFTIEVERSLRVL-----DGAVIIICASSGIQPQTETVWFQS-----QKYKVPKM 133 (1021)
Q Consensus 72 --------~~~~~~~i~liDtPG~~~f~~~~~~~l~~~-----D~~ilvvda~~g~~~~t~~~~~~~-----~~~~~p~i 133 (1021)
.......+.++|||||.++...+......+ +.+++++|+..+.++++....... .+.+.|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 161 (244)
T d1yrba1 82 NEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTI 161 (244)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHhhccccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCce
Confidence 001245799999999999877766665444 479999999999999887655433 35689999
Q ss_pred EEEeCcCCCCCC
Q psy5021 134 IFVNKMDRIGAN 145 (1021)
Q Consensus 134 iviNK~D~~~~~ 145 (1021)
+++||+|+..++
T Consensus 162 vvinK~D~~~~~ 173 (244)
T d1yrba1 162 PALNKVDLLSEE 173 (244)
T ss_dssp EEECCGGGCCHH
T ss_pred eeeeccccccHH
Confidence 999999998654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=5.3e-14 Score=138.49 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=74.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+++|..|+|||||+++|+...- .. +...|+........+..++..+.+++|||+|+.
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f--~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 63 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKF--ND------------------KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCC--CS------------------SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC--Cc------------------ccccccccchheeeeccCCccceeeeeccCCcc
Confidence 4689999999999999999974211 10 001122222223333334557899999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH---hhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~---~~~~~p~iiviNK~D~~ 142 (1021)
++......+++.+|++|+|+|.++....+....| +.. .....|++++.||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 121 (167)
T d1z08a1 64 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121 (167)
T ss_dssp ------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred eecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccc
Confidence 9998898999999999999999986544443333 222 24567889999999985
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=6.6e-14 Score=139.25 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=77.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++|....-. . +....++.......+ ..++..+.+++|||||+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~~~ 68 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDTFD--P----------------ELAATIGVDFKVKTI--SVDGNKAKLAIWDTAGQER 68 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--T----------------TCCCCCSEEEEEEEE--EETTEEEEEEEEEECSSGG
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCC--C----------------ccccceeecceeEEE--EEeccccEEEEEECCCchh
Confidence 5999999999999999999742210 0 011112222222222 2234478899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHh----hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~----~~~~p~iiviNK~D~~ 142 (1021)
+...+...++.+|++|+|+|.++....+. ...+..+. ....|++++.||.|..
T Consensus 69 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~ 126 (177)
T d1x3sa1 69 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 126 (177)
T ss_dssp GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred hHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc
Confidence 99889999999999999999987533322 23333433 3457888999999975
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=2.4e-14 Score=141.97 Aligned_cols=154 Identities=17% Similarity=0.130 Sum_probs=77.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
-+.++|.+++|||||+++|++.. .........|.+.... .++.++ ..+.+|||||++.|...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~--------------~~~~~~~t~~~~~~~~--~~~~~~~~~~l~i~D~~G~e~~~~~ 71 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSEDA--------------FNSTFISTIGIDFKIR--TIELDGKRIKLQIWDTAGQERFRTI 71 (173)
T ss_dssp EEEEECCCCC------------------------------CHHHHHCEEEEEE--EEEETTEEEEEEEEEC---------
T ss_pred EEEEECCCCcCHHHHHHHHHhCC--------------CCCccCccccceEEEE--EEEECCEEEEEEEEECCCchhhHHH
Confidence 46788999999999999999743 1122233334444333 444444 45678999999999998
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..+++.+|++|+|+|+++....... .++..+... +.| +++|.||.|+........ .+...+.+..+
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~~k~D~~~~~~~~~---~~~~~~~~~~~----- 142 (173)
T d2fu5c1 72 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQVSK---ERGEKLALDYG----- 142 (173)
T ss_dssp CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCCSCH---HHHHHHHHHHT-----
T ss_pred HHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCce-EEEEEecccchhhcccHH---HHHHHHHHhcC-----
Confidence 88889999999999999874432222 222333222 345 889999999875322111 12233333333
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++.+||++| +|++++++.|.+.+
T Consensus 143 ~~~~e~Sa~~g-----------~gv~e~f~~l~~~i 167 (173)
T d2fu5c1 143 IKFMETSAKAN-----------INVENAFFTLARDI 167 (173)
T ss_dssp CEEEECCC--------------CCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 57899999988 38888988887543
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=8.9e-14 Score=139.23 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=80.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+++|..|+|||||+++|+...-. . ++ -.|+........+...+....+.++||||+.
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~--~-----------~~-------~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 62 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFS--N-----------QY-------KATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--S-----------SC-------CCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC--C-----------Cc-------CCccceeeeeeeeeeCCceEEEEeeecCCcc
Confidence 46999999999999999999752210 0 00 1133333333344445557889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHh-------hcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQ-------KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~-------~~~~p~iiviNK~D~~~ 143 (1021)
++...+...+..+|++++++|.++........-|. ... ..++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~ 125 (184)
T d1vg8a_ 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 125 (184)
T ss_dssp GGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred cccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc
Confidence 99888899999999999999998744333322232 221 24689999999999853
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.7e-14 Score=138.91 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=101.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||+++|++... ..+...+.+.......+..++ ..+.+||+||+++|...
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~ 69 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNEF----------------NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI 69 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC----------------CC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC----------------CCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHH
Confidence 466888999999999999987431 112222333333444444444 46779999999999998
Q ss_pred HHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGP-MPQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+...++.+|++|+|+|.++.. +....+++..+... ++| +++|.||+|+.+...... .....+.+.. .
T Consensus 70 ~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~p-iilvgnK~Dl~~~~~~~~---~~~~~~~~~~-----~ 140 (175)
T d2f9la1 70 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPT---DEARAFAEKN-----N 140 (175)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCH---HHHHHHHHHT-----T
T ss_pred HHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCc-EEEEEeeecccccccchH---HHHHHhhccc-----C
Confidence 899999999999999998743 23445556555554 356 999999999875221111 1112222222 2
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+++++||++|. |++++++.|.+
T Consensus 141 ~~~~e~Sa~~g~-----------~i~e~f~~l~~ 163 (175)
T d2f9la1 141 LSFIETSALDST-----------NVEEAFKNILT 163 (175)
T ss_dssp CEEEECCTTTCT-----------THHHHHHHHHH
T ss_pred ceEEEEecCCCc-----------CHHHHHHHHHH
Confidence 579999999883 77777766654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=3.4e-14 Score=143.58 Aligned_cols=156 Identities=14% Similarity=0.084 Sum_probs=102.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|..++|||||+++|++.. +........|.+.......+......+.+|||||+++|...+
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~~~--------------~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~ 72 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSDDT--------------YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 72 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC--------------CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC
T ss_pred EEEEEECCCCcCHHHHHHHHhhCC--------------CCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHH
Confidence 346788999999999999999743 111122233444444344444445677889999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.||++|+|+|+++....+.. ..+..+... ++| +++|.||+|+.+...... ++...+.+..+ +
T Consensus 73 ~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~~~~---~~~~~~~~~~~-----~ 143 (194)
T d2bcgy1 73 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRVVEY---DVAKEFADANK-----M 143 (194)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCH---HHHHHHHHHTT-----C
T ss_pred HHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCce-EEEEEeccccccccchhH---HHHhhhhhccC-----c
Confidence 8889999999999999875443332 233333322 445 899999999876222111 22233333333 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||++|. |++++++.|.+.
T Consensus 144 ~~~e~SAk~g~-----------gi~e~f~~l~~~ 166 (194)
T d2bcgy1 144 PFLETSALDST-----------NVEDAFLTMARQ 166 (194)
T ss_dssp CEEECCTTTCT-----------THHHHHHHHHHH
T ss_pred ceEEEecCcCc-----------cHHHHHHHHHHH
Confidence 68999999884 788877777653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.9e-13 Score=136.97 Aligned_cols=153 Identities=21% Similarity=0.186 Sum_probs=99.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe----------eCCeEEEEEecC
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE----------SENKHYAHVDCP 722 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~----------~~~~~i~liDtp 722 (1021)
-+.++|.+++|||||+++|++.... .......+.+.......++ .....+.+||||
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~ 72 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNKFN--------------PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTA 72 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCCC--------------CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHhcCCCC--------------CccCCcccceeeEEEEEEecccccccccccceEEeccccCC
Confidence 4567888999999999999974311 1111112222222222221 112568899999
Q ss_pred ChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 723 GHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 723 G~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
|+++|...+..+++++|++|+|+|+++.. +.+.+..... ...+++++|.||+|+.+..... .++..+
T Consensus 73 G~e~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~---~~e~~~ 146 (186)
T d2f7sa1 73 GQERFRSLTTAFFRDAMGFLLMFDLTSQQ---SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN---ERQARE 146 (186)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEEETTCHH---HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC---HHHHHH
T ss_pred cchhhHHHHHHHHhcCCEEEEEEeccccc---cceeeeeccchhhhhccCCCceEEEEeeeccchhhhcch---HHHHHH
Confidence 99999999999999999999999998733 3333322211 1224488999999987532211 134455
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+.+.++ ++++++||++| +|++++++.|.+.
T Consensus 147 ~~~~~~-----~~~~e~Sak~~-----------~~i~e~f~~l~~~ 176 (186)
T d2f7sa1 147 LADKYG-----IPYFETSAATG-----------QNVEKAVETLLDL 176 (186)
T ss_dssp HHHHTT-----CCEEEEBTTTT-----------BTHHHHHHHHHHH
T ss_pred HHHHcC-----CEEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 566555 46899999987 3888888887653
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=9.4e-14 Score=138.10 Aligned_cols=156 Identities=17% Similarity=0.087 Sum_probs=100.1
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|..++|||||+++|++..-.. ....+.+ ...............+.+||++|++.|...+..
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~f~~--------------~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~ 69 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQFPE--------------VYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPL 69 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGG
T ss_pred EEEECCCCcCHHHHHHHHHhCCCCC--------------CcCCcee-eeccccccccccceeeeccccCccchhcccchh
Confidence 3567889999999999999743110 0011111 111112222223346789999999999999888
Q ss_pred HhhhCCEEEEEEECCCCCcHH-HHHHH-HHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHhhhcc
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQ-TREHI-LLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIRELLTEY 800 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~q-t~e~l-~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l~~~ 800 (1021)
+++.+|++|+|+|.++....+ ...++ ...... ++| +++|.||+|+.+........ .++...+.+.+
T Consensus 70 ~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 148 (177)
T d1kmqa_ 70 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 148 (177)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCc-eEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHc
Confidence 999999999999998744322 22222 233332 577 89999999997632211111 12334455554
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+. .+++++||++|. |++++++.+.+
T Consensus 149 ~~----~~~~E~SAkt~~-----------gi~e~F~~i~~ 173 (177)
T d1kmqa_ 149 GA----FGYMECSAKTKD-----------GVREVFEMATR 173 (177)
T ss_dssp TC----SEEEECCTTTCT-----------THHHHHHHHHH
T ss_pred CC----cEEEEecCCCCc-----------CHHHHHHHHHH
Confidence 42 579999999884 89999988764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.5e-13 Score=135.87 Aligned_cols=153 Identities=17% Similarity=0.130 Sum_probs=101.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||+++|++..-. .....+.|... ......++. .+.+||++|++.|...
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~--------------~~~~~T~~~~~---~~~~~~~~~~~~l~~~d~~g~~~~~~~ 66 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFR--------------ESYIPTVEDTY---RQVISCDKSICTLQITDTTGSHQFPAM 66 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCC--------------SSCCCCSCEEE---EEEEEETTEEEEEEEEECCSCSSCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------------CccCcceeecc---ccceeeccccceecccccccccccccc
Confidence 4567889999999999999974310 01111112111 122333443 5667999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH-----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ-----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~-----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
+..+++.+|++++|+|+++... .....++..+.. .++| +++|.||+|+....... .++..++.+.++
T Consensus 67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~~v~---~~e~~~~~~~~~--- 139 (171)
T d2erxa1 67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSREVQ---SSEAEALARTWK--- 139 (171)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT---
T ss_pred ccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCc-EEEEeeccccccccccc---HHHHHHHHHHcC---
Confidence 9999999999999999987432 222333333322 3467 89999999986532211 123444555554
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++.+||++|. |++++++.|.+.+
T Consensus 140 --~~~~e~Sak~~~-----------~v~e~f~~l~~~~ 164 (171)
T d2erxa1 140 --CAFMETSAKLNH-----------NVKELFQELLNLE 164 (171)
T ss_dssp --CEEEECBTTTTB-----------SHHHHHHHHHHTC
T ss_pred --CeEEEEcCCCCc-----------CHHHHHHHHHHHH
Confidence 579999999884 8999999988744
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=4.1e-14 Score=142.00 Aligned_cols=118 Identities=18% Similarity=0.151 Sum_probs=77.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec--------ccCcee
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV--------NKFKYM 78 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--------~~~~~~ 78 (1021)
.+-.|+++|+.|+|||||+++|+...- .. . .....+.......+.+.. .+....
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~--~~------~----------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 65 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKF--NP------K----------FITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC--CC------E----------EEEEEEEEEEEEEEEEEC-------CCEEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCC--CC------c----------cCCcccceeeEEEEEEecccccccccccceEE
Confidence 345699999999999999999973211 10 0 000011111111111111 123467
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHH-h----hcCCCEEEEEeCcCCC
Q psy5021 79 INIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQS-Q----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 79 i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~-~----~~~~p~iiviNK~D~~ 142 (1021)
++++||||+.+|...+..+++.+|++|+|+|.++....+....|..- . ....|+++|.||+|+.
T Consensus 66 ~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 134 (186)
T d2f7sa1 66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 134 (186)
T ss_dssp EEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred eccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccch
Confidence 99999999999999999999999999999999875444444444332 1 2346788999999984
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.44 E-value=6.1e-13 Score=131.93 Aligned_cols=114 Identities=16% Similarity=0.099 Sum_probs=76.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+-.+|+++|.+|+|||||+++|....-.... .+.......+... +..+.++|++|
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~---------------------~~~~~~~~~~~~~----~~~~~~~d~~~ 68 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS---------------------PTIGSNVEEIVIN----NTRFLMWDIGG 68 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE---------------------CCSCSSCEEEEET----TEEEEEEECCC
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCccc---------------------cccceeEEEEeec----ceEEEEecccc
Confidence 4467999999999999999999642211000 0111122233344 78999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHH-HHHH----hhcCCCEEEEEeCcCCCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV-WFQS----QKYKVPKMIFVNKMDRIGAN 145 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~-~~~~----~~~~~p~iiviNK~D~~~~~ 145 (1021)
+..+.......+..++++++++|.++......... +... ...+.|+++++||+|++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (177)
T d1zj6a1 69 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 132 (177)
T ss_dssp ----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC
T ss_pred ccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC
Confidence 99998899999999999999999987544333222 2222 23578999999999987654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.9e-14 Score=142.23 Aligned_cols=154 Identities=15% Similarity=0.030 Sum_probs=100.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|.+++|||||+++|++..- ......+.|................+.+|||||+..|...+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~f--------------~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 70 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGEF--------------EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD 70 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-------------------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGG
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC--------------Ccccccceeccccccccccccccccccccccccccccceecc
Confidence 456788999999999999987431 111122233333322222223346788999999999988888
Q ss_pred HHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 733 TGAAQMDGAILVCSAVDGPM-PQTREHILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
.+++.+|++++|+|+++... ....+++..... .++| +++|.||+|+...... .+...+.+.. ++++
T Consensus 71 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~-----~~~~~~~~~~-----~~~~ 139 (170)
T d1i2ma_ 71 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKVK-----AKSIVFHRKK-----NLQY 139 (170)
T ss_dssp GGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCC-EEEEEECCCCSCSCCT-----TTSHHHHSSC-----SSEE
T ss_pred hhcccccchhhccccccccccchhHHHHHHHhhccCCCc-eeeecchhhhhhhhhh-----hHHHHHHHHc-----CCEE
Confidence 88999999999999988543 333444443332 3677 9999999998763211 1112233333 4689
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++||++|. |++++++.|.+.+
T Consensus 140 ~e~Sak~~~-----------~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 140 YDISAKSNY-----------NFEKPFLWLARKL 161 (170)
T ss_dssp EEEBTTTTB-----------TTTHHHHHHHHHH
T ss_pred EEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 999999884 7788887776544
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.43 E-value=2.3e-13 Score=134.03 Aligned_cols=154 Identities=17% Similarity=0.122 Sum_probs=98.4
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
-+.++|..++|||||++++++..- ....+.+.|.... ....++.....+.+||++|++++.....
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f--------------~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~ 70 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEF--------------VEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRD 70 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC--------------CSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC--------------CcccCCccccccc-cccccccccccccccccccccchhhhhh
Confidence 456788899999999999987431 1111222233221 1122222334667899999999988888
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTR-EHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..++.+|++++|+|.++....+.. .++..+.. .++| +++|.||+|+.+..... .++..++.+.++ +
T Consensus 71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiivgnK~Dl~~~~~v~---~~~~~~~~~~~~-----~ 141 (168)
T d1u8za_ 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQVS---VEEAKNRADQWN-----V 141 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT-----C
T ss_pred hcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCc-EEEEecccccccccccc---HHHHHHHHHHcC-----C
Confidence 889999999999999874443332 33333332 2667 88999999986522111 134445555554 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||++|. |++++++.|.+.
T Consensus 142 ~~~e~Sak~g~-----------gv~e~f~~l~~~ 164 (168)
T d1u8za_ 142 NYVETSAKTRA-----------NVDKVFFDLMRE 164 (168)
T ss_dssp EEEECCTTTCT-----------THHHHHHHHHHH
T ss_pred eEEEEcCCCCc-----------CHHHHHHHHHHH
Confidence 78999999884 888888877653
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=6.6e-14 Score=138.95 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=91.4
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEE-EeeCCeEEEEEecCChhhhHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE-YESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~-~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
+.++|.+++|||||+++|++.... .......+.+....... .......+.+|||||++++...+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 70 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDKYS--------------QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGV 70 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCC--------------TTC---CCCSCEEEEECCSSSCCEEEEEECCC----------
T ss_pred EEEECCCCcCHHHHHHHHHcCCCC--------------CccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHH
Confidence 567888999999999999874311 11112222222211111 122235678999999999999998
Q ss_pred HHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 733 TGAAQMDGAILVCSAVDGPM-PQTREHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+++.+|++++|+|+++... .....++..+.. .++| +++|+||+|+.+...... .++.+++.+.++
T Consensus 71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~v~--~~~~~~~~~~~~--- 144 (175)
T d1ky3a_ 71 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDAEESKKIVS--EKSAQELAKSLG--- 144 (175)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTSCGGGCCSC--HHHHHHHHHHTT---
T ss_pred HHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCc-EEEEecccchhhhhcchh--HHHHHHHHHHcC---
Confidence 89999999999999987543 233334433332 2567 899999999875321111 133444555554
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+++++||++|. |++++++.|.+
T Consensus 145 -~~~~~e~SA~~g~-----------gv~e~f~~l~~ 168 (175)
T d1ky3a_ 145 -DIPLFLTSAKNAI-----------NVDTAFEEIAR 168 (175)
T ss_dssp -SCCEEEEBTTTTB-----------SHHHHHHHHHH
T ss_pred -CCeEEEEeCCCCc-----------CHHHHHHHHHH
Confidence 2578999999884 88888887764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=8e-13 Score=129.86 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=79.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..++|||||+++++...-. . ++ -.|+.... ......++....+.+||++|+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~f~--~-----------~~-------~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~ 63 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGIFV--E-----------KY-------DPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCC--C-----------SC-------CCCSEEEE-EEEEESSSCEEEEEEEEECSSCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--C-----------cc-------CCcccccc-ceeEEeeeeEEEeccccccCccc
Confidence 5899999999999999999743210 0 00 01222111 11223345578899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh----hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~----~~~~p~iiviNK~D~~ 142 (1021)
|......+++.+|++|+|+|.++....+....| ..+. ..++|+++|.||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~ 121 (167)
T d1c1ya_ 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred ccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcc
Confidence 999999999999999999999986444443333 3332 3468999999999985
|
| >d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Elongation factor/aminomethyltransferase common domain superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain domain: Elongation factor Tu (EF-Tu) species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=1.5e-13 Score=117.61 Aligned_cols=77 Identities=66% Similarity=1.181 Sum_probs=73.4
Q ss_pred eeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 945 ~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
++|+|++++|.++.|+..+|+..||+|++||.+.++++.+.+....+.+.|||.+.+.|++.+|+++++|+||.|||
T Consensus 2 ~~F~A~vyiL~~~EGGR~tp~~~~Y~pq~~~~t~d~~~~i~~~~~~~~v~PGd~~~v~l~l~~p~~le~g~rF~iRE 78 (93)
T d2c78a2 2 TKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIRE 78 (93)
T ss_dssp EEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEECCTTCCCBCTTCEEEEEEEEEEEEEECTTCEEEEEE
T ss_pred cEEEEEEEEEeccccCceEEEeecchhhhhccccccceEEEecCCceEEcccceEEEEEEEcccEEEcCCCEEEEEE
Confidence 57999999999998888999999999999999999998888877889999999999999999999999999999997
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.43 E-value=1.9e-13 Score=134.20 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=104.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH-
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN- 730 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~- 730 (1021)
+-+.++|..++|||||+++|++.. .........+.+.......+......+.+||++|+..+...
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCAGR--------------FPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM 68 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS--------------CCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--------------CCCccCcccccccceeeeeeeccceEEEEEeccCchhhcccc
Confidence 346688999999999999999743 11112233344444444445555567889999998887654
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++++|++|+|+|.++....+ ..+++..+... ++| ++||.||+|+.+..+. ..++..++.+.++
T Consensus 69 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-i~lvgnK~Dl~~~~~v---~~~~~~~~~~~~~---- 140 (165)
T d1z06a1 69 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQV---PTDLAQKFADTHS---- 140 (165)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT----
T ss_pred ceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCe-EEEEeccccchhccch---hHHHHHHHHHHCC----
Confidence 556789999999999998854322 23444444332 566 9999999998753221 1234455666655
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhh
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVL 838 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l 838 (1021)
++++.+||+++.++ .+++++++.|
T Consensus 141 -~~~~e~SAkt~~~~--------~~V~e~F~~l 164 (165)
T d1z06a1 141 -MPLFETSAKNPNDN--------DHVEAIFMTL 164 (165)
T ss_dssp -CCEEECCSSSGGGG--------SCHHHHHHHH
T ss_pred -CEEEEEecccCCcC--------cCHHHHHHHh
Confidence 46899999987533 4888888876
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=4e-13 Score=133.09 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=80.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.+-.|+++|..++|||||+++|+...-. . +.. .|+........+..++..+.+.++||+|
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~--~----------------~~~--~t~~~~~~~~~~~~~~~~~~~~i~d~~g 64 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFD--T----------------QLF--HTIGVEFLNKDLEVDGHFVTMQIWDTAG 64 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC--C----------------------CCSEEEEEEEEEETTEEEEEEEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC--C----------------ccc--cceeeeeeeeeeeecCceeeEeeecccC
Confidence 4567999999999999999999753211 0 001 1222222222333344567889999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHh-------hcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQ-------KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~-------~~~~p~iiviNK~D~~ 142 (1021)
..++.......+..+|++++++|.+.....+....|. ... ..++|+++|.||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~ 128 (174)
T d1wmsa_ 65 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 128 (174)
T ss_dssp CGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred cceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh
Confidence 9999999999999999999999998754333333332 221 2468999999999984
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=1.1e-13 Score=136.01 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=99.6
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|.+++|||||+++|++.. ....+....|.+.....+.++.....+.+|||||+++|...+..
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~--------------~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~ 70 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK--------------FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTA 70 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC--------------CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHH
T ss_pred EEEECCCCcCHHHHHHHHHhCC--------------CCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHH
Confidence 4578889999999999998743 11222233344444344433333456678999999999888888
Q ss_pred HhhhCCEEEEEEECCCCCcHHHHHHHH-HHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQTREHIL-LARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt~e~l~-~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
+++.+|++++|+|.++....+..+.+. ..... ....++++.||.|+....... ++..++.+..+ ++++
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~----~~~~~~~~~~~-----~~~~ 141 (166)
T d1g16a_ 71 YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTA----DQGEALAKELG-----IPFI 141 (166)
T ss_dssp HHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCH----HHHHHHHHHHT-----CCEE
T ss_pred HHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhH----HHHHHHHHhcC-----CeEE
Confidence 899999999999999854433333322 11221 233478889999986532222 23444444444 5789
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++||++|. |++++++.|.+.
T Consensus 142 ~~Sa~~~~-----------~v~e~f~~l~~~ 161 (166)
T d1g16a_ 142 ESSAKNDD-----------NVNEIFFTLAKL 161 (166)
T ss_dssp ECBTTTTB-----------SHHHHHHHHHHH
T ss_pred EECCCCCC-----------CHHHHHHHHHHH
Confidence 99999883 888888887653
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.5e-13 Score=134.43 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=103.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+-+.++|..++|||||+++|++...... .. ..+.+.....+..++ ..+.+||++|+++|
T Consensus 5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~--------------~~---~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 67 (173)
T d2fn4a1 5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSD--------------YD---PTIEDSYTKICSVDGIPARLDILDTAGQEEF 67 (173)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSS--------------CC---TTCCEEEEEEEEETTEEEEEEEEECCCTTTT
T ss_pred CeEEEEEECCCCcCHHHHHHHHHhCCCCcc--------------cc---cccccceeeEeccCCeeeeeecccccccccc
Confidence 345577889999999999999987431100 00 111222223344444 45667999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
......+++.+|++|+|+|.++...... .+++..+.. .++| +|+|.||+|+...... ..++...+.+..+
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilvgnK~Dl~~~~~~---~~~~~~~~~~~~~- 142 (173)
T d2fn4a1 68 GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQRQV---PRSEASAFGASHH- 142 (173)
T ss_dssp SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT-
T ss_pred ccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCc-eEEEEEeechhhcccc---chhhhhHHHHhcC-
Confidence 8888889999999999999987543333 233333322 2567 8999999998652211 1133445555544
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++.+||++|. |++++++.|.+.+
T Consensus 143 ----~~~~e~Sak~g~-----------gv~e~f~~l~~~i 167 (173)
T d2fn4a1 143 ----VAYFEASAKLRL-----------NVDEAFEQLVRAV 167 (173)
T ss_dssp ----CEEEECBTTTTB-----------SHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCCc-----------CHHHHHHHHHHHH
Confidence 578999999884 8899988887643
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.9e-13 Score=135.29 Aligned_cols=115 Identities=15% Similarity=0.073 Sum_probs=78.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+-+|+++|..|+|||||+++++...-.. +...+.+.........+ .+....+.++|++|+
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~~i~d~~g~ 62 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQP------------------VHDLTIGVEFGARMVNI--DGKQIKLQIWDTAGQ 62 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----------------------CCSSEEEEEEEE--TTEEEEEEEECCTTG
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCC------------------Ccccceeeccceeeeee--eeeEEEEEeecccCc
Confidence 4579999999999999999997532111 01111222211112222 233578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHHh---hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~~---~~~~p~iiviNK~D~~ 142 (1021)
..|...+...++.+|++|+|+|.++.... .....|..+. ..++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 121 (173)
T d2a5ja1 63 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121 (173)
T ss_dssp GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred cchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchh
Confidence 99999999999999999999999874322 2233444443 3578999999999974
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=9.1e-14 Score=136.80 Aligned_cols=156 Identities=19% Similarity=0.107 Sum_probs=97.6
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||+++|++.. +.....+..+................+.+||++|+.++....
