Psyllid ID: psy5031

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MKKEVDLKMGGDFEEDSLPQYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEEcccccEEEcHHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHccccEEcccccEEEEccEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccccccccEEcccccccccEEEEEEccEEEEcccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccccEEEEEEcccccEEccHHHHHHHHHccccccccEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccccccccEEEccccHHHcccEEEccccccccEEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEccccccccEEEEEEccEEEEEcccccEEEEEEEEccccccccccHHHHHEEEHHHHHHcHEEEEEccHHccHHHHHHHHHHHHHHHHHHHHccccccEEEEcc
Coil and Loop (DISEMBL)
mkkevdlkmggdfeedslpqygaiQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFtyieeapsgdwmgpddvplegfswrggserdttgILMWSHVYIAtlptgekvsaFRKGKSFLLDFLLRYMNFtyieeapsgdwmgpddvplegfswrggserdttgILMWSHVYIATLPTGEKAAVILLDtqgtfdsestvRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLaladtgtkpfqrlqfl
Flexible Loop (DISEMBL)
mkkevdlkmggdfeedslpqyGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEeapsgdwmgpdDVPLEGFSWRGGSERDTTGILMWSHVYIATLptgekvsaFRKGKSFLLDFLLRYMNFTYIEeapsgdwmgpdDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTqgtfdsestvRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL
Low Complexity Region (SEG)
MKKEVDLKMGGDFEEDSLPQYGAIQIVKSEEKHKFILDYEALERILLQdhvkdkhvvvvSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL
Disordered region (IsUnstruct)
*******************QYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADT***********
Disordered Region (DISOPRED)
************************QIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIE**********DDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTY*******************FSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL
Disordered Region (DISEMBL)
MKKEVDLKMGGDFEEDSLPQYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL
Disordered Region (DISPRO)
**************EDSLPQYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIE*APSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYI****SGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKEVDLKMGGDFEEDSLPQYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q9VC57	541	Atlastin OS=Drosophila me	yes	N/A	0.516	0.268	0.787	5e-63
Q58D72	558	Atlastin-1 OS=Bos taurus	yes	N/A	0.501	0.252	0.698	7e-54
Q60HD2	558	Atlastin-1 OS=Macaca fasc	N/A	N/A	0.501	0.252	0.705	1e-53
Q5R4P1	558	Atlastin-1 OS=Pongo abeli	no	N/A	0.501	0.252	0.698	2e-53
Q8WXF7	558	Atlastin-1 OS=Homo sapien	yes	N/A	0.501	0.252	0.698	2e-53
Q6PA06	583	Atlastin-2 OS=Mus musculu	yes	N/A	0.569	0.274	0.606	2e-53
Q95LN3	565	Atlastin-2 OS=Macaca fasc	N/A	N/A	0.569	0.283	0.606	2e-53
Q6GN29	569	Atlastin-2 OS=Xenopus lae	N/A	N/A	0.565	0.279	0.612	2e-53
Q8NHH9	583	Atlastin-2 OS=Homo sapien	no	N/A	0.569	0.274	0.606	3e-53
Q91YH5	541	Atlastin-3 OS=Mus musculu	no	N/A	0.601	0.312	0.584	2e-52

>sp|Q9VC57|ATLAS_DROME Atlastin OS=Drosophila melanogaster GN=atl PE=1 SV=1

 Score =  241 bits (614), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/146 (78%), Positives = 126/146 (86%), Gaps = 1/146 (0%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFLLDF LRYM   Y+    + DW+G +  PLEGFSWRGGSERDTTGILMWS +
Sbjct: 46  AFRKGKSFLLDFFLRYMYSKYVHHDAT-DWLGGESDPLEGFSWRGGSERDTTGILMWSDI 104

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++   P G+K A+ILLDTQG FDS+STVRDCATVFALSTMLSS+QIYNLSQNIQEDDLQH
Sbjct: 105 FLHDYPNGDKIAIILLDTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQH 164

Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLALADTG KPFQRLQFL
Sbjct: 165 LQLFTEYGRLALADTGKKPFQRLQFL 190

GTPase tethering membranes through formation of trans-homooligomer and mediating homotypic fusion of endoplasmic reticulum membranes. Functions in endoplasmic reticulum tubular network biogenesis. May also regulate microtubule polymerization and Golgi biogenesis. Required for dopaminergic neurons survival and the growth of muscles and synapses at neuromuscular junctions.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|Q58D72|ATLA1_BOVIN Atlastin-1 OS=Bos taurus GN=ATL1 PE=2 SV=2

 Score =  210 bits (535), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 122/146 (83%), Gaps = 5/146 (3%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75  AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDHNEPLTGFSWRGGSERETTGIQIWSEI 129

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189

Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

GTPase tethering membranes through formation of trans-homooligomer and mediating homotypic fusion of endoplasmic reticulum membranes. Functions in endoplasmic reticulum tubular network biogenesis. May also regulate Golgi biogenesis. May regulate axonal development.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q60HD2|ATLA1_MACFA Atlastin-1 OS=Macaca fascicularis GN=ATL1 PE=2 SV=1

 Score =  210 bits (534), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/146 (70%), Positives = 122/146 (83%), Gaps = 5/146 (3%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS V
Sbjct: 75  AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEV 129

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189

Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

GTPase tethering membranes through formation of trans-homooligomer and mediating homotypic fusion of endoplasmic reticulum membranes. Functions in endoplasmic reticulum tubular network biogenesis. May also regulate Golgi biogenesis. May regulate axonal development.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q5R4P1|ATLA1_PONAB Atlastin-1 OS=Pongo abelii GN=ATL1 PE=2 SV=2

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 122/146 (83%), Gaps = 5/146 (3%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75  AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189

Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

GTPase tethering membranes through formation of trans-homooligomer and mediating homotypic fusion of endoplasmic reticulum membranes. Functions in endoplasmic reticulum tubular network biogenesis. May also regulate Golgi biogenesis. May regulate axonal development.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8WXF7|ATLA1_HUMAN Atlastin-1 OS=Homo sapiens GN=ATL1 PE=1 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 122/146 (83%), Gaps = 5/146 (3%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75  AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189

Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

GTPase tethering membranes through formation of trans-homooligomer and mediating homotypic fusion of endoplasmic reticulum membranes. Functions in endoplasmic reticulum tubular network biogenesis. May also regulate Golgi biogenesis. May regulate axonal development.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q6PA06|ATLA2_MOUSE Atlastin-2 OS=Mus musculus GN=Atl2 PE=1 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 125/165 (75%), Gaps = 5/165 (3%)

Query: 117 ILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGF 176
           IL+  H+    +       AFRKGKSFLLDF+LRYM   Y +++ S  W+G ++ PL GF
Sbjct: 83  ILLQEHIRDLNIVVVSVAGAFRKGKSFLLDFMLRYM---YNKDSQS--WIGGNNEPLTGF 137

Query: 177 SWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTML 236
           +WRGG ER+TTGI +W+ V++   P G K AV+L+DTQG FDS+ST++DCATVFALSTM 
Sbjct: 138 TWRGGCERETTGIQVWNEVFVIDRPNGTKVAVLLMDTQGAFDSQSTIKDCATVFALSTMT 197

Query: 237 SSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL 281
           SS+Q+YNLSQNIQEDDLQHLQLFTEYGRLA+ +   KPFQ L FL
Sbjct: 198 SSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQKPFQTLMFL 242

GTPase tethering membranes through formation of trans-homooligomer and mediating homotypic fusion of endoplasmic reticulum membranes. Functions in endoplasmic reticulum tubular network biogenesis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q95LN3|ATLA2_MACFA Atlastin-2 OS=Macaca fascicularis GN=ATL2 PE=2 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 125/165 (75%), Gaps = 5/165 (3%)