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~--------------f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 69 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENK--------------FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 69 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC--------------CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--------------CCcccccccccchheeeeccCCccceeeeeccCCcceecccc
Confidence 345678899999999999998743 111122223333333333333334667899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++++|++|+|+|.++....+. ..++..... ...| ++++.||+|+....... .++...+.+..+ +
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~-~ilvgnK~Dl~~~~~v~---~~e~~~~a~~~~-----~ 140 (167)
T d1z08a1 70 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHVS---IQEAESYAESVG-----A 140 (167)
T ss_dssp CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT-----C
T ss_pred hhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccc-eeeeccccccccccccc---hHHHHHHHHHcC-----C
Confidence 888999999999999998544333 233332222 2444 88889999987532211 234455666554 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++.+||++|. |++++++.|.+.
T Consensus 141 ~~~e~Sak~~~-----------~v~e~F~~l~~~ 163 (167)
T d1z08a1 141 KHYHTSAKQNK-----------GIEELFLDLCKR 163 (167)
T ss_dssp EEEEEBTTTTB-----------SHHHHHHHHHHH
T ss_pred eEEEEecCCCc-----------CHHHHHHHHHHH
Confidence 78999999883 888888887653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=9e-13 Score=129.75 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=78.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+++|..++|||||+++++...-.-.. ..|+.... ......++..+.+.+|||+|+.
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~~~--------------------~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~ 63 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDY--------------------DPTIEDSY-LKHTEIDNQWAILDVLDTAGQE 63 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCTTC--------------------CTTCCEEE-EEEEEETTEEEEEEEEECCSCG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccc--------------------Ccceeecc-cccccccccccccccccccccc
Confidence 46899999999999999999753211000 00111111 1111223447889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-----HHHhhcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-----FQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-----~~~~~~~~p~iiviNK~D~~~ 143 (1021)
+|.......++.+|++++|+|.++.-......-| +.....++|++++.||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~ 123 (169)
T d1x1ra1 64 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123 (169)
T ss_dssp GGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred ccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhh
Confidence 9999999999999999999999975433322222 223345799999999999864
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.1e-13 Score=137.38 Aligned_cols=160 Identities=18% Similarity=0.135 Sum_probs=103.0
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
|+++.+.++|..++|||||+++|++..-. .+....+. +.........+ ..+.+||++|+++
T Consensus 1 m~~iKvvllG~~~vGKTSli~r~~~~~f~----------------~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~ 63 (191)
T d2ngra_ 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFP----------------SEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQED 63 (191)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCC----------------SSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred CCceEEEEECCCCcCHHHHHHHHHhCCCC----------------CCcCCcee-eecceeEeeCCceeeeeccccccchh
Confidence 34567788999999999999999974311 11111111 11122223333 4678999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHH-HHHH--cCCCeEEEEEeeccccchhhHHHHH---------HHHH
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQT-REHIL-LARQ--VGVPNIVVFLNKADCVQDKELLDLV---------EMEI 793 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~-~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~ 793 (1021)
|......+++.+|++++|+|.++....+. .+++. .... .++| +++|.||+|+.+.....+.. .++.
T Consensus 64 ~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~-i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 142 (191)
T d2ngra_ 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETA 142 (191)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred hhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCc-eEEEeccccccccchhhhhhhhcccccccHHHH
Confidence 98888888999999999999997443222 22232 2222 2567 89999999997633222211 1233
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.++.+.++ .++++.+||++|. |++++++.+...
T Consensus 143 ~~~~~~~~----~~~~~e~SAk~~~-----------~V~e~f~~l~~~ 175 (191)
T d2ngra_ 143 EKLARDLK----AVKYVECSALTQK-----------GLKNVFDEAILA 175 (191)
T ss_dssp HHHHHHTT----CSCEEECCTTTCT-----------THHHHHHHHHHH
T ss_pred HHHHHHcC----CCeEEEEeCCCCc-----------CHHHHHHHHHHH
Confidence 34444433 2578999999873 888888877653
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.5e-13 Score=136.51 Aligned_cols=156 Identities=15% Similarity=0.034 Sum_probs=103.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee--CCeEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES--ENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~--~~~~i~liDtpG~~~~~ 728 (1021)
.+-+.++|..++|||||+++|++.. ...+.....+.......+.. ....+.+|||||++++.
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDT----------------FDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR 70 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC----------------CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCC----------------CCCccccceeecceeEEEEEeccccEEEEEECCCchhhH
Confidence 3457788999999999999998743 11122222333333333333 34568899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..++..+|++++|+|.++.... ....++..+... ..+.++++.||.|....... ..+..++.+..+
T Consensus 71 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~----~~~~~~~~~~~~--- 143 (177)
T d1x3sa1 71 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD----RNEGLKFARKHS--- 143 (177)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSC----HHHHHHHHHHTT---
T ss_pred HHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccccccc----HHHHHHHHHHCC---
Confidence 8888899999999999998874332 233344433332 22348899999997652211 123444555554
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++.+||++|. |++++++.|.+.+
T Consensus 144 --~~~~e~Sa~tg~-----------gv~e~f~~l~~~l 168 (177)
T d1x3sa1 144 --MLFIEASAKTCD-----------GVQCAFEELVEKI 168 (177)
T ss_dssp --CEEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 579999999883 8888888776543
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.2e-12 Score=131.76 Aligned_cols=114 Identities=14% Similarity=0.115 Sum_probs=79.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+++|..|+|||||+++|+...-. . ++ ..|+.... ......++..+.+.+|||||+.
T Consensus 4 iKvvllG~~~vGKTSli~r~~~~~f~--~-----------~~-------~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~ 62 (191)
T d2ngra_ 4 IKCVVVGDGAVGKTCLLISYTTNKFP--S-----------EY-------VPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC--S-----------SC-------CCCSEEEE-EEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC--C-----------Cc-------CCceeeec-ceeEeeCCceeeeeccccccch
Confidence 35999999999999999999742210 0 00 11222211 1112223446789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHH---hhcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQS---QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~---~~~~~p~iiviNK~D~~~ 143 (1021)
+|......+++.+|++++|+|.++....+.. ..|... ...+.|++++.||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~ 121 (191)
T d2ngra_ 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121 (191)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGG
T ss_pred hhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccc
Confidence 9999999999999999999999976443333 223322 234799999999999863
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=1.2e-12 Score=130.02 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=103.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
.+++++|++|+|||||+|+|++....+..... +.+..............+.++|+||........
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~---------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKA---------------QTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRA 70 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCS---------------SCCSSCEEEEEEETTEEEEEESSSSCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeccCC---------------CceEEEEEeeeecCCceeEeecCCCceecchhh
Confidence 45789999999999999999986544333221 122222233444566777889999854432222
Q ss_pred HHHh---------hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 732 ITGA---------AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 732 ~~~~---------~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
.... ..+|+++++.|+.. ...+..+....+.....| .++++||+|....... +..........+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~l~~~~~~-~i~v~~k~d~~~~~~~---~~~~~~~~~~~~~~ 145 (179)
T d1egaa1 71 INRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAP-VILAVNKVDNVQEKAD---LLPHLQFLASQMNF 145 (179)
T ss_dssp HHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSC-EEEEEESTTTCCCHHH---HHHHHHHHHTTSCC
T ss_pred hhhhhhhccccchhhcceeEEEEecCc-cchhHHHHHHHhhhccCc-eeeeeeeeeccchhhh---hhhHhhhhhhhcCC
Confidence 1111 34688888888764 445555555556666677 8889999998874332 22334444444543
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
.+++++||++| +|+++|+++|.+.+|.
T Consensus 146 ----~~~~~vSA~~g-----------~gi~~L~~~i~~~lpe 172 (179)
T d1egaa1 146 ----LDIVPISAETG-----------LNVDTIAAIVRKHLPE 172 (179)
T ss_dssp ----SEEEECCTTTT-----------TTHHHHHHHHHTTCCB
T ss_pred ----CCEEEEeCcCC-----------CCHHHHHHHHHHhCCC
Confidence 57999999987 4899999999998864
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.9e-13 Score=134.32 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=103.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--CeEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--NKHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--~~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++..-. .+....+....... +... ...+.+||++|++.+
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~----------------~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~ 64 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFV----------------DEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEY 64 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCC----------------CSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCC----------------CccCCccceeeccc-eeeeceeeeeeeeeccCcccc
Confidence 3455778899999999999999974311 11111122222211 2223 345788999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
.......++.+|++++|+|.++....+ ..+++..+.. .++| +|+|.||+|+...... .+++.++.+..+
T Consensus 65 ~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~----~~~~~~~~~~~~- 138 (166)
T d1ctqa_ 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKCDLAARTVE----SRQAQDLARSYG- 138 (166)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCC-EEEEEECTTCSCCCSC----HHHHHHHHHHHT-
T ss_pred ccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCe-EEEEeccccccccccc----HHHHHHHHHHhC-
Confidence 999889999999999999998744322 2333333333 2467 9999999998652211 133445555554
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++.+||++| +|++++++.|.+.+
T Consensus 139 ----~~~~e~Sak~g-----------~gi~e~f~~i~~~i 163 (166)
T d1ctqa_ 139 ----IPYIETSAKTR-----------QGVEDAFYTLVREI 163 (166)
T ss_dssp ----CCEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred ----CeEEEEcCCCC-----------cCHHHHHHHHHHHH
Confidence 46899999988 48999988886533
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=9.6e-13 Score=131.39 Aligned_cols=115 Identities=16% Similarity=0.112 Sum_probs=78.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
...|+++|..|+|||||+++|+...-.-. +. .|+... .......++..+.+.+||++|+
T Consensus 5 ~iKivviG~~~vGKTsli~~~~~~~f~~~-------------~~-------~ti~~~-~~~~~~~~~~~~~~~~~d~~g~ 63 (183)
T d1mh1a_ 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGE-------------YI-------PTVFDN-YSANVMVDGKPVNLGLWDTAGQ 63 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSS-------------CC-------CCSCCE-EEEEEEETTEEEEEEEECCCCS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCcc-------------cc-------cceeec-eeeeeeccCcceEEEeeccccc
Confidence 34699999999999999999975321100 00 011111 1111222344788999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHH---hhcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQS---QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~---~~~~~p~iiviNK~D~~~ 143 (1021)
..|......+++.+|++++|+|.++....+.. ..|... ...++|+++|.||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~ 123 (183)
T d1mh1a_ 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (183)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred ccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchh
Confidence 99999999999999999999999875443332 223222 234689999999999753
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.1e-13 Score=138.73 Aligned_cols=157 Identities=18% Similarity=0.086 Sum_probs=101.5
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|..++|||||+++|++..-. .....+.+ +.....+...+ ..+.+|||+|++.|..
T Consensus 10 ~Ki~lvG~~~vGKTsLi~r~~~~~f~--------------~~~~~Ti~---~~~~~~~~~~~~~~~l~i~D~~g~e~~~~ 72 (185)
T d2atxa1 10 LKCVVVGDGAVGKTCLLMSYANDAFP--------------EEYVPTVF---DHYAVSVTVGGKQYLLGLYDTAGQEDYDR 72 (185)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------------CSCCCSSC---CCEEEEEESSSCEEEEEEECCCCSSSSTT
T ss_pred EEEEEECCCCCCHHHHHHHHhhCCCC--------------CcCCCcee---eeeeEEEeeCCceEEeecccccccchhhh
Confidence 45678899999999999999874311 00011111 12222233333 4567999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHH-HHH-HHHHHHHc--CCCeEEEEEeeccccchhhHHHH---------HHHHHHHh
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQ-TRE-HILLARQV--GVPNIVVFLNKADCVQDKELLDL---------VEMEIREL 796 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~q-t~e-~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~---------~~~~~~~~ 796 (1021)
.+..+++.+|++++|+|+++....+ ... +....+.. ++| +++|.||+|+.++...... ..++..++
T Consensus 73 ~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~-~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~ 151 (185)
T d2atxa1 73 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL 151 (185)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred hhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCC-eeEeeeccccccchhhhhhhhhcccccccHHHHHHH
Confidence 8888899999999999998744322 222 22333333 567 8899999999863322111 11234445
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+.++. ++++++||++|. |++++++.+.+.
T Consensus 152 a~~~~~----~~~~E~SAk~~~-----------gv~e~F~~li~~ 181 (185)
T d2atxa1 152 AKEIGA----CCYVECSALTQK-----------GLKTVFDEAIIA 181 (185)
T ss_dssp HHHHTC----SCEEECCTTTCT-----------THHHHHHHHHHH
T ss_pred HHHcCC----CEEEEecCCCCc-----------CHHHHHHHHHHH
Confidence 555542 578999999884 888888877643
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=1e-12 Score=128.11 Aligned_cols=110 Identities=19% Similarity=0.151 Sum_probs=80.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|.+|+|||||+++|....-. .. +.|+........+. +..+.++|++|+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~--~~-------------------~~t~~~~~~~~~~~----~~~~~~~~~~~~~~ 56 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA--TL-------------------QPTWHPTSEELAIG----NIKFTTFDLGGHIQ 56 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--CC-------------------CCCCSCEEEEECCT----TCCEEEEECCCSGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--ee-------------------eceeeEeEEEeccC----CeeEEEEeeccchh
Confidence 5899999999999999999753221 10 11333333333444 77899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HH----hhcCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QS----QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~----~~~~~p~iiviNK~D~~~~ 144 (1021)
+.......+..++++++++|.++.........|. .. ...+.|++++.||+|++..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~ 116 (166)
T d2qtvb1 57 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116 (166)
T ss_dssp GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC
T ss_pred hhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc
Confidence 9999999999999999999998865544433332 22 2357899999999999764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.5e-13 Score=135.66 Aligned_cols=155 Identities=13% Similarity=0.127 Sum_probs=94.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|..++|||||++++++...... ......|.+. ....+...+ ..+.||||||+++|..
T Consensus 7 fKi~vvG~~~vGKTsli~~~~~~~~~~~-------------~~~~~~~~~~--~~~~~~~~~~~~~l~i~Dt~G~e~~~~ 71 (170)
T d2g6ba1 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAG-------------TFISTVGIDF--RNKVLDVDGVKVKLQMWDTAGQERFRS 71 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCC-------------CCCCCCSCEE--EEEEEEETTEEEEEEEEECCCC-----
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcc-------------cccceeeeee--EEEEEEecCcEEEEEEEECCCchhhHH
Confidence 3467889999999999999987431110 0111123333 333344444 4678999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-c--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-V--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++++|+|.++....+. ..++..... . ..| ++++.||+|+....... .++...+.+..+
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~~k~d~~~~~~v~---~~~~~~~~~~~~---- 143 (170)
T d2g6ba1 72 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERVVK---REDGEKLAKEYG---- 143 (170)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCCSC---HHHHHHHHHHHT----
T ss_pred HHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCce-EEEEEeeechhhccccc---HHHHHHHHHHcC----
Confidence 88888899999999999987443322 233332222 2 344 88899999987532111 123444444444
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++|. |++++++.|.+.
T Consensus 144 -~~~~e~Sak~g~-----------gi~e~f~~l~~~ 167 (170)
T d2g6ba1 144 -LPFMETSAKTGL-----------NVDLAFTAIAKE 167 (170)
T ss_dssp -CCEEECCTTTCT-----------THHHHHHHHHHH
T ss_pred -CEEEEEeCCCCc-----------CHHHHHHHHHHH
Confidence 579999999884 889998888653
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.39 E-value=2.4e-12 Score=126.07 Aligned_cols=113 Identities=17% Similarity=0.050 Sum_probs=81.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+-.+|+|+|.+|+|||||+++|....-... ..|.........++ .+.+.++|+||
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~---------------------~~~~~~~~~~~~~~----~~~~~~~~~~~ 58 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTT---------------------IPTIGFNVETVTYK----NLKFQVWDLGG 58 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC---------------------CCCSSEEEEEEEET----TEEEEEEEECC
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcce---------------------ecccceeeeeeccC----ceEEEEeeccc
Confidence 335699999999999999999975321100 11222333334444 78999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH----hhcCCCEEEEEeCcCCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS----QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~~~ 144 (1021)
+..+...........+++++++|..+.........+ ... .....|++++.||.|+...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~ 121 (169)
T d1upta_ 59 LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 121 (169)
T ss_dssp CGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred cccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccc
Confidence 999998888999999999999999876544443332 222 3346788899999999654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.4e-13 Score=135.90 Aligned_cols=161 Identities=19% Similarity=0.141 Sum_probs=102.4
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++..-. .....+.+.. .............+.+||++|++.|..
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~f~--------------~~~~~ti~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~ 68 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--------------GEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDR 68 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--------------SSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTT
T ss_pred eeEEEEEECCCCCCHHHHHHHHHhCCCC--------------cccccceeec-eeeeeeccCcceEEEeecccccccchh
Confidence 4456778888999999999999974311 0111111211 112222233335667999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHH-HHHHHc--CCCeEEEEEeeccccchhhHHHHHH---------HHHHHh
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHI-LLARQV--GVPNIVVFLNKADCVQDKELLDLVE---------MEIREL 796 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l-~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~---------~~~~~~ 796 (1021)
....+++.+|++++|+|+++....+. ..++ ...... ++| +|+|.||+|+..+....+... .+...+
T Consensus 69 ~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T d1mh1a_ 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 147 (183)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred hhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCc-EEEEeecccchhhhhhhhhhhhccccchhhHHHHHH
Confidence 88888999999999999987443222 2222 222222 567 999999999875332222111 123333
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+.++ .++++.+||++| +|++++++.|.+.
T Consensus 148 a~~~~----~~~~~E~SAk~~-----------~~V~e~F~~l~~~ 177 (183)
T d1mh1a_ 148 AKEIG----AVKYLECSALTQ-----------RGLKTVFDEAIRA 177 (183)
T ss_dssp HHHTT----CSEEEECCTTTC-----------TTHHHHHHHHHHH
T ss_pred HHHcC----CceEEEcCCCCC-----------cCHHHHHHHHHHH
Confidence 44443 368999999988 3889998887653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=3.6e-13 Score=132.69 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=101.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
++-+-.+|..++|||||++++++..- ....+...+... .....++.....+.+||++|++++...
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~--------------~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~ 68 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIF--------------VPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAM 68 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC--------------CTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCC--------------CcccCcceeecc-ccccccccccccccccccccccccccc
Confidence 34556788899999999999987431 111112222111 122223333456779999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
...+++.+|++++|+|.++..... ...++..+.. .++| +|++.||+|+.+..... .++..++.+..+
T Consensus 69 ~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p-~ilvgnK~Dl~~~~~v~---~e~~~~~~~~~~---- 140 (169)
T d1x1ra1 69 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRKVT---RDQGKEMATKYN---- 140 (169)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCCSC---HHHHHHHHHHHT----
T ss_pred hhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCcc-EEEEecccchhhhceee---hhhHHHHHHHcC----
Confidence 888999999999999998754322 2333333322 2567 89999999987632211 134455666655
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++.+||+++. .|++++++.|.+
T Consensus 141 -~~~~e~Sak~~~----------~nV~~~F~~l~~ 164 (169)
T d1x1ra1 141 -IPYIETSAKDPP----------LNVDKTFHDLVR 164 (169)
T ss_dssp -CCEEEEBCSSSC----------BSHHHHHHHHHH
T ss_pred -CEEEEEcCCCCC----------cCHHHHHHHHHH
Confidence 468999998751 278888777754
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.4e-13 Score=132.61 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=102.7
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
||.+-+.++|..++|||||+++++...- ........|... ............+.+||++|+..+.
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f--------------~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~ 65 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIF--------------VEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCC--------------CCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSST
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC--------------CCccCCcccccc-ceeEEeeeeEEEeccccccCccccc
Confidence 3555677889999999999999987431 111111112111 1111223334567899999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH-c---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ-V---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~-~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++|+|+|+++.... ....++..+.. . ++| +|+|.||+|+........ ++...+.+...
T Consensus 66 ~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p-~ilvgnK~Dl~~~~~~~~---~~~~~~~~~~~-- 139 (167)
T d1c1ya_ 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVGK---EQGQNLARQWC-- 139 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCSCH---HHHHHHHHHTT--
T ss_pred ccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCe-EEEEEEecCcccccccch---hHHHHHHHHhC--
Confidence 9988999999999999999875432 23344443332 2 456 899999999875321111 22233333322
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.++++.+||++| +|++++++.|.+
T Consensus 140 --~~~~~e~Sak~g-----------~gv~e~F~~l~~ 163 (167)
T d1c1ya_ 140 --NCAFLESSAKSK-----------INVNEIFYDLVR 163 (167)
T ss_dssp --SCEEEECBTTTT-----------BSHHHHHHHHHH
T ss_pred --CCEEEEEcCCCC-----------cCHHHHHHHHHH
Confidence 368899999988 489998888765
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=8.5e-13 Score=129.82 Aligned_cols=111 Identities=18% Similarity=0.127 Sum_probs=74.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..++|||||+++++...- .. ++. .|+...... ....++..+.+.+|||||...
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f--~~-----------~~~-------pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~ 62 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRF--IW-----------EYD-------PTLESTYRH-QATIDDEVVSMEILDTAGQED 62 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC--CS-----------CCC-------TTCCEEEEE-EEEETTEEEEEEEEECCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-----------ccC-------Cceeccccc-cccccccceEEEEeecccccc
Confidence 489999999999999999975221 00 011 122221111 112234568899999999998
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-H----HhhcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-Q----SQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~----~~~~~~p~iiviNK~D~~ 142 (1021)
|. .....++.+|++++|+|.++........-|. . ....+.|+++|.||+|+.
T Consensus 63 ~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 119 (168)
T d2atva1 63 TI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 119 (168)
T ss_dssp CH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred cc-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhh
Confidence 85 5667889999999999999764443333221 1 223579999999999974
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.6e-13 Score=134.27 Aligned_cols=154 Identities=17% Similarity=0.132 Sum_probs=101.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
-+.++|.+++|||||++++++... ........+.+..............+.+||++|+..|...+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 70 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKRF--------------QPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITR 70 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC--------------CC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCH
T ss_pred EEEEECCCCcCHHHHHHHHhcCCC--------------CCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHH
Confidence 356788999999999999987431 111122222333333333333345778999999999998889
Q ss_pred HHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 733 TGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
.+++.+|++++|+|.++... .....++..+... ++| +++|.||+|+........ ++...+.+..+ ++
T Consensus 71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~---~~~~~~a~~~~-----~~ 141 (173)
T d2a5ja1 71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDVKR---EEGEAFAREHG-----LI 141 (173)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT-----CE
T ss_pred HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCe-EEEEecCCchhhhhhhHH---HHHHHHHHHcC-----CE
Confidence 99999999999999887432 3334445444443 456 899999999764222111 23444444444 57
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++.+||++|. |++++++.|.+
T Consensus 142 ~~e~Sa~tg~-----------~V~e~f~~i~~ 162 (173)
T d2a5ja1 142 FMETSAKTAC-----------NVEEAFINTAK 162 (173)
T ss_dssp EEEECTTTCT-----------THHHHHHHHHH
T ss_pred EEEecCCCCC-----------CHHHHHHHHHH
Confidence 9999999884 78888777755
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=9.2e-13 Score=131.73 Aligned_cols=119 Identities=8% Similarity=0.055 Sum_probs=73.0
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
|.++..+|+++|++|||||||+|+|+........ ...+.|.........+. +......+
T Consensus 12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~----~~~~~~~~ 70 (188)
T d1puia_ 12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLART-----------------SKTPGRTQLINLFEVAD----GKRLVDLP 70 (188)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC------------------------------CCEEEEEEET----TEEEEECC
T ss_pred CCccCCEEEEECCCCCCHHHHHHHHhCCCceEee-----------------cccccceeeccceeccc----ccceeeee
Confidence 6678899999999999999999999532211110 00111111111112222 34444444
Q ss_pred CCCCCCc-----------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 84 TPGHVDF-----------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG~~~f-----------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
+++.... ..........++.++.+.|+..+...+....+......+.+.++++||+|+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~ 141 (188)
T d1puia_ 71 GYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 141 (188)
T ss_dssp CCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred cccccchhhhhhhhhhhhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccC
Confidence 4443211 11222333456778888899999999999998998899999999999999853
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.1e-13 Score=134.13 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=100.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
+.-+.++|..++|||||+++|++..-. .....+.+... ...+..++ ..+.+|||+|.++|.
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~--------------~~~~~t~~~~~---~~~~~~~~~~~~l~i~d~~g~~~~~ 66 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQFV--------------DSYDPTIENTF---TKLITVNGQEYHLQLVDTAGQDEYS 66 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--------------SCCCSSCCEEE---EEEEEETTEEEEEEEEECCCCCTTC
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCC--------------cccCcceeccc---ceEEecCcEEEEeeecccccccccc
Confidence 445778899999999999999864310 11111222211 12233444 456789999999987
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHH-H---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTRE-HILLAR-Q---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e-~l~~~~-~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
.....+++.+|++|+|+|.++....+..+ ++..+. . .++| +++|.||+|+....... .++..++.+.++
T Consensus 67 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~r~v~---~~~~~~~a~~~~-- 140 (167)
T d1xtqa1 67 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVIS---YEEGKALAESWN-- 140 (167)
T ss_dssp CCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT--
T ss_pred cccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccc-eeeeccccccccccchh---HHHHHHHHHHcC--
Confidence 77777889999999999999854433332 222222 2 2567 99999999986522110 123445555554
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++++||++| .|++++++.|..
T Consensus 141 ---~~~~e~Sak~~-----------~~v~~~f~~li~ 163 (167)
T d1xtqa1 141 ---AAFLESSAKEN-----------QTAVDVFRRIIL 163 (167)
T ss_dssp ---CEEEECCTTCH-----------HHHHHHHHHHHH
T ss_pred ---CEEEEEecCCC-----------CCHHHHHHHHHH
Confidence 57899999988 488998887754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=9.3e-13 Score=129.95 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=97.6
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|.+++|||||++++++.... ...+...+ +.....+..++ ..+.+||++|+.+|..
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~--------------~~~~~t~~---~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 68 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQSYFV--------------TDYDPTIE---DSYTKQCVIDDRAARLDILDTAGQEEFGA 68 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC--------------SSCCTTCC---EEEEEEEEETTEEEEEEEEECC----CCH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--------------cccCcccc---cceeeeeeecccccccccccccccccccc
Confidence 45678899999999999999874311 11112222 22222333344 4678999999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHH-H---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLAR-Q---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~-~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
....+++.+|++++|+|.++...... ..++.... . ...| +|||.||+|+....... .++..++.+.++
T Consensus 69 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilvgnK~Dl~~~~~v~---~~~~~~~~~~~~--- 141 (171)
T d2erya1 69 MREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFP-MILIGNKADLDHQRQVT---QEEGQQLARQLK--- 141 (171)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCS-EEEEEECTTCTTSCSSC---HHHHHHHHHHTT---
T ss_pred cccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCC-EEEEEeccchhhhccch---HHHHHHHHHHcC---
Confidence 88889999999999999987433222 22332222 2 2456 88999999986521111 134455555554
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++.+||++|. |++++++.|.+.
T Consensus 142 --~~~~e~Sak~~~-----------~i~e~f~~l~~~ 165 (171)
T d2erya1 142 --VTYMEASAKIRM-----------NVDQAFHELVRV 165 (171)
T ss_dssp --CEEEECBTTTTB-----------SHHHHHHHHHHH
T ss_pred --CEEEEEcCCCCc-----------CHHHHHHHHHHH
Confidence 578999999884 888888888654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=8.2e-13 Score=134.87 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=78.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+|+|++|||||||+|+|+...-. .+.|.......+.+. +..+.++|||||.
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~~~----------------------~~tt~~~~~~~~~~~----~~~~~l~D~~g~~ 57 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDSVR----------------------PTVVSQEPLSAADYD----GSGVTLVDFPGHV 57 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCC----------------------CBCCCSSCEEETTGG----GSSCEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----------------------CeEEecceEEEEEeC----CeEEEEEeccccc
Confidence 47999999999999999999753211 112222222223333 6789999999998
Q ss_pred CcHHH----HHHHhhccCeEEEEEeCCCCCch---------hHHHHHHHHhhcCCCEEEEEeCcCCCCCCH
Q psy5021 89 DFTIE----VERSLRVLDGAVIIICASSGIQP---------QTETVWFQSQKYKVPKMIFVNKMDRIGANY 146 (1021)
Q Consensus 89 ~f~~~----~~~~l~~~D~~ilvvda~~g~~~---------~t~~~~~~~~~~~~p~iiviNK~D~~~~~~ 146 (1021)
.+... ...+...+|.+++++|+...... +....++.+...++|+++|+||+|+.....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 58 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp GGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred chhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 76444 44456677999999999875432 233444556678999999999999987653
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=6.5e-13 Score=131.48 Aligned_cols=155 Identities=14% Similarity=0.038 Sum_probs=101.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||+++|++.. +........+.+..............+.+||++|..++....
T Consensus 7 ~KI~vvG~~~vGKSSli~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 72 (174)
T d1wmsa_ 7 FKVILLGDGGVGKSSLMNRYVTNK--------------FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 72 (174)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC--------------CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--------------CCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhh
Confidence 346688899999999999998743 111222333444333333332223456799999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..++..+|++++++|.++....+. ..++..+.. .++| +++|.||+|+.+.+.. .++..++.+..+
T Consensus 73 ~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilVgnK~Dl~~~~v~----~~~~~~~~~~~~-- 145 (174)
T d1wmsa_ 73 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISERQVS----TEEAQAWCRDNG-- 145 (174)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSCSSC----HHHHHHHHHHTT--
T ss_pred hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCce-EEEeccccchhhccCc----HHHHHHHHHHcC--
Confidence 888999999999999987443222 222322222 2567 9999999998652211 133445555443
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.++++++||++|. |++++++.|.+
T Consensus 146 --~~~~~e~Sak~~~-----------gI~e~f~~l~~ 169 (174)
T d1wmsa_ 146 --DYPYFETSAKDAT-----------NVAAAFEEAVR 169 (174)
T ss_dssp --CCCEEECCTTTCT-----------THHHHHHHHHH
T ss_pred --CCeEEEEcCCCCc-----------CHHHHHHHHHH
Confidence 3578999999883 88888887764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.36 E-value=1.6e-12 Score=126.27 Aligned_cols=153 Identities=20% Similarity=0.100 Sum_probs=101.1
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|.+++|||||+++|++...... +.+..............+.+||+||...+.....
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 62 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVTT-------------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC-------------------CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcc-------------------ccceeeEEEEEeeeeEEEEEecCCCcccchhhhh
Confidence 345788999999999999987431110 1111222334455677899999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHH-HHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEI-RELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 807 (1021)
.++..+|++++++|..+....+. ...+..+.. ...++++++.||+|+.+... .+++..+. ..+++ ...+
T Consensus 63 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~-~~~i~~~~~~~~~~-----~~~~ 136 (160)
T d1r8sa_ 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLR-----HRNW 136 (160)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCS-----SCCE
T ss_pred hhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc-HHHHHHHHHHHHHh-----hCCC
Confidence 99999999999999987443222 222222221 12334889999999875222 12221111 11222 2347
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||++| +|+++++++|.+.
T Consensus 137 ~~~~~SAktg-----------~gi~e~~~~l~~~ 159 (160)
T d1r8sa_ 137 YIQATCATSG-----------DGLYEGLDWLSNQ 159 (160)
T ss_dssp EEEECBTTTT-----------BTHHHHHHHHHHH
T ss_pred EEEEeECCCC-----------CCHHHHHHHHHhc
Confidence 8999999998 4999999998753
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.4e-12 Score=127.21 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=71.9
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.-+|+++|+.++|||||+++++...-.... . |..... .-.+..++..+.+.+|||+|+
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-------~--------------t~~~~~-~~~i~v~~~~~~l~i~Dt~g~ 62 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLE-------K--------------TESEQY-KKEMLVDGQTHLVLIREEAGA 62 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCCCC-------C--------------SSCEEE-EEEEEETTEEEEEEEEECSSC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCcC-------C--------------ccceeE-EEEeecCceEEEEEEeecccc
Confidence 467999999999999999999753221100 0 100000 111222455788999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HH------hhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QS------QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~------~~~~~p~iiviNK~D~~ 142 (1021)
.++. +++.+|++|+|+|.++.-..+....|. ++ ...++|+++|+||.|+.
T Consensus 63 ~~~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d 119 (175)
T d2bmja1 63 PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119 (175)
T ss_dssp CCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred cccc-----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence 8854 688899999999998764444433342 22 13457899999998874
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=4.3e-13 Score=134.15 Aligned_cols=154 Identities=15% Similarity=0.071 Sum_probs=101.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|.+++|||||+++|++..- .....++.|.+..............+.+|||||+..+...+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~f--------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 69 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKKF--------------SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV 69 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC--------------CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC--------------CCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccccc
Confidence 356788899999999999997431 111223334444444444444446778999999999888888
Q ss_pred HHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.++..+|++++|+|.++..... ..+++..+.. .++| +++|+||+|+.+.+...+ +..+++....
T Consensus 70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip-~ilv~nK~Dl~~~~~~~~----~~~~~~~~~~--- 141 (184)
T d1vg8a_ 70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLENRQVATK----RAQAWCYSKN--- 141 (184)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSSCCCSCHH----HHHHHHHHTT---
T ss_pred ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCC-EEEEEEeecccccchhHH----HHHHHHHHhc---
Confidence 8889999999999998633222 2233322222 2567 899999999875322222 2222332221
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.++++++||++|. |+.++++.|.+
T Consensus 142 -~~~~~e~Sak~~~-----------gI~e~f~~l~~ 165 (184)
T d1vg8a_ 142 -NIPYFETSAKEAI-----------NVEQAFQTIAR 165 (184)
T ss_dssp -SCCEEECBTTTTB-----------SHHHHHHHHHH
T ss_pred -CCeEEEEcCCCCc-----------CHHHHHHHHHH
Confidence 3678999999883 88888888755
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=4.8e-13 Score=132.16 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=69.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC--
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG-- 86 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG-- 86 (1021)
-.|+++|..++|||||+++|......... . ..|+........+..++..+.+.+||+|+
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~------------~-------~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 64 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDS------------D-------CEVLGEDTYERTLMVDGESATIILLDMWENK 64 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCC------------C----------CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCcCCccc------------c-------ccceeeecceeeeccCCceeeeeeecccccc
Confidence 46999999999999999999632211110 0 00111111111222234466778888764
Q ss_pred -CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh----cCCCEEEEEeCcCCC
Q psy5021 87 -HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 -~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~----~~~p~iiviNK~D~~ 142 (1021)
+.+| ....+++.+|++|+|+|.++.........| ..+.. .++|+++|.||+|+.
T Consensus 65 g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 124 (172)
T d2g3ya1 65 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 124 (172)
T ss_dssp HHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred ccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEecccccc
Confidence 4554 344568899999999999875443333333 33322 479999999999985
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=6.8e-12 Score=125.24 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=100.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh---
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD--- 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~--- 726 (1021)
....++++|++|+|||||+|+|++........ ..+.|...........+......+.++...
T Consensus 15 ~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (188)
T d1puia_ 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---------------KTPGRTQLINLFEVADGKRLVDLPGYGYAEVPE 79 (188)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC----------------------------CCEEEEEEETTEEEEECCCCC------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCceEeec---------------ccccceeeccceecccccceeeeecccccchhh
Confidence 45779999999999999999999854222111 112223223333333344444444443211
Q ss_pred --------hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 727 --------YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 727 --------~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
+...........+.++.+.|+..+...+..+.+......+.+ +++++||+|+.+..+ .....+.+.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~k~D~~~~~~-~~~~~~~~~~~l~ 157 (188)
T d1puia_ 80 EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA-VLVLLTKADKLASGA-RKAQLNMVREAVL 157 (188)
T ss_dssp CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCHHH-HHHHHHHHHHHHG
T ss_pred hhhhhhhhhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhcccc-ccchhhhhhccCHHH-HHHHHHHHHHHHH
Confidence 122222223455677788888888888888888888888888 888999999987433 3333445555554
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
..+ ...+++++||++| +|+++|++.|.++
T Consensus 158 ~~~---~~~~~i~vSA~~g-----------~Gid~L~~~i~~~ 186 (188)
T d1puia_ 158 AFN---GDVQVETFSSLKK-----------QGVDKLRQKLDTW 186 (188)
T ss_dssp GGC---SCEEEEECBTTTT-----------BSHHHHHHHHHHH
T ss_pred hhC---CCCcEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 433 2468999999988 4999999998764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=3.2e-12 Score=130.24 Aligned_cols=125 Identities=20% Similarity=0.161 Sum_probs=81.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
|||+|+|++|+|||||+++|+...-.... .|+......+.+. +.....+.++||||+.
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~---------------------~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~ 58 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---------------------TSITDSSAIYKVN-NNRGNSLTLIDLPGHE 58 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCBC---------------------CCCSCEEEEEECS-STTCCEEEEEECCCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccc---------------------CCeeEEEEEEEEe-eeeeeeeeeeeccccc
Confidence 79999999999999999999853321111 1222222223332 3346789999999999
Q ss_pred CcHH-HHHHHhhccCeEEEEEeCCCCCchh--HHHHH-HHH-----hhcCCCEEEEEeCcCCCCCC-HHHHHHHHHH
Q psy5021 89 DFTI-EVERSLRVLDGAVIIICASSGIQPQ--TETVW-FQS-----QKYKVPKMIFVNKMDRIGAN-YNNCIIDIKK 155 (1021)
Q Consensus 89 ~f~~-~~~~~l~~~D~~ilvvda~~g~~~~--t~~~~-~~~-----~~~~~p~iiviNK~D~~~~~-~~~~~~~i~~ 155 (1021)
.|.. .+...++.+|++++|+|+++..... ..+.| ..+ ...++|+++|+||+|++.+. .++..+.+.+
T Consensus 59 ~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~ 135 (207)
T d2fh5b1 59 SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK 135 (207)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred cccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHH
Confidence 8864 4566679999999999998753321 11222 222 13467899999999998765 3333344433
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.5e-12 Score=126.39 Aligned_cols=153 Identities=18% Similarity=0.109 Sum_probs=94.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
-+.++|..++|||||++++++..- .....++.|..... ....+.....+.+||++|+..+. .+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f--------------~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~ 67 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRF--------------IWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QRE 67 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC--------------CSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHH
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--------------CCccCCceeccccc-cccccccceEEEEeecccccccc-cch
Confidence 356788899999999999997431 11112222322211 11122222467889999998885 455
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHH-HHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREH-ILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~-l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
.+++.+|++++|+|.++.......+. +.+... .+.| +++|.||+|+.+.... ..++..++.+.++ +
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~r~V---~~~e~~~~a~~~~-----~ 138 (168)
T d2atva1 68 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQV---STEEGEKLATELA-----C 138 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCS---CHHHHHHHHHHHT-----S
T ss_pred hhhcccccceeecccCCccchhhhhhhcccccccccccCcc-eeeeccchhhhhhccC---cHHHHHHHHHHhC-----C
Confidence 67889999999999987443322222 222211 2466 9999999998642111 1134445555554 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++.+||++|. .++++++..|.+
T Consensus 139 ~~~e~Saktg~----------gnV~e~F~~l~~ 161 (168)
T d2atva1 139 AFYECSACTGE----------GNITEIFYELCR 161 (168)
T ss_dssp EEEECCTTTCT----------TCHHHHHHHHHH
T ss_pred eEEEEccccCC----------cCHHHHHHHHHH
Confidence 79999999872 147777777654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.7e-12 Score=128.13 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=94.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEec---CChhhhH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDC---PGHADYI 728 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDt---pG~~~~~ 728 (1021)
+.+.++|..++|||||+++|++....... .-...|.........++.....+.+||+ +|+++|+
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~-------------~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~ 70 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDS-------------DCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL 70 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCC-------------C---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCcCCccc-------------cccceeeecceeeeccCCceeeeeeecccccccccccc
Confidence 34567889999999999999864311110 0011222222222233223344567775 5688774
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
...+++.+|++|+|+|.++...... ..++..+... ++| +++|.||+|+.+..... .++.+.+.+..+
T Consensus 71 --~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~v~---~~~~~~~a~~~~-- 142 (172)
T d2g3ya1 71 --HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRCREVS---VSEGRACAVVFD-- 142 (172)
T ss_dssp --HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT--
T ss_pred --ccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCce-EEEEecccccccccccc---HHHHHHHHHHcC--
Confidence 3456789999999999987433222 2233333322 567 99999999987532211 122334444444
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++.+||++|. |++++++.|.+.+
T Consensus 143 ---~~~~e~Sak~g~-----------~i~~~f~~l~~~i 167 (172)
T d2g3ya1 143 ---CKFIETSAAVQH-----------NVKELFEGIVRQV 167 (172)
T ss_dssp ---CEEEECBTTTTB-----------SHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCCc-----------CHHHHHHHHHHHH
Confidence 579999999884 8899888887543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=3.4e-12 Score=124.97 Aligned_cols=116 Identities=18% Similarity=0.147 Sum_probs=76.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
++-.|+++|..|+|||||+++|+...-.... ..|.........+........+.++|++|
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT--------------------EATIGVDFRERAVDIDGERIKIQLWDTAG 60 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC--------------------CCCCSCCEEEEEEEETTEEEEEEEEECCC
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCcc--------------------CcccccccceeeeeeeccceEEEEEeccC
Confidence 4567999999999999999999743211100 01111111112222334478899999999
Q ss_pred CCCcHHH-HHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHh----hcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIE-VERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~-~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~----~~~~p~iiviNK~D~~ 142 (1021)
...+... ...+++.+|++|+|+|.++.-..+.. ..+..+. ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~ 122 (165)
T d1z06a1 61 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122 (165)
T ss_dssp SHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred chhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccch
Confidence 8776543 56688999999999999875433332 2333332 3478999999999984
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.29 E-value=6.5e-12 Score=124.34 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=101.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+|+|||||+++|.+..... ... +.......+...+..+.++|++|++.+...
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~---------------~~~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 75 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMNEVVH---------------TSP----TIGSNVEEIVINNTRFLMWDIGGQESLRSS 75 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEE---------------EEC----CSCSSCEEEEETTEEEEEEECCC----CGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc---------------ccc----ccceeEEEEeecceEEEEeccccccccccc
Confidence 4567788999999999999999743211 001 111223345566789999999999998888
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHH-HHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREH-ILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~-l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.......++.+++|+|.++......... ...... .+.| +++|+||+|+..... ..+ +.+.+........
T Consensus 76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~----i~~~~~~~~~~~~ 149 (177)
T d1zj6a1 76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VAE----ISQFLKLTSIKDH 149 (177)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCC-HHH----HHHHHTGGGCCSS
T ss_pred hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceE-EEEEEEcccccccCc-HHH----HHHHHHHHhhHhc
Confidence 8888999999999999987554332221 221211 2456 899999999865322 122 2222222222334
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++++++||++| +|+++++++|.+.+
T Consensus 150 ~~~~~~~Sa~tg-----------~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 150 QWHIQACCALTG-----------EGLCQGLEWMMSRL 175 (177)
T ss_dssp CEEEEECBTTTT-----------BTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCC-----------CCHHHHHHHHHHHh
Confidence 678999999988 48999999987644
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=1.2e-11 Score=122.78 Aligned_cols=113 Identities=14% Similarity=0.059 Sum_probs=78.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..++|||||+.+++...- .. + .-.|+... ....+..++..+.+.+|||+|+..
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f--~~-----------~-------~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~ 62 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCF--PE-----------N-------YVPTVFEN-YTASFEIDTQRIELSLWDTSGSPY 62 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC--CS-----------S-------CCCCSEEE-EEEEEECSSCEEEEEEEEECCSGG
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC--CC-----------c-------cCCceeec-ccccccccceEEeecccccccccc
Confidence 589999999999999999974321 00 0 01122211 111222345678999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH---hhcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS---QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~---~~~~~p~iiviNK~D~~~ 143 (1021)
|.......++.+|++|+|+|.++....+. ...|... ...+.|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (179)
T d1m7ba_ 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120 (179)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred ccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccc
Confidence 98888889999999999999987644332 2334332 235799999999999753
|
| >d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=9e-13 Score=119.79 Aligned_cols=70 Identities=29% Similarity=0.491 Sum_probs=63.6
Q ss_pred eeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC--CeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE--NFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 593 EP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
||||.|+|.||++++|.|+++|++|||+|.+++..+ +.+.|+|.+|++++++|.++||++|+|.+.+...
T Consensus 1 EPi~~v~I~~p~e~~G~V~~~l~~rRG~i~~~~~~~~~~~~~i~a~iP~~e~~gf~~~Lrs~T~G~a~~~~~ 72 (117)
T d1n0ua5 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMV 72 (117)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHcCCeEeeeeecCCCceEEEEEECCchhhcCHHHHHHhhCCCCceEEEE
Confidence 899999999999999999999999999999888763 4588999999999999999999999999987643
|
| >d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Elongation factor/aminomethyltransferase common domain superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain domain: Elongation factor eEF-1alpha, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.27 E-value=2.5e-12 Score=113.28 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=65.5
Q ss_pred eeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeec-c------------CCCcccccCCCeEEEEEEEceeee
Q psy5021 944 YNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICK-L------------PENVEMVLPGDNIKLNVTLLSSIA 1010 (1021)
Q Consensus 944 ~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~-~------------~~~~~~l~~g~~~~v~~~~~~pi~ 1010 (1021)
+.+|+|+|.+++|+ .+|++||+|++|+|+++++|++. + .++|++++.|+.|.|+|.+.+|+|
T Consensus 1 c~sF~A~v~vl~hp-----~~I~~Gy~~v~h~ht~~~~~~i~kl~~~~d~~tg~~~~~~P~~l~~g~~a~v~i~~~~pi~ 75 (107)
T d1f60a2 1 CASFNATVIVLNHP-----GQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMC 75 (107)
T ss_dssp CSEEEEEEEECSCS-----CCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESSCCC
T ss_pred CCcEEEEEEEECCC-----CcccCCceEEEEecceeeeeEHhhhhhhhcccCCCEeccCCcccCCCCEEEEEEEeCCCCE
Confidence 36899999999998 58999999999999999997652 1 347999999999999999999999
Q ss_pred cccC------CeEEEeC
Q psy5021 1011 IEIG------LRFAIRE 1021 (1021)
Q Consensus 1011 ~~~~------~rf~lr~ 1021 (1021)
+|.+ +||+|||
T Consensus 76 vE~~~~~p~LGRf~lRd 92 (107)
T d1f60a2 76 VEAFSEYPPLGRFAVRD 92 (107)
T ss_dssp CCCTTTCGGGSEEEEEE
T ss_pred EeeccCCCCceeEEEEE
Confidence 9998 7999996
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.25 E-value=2e-11 Score=121.40 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=76.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+--.|+++|.+|+|||||+++|....- . +...|.......+.+. +..++++|++|
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~--~-------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 66 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRL--G-------------------QHVPTLHPTSEELTIA----GMTFTTFDLGG 66 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------------------------CCCCCSCEEEEET----TEEEEEEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--c-------------------ceecccccceeEEEec----ccccccccccc
Confidence 345699999999999999999942110 0 0011233333445555 77899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHH----hhcCCCEEEEEeCcCCCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQS----QKYKVPKMIFVNKMDRIGAN 145 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~----~~~~~p~iiviNK~D~~~~~ 145 (1021)
+.++........+..+++++++|.++..... ....+... ...++|++++.||.|++.+-
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~ 130 (186)
T d1f6ba_ 67 HIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 130 (186)
T ss_dssp ----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC
T ss_pred hhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC
Confidence 9999888888999999999999998753332 22222222 23579999999999998754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=6.3e-12 Score=124.15 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=92.6
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
+..+.+.++|..++|||||++++++..... .....+.+. ...+..++ ..+.+|||+|+.+
T Consensus 3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~---------------~~~t~~~~~---~~~i~v~~~~~~l~i~Dt~g~~~ 64 (175)
T d2bmja1 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV---------------LEKTESEQY---KKEMLVDGQTHLVLIREEAGAPD 64 (175)
T ss_dssp CCEEEEEEECCTTTTHHHHHHHHHHSCCCC---------------CCCSSCEEE---EEEEEETTEEEEEEEEECSSCCC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCC---------------cCCccceeE---EEEeecCceEEEEEEeecccccc
Confidence 445778899999999999999998753110 001111111 22233344 5578899999987
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc------CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTRE-HILLARQV------GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e-~l~~~~~~------~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
+. +++.+|++|+|+|.++..+.+... +...+... .+| +++|+||.|+.....+ .-...+...+.+.
T Consensus 65 ~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~p-i~lV~~k~d~d~~~~~-~v~~~~~~~~~~~ 137 (175)
T d2bmja1 65 AK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRISASSPR-VVGDARARALCAD 137 (175)
T ss_dssp HH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCE-EEEEEECTTCCSSSCC-CSCHHHHHHHHHT
T ss_pred cc-----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCcc-EEEEeeecCcchhhhc-chhHHHHHHHHHH
Confidence 63 678899999999999854333322 22222221 345 8889998886432111 0001233334333
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
. .+++++++||++|. |+++++..|.+
T Consensus 138 ~----~~~~~~e~SAk~~~-----------~v~~~F~~l~~ 163 (175)
T d2bmja1 138 M----KRCSYYETCATYGL-----------NVDRVFQEVAQ 163 (175)
T ss_dssp S----TTEEEEEEBTTTTB-----------THHHHHHHHHH
T ss_pred h----CCCeEEEeCCCCCc-----------CHHHHHHHHHH
Confidence 2 14689999999884 78888776654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=6.8e-12 Score=124.54 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=97.7
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|..++|||||+++++...-. ..+....+ ........+......+.+||++|++.|......
T Consensus 5 ivliG~~~vGKTsli~r~~~~~f~--------------~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 69 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKDCFP--------------ENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPL 69 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCC--------------SSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGG
T ss_pred EEEECCCCcCHHHHHHHHHhCCCC--------------CccCCcee-ecccccccccceEEeeccccccccccccccccc
Confidence 457888999999999999974310 00111111 111122222233356679999999999887778
Q ss_pred HhhhCCEEEEEEECCCCCcHHH-HHHHHH-HHH--cCCCeEEEEEeeccccchhhHHHH---------HHHHHHHhhhcc
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQT-REHILL-ARQ--VGVPNIVVFLNKADCVQDKELLDL---------VEMEIRELLTEY 800 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt-~e~l~~-~~~--~~ip~iIvviNK~Dl~~~~~~~~~---------~~~~~~~~l~~~ 800 (1021)
+++.+|++++|+|.++....+. .+++.. ... .++| +++|.||+|+......... ..++...+.+..
T Consensus 70 ~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~-iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~ 148 (179)
T d1m7ba_ 70 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 148 (179)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcce-EEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHh
Confidence 8899999999999987543222 233322 222 2556 9999999998752211111 012344455544
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+. .+++.+||++|. .+++++++.+..
T Consensus 149 ~~----~~y~E~SAk~~~----------n~i~~~F~~~~~ 174 (179)
T d1m7ba_ 149 GA----ATYIECSALQSE----------NSVRDIFHVATL 174 (179)
T ss_dssp TC----SEEEECBTTTBH----------HHHHHHHHHHHH
T ss_pred CC----CeEEEEeCCCCC----------cCHHHHHHHHHH
Confidence 42 578999999873 147888887654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.23 E-value=2.7e-12 Score=130.93 Aligned_cols=109 Identities=21% Similarity=0.258 Sum_probs=78.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
.|+.++|++|+|||||+|+|++... ..++|.+.....+...+..+.+||||||.++...+
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~~--------------------~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 63 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDSV--------------------RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKL 63 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSC--------------------CCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--------------------CCeEEecceEEEEEeCCeEEEEEecccccchhhHH
Confidence 3778999999999999999997431 12345555566677788889999999998764444
Q ss_pred HH----HhhhCCEEEEEEECCCCCc--HHHHHHH-------HHHHHcCCCeEEEEEeeccccc
Q psy5021 732 IT----GAAQMDGAILVCSAVDGPM--PQTREHI-------LLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 732 ~~----~~~~aD~ailVvDa~~g~~--~qt~e~l-------~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
.. ++..+|.+++++|+..... ..+.+++ ..+...++| +++|+||+|+.+
T Consensus 64 ~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p-iiiv~NK~D~~~ 125 (209)
T d1nrjb_ 64 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFT 125 (209)
T ss_dssp HHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTT
T ss_pred HHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCC-eEEEEEeecccc
Confidence 33 4456799999999886542 3333333 233335788 899999999875
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.23 E-value=1.4e-11 Score=120.45 Aligned_cols=157 Identities=17% Similarity=0.073 Sum_probs=106.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|++.... +...|.......+...+..+.++|.+|+..+...
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGEVV-------------------TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPY 65 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-------------------CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-------------------ceecccceeeeeeccCceEEEEeecccccccccc
Confidence 345778899999999999999874311 0112333444556677889999999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHH-HHHH---HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHI-LLAR---QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l-~~~~---~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
.......++++++++|..+.......... .... ....++++++.||+|+...... ..+..++.. ......+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~-~~i~~~~~~----~~~~~~~ 140 (169)
T d1upta_ 66 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS-SEMANSLGL----PALKDRK 140 (169)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHHTG----GGCTTSC
T ss_pred chhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH-HHHHHHHHH----HHHhcCC
Confidence 88888999999999999875554443322 2221 2234458899999999763221 122222211 1112235
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| +|++++++.|.+.+
T Consensus 141 ~~~~~~SA~~g-----------~gv~e~~~~l~~~l 165 (169)
T d1upta_ 141 WQIFKTSATKG-----------TGLDEAMEWLVETL 165 (169)
T ss_dssp EEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 79999999988 48999999987654
|
| >d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, C-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Elongation factor/aminomethyltransferase common domain superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain domain: Elongation factor eEF-1alpha, C-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.19 E-value=1.1e-11 Score=110.62 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=64.8
Q ss_pred eeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc-------------CCCcccccCCCeEEEEEEEceeee
Q psy5021 944 YNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-------------PENVEMVLPGDNIKLNVTLLSSIA 1010 (1021)
Q Consensus 944 ~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~g~~~~v~~~~~~pi~ 1010 (1021)
+.+|+|+|.||+|+ ++|++||++++|+|+++++|++.- ..++++++.||.|.|+|++.+|+|
T Consensus 1 a~~F~A~v~vl~h~-----~~i~~Gy~~~~h~~t~~~~~~i~~i~~k~d~~tg~~~~~~p~~l~~g~~a~v~i~~~~~i~ 75 (107)
T d1jnya2 1 ADEFTARIIVVWHP-----TALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLC 75 (107)
T ss_dssp ESEEEEEEEECCCS-----SCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEE
T ss_pred CCeEEEEEEEEcCC-----CcccCCcEEEEEEehhcceEEeeeeeehhccccCcccccccccccCCceEEEEEEcCCceE
Confidence 35899999999998 589999999999999999987632 236888999999999999999999
Q ss_pred cccC------CeEEEeC
Q psy5021 1011 IEIG------LRFAIRE 1021 (1021)
Q Consensus 1011 ~~~~------~rf~lr~ 1021 (1021)
++++ +||+|||
T Consensus 76 ~e~~~~~~~lGrfilrd 92 (107)
T d1jnya2 76 VEKYNEFPPLGRFAMRD 92 (107)
T ss_dssp CCCTTTSGGGTEEEEEE
T ss_pred EeecccCCCcCCEEEEE
Confidence 9998 6999996
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=2.5e-11 Score=118.04 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=102.1
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|.+|+|||||+|+|++..... .+.|...........+....++|++|+..+......
T Consensus 3 I~liG~~nvGKSSLln~l~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDRLAT-------------------LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 63 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCC-------------------CCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGG
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCe-------------------eeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhh
Confidence 4578899999999999999853110 122333444455667788999999999998888888
Q ss_pred HhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhh---hccccCCC
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELL---TEYDFDGE 805 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l---~~~~~~~~ 805 (1021)
....++.+++++|.++...... ...+..... ...| ++++.||+|+..... ...+.+.+.... ........
T Consensus 64 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~i~~~k~d~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 141 (166)
T d2qtvb1 64 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNAVS-EAELRSALGLLNTTGSQRIEGQR 141 (166)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCC-EEEEEECTTSSSCCC-HHHHHHHHTCSSCCC---CCSSC
T ss_pred hhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCce-EEEEeccccccccCC-HHHHHHHhhhhhhhHHHhhcccC
Confidence 8899999999999987544332 222222222 2456 889999999865211 222222221100 00111223
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.++++++||++| +|+++++++|.+
T Consensus 142 ~~~~~~~SA~tg-----------~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 142 PVEVFMCSVVMR-----------NGYLEAFQWLSQ 165 (166)
T ss_dssp CEEEEEEBTTTT-----------BSHHHHHHHHTT
T ss_pred CCEEEEeeCCCC-----------CCHHHHHHHHhC
Confidence 468999999998 499999999976
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=6.7e-11 Score=120.23 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=72.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEE-eeCCeEEEEEecCChhhhHH-H
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEY-ESENKHYAHVDCPGHADYIK-N 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~-~~~~~~i~liDtpG~~~~~~-~ 730 (1021)
++.++|.+|+|||||+++|++...... .. +++.......+ ...+..+.+||+||++++.. .
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~---------------~~--t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 64 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDT---------------QT--SITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQL 64 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCB---------------CC--CCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc---------------cC--CeeEEEEEEEEeeeeeeeeeeeeccccccccchh
Confidence 567899999999999999997542110 11 22222222232 23456789999999999864 4
Q ss_pred HHHHhhhCCEEEEEEECCCCCcH--HHHHHHH-HHHH----cCCCeEEEEEeeccccc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMP--QTREHIL-LARQ----VGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~--qt~e~l~-~~~~----~~ip~iIvviNK~Dl~~ 781 (1021)
+..++..+|.+++|+|+++.... ...+.+. ++.. .+.++++||+||+|+..
T Consensus 65 ~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~ 122 (207)
T d2fh5b1 65 LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122 (207)
T ss_dssp HHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred hhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence 55667899999999999864321 2222332 2221 13334999999999975
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=7.1e-11 Score=119.19 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=75.6
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.-.|.++|..++|||||+++|-... .+..|+.....++.++ ...+.++||+|+
T Consensus 2 ~iKivllG~~~vGKTsll~r~~f~~-----------------------~~~pTiG~~~~~~~~~----~~~~~~~D~~gq 54 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMRIIH-----------------------GQDPTKGIHEYDFEIK----NVPFKMVDVGGQ 54 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH-----------------------SCCCCSSEEEEEEEET----TEEEEEEEECC-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-----------------------CCCCeeeeEEEEEeee----eeeeeeecccce
Confidence 3468999999999999999993221 1123555556667777 899999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCch-----------hHHHHHHHH----hhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQP-----------QTETVWFQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~-----------~t~~~~~~~----~~~~~p~iiviNK~D~~ 142 (1021)
..+...+..+.+.++++++++|.++.... .....|... ...++|+++++||+|+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 124 (200)
T d1zcba2 55 RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 124 (200)
T ss_dssp ------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred eeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence 99999999999999999999999876321 122233332 24589999999999973
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=6.8e-11 Score=132.06 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=106.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH--
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI-- 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~-- 728 (1021)
.+.++++|.+|+|||||+|+|++........... -..+.|.+..... ..++..+.||||||.....
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~-----------g~~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~~~ 123 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT-----------GVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFP 123 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCC-----------CC----CCCEEEE-CSSCTTEEEEECCCGGGSSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCC-----------CCCCCceeeeeee-ccCCCeEEEEeCCCccccccc
Confidence 3668999999999999999999743211110000 0012344333322 2345578999999965421
Q ss_pred -HHHH--HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccch------------hhHHHHHHHHH
Q psy5021 729 -KNMI--TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQD------------KELLDLVEMEI 793 (1021)
Q Consensus 729 -~~~~--~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~------------~~~~~~~~~~~ 793 (1021)
.... ..+..+|++|+++|. ....+..+.+..+...+.| +++|+||+|.... +...+.+++.+
T Consensus 124 ~~~~~~~~~~~~~d~~l~~~~~--~~~~~d~~l~~~l~~~~k~-~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~ 200 (400)
T d1tq4a_ 124 PDTYLEKMKFYEYDFFIIISAT--RFKKNDIDIAKAISMMKKE-FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 200 (400)
T ss_dssp HHHHHHHTTGGGCSEEEEEESS--CCCHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcceEEEEecCC--CCCHHHHHHHHHHHHcCCC-EEEEEeCcccccchhhhcccccccHHHHHHHHHHHH
Confidence 1111 224678888887764 4677888888889999998 9999999996421 22345555566
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
...++..+.. ..+++.+|+... ..++++.|.+.+.+.+|.
T Consensus 201 ~~~l~~~~~~--~~~vflvS~~~~---------~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 201 VNTFRENGIA--EPPIFLLSNKNV---------CHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp HHHHHHTTCS--SCCEEECCTTCT---------TSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHcCCC--CCCEEEecCCcc---------cccCHHHHHHHHHHHhHH
Confidence 6666666654 346788887632 224788899998887764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=2.7e-10 Score=127.05 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=73.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.-||+|+|.+|+|||||+|+|+....... +...++. .+.|.+.. ...+. ....+.||||||.
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~-------~~~~~g~------~~tT~~~~--~~~~~---~~~~~~l~DtPG~ 117 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEE-------GAAKTGV------VEVTMERH--PYKHP---NIPNVVFWDLPGI 117 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTST-------TSCCCCC----------CCCE--EEECS---SCTTEEEEECCCG
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCC-------ccCCCCC------CCCceeee--eeecc---CCCeEEEEeCCCc
Confidence 46899999999999999999975322111 1111110 01122221 11222 1446889999997
Q ss_pred CCc--HHH---HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCC
Q psy5021 88 VDF--TIE---VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 88 ~~f--~~~---~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~ 141 (1021)
... ..+ ....+..+|.+|+++| .....+...+++.+.+.++|+++|+||+|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 118 GSTNFPPDTYLEKMKFYEYDFFIIISA--TRFKKNDIDIAKAISMMKKEFYFVRTKVDS 174 (400)
T ss_dssp GGSSCCHHHHHHHTTGGGCSEEEEEES--SCCCHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred ccccccHHHHHHHhhhhcceEEEEecC--CCCCHHHHHHHHHHHHcCCCEEEEEeCccc
Confidence 433 222 1223456777777665 557888899999999999999999999996
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.10 E-value=2.1e-11 Score=127.34 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=77.3
Q ss_pred CeEEEEEecCChhhhHHHHHHHhh-----hCCEEEEEEECCCCCcHHHHHHHHHH-----HHcCCCeEEEEEeeccccch
Q psy5021 713 NKHYAHVDCPGHADYIKNMITGAA-----QMDGAILVCSAVDGPMPQTREHILLA-----RQVGVPNIVVFLNKADCVQD 782 (1021)
Q Consensus 713 ~~~i~liDtpG~~~~~~~~~~~~~-----~aD~ailVvDa~~g~~~qt~e~l~~~-----~~~~ip~iIvviNK~Dl~~~ 782 (1021)
...+.++|+|||..+...+..+.. ..+.+++++|+..+..+|+..+..+. ...+.| .++++||+|+...
T Consensus 94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~-~ivvinK~D~~~~ 172 (244)
T d1yrba1 94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGAT-TIPALNKVDLLSE 172 (244)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSC-EEEEECCGGGCCH
T ss_pred ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCC-ceeeeeccccccH
Confidence 456899999999998777666543 35689999999999888887665543 345788 7889999999873
Q ss_pred hhHHHHHHH---HH---HHhh---------------hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 783 KELLDLVEM---EI---RELL---------------TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 783 ~~~~~~~~~---~~---~~~l---------------~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++. +.... .+ ...+ .........++++|+||++| +|+++|++.|.+
T Consensus 173 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~g-----------eGi~~L~~~l~e 239 (244)
T d1yrba1 173 EEK-ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR-----------EGFEDLETLAYE 239 (244)
T ss_dssp HHH-HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC-----------TTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCC-----------CCHHHHHHHHHH
Confidence 221 11110 00 0000 00000112478999999988 489999998865
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=3.3e-10 Score=113.48 Aligned_cols=103 Identities=10% Similarity=0.116 Sum_probs=77.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|.++|..++|||||+++|....- .|+......+.+. ...+.+|||+|+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~-------------------------~t~~~~~~~~~~~----~~~~~i~D~~Gq~~ 54 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHE-------------------------AGTGIVETHFTFK----DLHFKMFDVGGQRS 54 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS-------------------------CCCSEEEEEEEET----TEEEEEEEECCSGG
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC-------------------------CCccEEEEEEEee----eeeeeeeccccccc
Confidence 589999999999999999963211 1122223345555 88999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCc-----------hhHHHHHHHH----hhcCCCEEEEEeCcCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQ-----------PQTETVWFQS----QKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~-----------~~t~~~~~~~----~~~~~p~iiviNK~D~ 141 (1021)
|...+..+++.+|++++|+|.++... ......|... ...+.|+++++||+|+
T Consensus 55 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~ 121 (195)
T d1svsa1 55 ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 121 (195)
T ss_dssp GGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred cccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchh
Confidence 99999999999999999999875421 1223344433 2346899999999996
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.08 E-value=2e-10 Score=114.01 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=100.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+...+.++|.+++|||||+++|++..... . ..|.......+...+..+.++|++|+..+..
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~---------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ---------------H----VPTLHPTSEELTIAGMTFTTFDLGGHIQARR 72 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEETTEEEEEEEECC----CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc---------------e----ecccccceeEEEecccccccccccchhhhhh
Confidence 45678899999999999999999743110 0 1122223334566778899999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc-----
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE----- 799 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~----- 799 (1021)
.+.......+.+++++|.++... .+..+.+..... .++| ++++.||.|+..... ...+.+.+......
T Consensus 73 ~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~-~li~~~K~D~~~~~~-~~~i~~~~~~~~~~~~~~~ 150 (186)
T d1f6ba_ 73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDRPEAIS-EERLREMFGLYGQTTGKGS 150 (186)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTCCC-HHHHHHHHTCTTTCCCSSC
T ss_pred HHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCc-eEEEEeccCccccCC-HHHHHHHHhhcccchhhhh
Confidence 88888899999999999887433 222222222222 2577 889999999865211 12222222111000
Q ss_pred ---cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 800 ---YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 800 ---~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.......++++++||++| +|+++++++|.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~SA~tg-----------~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 151 VSLKELNARPLEVFMCSVLKR-----------QGYGEGFRWMAQYI 185 (186)
T ss_dssp CCTTTCCSCCEEEEECBTTTT-----------BSHHHHHHHHHTTC
T ss_pred hhHHHhhcCCCEEEEEeCCCC-----------CCHHHHHHHHHHhh
Confidence 011122467999999988 49999999998754
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=5e-10 Score=112.64 Aligned_cols=108 Identities=13% Similarity=0.149 Sum_probs=82.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-+|.++|..++|||||+.+|...... + -.|+......+.+. ...+.++||+|+.
T Consensus 3 ~Kiv~lG~~~vGKTsll~r~~~~~~~---------------~-------~pTiG~~~~~~~~~----~~~~~~~d~~g~~ 56 (200)
T d2bcjq2 3 LKLLLLGTGESGKSTFIKQMRIIHGS---------------G-------VPTTGIIEYPFDLQ----SVIFRMVDVGGQR 56 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTSS---------------C-------CCCCSCEEEEEECS----SCEEEEEECCCST
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC---------------C-------CceeeEEEEEEecc----ceeeeeccccccc
Confidence 46899999999999999999643221 0 12454444455555 7899999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCc-----------hhHHHHHHHHh----hcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQ-----------PQTETVWFQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~-----------~~t~~~~~~~~----~~~~p~iiviNK~D~~ 142 (1021)
.|...+...++.++++++++|.++... ......|..+. ..+.|++++.||.|+.
T Consensus 57 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~ 125 (200)
T d2bcjq2 57 SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 125 (200)
T ss_dssp TGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHH
T ss_pred cccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhh
Confidence 999999999999999999999986421 22345565443 2578999999999974
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=1e-09 Score=110.34 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=94.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+-+.++|..++|||||+++|.... .. ..|+......+......+.+||++|++.+...+
T Consensus 3 iKivllG~~~vGKTsll~r~~f~~-----------------~~----~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~ 61 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMRIIH-----------------GQ----DPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRW 61 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH-----------------SC----CCCSSEEEEEEEETTEEEEEEEECC-------C
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-----------------CC----CCeeeeEEEEEeeeeeeeeeecccceeeecccc
Confidence 445678889999999999993211 01 113444556678888999999999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCc--------HHHHHHHHHHHH-------cCCCeEEEEEeeccccchh-------------
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM--------PQTREHILLARQ-------VGVPNIVVFLNKADCVQDK------------- 783 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~--------~qt~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~------------- 783 (1021)
..+.+.++++++++|.++... ....+++.+... .++| +++++||+|+.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~f~~~ 140 (200)
T d1zcba2 62 FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS-IILFLNKTDLLEEKVQVVSIKDYFLEF 140 (200)
T ss_dssp TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE-EEEEEECHHHHHHHTTTCCGGGTCTTC
T ss_pred cccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCce-EEEEeccchhhhhhccccHHHHhCccc
Confidence 999999999999999887542 122233322221 2566 99999999985310
Q ss_pred ----hHHHHHHHHHHHhhhcccc--CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 784 ----ELLDLVEMEIRELLTEYDF--DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 784 ----~~~~~~~~~~~~~l~~~~~--~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
...+...+.+.+..+...- ....+....+||+++ .+++.+++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~-----------~ni~~vf~~v~d 192 (200)
T d1zcba2 141 EGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT-----------ENIRLVFRDVKD 192 (200)
T ss_dssp CSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH-----------HHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCc-----------HHHHHHHHHHHH
Confidence 1112233333333332211 112344566999977 488888877654
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.94 E-value=2e-09 Score=98.21 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=70.7
Q ss_pred CeeEE--EEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCcc-C
Q psy5021 852 PFLMP--IEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKRE-E 928 (1021)
Q Consensus 852 p~~~~--I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~-~ 928 (1021)
|.++. .+.+|+..+. .|+.|+|++|+|++||.+.+.|.+ ..++|+||+.+++++++|.+|++|++++.++... +
T Consensus 4 P~~~~il~~~vFr~~~p-~ivgv~V~sG~ik~G~~l~~~p~~--~~g~VksIq~~~~~v~~A~~G~~Vai~I~g~~~gr~ 80 (128)
T d1g7sa2 4 PASIRLIPKLVFRQSKP-AIGGVEVLTGVIRQGYPLMNDDGE--TVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKT 80 (128)
T ss_dssp CEEEEEEEEEEEECSSS-EEEEEEEEEEEEETTCEEECTTSC--EEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTT
T ss_pred eEEEEEcCCcEecCCCC-eEEEEEEeeeeecCCCEEEECCCC--ceEEEEEEEECCccccEEcCCCEEEEEEcCcccCCC
Confidence 44444 4789986653 567779999999999999998754 4589999999999999999999999999997754 7
Q ss_pred cccceEEeeC
Q psy5021 929 VERGQVLAKI 938 (1021)
Q Consensus 929 i~~G~vl~~~ 938 (1021)
+.+||+|++.
T Consensus 81 i~~gD~L~s~ 90 (128)
T d1g7sa2 81 IHEGDTLYVD 90 (128)
T ss_dssp BCTTCEEEEC
T ss_pred CCCCCEEEEe
Confidence 9999999864
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=1.3e-09 Score=109.02 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=99.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+-...+|..++|||||+++|..... .|+......+......+.+|||+|+++|...
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~-----------------------~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~ 58 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHE-----------------------AGTGIVETHFTFKDLHFKMFDVGGQRSERKK 58 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHS-----------------------CCCSEEEEEEEETTEEEEEEEECCSGGGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC-----------------------CCccEEEEEEEeeeeeeeeeccccccccccc
Confidence 34567788899999999999975321 0222334556778889999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc--------HHHHHHHHHHHH-------cCCCeEEEEEeeccccchh------------
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM--------PQTREHILLARQ-------VGVPNIVVFLNKADCVQDK------------ 783 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~--------~qt~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~------------ 783 (1021)
+..+++.+|++++|+|.++... ....+....... .+.| +++++||+|+....
T Consensus 59 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~-~~lv~Nk~d~~~~~~~~~~~~~~~~~ 137 (195)
T d1svsa1 59 WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS-IILFLNKKDLFEEKIKKSPLTICYPE 137 (195)
T ss_dssp GGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSE-EEEEEECHHHHHHHTTTSCGGGTCTT
T ss_pred hhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCC-EEEEeccchhhhhhccchHHHHHhhh
Confidence 9999999999999999765321 112222222211 2456 89999999974210
Q ss_pred ----hHHHHHHHHHHH-hhhcccc-CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 784 ----ELLDLVEMEIRE-LLTEYDF-DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 784 ----~~~~~~~~~~~~-~l~~~~~-~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.........+.. +...... ....+.++.+||+++ .|++++++.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~-----------~nv~~~F~~v~~ 189 (195)
T d1svsa1 138 YAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT-----------KNVQFVFDAVTD 189 (195)
T ss_dssp CCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH-----------HHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECC-----------HhHHHHHHHHHH
Confidence 001111111211 1111111 123466778999988 488888887754
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.90 E-value=1.6e-09 Score=110.80 Aligned_cols=107 Identities=13% Similarity=0.161 Sum_probs=80.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
...|.++|..|+|||||+.+|..... -.|+......+.++ +..+.++|++|+
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~------------------------~pTiG~~~~~~~~~----~~~~~~~D~~Gq 57 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHV------------------------VLTSGIFETKFQVD----KVNFHMFDVGGQ 57 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHC------------------------CCCCSCEEEEEEET----TEEEEEEECCCS
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCc------------------------CCCCCeEEEEEEEC----cEEEEEEecCcc
Confidence 45789999999999999999953211 11444444456677 889999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCc-----------hhHHHHHHHHh----hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQ-----------PQTETVWFQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~-----------~~t~~~~~~~~----~~~~p~iiviNK~D~~ 142 (1021)
..+...+....+.++++++++|.++... ......|..+. -.++|+++++||+|+.
T Consensus 58 ~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~ 127 (221)
T d1azta2 58 RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127 (221)
T ss_dssp TTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred ceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence 9999999999999999999999985321 22333444332 2469999999999984
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=1.3e-09 Score=109.53 Aligned_cols=159 Identities=12% Similarity=0.143 Sum_probs=103.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+-++|..++|||||++++..... ...+ |+......+......+.+||++|++.+...
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~----------------~~~p----TiG~~~~~~~~~~~~~~~~d~~g~~~~~~~ 61 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHG----------------SGVP----TTGIIEYPFDLQSVIFRMVDVGGQRSERRK 61 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTS----------------SCCC----CCSCEEEEEECSSCEEEEEECCCSTTGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCC----------------CCCc----eeeEEEEEEeccceeeeecccccccccccc
Confidence 34566788899999999999976421 0112 333344556677888999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCC-----------cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhH----------
Q psy5021 731 MITGAAQMDGAILVCSAVDGP-----------MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKEL---------- 785 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~-----------~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~---------- 785 (1021)
+..+++.++.+++++|+++.. .....+.|..+.. .+.| ++++.||.|+......
T Consensus 62 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~-~~~v~NK~Dl~~~~~~~~~~~~~~~~ 140 (200)
T d2bcjq2 62 WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPE 140 (200)
T ss_dssp GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSE-EEEEEECHHHHHHHTTTSCHHHHSTT
T ss_pred ccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCcc-EEEecchhhhhhhcccchHHHHhccc
Confidence 999999999999999987632 1223344433322 2456 8999999998531100
Q ss_pred -------HHHHHHHHHH-hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 786 -------LDLVEMEIRE-LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 786 -------~~~~~~~~~~-~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+.....+.. ++.........+.++.+||++| .++.++++.+.+.
T Consensus 141 ~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~-----------~ni~~vF~~i~~~ 193 (200)
T d2bcjq2 141 YDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT-----------ENIRFVFAAVKDT 193 (200)
T ss_dssp CCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCH-----------HHHHHHHHHHHHH
T ss_pred ccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcC-----------HhHHHHHHHHHHH
Confidence 1111111222 2222222234566788999988 4888888877653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.79 E-value=1.6e-08 Score=105.54 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=76.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.-.||+++|.+|+|||||+|+|+...-.+... ..+.|.........+. +..+++|||||
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~-----------------~~~~T~~~~~~~~~~~----g~~i~viDTPG 89 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-----------------FQSEGPRPVMVSRSRA----GFTLNIIDTPG 89 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-----------------SSCCCSSCEEEEEEET----TEEEEEEECCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCceeecC-----------------CCCcceeEEEEEEEec----cEEEEEEeeec
Confidence 45789999999999999999998654332220 1133444444555666 78999999999
Q ss_pred CCCc-------HHHHHHHh--hccCeEEEEEeCCCC-CchhHHHHHHHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 87 HVDF-------TIEVERSL--RVLDGAVIIICASSG-IQPQTETVWFQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f-------~~~~~~~l--~~~D~~ilvvda~~g-~~~~t~~~~~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
..+- ...+.... ...|++++|++.... ........++.+.. ...++++++||+|...
T Consensus 90 l~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 90 LIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp SEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence 7432 12222222 356888999988764 55555555554432 2357899999999864
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=9.4e-09 Score=88.36 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=75.8
Q ss_pred CCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--
Q psy5021 295 SNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK-- 370 (1021)
Q Consensus 295 ~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-- 370 (1021)
++||++.|..+|..++.|+++.+||.+|++++||.|...+.+.+.+|+.|... ..++++|.|||-+++ .|++
T Consensus 1 dkP~rmpI~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~l~l~~i~~~ 76 (94)
T d1f60a1 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH----HEQLEQGVPGDNVGFNVKNVSVK 76 (94)
T ss_dssp TSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET----TEECSCBCTTCEEEEEESSCCTT
T ss_pred CCCEEEEEEEEEEeCCeeEEEEEeeecccCCCCCEEEECcCCceEEEEEEEEc----CcCcCEecCCCeEEEEEeCccHH
Confidence 57999999999999999999999999999999999999999999999988643 356899999999998 4555
Q ss_pred ccccCCeeccCCcc
Q psy5021 371 ESSTGDTLCSLSEN 384 (1021)
Q Consensus 371 ~~~~gdtl~~~~~~ 384 (1021)
++..|+.||++.++
T Consensus 77 ~i~rG~vl~~~~~~ 90 (94)
T d1f60a1 77 EIRRGNVCGDAKND 90 (94)
T ss_dssp TSCTTCEEEETTSS
T ss_pred hcCCCCEEECCCCC
Confidence 68999999987654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.77 E-value=6.2e-09 Score=106.38 Aligned_cols=107 Identities=17% Similarity=0.263 Sum_probs=77.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
..+-++|..++|||||+++|..... -+ |+......+..++..+.+||++|++.+...+
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~------------------~p----TiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w 64 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHV------------------VL----TSGIFETKFQVDKVNFHMFDVGGQRDERRKW 64 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC------------------CC----CCSCEEEEEEETTEEEEEEECCCSTTTTTGG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCc------------------CC----CCCeEEEEEEECcEEEEEEecCccceeccch
Confidence 4456788899999999999964320 01 3333445567788999999999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCC--------cHHHHHHHHHHHH-------cCCCeEEEEEeeccccc
Q psy5021 732 ITGAAQMDGAILVCSAVDGP--------MPQTREHILLARQ-------VGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~--------~~qt~e~l~~~~~-------~~ip~iIvviNK~Dl~~ 781 (1021)
..+...++++++|+|.++-. .....+.+.+... .++| ++|++||+|+.+
T Consensus 65 ~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~-iil~~NK~Dl~~ 128 (221)
T d1azta2 65 IQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS-VILFLNKQDLLA 128 (221)
T ss_dssp GGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEECHHHHH
T ss_pred hhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCc-EEEEechhhhhh
Confidence 99999999999999987521 1122222222222 2567 999999999864
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.77 E-value=2.1e-08 Score=104.67 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=80.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh---
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD--- 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~--- 726 (1021)
..+++.++|.+|+|||||+|+|++......+ ...+.|.+.....+...+..+.||||||..+
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs---------------~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~ 95 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGERVVSIS---------------PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY 95 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCC---------------SSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCceeec---------------CCCCcceeEEEEEEEeccEEEEEEeeecccCCcc
Confidence 4578999999999999999999985433221 1235566666677778899999999999532
Q ss_pred ----hHHHHHHHh--hhCCEEEEEEECCCC-CcHHHHHHHHHHHH-cC---CCeEEEEEeeccccc
Q psy5021 727 ----YIKNMITGA--AQMDGAILVCSAVDG-PMPQTREHILLARQ-VG---VPNIVVFLNKADCVQ 781 (1021)
Q Consensus 727 ----~~~~~~~~~--~~aD~ailVvDa~~g-~~~qt~e~l~~~~~-~~---ip~iIvviNK~Dl~~ 781 (1021)
......... ...|++++|++++.. ........+..+.. +| .+++|||+||+|...
T Consensus 96 ~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 96 INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence 222222222 356899999998764 44555555544443 23 245899999999875
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=9.1e-09 Score=110.54 Aligned_cols=134 Identities=20% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHH---cCCCcccccccC------CcccccChH---HHhhhCceeeeeeeEEEeec
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFY---SGSSHKIGEVHH------GTTITDWMQ---QEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~---~~~~~~~g~~~~------~~~~~d~~~---~e~~rgiTi~~~~~~~~~~~ 72 (1021)
..+...|||.|++|+|||||+++|... .|.-...-.+++ |...-|... .....+..+.+....-....
T Consensus 51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg 130 (327)
T d2p67a1 51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 130 (327)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccccc
Confidence 345778999999999999999999732 222111111121 111112111 00112222322221111110
Q ss_pred ------------ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcC
Q psy5021 73 ------------NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMD 140 (1021)
Q Consensus 73 ------------~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D 140 (1021)
+..++.+.||.|.|.-. .++ .....+|.+++|+++..|...|...-- -..++-++|+||+|
T Consensus 131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq--~e~-~i~~~aD~~l~v~~P~~Gd~iq~~k~g----i~e~aDi~VvNKaD 203 (327)
T d2p67a1 131 ASQRARELMLLCEAAGYDVVIVETVGVGQ--SET-EVARMVDCFISLQIAGGGDDLQGIKKG----LMEVADLIVINKDD 203 (327)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTT--HHH-HHHTTCSEEEEEECC------CCCCHH----HHHHCSEEEECCCC
T ss_pred chhhhhHHHHHHHhcCCCeEEEeeccccc--cch-hhhhccceEEEEecCCCchhhhhhchh----hhccccEEEEEeec
Confidence 12356788999988754 222 466789999999998877655432111 11235589999999
Q ss_pred CCCCC
Q psy5021 141 RIGAN 145 (1021)
Q Consensus 141 ~~~~~ 145 (1021)
+++++
T Consensus 204 ~~~~~ 208 (327)
T d2p67a1 204 GDNHT 208 (327)
T ss_dssp TTCHH
T ss_pred ccchH
Confidence 97653
|
| >d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Elongation factor/aminomethyltransferase common domain superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=98.66 E-value=3.9e-08 Score=86.50 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=64.1
Q ss_pred ceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc-----------CCCcccccCCCeEEEEEEEceeeec
Q psy5021 943 SYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-----------PENVEMVLPGDNIKLNVTLLSSIAI 1011 (1021)
Q Consensus 943 ~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~g~~~~v~~~~~~pi~~ 1011 (1021)
.+++|+|+|+|+++. |+.+|.+..+++++..++|+++- ...++.|+.||.|.|+|++.+|+|+
T Consensus 2 vs~~f~A~i~Wm~~~------pl~~g~~y~lk~~t~~~~a~v~~i~~~id~~t~~~~~~~~l~~Ndi~~v~i~~~~~i~~ 75 (105)
T d1zunb2 2 VSDAFDAMLVWMAEE------PMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIAL 75 (105)
T ss_dssp EEEEEEEEEEECCSS------CBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEEC
T ss_pred cccEEEEEEEEecCC------cCCCCCEEEEEEcccEEEEEecceeEEEecCCcccccccccCCccEEEEEEEECCcccc
Confidence 578999999999964 89999999999999999877642 2357889999999999999999999
Q ss_pred ccC------CeEEEeC
Q psy5021 1012 EIG------LRFAIRE 1021 (1021)
Q Consensus 1012 ~~~------~rf~lr~ 1021 (1021)
++| |||+|+|
T Consensus 76 d~y~~n~~~G~fiLiD 91 (105)
T d1zunb2 76 DGYSSNRTTGAFIVID 91 (105)
T ss_dssp CCTTTCTTTTEEEEEC
T ss_pred CccccCcCceeEEEEE
Confidence 998 8999965
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.63 E-value=3.9e-08 Score=84.98 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=76.4
Q ss_pred CCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--
Q psy5021 295 SNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK-- 370 (1021)
Q Consensus 295 ~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-- 370 (1021)
++||+++|..+|..++.|++..|||.+|+++.||+|...+.+...+|+.|... ..++++|.|||.+++ .|++
T Consensus 3 d~Plr~pI~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~l~l~~i~~~ 78 (95)
T d1jnya1 3 DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH----HTKMDKAEPGDNIGFNVRGVEKK 78 (95)
T ss_dssp GSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET----TEEESEECTTCEEEEEEESSCGG
T ss_pred CcCEEEEEEEEEEcCCceeEEEEEEeeccccCCCEEEEEeCCceEEEEEEEec----CCccCEEeCCCcEEEEEEcCcHH
Confidence 57999999999999999999999999999999999999999999999988654 356899999999987 5664
Q ss_pred ccccCCeeccCCccc
Q psy5021 371 ESSTGDTLCSLSENI 385 (1021)
Q Consensus 371 ~~~~gdtl~~~~~~~ 385 (1021)
++..|+.||+.+.++
T Consensus 79 ~i~rG~vl~~~~~~p 93 (95)
T d1jnya1 79 DIKRGDVVGHPNNPP 93 (95)
T ss_dssp GCCTTCEEECTTSCC
T ss_pred hcCCCCEEECCCccC
Confidence 489999999987553
|
| >d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Elongation factor/aminomethyltransferase common domain superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain domain: Eukaryotic peptide chain release factor ERF2, C-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.60 E-value=1.5e-08 Score=81.22 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=34.2
Q ss_pred ceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeee
Q psy5021 943 SYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGIC 984 (1021)
Q Consensus 943 ~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~ 984 (1021)
++++|+|+|.+|+|+ ++|+.||+|++|+|+++++|++
T Consensus 2 a~~~F~A~I~vL~hp-----~~I~~Gy~~vlH~ht~~~~~~i 38 (68)
T d1r5ba2 2 ATTRFIAQIAILELP-----SILTTGYSCVMHIHTAVEEVSF 38 (68)
T ss_dssp EEEEEEEEEEECSSC-----CCBSSCCCBEEESSSCCCCBEE
T ss_pred ceeEEEEEEEEEcCC-----CcccCCcEEEEEeeeeEEEEEh
Confidence 578999999999998 6999999999999999999765
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.57 E-value=3.9e-08 Score=84.90 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=72.6
Q ss_pred CCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe--c-CC
Q psy5021 294 NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV--G-LK 370 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--g-l~ 370 (1021)
.++||++.|..+|. +.|.++.|||.+|+++.||+|...+.+...+|+.|+..+ ..++++|.|||.+++. | -.
T Consensus 6 ~~~PlR~pV~d~~k--g~G~vv~G~v~sG~i~~gd~v~i~P~~~~~~Vk~I~~~~---~~~v~~a~aGd~V~l~l~~~~~ 80 (95)
T d1r5ba1 6 VNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEA---DEEISSSICGDQVRLRVRGDDS 80 (95)
T ss_dssp HTSCCEEECCEEEE--SSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTT---CCEESEEETTCEEEEEEESCCT
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEeeCeEeCCCEEEEecCCCEEEEEEEEEEc---cccccCcCCCCEEEEEEcCccc
Confidence 47899999999985 579999999999999999999999999999999886433 3458999999999995 4 23
Q ss_pred ccccCCeeccCCcc
Q psy5021 371 ESSTGDTLCSLSEN 384 (1021)
Q Consensus 371 ~~~~gdtl~~~~~~ 384 (1021)
++..|++||+...|
T Consensus 81 di~rG~vl~~~~~P 94 (95)
T d1r5ba1 81 DVQTGYVLTSTKNP 94 (95)
T ss_dssp TCCTTCEEECSSSC
T ss_pred ccCCCCEEEcCCCC
Confidence 58999999997654
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=2.3e-07 Score=83.67 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=72.5
Q ss_pred CCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccC
Q psy5021 850 DKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVK 925 (1021)
Q Consensus 850 ~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~ 925 (1021)
+.||.+.|.++...+..|.++.+||.+|+|++||.|+..- ...+.+|..+... ..++++|.|||.+++. +
T Consensus 24 ~~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~--~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~~i~--g-- 97 (121)
T d2bv3a1 24 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT--KGRKERVARLLRMHANHREEVEELKAGDLGAVV--G-- 97 (121)
T ss_dssp TSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETT--TTEEEEECEEEEECSSCEEEESEEETTCEEEEE--S--
T ss_pred CCCEEEEEEeeeecCCCCeEEeeeecccccCCCCEEEEcc--CCCEEEEeeeeeeecccccEeeEeccccceEEe--c--
Confidence 6899999999999999999999999999999999998763 3345677777664 3489999999999877 3
Q ss_pred ccCcccceEEeeCCCc
Q psy5021 926 REEVERGQVLAKIGSI 941 (1021)
Q Consensus 926 ~~~i~~G~vl~~~~~~ 941 (1021)
.++++.||+||+.+.|
T Consensus 98 l~~~~~GDTl~~~~~p 113 (121)
T d2bv3a1 98 LKETITGDTLVGEDAP 113 (121)
T ss_dssp CSSCCTTCEEEETTSC
T ss_pred cCCceeCCEEecCCCC
Confidence 5678999999987754
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=1.1e-07 Score=81.00 Aligned_cols=83 Identities=23% Similarity=0.287 Sum_probs=69.0
Q ss_pred CCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCC--CceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC
Q psy5021 295 SNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNST--KKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK 370 (1021)
Q Consensus 295 ~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~ 370 (1021)
++||+++|..+|..++.|+++.++|.+|+++.||.|...+ ...+.+++.|... ..++++|.|||-+++ .|++
T Consensus 3 d~P~rlpId~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~~~~~~~~vksi~~~----~~~~~~a~aG~~v~l~L~gi~ 78 (92)
T d1efca1 3 DKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIK 78 (92)
T ss_dssp GSCCEEECCEEEECTTSCEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEEET----TEEESEEETTCEEEEEETTCC
T ss_pred CCCEEEEEEEEEEcCCeEEEEEEEeccCeEcCCCEEEEEcCCCCcEEEEEEEEEC----CcCccccCCCCEEEEEEcCCC
Confidence 5799999999999999999999999999999999998644 3345667777433 467899999999998 4554
Q ss_pred --ccccCCeeccC
Q psy5021 371 --ESSTGDTLCSL 381 (1021)
Q Consensus 371 --~~~~gdtl~~~ 381 (1021)
+++.|+.||.+
T Consensus 79 ~~~i~rG~vl~~p 91 (92)
T d1efca1 79 REEIERGQVLAKP 91 (92)
T ss_dssp GGGCCTTCEEECT
T ss_pred HHHcCCccEEeCC
Confidence 48899999875
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.49 E-value=8.5e-08 Score=102.70 Aligned_cols=133 Identities=18% Similarity=0.154 Sum_probs=69.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHH---cCCCcc------cccccCCcccccChHH---HhhhCceeeeeeeEEEeec-
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFY---SGSSHK------IGEVHHGTTITDWMQQ---EQERGITITSASVSIFWEV- 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~---~~~~~~------~g~~~~~~~~~d~~~~---e~~rgiTi~~~~~~~~~~~- 72 (1021)
.+...|+|.|.+|+|||||+++|... .|.-.. ......|.-.-|.... ....+.-+.+....-....
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence 45678999999999999999999853 221111 1111222212221110 0111111111110000000
Q ss_pred -----------ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCC
Q psy5021 73 -----------NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 73 -----------~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~ 141 (1021)
+..++.+.||-|.|--.- + ......+|..++|+.+..|...|...- -...++=++|+||+|+
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~--e-~~~~~~~D~~v~v~~p~~GD~iQ~~k~----gilE~aDi~vvNKaD~ 201 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQS--E-TAVADLTDFFLVLMLPGAGDELQGIKK----GIFELADMIAVNKADD 201 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSC--H-HHHHTTSSEEEEEECSCC------CCT----THHHHCSEEEEECCST
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhh--h-hhhhcccceEEEEeeccchhhhhhhhh----hHhhhhheeeEecccc
Confidence 113578899999986442 1 224456999999999998866553211 1123456999999998
Q ss_pred CCCC
Q psy5021 142 IGAN 145 (1021)
Q Consensus 142 ~~~~ 145 (1021)
.++.
T Consensus 202 ~~~~ 205 (323)
T d2qm8a1 202 GDGE 205 (323)
T ss_dssp TCCH
T ss_pred ccch
Confidence 7653
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=98.49 E-value=3.3e-08 Score=86.81 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=68.8
Q ss_pred CCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEec
Q psy5021 847 RITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLR 922 (1021)
Q Consensus 847 ~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~ 922 (1021)
+..|.||.+.|.++...+..|.+..+||.+|+|++||+|+... .. .++..+... ..+++++.+||.|++.
T Consensus 4 ~~~d~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~--~~--~~~~~~~~~~~~~~~~v~~~~aGdI~~v~-- 77 (103)
T d2dy1a1 4 RFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQ--VRLPHLYVPMGKDLLEVEEAEAGFVLGVP-- 77 (103)
T ss_dssp HHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT--SC--EEESSEEEEETTEEEEESCEETTCEEEES--
T ss_pred CCCCCCcEEEEEEEEecCCCCEEEEEEEeccccCCCCEEEEee--cc--cccceeeeeecCcceecCEecCCCEEEEe--
Confidence 4568899999999999999999999999999999999987642 22 233444332 3488999999998753
Q ss_pred ccCccCcccceEEeeCCCc
Q psy5021 923 SVKREEVERGQVLAKIGSI 941 (1021)
Q Consensus 923 ~~~~~~i~~G~vl~~~~~~ 941 (1021)
+ .++++.||+||+.+.|
T Consensus 78 g--~~~~~iGDTl~~~~~p 94 (103)
T d2dy1a1 78 K--AEGLHRGMVLWQGEKP 94 (103)
T ss_dssp S--CTTCCTTCEEESSSCC
T ss_pred C--CCCCccCCEEcCCCCc
Confidence 4 5679999999987644
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=98.40 E-value=3.9e-07 Score=79.19 Aligned_cols=86 Identities=24% Similarity=0.266 Sum_probs=72.3
Q ss_pred CCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeC---CCceeeEeceEEEeecCCeeccccccCCCEEEE--ec
Q psy5021 294 NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNS---TKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VG 368 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~---~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~g 368 (1021)
.++||+++|..+|..++.|.+..|||.+|+++.||.+... +.+...+|..|... ..++++|.|||-+++ .|
T Consensus 5 ~~~p~r~~Id~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~~p~~~~~~V~sI~~~----~~~~~~a~aG~~v~l~l~g 80 (100)
T d2c78a1 5 VDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRG 80 (100)
T ss_dssp CSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET----TEEESEEETTCEEEEEESS
T ss_pred CCCCEEEEEEEEEEcCCcEEEEEEEEeccEEECCCEeEEEeecCCCcEEEEEEEEEC----CccccEEeCCCeEEEEEcC
Confidence 4789999999999999999999999999999999999975 55566778877532 467899999999998 45
Q ss_pred CC--ccccCCeeccCCc
Q psy5021 369 LK--ESSTGDTLCSLSE 383 (1021)
Q Consensus 369 l~--~~~~gdtl~~~~~ 383 (1021)
++ ++..|+.||++..
T Consensus 81 i~~~~i~rG~vl~~p~~ 97 (100)
T d2c78a1 81 VSREEVERGQVLAKPGS 97 (100)
T ss_dssp CCTTTCCTTCEEESTTS
T ss_pred CCHHHccCcCEEECCCC
Confidence 54 4889999998653
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=3.8e-07 Score=97.66 Aligned_cols=173 Identities=16% Similarity=0.088 Sum_probs=88.6
Q ss_pred cccceeeeeeeeeccchhhhhhhcccccccc-------cccccccc----ccCCch---hhhhcCceEeeeE--EE----
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIY-------GGEVRAFD----TIDNAP---EEKERGITISTSH--VE---- 708 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~-------~~~~~~~~----~~d~~~---~e~~~G~Ti~~~~--~~---- 708 (1021)
-++..+|+.|.+|+|||||+++|.......+ ..+.+.++ .-|+.. .....+.-+.... ..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence 4578899999999999999999974322111 11111110 001110 0011111111100 00
Q ss_pred ----------EeeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecc
Q psy5021 709 ----------YESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKAD 778 (1021)
Q Consensus 709 ----------~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D 778 (1021)
++..+..+.|+.|.|.-.- -......+|..++|++...|-.-|...- .++ .++. ++|+||+|
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~-gi~---e~aD-i~VvNKaD 203 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKK-GLM---EVAD-LIVINKDD 203 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCH-HHH---HHCS-EEEECCCC
T ss_pred hhhhhHHHHHHHhcCCCeEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhch-hhh---cccc-EEEEEeec
Confidence 1234567888888885321 1234567999999998776544333211 111 1243 45779999
Q ss_pred ccchhhHHHHHHHHHHHhhhccc--cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 779 CVQDKELLDLVEMEIRELLTEYD--FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 779 l~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+.... .......++...++.+. .+....+++.+||++| .|+++|+++|.++
T Consensus 204 ~~~~~-~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g-----------~Gi~eL~~~I~~~ 256 (327)
T d2p67a1 204 GDNHT-NVAIARHMYESALHILRRKYDEWQPRVLTCSALEK-----------RGIDEIWHAIIDF 256 (327)
T ss_dssp TTCHH-HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGT-----------BSHHHHHHHHHHH
T ss_pred ccchH-HHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCC-----------CCHHHHHHHHHHH
Confidence 87632 22333344444443221 1223468999999988 4888888888653
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=98.37 E-value=4.2e-07 Score=78.62 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=69.2
Q ss_pred CCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEe--CCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecC
Q psy5021 294 NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYN--STKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGL 369 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~--~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl 369 (1021)
.++||+++|..+|..++.|.++.++|.+|+++.||.+.. .+.+...++..|.. ...++++|.|||-+++ .|+
T Consensus 4 ~d~Pfr~pId~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~~~~~~~~V~si~~----~~~~~~~a~aG~~v~l~l~gi 79 (98)
T d1d2ea1 4 LEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEM----FHKSLDRAEAGDNLGALVRGL 79 (98)
T ss_dssp TTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEE----TTEEESEEETTCEEEEEESSC
T ss_pred CCCCEEEEEEEEEEeCCcEEEEecceeeeeEeCCCEEEEccCCCCeeEEEEEEEE----eccEeccCCCCCEEEEEEcCC
Confidence 578999999999999999999999999999999999954 33334455666643 2467899999999998 466
Q ss_pred C--ccccCCeeccCC
Q psy5021 370 K--ESSTGDTLCSLS 382 (1021)
Q Consensus 370 ~--~~~~gdtl~~~~ 382 (1021)
+ +++.|+.||++.
T Consensus 80 ~~~~i~rG~vl~~p~ 94 (98)
T d1d2ea1 80 KREDLRRGLVMAKPG 94 (98)
T ss_dssp CGGGCCTTCEEESTT
T ss_pred CHHHccCccEEeCCC
Confidence 5 488999999864
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Probab=98.27 E-value=4.3e-08 Score=83.94 Aligned_cols=85 Identities=25% Similarity=0.227 Sum_probs=73.8
Q ss_pred CCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecC--
Q psy5021 294 NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGL-- 369 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl-- 369 (1021)
.++||++.|..+|..++.|.++.+||.+|+++.||.|...+.+.+.+|..|. + ...++++|.|||.+++ .|+
T Consensus 3 ~~~~fr~~I~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~~~~~~VksI~-~---~~~~~~~a~aGd~v~l~L~gi~~ 78 (92)
T d1wb1a1 3 TESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQ-Y---FKESVMEAKAGDRVGMAIQGVDA 78 (92)
T ss_dssp SSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBC-G---GGSCBCCCCSSCCCCEECSSCCS
T ss_pred CCCCEEEEEEEEEEeCCcEEEEEeEEeeceEecCCeEEEeccCCceEEEeee-E---cCceeeEeCCCCEEEEEEcCCCH
Confidence 4789999999999999999999999999999999999999999889999884 2 2457899999999998 454
Q ss_pred CccccCCeeccCC
Q psy5021 370 KESSTGDTLCSLS 382 (1021)
Q Consensus 370 ~~~~~gdtl~~~~ 382 (1021)
+++..|+.||+++
T Consensus 79 ~~i~rG~vl~~~~ 91 (92)
T d1wb1a1 79 KQIYRGCILTSKD 91 (92)
T ss_dssp SCCCSSCBCCCTT
T ss_pred HHcCCcCEEeCCC
Confidence 4588999998864
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=98.26 E-value=1.1e-06 Score=74.81 Aligned_cols=87 Identities=16% Similarity=0.090 Sum_probs=69.9
Q ss_pred CCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe--cCCc
Q psy5021 294 NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV--GLKE 371 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl~~ 371 (1021)
.+.+|++.|-.++.....++...|+|.+|+++.||+|...+.++..+|++|+... .++++|.||+.++|. +-.+
T Consensus 3 n~~~fr~pVQ~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Psg~~~~Vk~I~~~~----~~~~~a~~G~~v~l~L~~~~d 78 (92)
T d1zunb1 3 NYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAVTLTMEDEID 78 (92)
T ss_dssp CSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEEEEEESSCCC
T ss_pred CCCCeEEeEEEEEccCCCccEEEEEEcccEEecCCEEEECCCCceEEEeEEEEcC----cccCEEcCCCEEEEEEcCccc
Confidence 3457888777776655456778899999999999999999999999999996442 468899999999984 3335
Q ss_pred cccCCeeccCCcc
Q psy5021 372 SSTGDTLCSLSEN 384 (1021)
Q Consensus 372 ~~~gdtl~~~~~~ 384 (1021)
+..||+||++..+
T Consensus 79 i~RGdvl~~~~~~ 91 (92)
T d1zunb1 79 ISRGDLLVHADNV 91 (92)
T ss_dssp CCTTCEEEETTSC
T ss_pred cCCCCEEecCCCC
Confidence 7889999987654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.21 E-value=2.9e-06 Score=90.59 Aligned_cols=69 Identities=10% Similarity=0.142 Sum_probs=47.1
Q ss_pred ceeEEEEcCCCCCCc-------------HHHHHHHhhccCeEEEE-EeCCCCCc-hhHHHHHHHHhhcCCCEEEEEeCcC
Q psy5021 76 KYMINIIDTPGHVDF-------------TIEVERSLRVLDGAVII-ICASSGIQ-PQTETVWFQSQKYKVPKMIFVNKMD 140 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f-------------~~~~~~~l~~~D~~ilv-vda~~g~~-~~t~~~~~~~~~~~~p~iiviNK~D 140 (1021)
-..++||||||.... ...+..++..+|.++++ +++..... .....+.+.+...+.++++|+||+|
T Consensus 130 ~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D 209 (306)
T d1jwyb_ 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (306)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEeccc
Confidence 356999999997532 24566678889976555 56655443 3345556666666778999999999
Q ss_pred CCCC
Q psy5021 141 RIGA 144 (1021)
Q Consensus 141 ~~~~ 144 (1021)
....
T Consensus 210 ~~~~ 213 (306)
T d1jwyb_ 210 LMDK 213 (306)
T ss_dssp SSCS
T ss_pred cccc
Confidence 8643
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.16 E-value=5e-07 Score=95.23 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=53.2
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----------------C
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----------------N 713 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----------------~ 713 (1021)
++.+|++|++|+|||||+|+|++....+++.++. |+++....+... .
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~----------------ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~ 65 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFC----------------TIEPNTGVVPMPDPRLDALAEIVKPERILP 65 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCC----------------CCCCCSSEEECCCHHHHHHHHHHCCSEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCC----------------CCCCceEEEecccHhHHHHHHhcCCCceee
Confidence 4789999999999999999999876666555543 222222222111 1
Q ss_pred eEEEEEecCCh-----hh--hHHHHHHHhhhCCEEEEEEECCC
Q psy5021 714 KHYAHVDCPGH-----AD--YIKNMITGAAQMDGAILVCSAVD 749 (1021)
Q Consensus 714 ~~i~liDtpG~-----~~--~~~~~~~~~~~aD~ailVvDa~~ 749 (1021)
-.+.|+|.||. +- .....++.++.+|++++||||..
T Consensus 66 a~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeeccC
Confidence 25789999993 21 22235666899999999999853
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.15 E-value=3.8e-06 Score=89.42 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=46.8
Q ss_pred eeEEEEcCCCCCCc-------------HHHHHHHhhccCeE-EEEEeCCCCCchhH-HHHHHHHhhcCCCEEEEEeCcCC
Q psy5021 77 YMINIIDTPGHVDF-------------TIEVERSLRVLDGA-VIIICASSGIQPQT-ETVWFQSQKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 77 ~~i~liDtPG~~~f-------------~~~~~~~l~~~D~~-ilvvda~~g~~~~t-~~~~~~~~~~~~p~iiviNK~D~ 141 (1021)
..+.||||||...- ...+..++...+.+ ++|.++......+. ..+.+.+...+.+.++|+||+|+
T Consensus 125 ~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D~ 204 (299)
T d2akab1 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 204 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGG
T ss_pred CCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEecccc
Confidence 45899999997321 24456667777754 56666765554443 45566777777899999999998
Q ss_pred CCC
Q psy5021 142 IGA 144 (1021)
Q Consensus 142 ~~~ 144 (1021)
...
T Consensus 205 ~~~ 207 (299)
T d2akab1 205 MDE 207 (299)
T ss_dssp SCT
T ss_pred ccc
Confidence 753
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.14 E-value=1.5e-06 Score=92.81 Aligned_cols=173 Identities=17% Similarity=0.082 Sum_probs=91.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccc-------ccccccccc----ccCCchhh---hhcCceEeeeE--E------
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEI-------YGGEVRAFD----TIDNAPEE---KERGITISTSH--V------ 707 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~-------~~~~~~~~~----~~d~~~~e---~~~G~Ti~~~~--~------ 707 (1021)
++..+|+.|.+++|||||+++|....... ...+.+.++ .-|+..-. ...++-+.... .
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~ 129 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 129 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccchh
Confidence 56889999999999999999998532111 111111110 00111100 01111010000 0
Q ss_pred --------EEeeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccc
Q psy5021 708 --------EYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADC 779 (1021)
Q Consensus 708 --------~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl 779 (1021)
.++..+..+.|+-|.|.-.- -......+|..++|+....|..-|...- .+ +.+.. |+|+||+|+
T Consensus 130 ~~~~~~i~~~~~~g~d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~iQ~~k~-gi---lE~aD-i~vvNKaD~ 201 (323)
T d2qm8a1 130 AKTRETMLLCEAAGFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKK-GI---FELAD-MIAVNKADD 201 (323)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCT-TH---HHHCS-EEEEECCST
T ss_pred HHHHHHHHhhccCCCCeEEEeehhhhhh---hhhhhcccceEEEEeeccchhhhhhhhh-hH---hhhhh-eeeEecccc
Confidence 11335678888999885321 1122356999999999887654333210 01 11232 457899998
Q ss_pred cchhhHHHHHHHHHHHhhhcccc--CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 780 VQDKELLDLVEMEIRELLTEYDF--DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 780 ~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+..........+....+....- .....+++.+||+++ +|+++|+++|.++
T Consensus 202 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g-----------~Gi~el~~~I~~~ 254 (323)
T d2qm8a1 202 GDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHG-----------KGLDSLWSRIEDH 254 (323)
T ss_dssp TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTT-----------BSHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCC-----------CCHHHHHHHHHHH
Confidence 76444444444455554443321 122467999999987 3788888887654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.09 E-value=5.2e-07 Score=97.27 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=46.1
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEE----------------EEeeCCeEE
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV----------------EYESENKHY 716 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~----------------~~~~~~~~i 716 (1021)
-+|++|++|+|||||+|+|++....+++.++... ++..|++...... ...+....+
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~--------~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 73 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTI--------EANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPV 73 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEE
T ss_pred cEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcc--------cCccceeeCCCCchhhhhhhccCccccccccccccccE
Confidence 4799999999999999999998777766665311 2223333211110 001123568
Q ss_pred EEEecCChhhh-------HHHHHHHhhhCCEEEEEEECCC
Q psy5021 717 AHVDCPGHADY-------IKNMITGAAQMDGAILVCSAVD 749 (1021)
Q Consensus 717 ~liDtpG~~~~-------~~~~~~~~~~aD~ailVvDa~~ 749 (1021)
.|+|+||.-.. ....+..++.+|++++||||..
T Consensus 74 ~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 74 KMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp EEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred EEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 99999995332 2223333578999999999863
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.08 E-value=1.3e-06 Score=92.77 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=58.4
Q ss_pred ccceeeeeeeeeccchhhhhhhccccc-cccccccccccccCCchhhhhcCceEeeeEEEEeeC----------------
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSS-EIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---------------- 712 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~-~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---------------- 712 (1021)
.++.+|++|.+|+|||||+|+|++... .+++.++ +|+++....+...
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypf----------------tTi~pn~g~v~v~d~r~~~l~~~~~~~~~ 72 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPY----------------ATIDPEEAKVAVPDERFDWLCEAYKPKSR 72 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSS----------------CCCCTTEEEEEECCHHHHHHHHHHCCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCc----------------cCccCCeEEEeccccchhhhhhcccCCce
Confidence 357899999999999999999997543 3444443 3444333333222
Q ss_pred -CeEEEEEecCChhh-------hHHHHHHHhhhCCEEEEEEECCC
Q psy5021 713 -NKHYAHVDCPGHAD-------YIKNMITGAAQMDGAILVCSAVD 749 (1021)
Q Consensus 713 -~~~i~liDtpG~~~-------~~~~~~~~~~~aD~ailVvDa~~ 749 (1021)
...+.|+|.||... .....+..++.||+.++|||+..
T Consensus 73 ~~~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 73 VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp ECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ecccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence 24688999999321 23455666899999999999865
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.08 E-value=9.9e-06 Score=68.64 Aligned_cols=80 Identities=24% Similarity=0.179 Sum_probs=65.3
Q ss_pred CCCce-EEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecC-
Q psy5021 294 NSNKF-VSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGL- 369 (1021)
Q Consensus 294 ~~~p~-~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl- 369 (1021)
...|+ +.+|..+|..++ |++..|+|.+|++++||.|...+. +.+|+.|... ..++++|.|||-+++ .|-
T Consensus 5 ~~kp~~R~~Id~vf~i~G-gtVvtGtV~sG~i~~Gd~v~~~p~--~~~VksIq~~----~~~v~~a~~G~~v~l~L~~~~ 77 (91)
T d1xe1a_ 5 SKKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPSG--IGGIVRIERN----REKVEFAIAGDRIGISIEGKI 77 (91)
T ss_dssp CSSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEEECSSC--EEEEEEEEET----TEEESEEETTCEEEEEEESCC
T ss_pred cCCCccEeeEEEEEEECC-cEEEEEEEeeCCcCCCCEEEECCc--cEEEEEEEEc----ceEhhhhhhcceeEEEEcCCc
Confidence 45676 899999999999 999999999999999999998764 4577777532 356899999999998 342
Q ss_pred CccccCCeecc
Q psy5021 370 KESSTGDTLCS 380 (1021)
Q Consensus 370 ~~~~~gdtl~~ 380 (1021)
+++..||.|..
T Consensus 78 ~di~rGdvL~~ 88 (91)
T d1xe1a_ 78 GKVKKGDVLEI 88 (91)
T ss_dssp CCCCTTCEEEE
T ss_pred CCcCCCCEEEe
Confidence 25888998864
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.06 E-value=1.1e-05 Score=74.13 Aligned_cols=90 Identities=17% Similarity=0.364 Sum_probs=71.2
Q ss_pred CCCCeeEEEEEEEeeCCcee-EEEEEEEEEEeeCCCEEEEeecC-------CeeEEEEEEEEecc----cccceeccCce
Q psy5021 849 TDKPFLMPIEDVFSISGRGT-VVTGKIERGIVKNGEEIEIVGYK-------QTIKTTITGIEMFK----KTLDEGLAGEN 916 (1021)
Q Consensus 849 ~~~p~~~~I~~~~~v~g~G~-Vv~G~V~~G~l~~gd~v~i~p~~-------~~~~~~Vksi~~~~----~~~~~a~~G~~ 916 (1021)
.+.||.+.|..+...+..|. ++.|||.+|+|++||+|++...+ .....+|..|.... .++++|.|||.
T Consensus 31 ~~~Pl~~~v~k~~~~~~~g~~~~~gRV~SGtl~~G~~v~vl~~~~~~~~~~~~~~~~i~~i~~~~g~~~~~v~~a~AGdI 110 (138)
T d1n0ua1 31 PKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNI 110 (138)
T ss_dssp TTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCE
T ss_pred CCCCEEEEEEeeccCCCCCEEEEEEEEEeceEcCCCEEEEecCCcccccccccceeeeeeeEEEecCceeeEeEEecCcE
Confidence 47899999999999999998 57799999999999999986311 23456788887764 48999999999
Q ss_pred EEEEecccCccCcccceEEeeCCCc
Q psy5021 917 VGILLRSVKREEVERGQVLAKIGSI 941 (1021)
Q Consensus 917 v~l~l~~~~~~~i~~G~vl~~~~~~ 941 (1021)
|++. |++ ..+.+|++||+.+.+
T Consensus 111 vai~--Gl~-~~i~k~~Tl~~~~~~ 132 (138)
T d1n0ua1 111 IGLV--GID-QFLLKTGTLTTSETA 132 (138)
T ss_dssp EEEE--SCT-TTCCSSEEEESCTTC
T ss_pred EEEe--ccc-cceeccceecCCCCC
Confidence 9885 542 226779999987643
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=97.99 E-value=9.4e-06 Score=72.49 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=65.7
Q ss_pred CCCceEEEEEEEeecCC--------CceEEEEEEEeeEEecCCEEEeCCCcee------------eEeceEEEeecCCee
Q psy5021 294 NSNKFVSLVFKIFHDPF--------LGSLSFIRIYSGFIKVGDLVYNSTKKVK------------EKIFRILRMFANSKK 353 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~--------~g~~~~~RV~sG~l~~gd~v~~~~~~~~------------~~i~~i~~~~g~~~~ 353 (1021)
.+.|++++|..+|...+ +|.++.|+|.+|+|+.||.|...+.++. .+|..|... ..
T Consensus 5 ~~~p~r~~Idr~F~v~g~Gt~~~~~~G~VvtGtv~sG~ik~GD~v~i~P~~~~~~~~~~~~~~~~~~V~sI~~~----~~ 80 (121)
T d1kk1a1 5 PNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAG----GQ 80 (121)
T ss_dssp TTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TE
T ss_pred CCCCcEEEEEEEEEecCCCCccccCcceEEEeeecCCEEecCCEEEECCCCccccccceeceeeeeEEEEEEEC----CC
Confidence 57899999999997644 4559999999999999999998765542 356666432 35
Q ss_pred ccccccCCCEEEEe-----cCC--ccccCCeeccCCc
Q psy5021 354 DINDAHFGDIVVIV-----GLK--ESSTGDTLCSLSE 383 (1021)
Q Consensus 354 ~v~~a~aGdIv~i~-----gl~--~~~~gdtl~~~~~ 383 (1021)
++++|.|||-+++. +++ ++..|++|+.+..
T Consensus 81 ~v~~A~~G~~Vgv~l~~d~~i~r~Dv~rG~Vl~~pg~ 117 (121)
T d1kk1a1 81 FVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGK 117 (121)
T ss_dssp EESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTC
T ss_pred CcCEEeCCCeEEEEecccCCcchhHhcceeEEECCCC
Confidence 69999999999984 221 4678888888654
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.94 E-value=1.3e-05 Score=71.23 Aligned_cols=85 Identities=19% Similarity=0.126 Sum_probs=66.0
Q ss_pred CCCceEEEEEEEeecCC--------CceEEEEEEEeeEEecCCEEEeCCCce------------eeEeceEEEeecCCee
Q psy5021 294 NSNKFVSLVFKIFHDPF--------LGSLSFIRIYSGFIKVGDLVYNSTKKV------------KEKIFRILRMFANSKK 353 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~--------~g~~~~~RV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~g~~~~ 353 (1021)
.+.|++++|.++|...+ .|.++.++|.+|+|+.||+|...+.++ +.+|..|... ..
T Consensus 3 ~~~p~~~~I~r~F~i~~~gt~~~~~~G~VvtGtv~sG~i~~GD~v~i~P~~~~~~~~~~~~~~~~t~V~sI~~~----~~ 78 (118)
T d1s0ua1 3 PDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG----NT 78 (118)
T ss_dssp TTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET----TE
T ss_pred CCCCcEEEEEeEEcccCCCCccccccccEEEeeecccEEeeCCEEEECCCCcccccceeeeeeeeEEEEEEEEC----Cc
Confidence 57899999999996554 445999999999999999999876543 3567777543 45
Q ss_pred ccccccCCCEEEEecCC--------ccccCCeeccCCc
Q psy5021 354 DINDAHFGDIVVIVGLK--------ESSTGDTLCSLSE 383 (1021)
Q Consensus 354 ~v~~a~aGdIv~i~gl~--------~~~~gdtl~~~~~ 383 (1021)
++++|.|||-++|. |+ ++..|+.|+.+..
T Consensus 79 ~v~~A~aG~~V~i~-l~~d~~i~r~Di~~G~Vl~~pg~ 115 (118)
T d1s0ua1 79 ILRKAHPGGLIGVG-TTLDPYLTKSDALTGSVVGLPGT 115 (118)
T ss_dssp EESEECSSSCEEEE-CSSCGGGTGGGTTTTCEEESTTC
T ss_pred ccCEEeCCCEEEEE-eccCCCccHHHheeeeEEeCCCC
Confidence 68999999999995 43 3567888887653
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.92 E-value=1.6e-05 Score=84.37 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=43.3
Q ss_pred eEEEEEecCChh-------------hhHHHHHHHhhhCCEE-EEEEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEeecc
Q psy5021 714 KHYAHVDCPGHA-------------DYIKNMITGAAQMDGA-ILVCSAVDGPMPQT-REHILLARQVGVPNIVVFLNKAD 778 (1021)
Q Consensus 714 ~~i~liDtpG~~-------------~~~~~~~~~~~~aD~a-ilVvDa~~g~~~qt-~e~l~~~~~~~ip~iIvviNK~D 778 (1021)
..++|+||||.. .....+..++..++.+ ++|.++......+. .+.+..+...+.+ +++|+||+|
T Consensus 125 ~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r-~i~Vltk~D 203 (299)
T d2akab1 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQR-TIGVITKLD 203 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSS-EEEEEECGG
T ss_pred CCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCc-eeeEEeccc
Confidence 468999999942 1234556677777754 55666665554333 3344444344445 899999999
Q ss_pred ccch
Q psy5021 779 CVQD 782 (1021)
Q Consensus 779 l~~~ 782 (1021)
....
T Consensus 204 ~~~~ 207 (299)
T d2akab1 204 LMDE 207 (299)
T ss_dssp GSCT
T ss_pred cccc
Confidence 8863
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.88 E-value=4.2e-06 Score=89.92 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=45.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEE-----Eeecc-------cCce
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI-----FWEVN-------KFKY 77 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~-----~~~~~-------~~~~ 77 (1021)
.||++|.+|+|||||+|+|.... .+.|+.. |...+...|++.......+ .+... ....
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~---~~v~nyp-------ftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD---VEIANYP-------FTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALI 71 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEE
T ss_pred cEeEECCCCCCHHHHHHHHHCCC---CchhcCC-------CCcccCccceeeCCCCchhhhhhhccCccccccccccccc
Confidence 48999999999999999996322 1222110 0001111222211000000 00000 1135
Q ss_pred eEEEEcCCCCCCc-------HHHHHHHhhccCeEEEEEeCCC
Q psy5021 78 MINIIDTPGHVDF-------TIEVERSLRVLDGAVIIICASS 112 (1021)
Q Consensus 78 ~i~liDtPG~~~f-------~~~~~~~l~~~D~~ilvvda~~ 112 (1021)
.+.++|+||...- .....+.++.+|+++.|||+..
T Consensus 72 ~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 72 PVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp EEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred cEEEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 7999999997543 2233345688999999999974
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.82 E-value=2e-05 Score=83.88 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=42.9
Q ss_pred eEEEEEecCChhh-------------hHHHHHHHhhhCCEEEEEE-ECCCCCcH-HHHHHHHHHHHcCCCeEEEEEeecc
Q psy5021 714 KHYAHVDCPGHAD-------------YIKNMITGAAQMDGAILVC-SAVDGPMP-QTREHILLARQVGVPNIVVFLNKAD 778 (1021)
Q Consensus 714 ~~i~liDtpG~~~-------------~~~~~~~~~~~aD~ailVv-Da~~g~~~-qt~e~l~~~~~~~ip~iIvviNK~D 778 (1021)
..++|+||||... ....+..++..+|.+++++ ++...... ...+.+..+...+. ++++|+||+|
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~-r~i~Vitk~D 209 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGK-RTIGVITKLD 209 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCS-SEEEEEECTT
T ss_pred CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCC-eEEEEEeccc
Confidence 5689999999532 2355667788898766654 65554433 23334333333344 4999999999
Q ss_pred ccc
Q psy5021 779 CVQ 781 (1021)
Q Consensus 779 l~~ 781 (1021)
...
T Consensus 210 ~~~ 212 (306)
T d1jwyb_ 210 LMD 212 (306)
T ss_dssp SSC
T ss_pred ccc
Confidence 876
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.79 E-value=6.1e-06 Score=86.30 Aligned_cols=126 Identities=19% Similarity=0.115 Sum_probs=64.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.-.+|+|+|.+|+|||||+|+|+........ ...|+|.....+ +. +..+.++||||
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-----------------~~pG~Tr~~~~i---~~----~~~~~l~DTPG 166 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTG-----------------DRPGITTSQQWV---KV----GKELELLDTPG 166 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-----------------------------CCE---EE----TTTEEEEECCC
T ss_pred CceEEEEEecCccchhhhhhhhhccceEEEC-----------------CcccccccceEE---EC----CCCeEEecCCC
Confidence 4467999999999999999999854332221 345667655433 22 45699999999
Q ss_pred CC--Cc-HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 87 HV--DF-TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 87 ~~--~f-~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
.. .+ ..+....+...+++ -|...+.......+++.+.......+....++|....+..+.++.+.++.|.
T Consensus 167 i~~p~~~~~~~~~~la~~~~i---~~~~~~~~~~~~~ll~~l~~~~~~~l~~~~~~~~~~~d~~~~l~~ia~~~g~ 239 (273)
T d1puja_ 167 ILWPKFEDELVGLRLAVTGAI---KDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRGC 239 (273)
T ss_dssp CCCSCCCCHHHHHHHHHHTSS---CTTSSCHHHHHHHHHHHHHHHCHHHHHHHTTCSSCCSSHHHHHHHHHHHHTC
T ss_pred ccccCCccHHHHhhhhhcCCc---chhhcchhhHHHHHHHHHHHhChHhhhHhcCCCCCCCCHHHHHHHHHHHhCC
Confidence 63 22 23333333333321 1222233333333444333322112222344555566788888888777653
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.79 E-value=1.9e-05 Score=82.72 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=55.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc----------cC---c
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN----------KF---K 76 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~----------~~---~ 76 (1021)
.|||+|-+++|||||+++|......+.. -...|++++...+...+. .+ .
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~------------------ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~ 65 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAAN------------------YPFCTIEPNTGVVPMPDPRLDALAEIVKPERILP 65 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCcccc------------------CCCCCCCCceEEEecccHhHHHHHHhcCCCceee
Confidence 6999999999999999999753322111 112244444333332210 00 1
Q ss_pred eeEEEEcCCCCCCcHH-------HHHHHhhccCeEEEEEeCCC
Q psy5021 77 YMINIIDTPGHVDFTI-------EVERSLRVLDGAVIIICASS 112 (1021)
Q Consensus 77 ~~i~liDtPG~~~f~~-------~~~~~l~~~D~~ilvvda~~ 112 (1021)
..+.++|.||.+.-.. +..+-++.+|+.+.|||+..
T Consensus 66 a~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeeccC
Confidence 2588999999865543 46788999999999999864
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.74 E-value=2.8e-05 Score=82.15 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=58.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc-------------cC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN-------------KF 75 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~-------------~~ 75 (1021)
-.|||+|.+|+|||||+++|.....+ ..++ -++.|++++...+...+. .-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~--~~an---------------ypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~ 73 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLG--NPAN---------------YPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV 73 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTT--STTC---------------CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCCC--CcCC---------------CCccCccCCeEEEeccccchhhhhhcccCCcee
Confidence 45999999999999999999743221 1110 123455555444443310 01
Q ss_pred ceeEEEEcCCCCCC-------cHHHHHHHhhccCeEEEEEeCCC
Q psy5021 76 KYMINIIDTPGHVD-------FTIEVERSLRVLDGAVIIICASS 112 (1021)
Q Consensus 76 ~~~i~liDtPG~~~-------f~~~~~~~l~~~D~~ilvvda~~ 112 (1021)
...+.++|.||.+. ...+...-++.+|+.|.|||+.+
T Consensus 74 ~~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 74 PAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence 24688999999642 34678899999999999999975
|
| >d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.65 E-value=2.9e-05 Score=65.92 Aligned_cols=81 Identities=15% Similarity=0.360 Sum_probs=72.0
Q ss_pred eEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCC-eeEEEEEEEEecccccceeccCceEEEEecccCccCcccc
Q psy5021 854 LMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQ-TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERG 932 (1021)
Q Consensus 854 ~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~-~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 932 (1021)
+..|.++|+++..|.|+.++|.+|.++.+..+.+.-.+. ....++.|+....+++.++..|..||+.|.+ ..+++.|
T Consensus 8 ~A~V~~vF~~~k~~~iAGc~V~~G~i~~~~~vrv~R~~~~I~~G~i~sLk~~K~~V~eV~~G~ECGi~l~~--~~d~~~G 85 (99)
T d1d1na_ 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKN--FNDIKEG 85 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTT--CSSCSSC
T ss_pred EEEEEEEEEcCCCcEEEEEEEEeCeEccCCceEEecCCEEEEEeEEeeecccccccCEecCCeEEEEEecC--ccCCCCC
Confidence 466888999998999999999999999999999985444 3467999999999999999999999999986 5689999
Q ss_pred eEEe
Q psy5021 933 QVLA 936 (1021)
Q Consensus 933 ~vl~ 936 (1021)
|+|-
T Consensus 86 D~ie 89 (99)
T d1d1na_ 86 DVIE 89 (99)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9994
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.23 E-value=0.00022 Score=62.67 Aligned_cols=70 Identities=26% Similarity=0.167 Sum_probs=55.1
Q ss_pred CCCceEEEEEEEeecCC--------CceEEEEEEEeeEEecCCEEEeCCCcee------------eEeceEEEeecCCee
Q psy5021 294 NSNKFVSLVFKIFHDPF--------LGSLSFIRIYSGFIKVGDLVYNSTKKVK------------EKIFRILRMFANSKK 353 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~--------~g~~~~~RV~sG~l~~gd~v~~~~~~~~------------~~i~~i~~~~g~~~~ 353 (1021)
.+.|++.+|...|.... +|.++.++|.+|+|+.||+|...+.++. .+|..|... ..
T Consensus 3 ~~~~p~~~V~R~F~vn~pgt~~~~~~G~VvtGtv~~G~ikvGD~i~i~P~~~~~~~~~~~~~~~~t~V~sI~~~----~~ 78 (114)
T d2qn6a1 3 LSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFG----DE 78 (114)
T ss_dssp TTSCCEEEEEEEECCCCTTCBGGGCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TE
T ss_pred CCCCceEEEeccccccCCCCCcccccceEEEEEEccccEEeCCEEEEcCCCccccCceeeeeecceEEEEEEEC----Cc
Confidence 35788999999886533 5669999999999999999998765532 467766533 35
Q ss_pred ccccccCCCEEEEe
Q psy5021 354 DINDAHFGDIVVIV 367 (1021)
Q Consensus 354 ~v~~a~aGdIv~i~ 367 (1021)
++++|.||+-++|.
T Consensus 79 ~v~~A~aG~~V~i~ 92 (114)
T d2qn6a1 79 EFKEAKPGGLVAIG 92 (114)
T ss_dssp EESEECSSSCEEEE
T ss_pred ccCEEeCCCEEEEE
Confidence 68999999999994
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.14 E-value=0.00041 Score=71.94 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=53.9
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+.+...+..+|++|.|+||..+......+...+++ +.| .|+|+||+|+++.+ .. ++..++++..+
T Consensus 4 ka~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp-~IlVlNK~DLv~~~-~~----~~w~~~f~~~~---- 71 (273)
T d1puja_ 4 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKP-RIMLLNKADKADAA-VT----QQWKEHFENQG---- 71 (273)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSC-EEEEEECGGGSCHH-HH----HHHHHHHHTTT----
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCC-eEEEEECccCCchH-HH----HHHHHHHHhcC----
Confidence 34566677789999999999999988766655444442 566 88899999999732 12 22333333333
Q ss_pred ceEEEEeccccc
Q psy5021 806 NTKIVIGSALLA 817 (1021)
Q Consensus 806 ~~~ii~iSa~~~ 817 (1021)
...+++|+.++
T Consensus 72 -~~~i~isa~~~ 82 (273)
T d1puja_ 72 -IRSLSINSVNG 82 (273)
T ss_dssp -CCEEECCTTTC
T ss_pred -CccceeecccC
Confidence 35788899865
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.13 E-value=6.3e-05 Score=74.94 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
+..+++|++|+|||||+|+|+.
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~ 119 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISP 119 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCccHHHHHHhhcc
Confidence 3467999999999999999963
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.06 E-value=0.0022 Score=53.90 Aligned_cols=84 Identities=25% Similarity=0.333 Sum_probs=67.3
Q ss_pred CCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEe------------cccccceeccCceE
Q psy5021 850 DKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEM------------FKKTLDEGLAGENV 917 (1021)
Q Consensus 850 ~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~------------~~~~~~~a~~G~~v 917 (1021)
|.|.+..|-++...+|.|.+++-.|.+|+|++||.+.++.....++++|+++.. ....+++|.|..-|
T Consensus 2 d~~a~G~VlEs~~dkg~G~~atviv~~GtLk~GD~iv~g~~~G~i~~~iraLl~p~pl~emr~~~~~~~~vke~~aa~gV 81 (101)
T d1g7sa1 2 DSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGI 81 (101)
T ss_dssp TSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEE
T ss_pred CCCcEEEEEEEEEcCCCCeeEEEEEEcCEEccCCEEEEecCcCCEEEEeecccCCcchhhhhccccCCeECcEEeCCCce
Confidence 567889999999999999999999999999999999998766678888998864 23478888888777
Q ss_pred EEEecccCccCcccceEE
Q psy5021 918 GILLRSVKREEVERGQVL 935 (1021)
Q Consensus 918 ~l~l~~~~~~~i~~G~vl 935 (1021)
.+...+ .+++-.|+-+
T Consensus 82 kI~a~g--Le~v~aG~~~ 97 (101)
T d1g7sa1 82 KIVAPG--IDDVMAGSPL 97 (101)
T ss_dssp EEECSS--CTTBCTTCEE
T ss_pred EEEcCC--CCcCCCCCEE
Confidence 666555 3444467654
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.02 E-value=0.0014 Score=58.67 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=52.5
Q ss_pred ceEEEE-EEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC---ccccCCeeccC
Q psy5021 312 GSLSFI-RIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK---ESSTGDTLCSL 381 (1021)
Q Consensus 312 g~~~~~-RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~---~~~~gdtl~~~ 381 (1021)
+...++ ||.+|+|++||.|...+.+...+|..|. .+ ..++++|.+|+-|+| .|.. ++..||.|++.
T Consensus 19 ~p~ivgv~V~sG~ik~G~~l~~~p~~~~g~VksIq-~~---~~~v~~A~~G~~Vai~I~g~~~gr~i~~gD~L~s~ 90 (128)
T d1g7sa2 19 KPAIGGVEVLTGVIRQGYPLMNDDGETVGTVESMQ-DK---GENLKSASRGQKVAMAIKDAVYGKTIHEGDTLYVD 90 (128)
T ss_dssp SSEEEEEEEEEEEEETTCEEECTTSCEEEEEEEEE-ET---TEEESEEETTCCEEEEEETCCBTTTBCTTCEEEEC
T ss_pred CCeEEEEEEeeeeecCCCEEEECCCCceEEEEEEE-EC---CccccEEcCCCEEEEEEcCcccCCCCCCCCEEEEe
Confidence 455554 9999999999999999888877887774 22 367999999999998 3433 57889999864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.01 E-value=0.00091 Score=65.56 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=68.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccCh---HHH------hhhCceeeeeee-----EEEee-
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWM---QQE------QERGITITSASV-----SIFWE- 71 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~---~~e------~~rgiTi~~~~~-----~~~~~- 71 (1021)
+-+.|+++|+.|+||||.+-.|......- |. .-+--..|.. ..| +.-|+.+..... ...+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~---g~-kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~ 80 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GK-KVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDA 80 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TC-CEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC---CC-cEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHH
Confidence 34678999999999999998886432110 10 0011122321 111 112333221100 00000
Q ss_pred ---cccCceeEEEEcCCCCCCcHHH----HHHH---hh-----ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEE
Q psy5021 72 ---VNKFKYMINIIDTPGHVDFTIE----VERS---LR-----VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFV 136 (1021)
Q Consensus 72 ---~~~~~~~i~liDtPG~~~f~~~----~~~~---l~-----~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iivi 136 (1021)
....++.+.||||||-..+..+ .... .. ..+-.+||+|++.+.. ......+.....++. =+++
T Consensus 81 ~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~~~~~-~lI~ 158 (207)
T d1okkd2 81 VQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN-GLEQAKKFHEAVGLT-GVIV 158 (207)
T ss_dssp HHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH-HHHHHHHHHHHHCCS-EEEE
T ss_pred HHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCch-HHHHHHHhhhccCCc-eEEE
Confidence 0012578999999996544333 2222 21 2367899999998753 333444444444544 4578
Q ss_pred eCcCCC
Q psy5021 137 NKMDRI 142 (1021)
Q Consensus 137 NK~D~~ 142 (1021)
+|+|-.
T Consensus 159 TKlDet 164 (207)
T d1okkd2 159 TKLDGT 164 (207)
T ss_dssp ECTTSS
T ss_pred eccCCC
Confidence 999964
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.00 E-value=0.00058 Score=68.85 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=56.4
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCCCC
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIGAN 145 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~~~ 145 (1021)
..|.+.++|||+... ..+..++..+|.+++|+.+...-..++.+.++.+.+.++|++ +++||.|+...+
T Consensus 110 ~~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~~~~ 179 (237)
T d1g3qa_ 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD 179 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC
T ss_pred hcCCEEEEccccccc--ccchhhhhhhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhcccccccch
Confidence 467899999998754 677888999999999998876555667778888888999987 789999876544
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.0012 Score=65.86 Aligned_cols=145 Identities=18% Similarity=0.140 Sum_probs=74.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc--cCCcccccChHHHhhh--CceeeeeeeEEEeec---------
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTTITDWMQQEQER--GITITSASVSIFWEV--------- 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~--~~~~~~~d~~~~e~~r--giTi~~~~~~~~~~~--------- 72 (1021)
++|.-..|.|-.|||||||+++|+...... +.+=+ +-|..-.|........ -..+....++.....
T Consensus 1 ~~iPv~iitGFLGaGKTTll~~lL~~~~~~-riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~ 79 (222)
T d1nija1 1 NPIAVTLLTGFLGAGKTTLLRHILNEQHGY-KIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 79 (222)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHSCCCC-CEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred CCCCEEEEeeCCCCCHHHHHHHHHhcCCCC-cEEEEEecccchhhhhhhhcccccceEEecCCcceeccchhHHHHHHHH
Confidence 357788999999999999999999753211 11000 1111111110000000 011122222221110
Q ss_pred ------ccCceeEEEEcCCCCCCcHHHHHH--------HhhccCeEEEEEeCCCCCchhHH-H-HHHHHhhcCCCEEEEE
Q psy5021 73 ------NKFKYMINIIDTPGHVDFTIEVER--------SLRVLDGAVIIICASSGIQPQTE-T-VWFQSQKYKVPKMIFV 136 (1021)
Q Consensus 73 ------~~~~~~i~liDtPG~~~f~~~~~~--------~l~~~D~~ilvvda~~g~~~~t~-~-~~~~~~~~~~p~iivi 136 (1021)
.+......+|-|.|..+-..-... ..-..|++|.|||+..+...... . ...|+.. .=++++
T Consensus 80 ~~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~---AD~ivl 156 (222)
T d1nija1 80 LDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADRILL 156 (222)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHT---CSEEEE
T ss_pred HHHHhhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHh---CCcccc
Confidence 012345689999998765433221 12246889999999876432221 1 1133333 348999
Q ss_pred eCcCCCCCCHHHHHHHHHH
Q psy5021 137 NKMDRIGANYNNCIIDIKK 155 (1021)
Q Consensus 137 NK~D~~~~~~~~~~~~i~~ 155 (1021)
||+|+.. +.++..+.++.
T Consensus 157 NK~Dl~~-~~~~~~~~l~~ 174 (222)
T d1nija1 157 TKTDVAG-EAEKLHERLAR 174 (222)
T ss_dssp ECTTTCS-CTHHHHHHHHH
T ss_pred ccccccc-HHHHHHHHHHH
Confidence 9999964 34444444443
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.99 E-value=0.0024 Score=53.70 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=69.9
Q ss_pred CCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc--eeeEeceEEEe--------ecCCeeccccccCCCEE
Q psy5021 295 SNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK--VKEKIFRILRM--------FANSKKDINDAHFGDIV 364 (1021)
Q Consensus 295 ~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~--------~g~~~~~v~~a~aGdIv 364 (1021)
++|..+.|..+..|++.|.++-+-|++|+|+.||.+...... ...+|..++.+ ..+....+++|.|-.=+
T Consensus 2 d~~a~G~VlEs~~dkg~G~~atviv~~GtLk~GD~iv~g~~~G~i~~~iraLl~p~pl~emr~~~~~~~~vke~~aa~gV 81 (101)
T d1g7sa1 2 DSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGI 81 (101)
T ss_dssp TSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEE
T ss_pred CCCcEEEEEEEEEcCCCCeeEEEEEEcCEEccCCEEEEecCcCCEEEEeecccCCcchhhhhccccCCeECcEEeCCCce
Confidence 678899999999999999999999999999999999976544 34567777653 45677889999988877
Q ss_pred EEe--cCCccccCCeec
Q psy5021 365 VIV--GLKESSTGDTLC 379 (1021)
Q Consensus 365 ~i~--gl~~~~~gdtl~ 379 (1021)
-|. ||+.+..|+.|.
T Consensus 82 kI~a~gLe~v~aG~~~~ 98 (101)
T d1g7sa1 82 KIVAPGIDDVMAGSPLR 98 (101)
T ss_dssp EEECSSCTTBCTTCEEE
T ss_pred EEEcCCCCcCCCCCEEE
Confidence 775 898888888763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.0011 Score=65.50 Aligned_cols=85 Identities=24% Similarity=0.197 Sum_probs=57.0
Q ss_pred hhhCCEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEe
Q psy5021 735 AAQMDGAILVCSAVDGPM--PQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIG 812 (1021)
Q Consensus 735 ~~~aD~ailVvDa~~g~~--~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~i 812 (1021)
+.+.|.+++|+++.++.+ ..-.+.|-.+...|++ .+||+||+|+.+++ ..+.+......+ .. + .+++.+
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~-pvIvlnK~DL~~~~-~~~~~~~~~~~~-~~-~-----~~v~~v 78 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELE-TVMVINKMDLYDED-DLRKVRELEEIY-SG-L-----YPIVKT 78 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHH-HHHHHHHHHHHH-TT-T-----SCEEEC
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCC-EEEEEeCcccCCHH-HHHHHHHhhccc-cc-c-----eeEEEe
Confidence 357899999999876544 3445677888889999 67789999998733 223222222222 11 1 468999
Q ss_pred cccccccCCCCCccCcchHHHHHHhhh
Q psy5021 813 SALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 813 Sa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
|++++. +++.|.+.|.
T Consensus 79 Sa~~~~-----------g~~~L~~~l~ 94 (225)
T d1u0la2 79 SAKTGM-----------GIEELKEYLK 94 (225)
T ss_dssp CTTTCT-----------THHHHHHHHS
T ss_pred ccccch-----------hHhhHHHHhc
Confidence 999773 7777777663
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.00059 Score=67.21 Aligned_cols=133 Identities=20% Similarity=0.132 Sum_probs=70.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChH---HHh------hhCceeeeeeeEEEe----
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQ---QEQ------ERGITITSASVSIFW---- 70 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~---~e~------~rgiTi~~~~~~~~~---- 70 (1021)
+..+...|+++|+.|+||||.+-.|..... ..|. .-+-..+|+.. .|| .-|+.+....-.-..
T Consensus 7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~---~~~~-kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~ 82 (213)
T d1vmaa2 7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGK-SVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVA 82 (213)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC-CEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHH---HCCC-ceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHH
Confidence 455667889999999999999888763321 0000 00112234311 111 223333211100000
Q ss_pred -e----cccCceeEEEEcCCCCCCcHHHHHHHh----hc--------cCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE
Q psy5021 71 -E----VNKFKYMINIIDTPGHVDFTIEVERSL----RV--------LDGAVIIICASSGIQPQTETVWFQSQKYKVPKM 133 (1021)
Q Consensus 71 -~----~~~~~~~i~liDtPG~~~f~~~~~~~l----~~--------~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i 133 (1021)
. ....++.+.||||||-..+..+....+ +. .+-.+||+|++.+.. ......+.-...+ +-=
T Consensus 83 ~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~~~-~~~ 160 (213)
T d1vmaa2 83 FDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQN-GLVQAKIFKEAVN-VTG 160 (213)
T ss_dssp HHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHH-HHHHHHHHHHHSC-CCE
T ss_pred HHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcc-hhhhhhhhccccC-Cce
Confidence 0 001357899999999766655544332 11 356899999987632 2233333333344 345
Q ss_pred EEEeCcCCC
Q psy5021 134 IFVNKMDRI 142 (1021)
Q Consensus 134 iviNK~D~~ 142 (1021)
++++|+|-.
T Consensus 161 lI~TKlDe~ 169 (213)
T d1vmaa2 161 IILTKLDGT 169 (213)
T ss_dssp EEEECGGGC
T ss_pred EEEecccCC
Confidence 678999974
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.96 E-value=0.00093 Score=65.63 Aligned_cols=133 Identities=23% Similarity=0.180 Sum_probs=66.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChH---HH------hhhCceeeeeeeEEEeec--
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQ---QE------QERGITITSASVSIFWEV-- 72 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~---~e------~~rgiTi~~~~~~~~~~~-- 72 (1021)
+.+...-|+++|+.|+||||.+-.|.+... ..|. .-+--..|+.. .| ..-|+.+......-....
T Consensus 8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~---~~g~-kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~ 83 (211)
T d1j8yf2 8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYK---KKGF-KVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIA 83 (211)
T ss_dssp CSSSSEEEEEECSCCC----HHHHHHHHHH---HTTC-CEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHH---HCCC-ceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHH
Confidence 344456788999999999999888864321 1010 00112233311 11 122333321111000000
Q ss_pred -------ccCceeEEEEcCCCCCCcH------HHHHHH--hhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEe
Q psy5021 73 -------NKFKYMINIIDTPGHVDFT------IEVERS--LRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVN 137 (1021)
Q Consensus 73 -------~~~~~~i~liDtPG~~~f~------~~~~~~--l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviN 137 (1021)
...++.+.||||||...+. .+.... ....+-.++|+|++.+... ....+......++. =++++
T Consensus 84 ~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~-~~~~~~~~~~~~~~-~lI~T 161 (211)
T d1j8yf2 84 KRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA-YDLASKFNQASKIG-TIIIT 161 (211)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH-HHHHHHHHHHCTTE-EEEEE
T ss_pred HHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcch-HHHHhhhhcccCcc-eEEEe
Confidence 0135789999999954332 222222 2235788999999987543 33444444444543 45699
Q ss_pred CcCCC
Q psy5021 138 KMDRI 142 (1021)
Q Consensus 138 K~D~~ 142 (1021)
|+|..
T Consensus 162 KlDet 166 (211)
T d1j8yf2 162 KMDGT 166 (211)
T ss_dssp CTTSC
T ss_pred cccCC
Confidence 99974
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.91 E-value=0.00058 Score=67.77 Aligned_cols=76 Identities=18% Similarity=0.276 Sum_probs=52.4
Q ss_pred hhCCEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEec
Q psy5021 736 AQMDGAILVCSAVDGPM--PQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGS 813 (1021)
Q Consensus 736 ~~aD~ailVvDa~~g~~--~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iS 813 (1021)
.+.|.+++|+++.++.+ ..-...+-.+...|++ .+||+||+|+.++++..+.+ ..+.+....+|+ +++.+|
T Consensus 9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~-pvIvlnK~DL~~~~~~~~~~-~~~~~~y~~~g~-----~v~~~S 81 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQ-PIICITKMDLIEDQDTEDTI-QAYAEDYRNIGY-----DVYLTS 81 (231)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCE-EEEEEECGGGCCCHHHHHHH-HHHHHHHHHHTC-----CEEECC
T ss_pred cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCC-EEEEEecccccccHHHHHHH-HHHHHHHhhccc-----cceeee
Confidence 57899999999876543 4456677778888999 67789999998754332222 233333344554 689999
Q ss_pred ccccc
Q psy5021 814 ALLAL 818 (1021)
Q Consensus 814 a~~~~ 818 (1021)
+.++.
T Consensus 82 a~~~~ 86 (231)
T d1t9ha2 82 SKDQD 86 (231)
T ss_dssp HHHHT
T ss_pred cCChh
Confidence 99763
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.76 E-value=0.0018 Score=63.48 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=40.0
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHh------hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSL------RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l------~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
++.+.||||||......+....+ ...|-.++|+|+..+-... ..........++ -=++++|+|-.
T Consensus 92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~-~~~~~f~~~~~~-~~~I~TKlDe~ 162 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL-SVARAFDEKVGV-TGLVLTKLDGD 162 (207)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH-HHHHHHHHHTCC-CEEEEECGGGC
T ss_pred cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHH-HHHHHHHhhCCC-CeeEEeecCcc
Confidence 56899999999644433332222 3458999999998774332 222222233343 34778999964
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.76 E-value=0.0018 Score=63.94 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=35.5
Q ss_pred hhccCeEEEEEeCCCC-Cc-hhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 98 LRVLDGAVIIICASSG-IQ-PQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 98 l~~~D~~ilvvda~~g-~~-~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
....|.+++|+.+.++ .. ....+.+-.+...++|.++|+||+|+..
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~ 55 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 55 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCC
Confidence 3567999999988764 22 3345666777889999999999999964
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.59 E-value=0.0097 Score=59.20 Aligned_cols=87 Identities=8% Similarity=0.140 Sum_probs=60.2
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCCCCHHHHHHHHH
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNNCIIDIK 154 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~ 154 (1021)
.|.+.++|||+... ......+..+|.+++|+++...-.......+..+.+.+.+.+ +++||.+.. ..+...+++.
T Consensus 109 ~~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~--~~~~~~~~i~ 184 (232)
T d1hyqa_ 109 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL--GIEMAKNEIE 184 (232)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT--THHHHHHHHH
T ss_pred ccceeeeccccccc--chhHHHhhhhheeeeeccccccchhhhhhhhhhhhhcccccccccccccccc--cccchhhhHH
Confidence 57789999999875 566677889999999998754333344455566667787765 578998753 2344567788
Q ss_pred HHhCCceeeeeee
Q psy5021 155 KKFNCIVLPINFN 167 (1021)
Q Consensus 155 ~~l~~~~~~~~~p 167 (1021)
+.++.+... .+|
T Consensus 185 ~~~~~~~~~-~IP 196 (232)
T d1hyqa_ 185 AILEAKVIG-LIP 196 (232)
T ss_dssp HHTTSCEEE-EEE
T ss_pred hhcCCeEEE-ECC
Confidence 888765432 345
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.0032 Score=61.56 Aligned_cols=129 Identities=17% Similarity=0.107 Sum_probs=66.9
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChH---HHh------hhCceeeeeeeEEEeec------
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQ---QEQ------ERGITITSASVSIFWEV------ 72 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~---~e~------~rgiTi~~~~~~~~~~~------ 72 (1021)
..-|+++|+.|+||||.+-.|...... .|. .-+--.+|... .|| .-|+.+....-.-.+..
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~---~g~-kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~ 84 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQ---QGK-SVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 84 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHT---TTC-CEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH---CCC-cEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHH
Confidence 456889999999999999998643211 010 00112233311 121 12333321110000000
Q ss_pred ---ccCceeEEEEcCCCCCCcHHHHHH-------Hhh-----ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEe
Q psy5021 73 ---NKFKYMINIIDTPGHVDFTIEVER-------SLR-----VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVN 137 (1021)
Q Consensus 73 ---~~~~~~i~liDtPG~~~f~~~~~~-------~l~-----~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviN 137 (1021)
...++.+.||||||......+... .+. ..+-.++|+|+..+.... ....+.-...+ +-=++++
T Consensus 85 ~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~-~~~~~~~~~~~-~~~lIlT 162 (211)
T d2qy9a2 85 QAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-SQAKLFHEAVG-LTGITLT 162 (211)
T ss_dssp HHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHH-HHHHHHHHHSC-CCEEEEE
T ss_pred HHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchH-HHHhhhhhccC-CceEEEe
Confidence 013567999999995443332222 222 135789999998774332 33333333344 3457789
Q ss_pred CcCCC
Q psy5021 138 KMDRI 142 (1021)
Q Consensus 138 K~D~~ 142 (1021)
|+|-.
T Consensus 163 KlDe~ 167 (211)
T d2qy9a2 163 KLDGT 167 (211)
T ss_dssp CCTTC
T ss_pred ecCCC
Confidence 99974
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.0077 Score=59.76 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=17.4
Q ss_pred eeeeeeeccchhhhhhhccc
Q psy5021 655 GTIGHVDHGKTTLTAALTKV 674 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~ 674 (1021)
.+.||-+||||||+++|+..
T Consensus 7 iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 7 LLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEESSSSSCHHHHHHHHHS
T ss_pred EEeeCCCCCHHHHHHHHHhc
Confidence 46788999999999999864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.78 E-value=0.0035 Score=61.50 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=35.2
Q ss_pred HhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCC
Q psy5021 97 SLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 97 ~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~ 141 (1021)
.+...++.++++|+..+...+-......+...+.+++++.++++.
T Consensus 80 ~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T d1bifa1 80 FLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD 124 (213)
T ss_dssp HHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCC
T ss_pred HHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccH
Confidence 344566778899999887777777777888889998888888863
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.0071 Score=59.03 Aligned_cols=126 Identities=19% Similarity=0.171 Sum_probs=66.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCc---------hhhhhcCceEeeeEEE-------------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNA---------PEEKERGITISTSHVE------------- 708 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~---------~~e~~~G~Ti~~~~~~------------- 708 (1021)
......+|.+++||||.+-+|....... +....-. .+|.. ..-+.-|+.+......
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~~-g~kV~li-t~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA-AGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEE-CCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEE-ecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 3456789999999999999886422111 1111100 11211 1112223332111100
Q ss_pred EeeCCeEEEEEecCChhhhHHHH-------HHHhh-----hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEee
Q psy5021 709 YESENKHYAHVDCPGHADYIKNM-------ITGAA-----QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNK 776 (1021)
Q Consensus 709 ~~~~~~~i~liDtpG~~~~~~~~-------~~~~~-----~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK 776 (1021)
....+..+.||||||-..+-... ..... ..+-.+||+||+.+.. ...+....-...++..+ ++||
T Consensus 87 a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~~~~~~l--IlTK 163 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN-AVSQAKLFHEAVGLTGI--TLTK 163 (211)
T ss_dssp HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHH-HHHHHHHHHHHSCCCEE--EEEC
T ss_pred HHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcc-hHHHHhhhhhccCCceE--EEee
Confidence 01235678999999943332222 22222 2478999999987532 23334445566788844 4699
Q ss_pred ccccc
Q psy5021 777 ADCVQ 781 (1021)
Q Consensus 777 ~Dl~~ 781 (1021)
+|-..
T Consensus 164 lDe~~ 168 (211)
T d2qy9a2 164 LDGTA 168 (211)
T ss_dssp CTTCT
T ss_pred cCCCC
Confidence 99654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.71 E-value=0.0069 Score=59.28 Aligned_cols=67 Identities=24% Similarity=0.308 Sum_probs=41.1
Q ss_pred CCeEEEEEecCChhhhHHHHHHH-------hh-----hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccc
Q psy5021 712 ENKHYAHVDCPGHADYIKNMITG-------AA-----QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADC 779 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~~~~~~~-------~~-----~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl 779 (1021)
+++.+.||||||-..+-.+.+.. .. ..+-.+||+||+.+. ....+....-...++..+ ++||+|-
T Consensus 92 ~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~~~~~~~~~~l--I~TKlDe 168 (213)
T d1vmaa2 92 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ-NGLVQAKIFKEAVNVTGI--ILTKLDG 168 (213)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH-HHHHHHHHHHHHSCCCEE--EEECGGG
T ss_pred cCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc-chhhhhhhhccccCCceE--EEecccC
Confidence 35679999999943332222222 11 147799999998642 222334445566788854 4699996
Q ss_pred cc
Q psy5021 780 VQ 781 (1021)
Q Consensus 780 ~~ 781 (1021)
..
T Consensus 169 ~~ 170 (213)
T d1vmaa2 169 TA 170 (213)
T ss_dssp CS
T ss_pred CC
Confidence 53
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.68 E-value=0.0054 Score=59.81 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=42.3
Q ss_pred CeEEEEEecCChhhh----HHHHHHH---h-----hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 713 NKHYAHVDCPGHADY----IKNMITG---A-----AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 713 ~~~i~liDtpG~~~~----~~~~~~~---~-----~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
+..+.|+||||-..+ +..+... . ...+-.+||+||+.+.. ...+........++..+ ++||+|-.
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~~~~~~l--I~TKlDet 164 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN-GLEQAKKFHEAVGLTGV--IVTKLDGT 164 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH-HHHHHHHHHHHHCCSEE--EEECTTSS
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCch-HHHHHHHhhhccCCceE--EEeccCCC
Confidence 568999999994332 2222222 1 13578999999998753 33444455566788854 56999965
Q ss_pred c
Q psy5021 781 Q 781 (1021)
Q Consensus 781 ~ 781 (1021)
.
T Consensus 165 ~ 165 (207)
T d1okkd2 165 A 165 (207)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=95.32 E-value=0.028 Score=57.29 Aligned_cols=85 Identities=11% Similarity=-0.054 Sum_probs=51.3
Q ss_pred ceeEEEEcCCCCC-CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHh----hcCCCEE-EEEeCcCCCCCCHHHH
Q psy5021 76 KYMINIIDTPGHV-DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ----KYKVPKM-IFVNKMDRIGANYNNC 149 (1021)
Q Consensus 76 ~~~i~liDtPG~~-~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~----~~~~p~i-iviNK~D~~~~~~~~~ 149 (1021)
.+.+.++|||+.. ........+...+|.+++++++............+.+. ..+.++. +++|+.+... ..+.
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~--~~~~ 192 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN--EYEL 192 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC--CHHH
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccchhhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC--ccch
Confidence 5789999999764 33334555667899999988775321122223322222 2333333 6789987643 3456
Q ss_pred HHHHHHHhCCcee
Q psy5021 150 IIDIKKKFNCIVL 162 (1021)
Q Consensus 150 ~~~i~~~l~~~~~ 162 (1021)
++++.+.++...+
T Consensus 193 ~~~~~~~~~~~~~ 205 (269)
T d1cp2a_ 193 LDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHTCCEE
T ss_pred hhhhHhhcCCeEE
Confidence 7778888876543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.25 E-value=0.0077 Score=58.76 Aligned_cols=67 Identities=22% Similarity=0.267 Sum_probs=40.7
Q ss_pred CCeEEEEEecCChhhh----HHHHHHH--hhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 712 ENKHYAHVDCPGHADY----IKNMITG--AAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~----~~~~~~~--~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
.+..+.||||||-..+ +..+... ....|-.++|+|++.+.... ..........++..+ ++||+|-..
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~-~~~~~f~~~~~~~~~--I~TKlDe~~ 163 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL-SVARAFDEKVGVTGL--VLTKLDGDA 163 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH-HHHHHHHHHTCCCEE--EEECGGGCS
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHH-HHHHHHHhhCCCCee--EEeecCccc
Confidence 4568899999993332 2222222 34679999999998753221 122223345688753 569999654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.0056 Score=57.52 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHH
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
++.|+|+|.+|||||||+++|+.
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.79 E-value=0.0069 Score=57.71 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=23.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSG 33 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~ 33 (1021)
..|+|+|.|.+|+|||||+++|....+
T Consensus 6 ~~K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 6 FAKTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 368999999999999999999976554
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.76 E-value=0.013 Score=57.10 Aligned_cols=67 Identities=22% Similarity=0.246 Sum_probs=42.1
Q ss_pred CCeEEEEEecCChhhh------HHHHHH--HhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 712 ENKHYAHVDCPGHADY------IKNMIT--GAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~------~~~~~~--~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
.+..+.||||||...+ +..+.. .....+-.+||+|++.+... ...........++..+ ++||.|...
T Consensus 93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~-~~~~~~~~~~~~~~~l--I~TKlDet~ 167 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA-YDLASKFNQASKIGTI--IITKMDGTA 167 (211)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH-HHHHHHHHHHCTTEEE--EEECTTSCS
T ss_pred cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcch-HHHHhhhhcccCcceE--EEecccCCC
Confidence 4568999999994222 222222 22356889999999876532 2334444455677643 479999764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.55 E-value=0.017 Score=54.54 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=54.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..-|.++|.+||||||++..|+...+... +..+ .. .-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~~~~~~-------------------------------i~~D----~~-------~~ 50 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH-------------------------------VNRD----TL-------GS 50 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGGGTCEE-------------------------------EEHH----HH-------CS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCCEE-------------------------------EchH----HH-------HH
Confidence 455789999999999999999854322110 0000 00 00
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMD 140 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D 140 (1021)
.......+..++.. +..+|+|++.....+-...+..++..+.++.++.=..|
T Consensus 51 ~~~~~~~~~~~l~~--g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~ 102 (172)
T d1yj5a2 51 WQRCVSSCQAALRQ--GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 102 (172)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHC--CCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 00122334444443 45577899987777777777888889999877653333
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=93.90 E-value=0.23 Score=50.64 Aligned_cols=86 Identities=10% Similarity=0.005 Sum_probs=49.8
Q ss_pred CceeEEEEcCCCCCCc-HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHH----hhcCCCEE-EEEeCcCCCCCCHHH
Q psy5021 75 FKYMINIIDTPGHVDF-TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQS----QKYKVPKM-IFVNKMDRIGANYNN 148 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f-~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~----~~~~~p~i-iviNK~D~~~~~~~~ 148 (1021)
..|.+.+||||+...- ......+...+|.+++++.....-.......++.+ ...++++. +++|+.+.. ...+
T Consensus 117 ~~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~--~~~~ 194 (289)
T d2afhe1 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD--REDE 194 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--THHH
T ss_pred ccCCeEeeccCCccCHHHHHHHHHhhccceeecccchhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcch--hhHH
Confidence 4688999999987532 22333344678888888765421111122222222 22344443 678998743 3456
Q ss_pred HHHHHHHHhCCcee
Q psy5021 149 CIIDIKKKFNCIVL 162 (1021)
Q Consensus 149 ~~~~i~~~l~~~~~ 162 (1021)
..+++.+.++...+
T Consensus 195 ~~~~~~~~~g~~vl 208 (289)
T d2afhe1 195 LIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHTSCEE
T ss_pred HHHHHHHHcCCeEE
Confidence 77888888886543
|
| >d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.77 E-value=0.043 Score=45.92 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=59.5
Q ss_pred EEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceee---EeceEEEeecCCeeccccccCCCEEEEe--cCCcccc
Q psy5021 300 SLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKE---KIFRILRMFANSKKDINDAHFGDIVVIV--GLKESST 374 (1021)
Q Consensus 300 ~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~---~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl~~~~~ 374 (1021)
|.|-++|.....|.+|-+||.+|.++++..+...+.+... +|..|. +....++++..|.=|+|. +..+++.
T Consensus 9 A~V~~vF~~~k~~~iAGc~V~~G~i~~~~~vrv~R~~~~I~~G~i~sLk----~~K~~V~eV~~G~ECGi~l~~~~d~~~ 84 (99)
T d1d1na_ 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLK----RYKDDVREVAQGYECGLTIKNFNDIKE 84 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEE----CSSSCCSCCBTTCEEEEECTTCSSCSS
T ss_pred EEEEEEEEcCCCcEEEEEEEEeCeEccCCceEEecCCEEEEEeEEeeec----ccccccCEecCCeEEEEEecCccCCCC
Confidence 5566666666779999999999999999999988877543 455553 335679999999999994 4456889
Q ss_pred CCeec
Q psy5021 375 GDTLC 379 (1021)
Q Consensus 375 gdtl~ 379 (1021)
||+|-
T Consensus 85 GD~ie 89 (99)
T d1d1na_ 85 GDVIE 89 (99)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 99884
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.13 Score=49.97 Aligned_cols=87 Identities=7% Similarity=-0.028 Sum_probs=61.9
Q ss_pred ceeEEEEcCCCCCCc-----HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEE-EEeCcCCCCCCHHHH
Q psy5021 76 KYMINIIDTPGHVDF-----TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYNNC 149 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f-----~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~~~~~~~ 149 (1021)
.+.+.++|+|+.... ...........+.+++|++...+....+....+.+...+.+++- ++|+.|.......+.
T Consensus 108 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~ 187 (224)
T d1byia_ 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEY 187 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHH
T ss_pred ccceEeecccccccccccccchhhcccccccceeeEEEeeccchhHHHHHHHHHHhccCCccEEEEEeCcCCCchHHHHH
Confidence 467899999886422 11222333455778888888877666666666777777777654 689999877778888
Q ss_pred HHHHHHHhCCcee
Q psy5021 150 IIDIKKKFNCIVL 162 (1021)
Q Consensus 150 ~~~i~~~l~~~~~ 162 (1021)
++.+.+.++.+.+
T Consensus 188 ~~~l~~~~gi~vl 200 (224)
T d1byia_ 188 MTTLTRMIPAPLL 200 (224)
T ss_dssp HHHHHHHSSSCEE
T ss_pred HHHHHHHhCCCEE
Confidence 9999999987654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.30 E-value=0.02 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
|-|+|+|..|||||||+++|+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4679999999999999999974
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.73 E-value=0.023 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=21.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHc
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYS 32 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~ 32 (1021)
..||+|+|.+|+||||++..|...-
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999996543
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=92.40 E-value=0.041 Score=57.51 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
+||.|.|..|+|||||+++|+.
T Consensus 167 ~nili~G~tgSGKTT~l~al~~ 188 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIME 188 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CCEEEEeeccccchHHHHHHhh
Confidence 7899999999999999999964
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=92.15 E-value=0.037 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERILFY 31 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~ 31 (1021)
+|+|+|++|+|||||+..++..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhc
Confidence 5999999999999999999753
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.02 E-value=0.013 Score=57.08 Aligned_cols=46 Identities=11% Similarity=0.006 Sum_probs=31.3
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKAD 778 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D 778 (1021)
...+...+..++++|++.....+-.....++...+.+ .+++.++++
T Consensus 78 ~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~ 123 (213)
T d1bifa1 78 RKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYK-TFFVESICV 123 (213)
T ss_dssp HHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCE-EEEEEECCC
T ss_pred HHHHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCe-EEEEEeecc
Confidence 3444556667788999876665555666777778877 666667765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.01 E-value=0.036 Score=51.90 Aligned_cols=24 Identities=33% Similarity=0.166 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHH
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFY 31 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~ 31 (1021)
--||+|.|++|+||||+++.|...
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999999654
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.94 E-value=0.11 Score=52.83 Aligned_cols=89 Identities=16% Similarity=0.085 Sum_probs=49.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.++--|+|+|...+|||||+|.|+........ |. + .....+||-+... .. .++.+..+.++||.
T Consensus 30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~-~~-----~-----~~~~T~Giw~~~~----~~-~~~~~~~~~~lDte 93 (277)
T d1f5na2 30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSL-GS-----T-----VQSHTKGIWMWCV----PH-PKKPGHILVLLDTE 93 (277)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCC-CC-----S-----SSCCCCSEEEEEE----EC-SSSTTCEEEEEEEC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHcCCCCCCcc-CC-----C-----CCCCCCceEEEEe----ec-cCCCCceEEEEecc
Confidence 35788999999999999999999743221110 10 0 0001233322211 11 13457789999999
Q ss_pred CCCCc-------H-HHHHHHhhccCeEEEEEeC
Q psy5021 86 GHVDF-------T-IEVERSLRVLDGAVIIICA 110 (1021)
Q Consensus 86 G~~~f-------~-~~~~~~l~~~D~~ilvvda 110 (1021)
|..+- . ....-++-.++..|+=+..
T Consensus 94 G~~~~~~~~~~~~~~i~~l~~llSs~~i~N~~~ 126 (277)
T d1f5na2 94 GLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIG 126 (277)
T ss_dssp CBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEES
T ss_pred cccccccccchhHHHHHHHHHHHhCEEEEeccc
Confidence 97431 1 1223344567776665543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.04 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHc
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYS 32 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~ 32 (1021)
|+|.++|++|+||||++..|...-
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999996543
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.47 E-value=0.04 Score=51.23 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSG 33 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~ 33 (1021)
+||.++|.+||||||+...|...-+
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999965443
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.40 E-value=0.04 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
|||.|.|.+|+|||||+.+++.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 7899999999999999999974
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.32 E-value=0.065 Score=51.08 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=22.0
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHH
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
+....-|||.|++|||||||+++|..
T Consensus 19 ~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999999964
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=91.18 E-value=0.062 Score=48.93 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERILFY 31 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~ 31 (1021)
-|.|.|.+|||||||+++|...
T Consensus 4 lIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999998643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.02 E-value=0.077 Score=50.73 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=24.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGS 34 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~ 34 (1021)
.+...|+|+|++||||||++..|...-|.
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~ 32 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 45578899999999999999999765553
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.78 E-value=0.074 Score=49.34 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHc
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYS 32 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~ 32 (1021)
+.|.|.|++|+||||+++.|...-
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.09 E-value=0.079 Score=49.90 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGS 34 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~ 34 (1021)
||.|+|++||||||++..|...-|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~ 26 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGI 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5999999999999999998754443
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.86 E-value=0.049 Score=52.31 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=26.6
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCC
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGS 34 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~ 34 (1021)
|..++.+-+.|.|+|++||||||++..|...-|.
T Consensus 1 ~~~~~~~~~iI~l~G~pGSGKsT~a~~La~~~g~ 34 (194)
T d3adka_ 1 MEEKLKKSKIIFVVGGPGSGKGTQCEKIVQKYGY 34 (194)
T ss_dssp CHHHHHTSCEEEEEECTTSSHHHHHHHHHHHTCC
T ss_pred CcccccCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4334556677999999999999999999765553
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.72 E-value=0.087 Score=49.70 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSG 33 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~ 33 (1021)
||+|+|.+|+||||++..|...-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 799999999999999999975544
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.63 E-value=0.075 Score=50.02 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
|.|+|.|.+|+||||+++.|..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999864
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.61 E-value=0.12 Score=49.44 Aligned_cols=30 Identities=20% Similarity=0.068 Sum_probs=25.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGS 34 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~ 34 (1021)
..++.-|+|+|++||||||++..|...-|.
T Consensus 5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g~ 34 (196)
T d1ukza_ 5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSF 34 (196)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 466888999999999999999999765543
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=89.41 E-value=0.11 Score=49.50 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=24.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGS 34 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~ 34 (1021)
.+.-+|+|+|++||||||++..|...-|.
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~~~g~ 32 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITKHFEL 32 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHHHBCC
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHCC
Confidence 45668999999999999999999765553
|
| >d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Elongation factor/aminomethyltransferase common domain superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain domain: Initiation factor eIF2 gamma subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.06 E-value=0.84 Score=36.68 Aligned_cols=66 Identities=23% Similarity=0.248 Sum_probs=46.4
Q ss_pred eeEEEEEEEeeccCCC----CCccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEE
Q psy5021 945 NIFECEVYILSKEEGG----RHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAI 1019 (1021)
Q Consensus 945 ~~f~a~i~~~~~~~~~----~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~l 1019 (1021)
.+|+.+++.|+.-.|. ...||+.|-.-++.++|+...+.+.-.. +| .+++.+.+|+|.+.|+|.+|
T Consensus 2 ~~i~i~~~Ll~r~vG~~~~~kV~pi~~~E~LmlnvGtatt~G~V~~vk-------~d--~~~v~L~~Pvca~~g~rVai 71 (89)
T d1kk1a2 2 DSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLG-------KD--EIEVKLQIPVCAEPGDRVAI 71 (89)
T ss_dssp EEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEE-------TT--EEEEEEEEEEECCTTCEEEE
T ss_pred eEEEEEEEEhHHhhCCcccccccCCcCCCEEEEEeccccccEEEEEEe-------Cc--EEEEEeCCCEECCCCCEEEE
Confidence 3566666666643211 2368999999999999988887664222 23 45777788999999998876
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=88.96 E-value=0.1 Score=48.49 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
+-|.|.|++||||||+++.|..
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998854
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=88.69 E-value=0.11 Score=51.22 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
-+||+|+.|||||||++.|..
T Consensus 27 i~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 479999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.55 E-value=0.12 Score=48.46 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGS 34 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~ 34 (1021)
+|.|+|++||||||+++.|...-+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~ 26 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999755443
|
| >d2qn6a2 b.44.1.1 (A:321-415) Initiation factor eIF2 gamma subunit {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Elongation factor/aminomethyltransferase common domain superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain domain: Initiation factor eIF2 gamma subunit species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.43 E-value=1.2 Score=36.17 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=50.0
Q ss_pred cceeeEEEEEEEeeccCCC----CCccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCC-e
Q psy5021 942 KSYNIFECEVYILSKEEGG----RHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGL-R 1016 (1021)
Q Consensus 942 ~~~~~f~a~i~~~~~~~~~----~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~-r 1016 (1021)
+..++|+.+++.|+.-.|. ...||+.|-.-++.++|+...+.+.-.. +| .+++.+.+|+|.+.++ |
T Consensus 4 P~~~~i~i~~~Ll~r~vG~~~~~kV~pi~~~E~LmlniGtatt~G~V~~vk-------~d--~~~v~L~~Pvca~~g~~r 74 (95)
T d2qn6a2 4 PVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVK-------KD--EIEVELRRPVAVWSNNIR 74 (95)
T ss_dssp CEEEEEEEEEEECSSCC-------CCCCCTTCEEEEEETTEEEEEEEEEEC-------SS--EEEEEEEEEEECSSSSEE
T ss_pred CcEEEEEEEEEehHhhhCCCccccccCCcCCCEEEEEeccccccEEEEEEe-------CC--EEEEEecCCEEecCCCcE
Confidence 3556799999988864221 2268999999999999988887664222 23 4578888999998886 8
Q ss_pred EEE
Q psy5021 1017 FAI 1019 (1021)
Q Consensus 1017 f~l 1019 (1021)
.+|
T Consensus 75 Vai 77 (95)
T d2qn6a2 75 TVI 77 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=88.38 E-value=0.11 Score=51.55 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll 29 (1021)
-.+||+|+.|+|||||++.|+
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~ 50 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQ 50 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999985
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=88.38 E-value=0.13 Score=48.40 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGS 34 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~ 34 (1021)
+|.|+|++||||||++..|...-+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~ 26 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGT 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5899999999999999999765443
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.26 E-value=0.1 Score=51.14 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll 29 (1021)
.++|+|+.|||||||++.|.
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~ 52 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIG 52 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCcchhhHhcc
Confidence 58999999999999999883
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.96 E-value=0.12 Score=49.21 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=21.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGS 34 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~ 34 (1021)
.+|.|+|++|+||||+++.|...-+.
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~~~ 29 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKYQL 29 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 35899999999999999998755443
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.62 E-value=0.13 Score=50.55 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll 29 (1021)
.++|+|+.|||||||++.|.
T Consensus 28 i~~liGpsGsGKSTLl~~i~ 47 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIA 47 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 58999999999999999885
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=87.56 E-value=0.12 Score=49.65 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll 29 (1021)
-++|+|+.|+|||||++.|.
T Consensus 29 i~~l~G~NGsGKSTLl~~i~ 48 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTIS 48 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 47999999999999999994
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.52 E-value=0.15 Score=49.45 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERILFY 31 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~ 31 (1021)
-|||.|.+|||||||++.|...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.39 E-value=0.12 Score=48.04 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSG 33 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~ 33 (1021)
+||+++|.+|+||||+...|...-+
T Consensus 2 p~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999864433
|
| >d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: YigZ C-terminal domain-like domain: Hypothetical protein YigZ, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.39 E-value=0.21 Score=38.98 Aligned_cols=65 Identities=14% Similarity=0.211 Sum_probs=57.7
Q ss_pred eeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCcccccceeeeeee
Q psy5021 594 PIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGH 659 (1021)
Q Consensus 594 P~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~ 659 (1021)
|+-.+++.|+=..+|+|-..|.+..+.|.+.+..+ .+.+...+|..+.-.|...+...|.|.+-.
T Consensus 1 P~t~~~l~~dY~~~~~v~~~L~~~~~~i~~~~y~~-~V~l~v~vp~~~~~~f~~~l~d~t~G~v~~ 65 (71)
T d1vi7a2 1 PLTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQA-FVLLRVALPAAKVAEFSAKLADFSRGSLQL 65 (71)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHTTCEEEEEEESS-SEEEEEEECSSTHHHHHHHHHHHHTTCCCC
T ss_pred CceEEEEEeccccHHHHHHHHHHCCCEEEeeeecc-EEEEEEEECHHHHHHHHHHHHHhCCCcEEE
Confidence 88899999999999999999999999999999855 489999999999888888888888887543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=87.33 E-value=0.16 Score=47.09 Aligned_cols=25 Identities=20% Similarity=0.061 Sum_probs=21.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSG 33 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~ 33 (1021)
|-|.|.|.+|+||||++..|...-+
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4588899999999999999976544
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.20 E-value=0.43 Score=44.38 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEE
Q psy5021 742 ILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774 (1021)
Q Consensus 742 ilVvDa~~g~~~qt~e~l~~~~~~~ip~iIvvi 774 (1021)
.+|+|++.....+-..++.+++..|.+ +.++.
T Consensus 67 ~vIiD~t~~~~~~R~~~~~~a~~~~~~-~~~v~ 98 (172)
T d1yj5a2 67 RVVIDNTNPDVPSRARYIQCAKDAGVP-CRCFN 98 (172)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHHTCC-EEEEE
T ss_pred CceeeCcCCCHHHHHHHHHHHHhcCCC-EEEEE
Confidence 466898876666666778889999998 44443
|
| >d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Elongation factor/aminomethyltransferase common domain superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain domain: Initiation factor eIF2 gamma subunit species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.17 E-value=1.5 Score=35.18 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=47.9
Q ss_pred eeEEEEEEEeeccCC----CCCccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEE
Q psy5021 945 NIFECEVYILSKEEG----GRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAI 1019 (1021)
Q Consensus 945 ~~f~a~i~~~~~~~~----~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~l 1019 (1021)
.+|+.++++|+.-.| ....||+.|-.-++.++|+...+.+.-. + +| .+++.+.+|+|.+.|+|.+|
T Consensus 3 ~~i~i~~~Ll~r~vG~~~~~kV~~i~~~E~LmlnvGtatt~G~V~~v------k-~d--~~~i~L~~PvCa~~g~rVai 72 (90)
T d1s0ua2 3 EKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSA------R-GD--IADIKLKLPICAEIGDRVAI 72 (90)
T ss_dssp EEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEE------E-TT--EEEEEEEEEEECCTTCEEEE
T ss_pred EEEEEEEehhhHhhCCCccccccCCcCCCEEEEEeccccccEEEEEE------e-CC--EEEEEecCCEECCCCCEEEE
Confidence 457777777764421 1236899999999999998887766422 1 13 45788889999999998876
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=87.17 E-value=0.13 Score=48.01 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSG 33 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~ 33 (1021)
++|.++|++|+||||+...|...-|
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999965444
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=87.11 E-value=0.15 Score=51.03 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll 29 (1021)
-.+||+|+.|+|||||++.|+
T Consensus 42 e~iaivG~sGsGKSTLl~ll~ 62 (253)
T d3b60a1 42 KTVALVGRSGSGKSTIASLIT 62 (253)
T ss_dssp CEEEEEECTTSSHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 368999999999999999985
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.07 E-value=0.14 Score=50.40 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll 29 (1021)
-++|+|+.|||||||++.|.
T Consensus 34 ~~~liGpsGaGKSTLl~~i~ 53 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIA 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 58999999999999999985
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=87.06 E-value=0.21 Score=46.36 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=21.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHH
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
.+=..|-++|.+||||||+..+|..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446889999999999999998863
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=86.90 E-value=0.14 Score=50.83 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=19.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll 29 (1021)
-.+||+|+.|+|||||++.|.
T Consensus 29 e~vaivG~sGsGKSTLl~ll~ 49 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLE 49 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.83 E-value=0.15 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
-.+||+|+.|+|||||++.|+.
T Consensus 63 e~vaivG~nGsGKSTLl~~i~G 84 (281)
T d1r0wa_ 63 EMLAITGSTGSGKTSLLMLILG 84 (281)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 3589999999999999999963
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=86.79 E-value=0.15 Score=50.26 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll 29 (1021)
.++++|+.|||||||++.|.
T Consensus 31 ~~~liG~sGaGKSTll~~i~ 50 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIA 50 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 58999999999999999885
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.77 E-value=0.41 Score=43.98 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.3
Q ss_pred eeeeeeeeeccchhhhhhhccc
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKV 674 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~ 674 (1021)
..|+.|++++|||||+++|...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3588999999999999999863
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=86.56 E-value=0.15 Score=50.19 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll 29 (1021)
--++|+|+.|||||||++.|.
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~ 52 (240)
T d3dhwc1 32 QIYGVIGASGAGKSTLIRCVN 52 (240)
T ss_dssp CEEEEEESTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHc
Confidence 358999999999999999983
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.52 E-value=0.16 Score=50.64 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll 29 (1021)
-.+||+|+.|+|||||++.|.
T Consensus 41 e~vaivG~sGsGKSTLl~li~ 61 (251)
T d1jj7a_ 41 EVTALVGPNGSGKSTVAALLQ 61 (251)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999984
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.00 E-value=0.2 Score=47.24 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=20.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHc
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYS 32 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~ 32 (1021)
+-|+|+|++|+|||||++.|....
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 347899999999999999998553
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=85.97 E-value=0.17 Score=50.14 Aligned_cols=20 Identities=40% Similarity=0.408 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll 29 (1021)
-++++|+.|||||||++.|.
T Consensus 34 i~~liGpnGaGKSTl~~~i~ 53 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999994
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=85.95 E-value=0.2 Score=47.40 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGS 34 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~ 34 (1021)
+|+|+|++|+||||++..|...-|.
T Consensus 5 riil~G~pGSGKsT~a~~La~~~g~ 29 (190)
T d1ak2a1 5 RAVLLGPPGAGKGTQAPKLAKNFCV 29 (190)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5779999999999999999755443
|
| >d1wb1a3 b.44.1.1 (A:272-387) Elongation factor SelB, domain 3 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Elongation factor/aminomethyltransferase common domain superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain domain: Elongation factor SelB, domain 3 species: Methanococcus maripaludis [TaxId: 39152]
Probab=85.95 E-value=0.41 Score=38.51 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=55.1
Q ss_pred cceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeec------cC--C---CcccccCCCeEEEEEEEceeee
Q psy5021 942 KSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICK------LP--E---NVEMVLPGDNIKLNVTLLSSIA 1010 (1021)
Q Consensus 942 ~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~------~~--~---~~~~l~~g~~~~v~~~~~~pi~ 1010 (1021)
+....|.|++-+.+-- ...|.+-...+++++-..++|++. +. + ..+.+.+|+.+-|-|+++.++.
T Consensus 3 ~~vdkivaKvki~diF----~ynl~pKmkvHlnVGml~VPA~ivp~kk~~~~~~~e~iil~ev~~G~ecYc~feL~ekV~ 78 (116)
T d1wb1a3 3 QTVDKIVAKIKISDIF----KYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNECYCAFELEEKVL 78 (116)
T ss_dssp CCEEEEEECCCCCSSC----CSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEEC
T ss_pred chhhhheeeeEehhhh----cccCCcceEEEEEeeeEEeeeEEeeeEEeecCCCcCCEehhhhcCCceEEEEEEeCchhh
Confidence 3456677776655432 246777888888888888888652 11 1 2566889999999999999999
Q ss_pred cccCCeEEE
Q psy5021 1011 IEIGLRFAI 1019 (1021)
Q Consensus 1011 ~~~~~rf~l 1019 (1021)
++.|+|.++
T Consensus 79 ae~GDrili 87 (116)
T d1wb1a3 79 AEVGDRVLI 87 (116)
T ss_dssp CCSSCCCBE
T ss_pred hhcCCeEEE
Confidence 999999775
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.73 E-value=0.18 Score=49.51 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll 29 (1021)
-++|+|+.|||||||++.|.
T Consensus 26 ~~~liGpnGaGKSTll~~i~ 45 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 46899999999999999995
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.66 E-value=0.17 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHc
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYS 32 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~ 32 (1021)
|=|+|+|++|+|||||.++|+...
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=85.39 E-value=0.13 Score=50.32 Aligned_cols=20 Identities=35% Similarity=0.280 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll 29 (1021)
-++|+|+.|||||||++.|.
T Consensus 28 ~~~liGpsGaGKSTll~~l~ 47 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIA 47 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47999999999999999995
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=85.18 E-value=0.27 Score=45.23 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=22.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSG 33 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~ 33 (1021)
..+-|.|+|.+|+||||++..|....+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346688999999999999999976544
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.00 E-value=0.39 Score=48.05 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHH
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
.-.|+.++|.+|+|||++++.|..
T Consensus 38 ~k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 38 RKNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCcEEECCCCCcHHHHHHHHHH
Confidence 347999999999999999999864
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=84.97 E-value=0.096 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=19.1
Q ss_pred eeeeeeeeeccchhhhhhhccc
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKV 674 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~ 674 (1021)
..++.|++++|||||+++|...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3578899999999999999863
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=84.79 E-value=0.2 Score=50.05 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll 29 (1021)
-+||+|+.|||||||++.|.
T Consensus 30 i~~iiG~sGsGKSTLl~~i~ 49 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCIN 49 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999999984
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.66 E-value=0.21 Score=47.53 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHc
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYS 32 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~ 32 (1021)
=|+|+|++|+|||||+++|+...
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999998543
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=84.59 E-value=0.21 Score=49.28 Aligned_cols=21 Identities=43% Similarity=0.439 Sum_probs=18.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll 29 (1021)
-.+|++|+.|||||||++.|.
T Consensus 29 ei~glvG~nGaGKSTLl~~l~ 49 (238)
T d1vpla_ 29 EIFGLIGPNGAGKTTTLRIIS 49 (238)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999994
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.57 E-value=0.32 Score=48.66 Aligned_cols=29 Identities=17% Similarity=0.028 Sum_probs=24.4
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSG 33 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~ 33 (1021)
.+..+.|.+.|++|+|||||+.+|....+
T Consensus 29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 29 VESPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45568899999999999999999976543
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=84.29 E-value=0.42 Score=43.50 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGS 34 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~ 34 (1021)
-|++-|..|||||||+..++..-|.
T Consensus 35 ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 35 MVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEecCCCccHHHHHHHHHhhccc
Confidence 5889999999999999999876554
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.28 E-value=0.65 Score=46.74 Aligned_cols=86 Identities=12% Similarity=0.041 Sum_probs=47.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh-----
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD----- 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~----- 726 (1021)
..++++|...+|||||+|.|.+....-.- .......+.|+-+..... ....+..+.++||.|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~---------~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~~~~~~ 102 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSL---------GSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGDVEKGD 102 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCSCC---------CCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCCGGGCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCCCCcc---------CCCCCCCCCceEEEEeec-cCCCCceEEEEeccccccccccc
Confidence 46788999999999999999974311100 111112233442211111 122456789999999532
Q ss_pred --h-HHHHHHHhhhCCEEEEEEEC
Q psy5021 727 --Y-IKNMITGAAQMDGAILVCSA 747 (1021)
Q Consensus 727 --~-~~~~~~~~~~aD~ailVvDa 747 (1021)
+ .+...-.+.-+++.|+=+..
T Consensus 103 ~~~~~~i~~l~~llSs~~i~N~~~ 126 (277)
T d1f5na2 103 NQNDSWIFALAVLLSSTFVYNSIG 126 (277)
T ss_dssp CTTHHHHHHHHHHHCSEEEEEEES
T ss_pred chhHHHHHHHHHHHhCEEEEeccc
Confidence 2 12222233457877766654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.11 E-value=0.27 Score=46.10 Aligned_cols=24 Identities=4% Similarity=0.228 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHc
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYS 32 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~ 32 (1021)
|-|+|+|+.|+|||||+++|+...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998543
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.81 E-value=0.3 Score=45.78 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSG 33 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~ 33 (1021)
.|.|+|.+||||||++..|...-|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 377999999999999999975544
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.44 E-value=0.25 Score=49.29 Aligned_cols=20 Identities=30% Similarity=0.214 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy5021 10 NIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll 29 (1021)
-+|++|+.|||||||++.|.
T Consensus 32 i~~liG~nGaGKSTLl~~i~ 51 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVIT 51 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47999999999999999994
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=83.21 E-value=0.31 Score=45.60 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=19.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
+-|.|.|.+||||||+++.|..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999853
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.75 E-value=0.37 Score=45.60 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=21.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSG 33 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~ 33 (1021)
..|.|+|++||||||.+..|...-|
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999975444
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.60 E-value=0.15 Score=50.18 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=19.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll 29 (1021)
-.++|+|+.|+|||||++.|.
T Consensus 32 e~~~iiG~sGsGKSTll~~i~ 52 (242)
T d1oxxk2 32 ERFGILGPSGAGKTTFMRIIA 52 (242)
T ss_dssp CEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 358999999999999999995
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=82.60 E-value=0.3 Score=46.18 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll 29 (1021)
--|||.|.+||||||+++.|-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999874
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=82.43 E-value=0.2 Score=50.03 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll 29 (1021)
-.+||+|+.|+|||||++.|+
T Consensus 45 e~vaivG~sGsGKSTLl~ll~ 65 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLINLIP 65 (255)
T ss_dssp CEEEEECSTTSSHHHHHTTTT
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 358999999999999999874
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=82.41 E-value=0.32 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHc
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYS 32 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~ 32 (1021)
-|+|+|++|+|||||.++|+...
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998653
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.39 E-value=0.18 Score=47.69 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=19.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHH
Q psy5021 9 RNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
..|.++|.+||||||+++.|..
T Consensus 20 ~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 20 CTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999953
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=82.03 E-value=0.3 Score=46.32 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=20.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHH
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll 29 (1021)
.+-.-|+|-|..||||||+++.|.
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~ 30 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFE 30 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 445579999999999999999884
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=81.98 E-value=0.37 Score=46.62 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGS 34 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~ 34 (1021)
+|+|-|++||||||++..|...-|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999755443
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.14 E-value=0.25 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHH
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll 29 (1021)
+++-|+|-|..||||||+++.|.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~ 23 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILK 23 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999884
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=81.05 E-value=0.36 Score=47.37 Aligned_cols=28 Identities=18% Similarity=0.032 Sum_probs=23.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSG 33 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~ 33 (1021)
+.++++-+.|++|+||||++..|....+
T Consensus 33 ~~~~~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 33 EVLDHVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHhccC
Confidence 3467899999999999999999976544
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.67 E-value=0.37 Score=46.12 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=17.9
Q ss_pred EEEEeCCCCCHHHHHHHHH
Q psy5021 11 IGIIAHVDAGKTTTTERIL 29 (1021)
Q Consensus 11 i~iiG~~~~GKTTL~~~Ll 29 (1021)
|+|-|..||||||+++.|.
T Consensus 3 I~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999999885
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=80.50 E-value=0.37 Score=49.27 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=21.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHH
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
....-|||.|.++||||||++.|..
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence 3456799999999999999998854
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.29 E-value=0.51 Score=44.59 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHH
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILF 30 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~ 30 (1021)
-.|+.++|.+|+|||++++.|..
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHH
Confidence 46999999999999999999864
|