Query: 117 ILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGF 176
           IL+  H+    +       AFRKGKSFLLDF+LRYM   Y +++ S  W+G ++ PL GF
Sbjct: 65  ILLQEHIRDLNIVVVSVAGAFRKGKSFLLDFMLRYM---YNKDSQS--WIGGNNEPLTGF 119

Query: 177 SWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTML 236
           +WRGG ER+TTGI +W+ V++   P G K AV+L+DTQG FDS+ST++DCATVFALSTM 
Sbjct: 120 TWRGGCERETTGIQVWNEVFVIDRPNGTKVAVLLMDTQGAFDSQSTIKDCATVFALSTMT 179

Query: 237 SSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL 281
           SS+Q+YNLSQNIQEDDLQHLQLFTEYGRLA+ +   KPFQ L FL
Sbjct: 180 SSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQKPFQTLMFL 224

GTPase tethering membranes through formation of trans-homooligomer and mediating homotypic fusion of endoplasmic reticulum membranes. Functions in endoplasmic reticulum tubular network biogenesis.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q6GN29|ATLA2_XENLA Atlastin-2 OS=Xenopus laevis GN=atl2 PE=2 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/165 (61%), Positives = 121/165 (73%), Gaps = 6/165 (3%)

Query: 117 ILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGF 176
           ILM  H+    +       AFRKGKSFLLDF+LR+M       + S  W+G +  PL GF
Sbjct: 72  ILMQDHIRDLNVVVLSVAGAFRKGKSFLLDFMLRFMY------SQSSSWIGGNYEPLTGF 125

Query: 177 SWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTML 236
           +WRGG ER+TTGI +WS V++   P G K AVIL+DTQG FDS+ST++DCATVFALSTM 
Sbjct: 126 TWRGGCERETTGIQIWSEVFVVEKPDGSKVAVILMDTQGAFDSQSTIKDCATVFALSTMT 185

Query: 237 SSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL 281
           SS+Q+YNLSQNIQEDDLQHLQLFTEYGRLA+ +   KPFQ L FL
Sbjct: 186 SSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYKKPFQTLMFL 230

GTPase tethering membranes through formation of trans-homooligomer and mediating homotypic fusion of endoplasmic reticulum membranes. Functions in endoplasmic reticulum tubular network biogenesis.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8NHH9|ATLA2_HUMAN Atlastin-2 OS=Homo sapiens GN=ATL2 PE=1 SV=2

 Score =  209 bits (531), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 125/165 (75%), Gaps = 5/165 (3%)

Query: 117 ILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGF 176
           IL+  H+    +       AFRKGKSFLLDF+LRYM   Y +++ S  W+G ++ PL GF
Sbjct: 83  ILLQEHIRDLNIVVVSVAGAFRKGKSFLLDFMLRYM---YNKDSQS--WIGGNNEPLTGF 137

Query: 177 SWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTML 236
           +WRGG ER+TTGI +W+ V++   P G K AV+L+DTQG FDS+ST++DCATVFALSTM 
Sbjct: 138 TWRGGCERETTGIQVWNEVFVIDRPNGTKVAVLLMDTQGAFDSQSTIKDCATVFALSTMT 197

Query: 237 SSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL 281
           SS+Q+YNLSQNIQEDDLQHLQLFTEYGRLA+ +   KPFQ L FL
Sbjct: 198 SSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQKPFQTLMFL 242

GTPase tethering membranes through formation of trans-homooligomer and mediating homotypic fusion of endoplasmic reticulum membranes. Functions in endoplasmic reticulum tubular network biogenesis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q91YH5|ATLA3_MOUSE Atlastin-3 OS=Mus musculus GN=Atl3 PE=2 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/171 (58%), Positives = 123/171 (71%), Gaps = 2/171 (1%)

Query: 111 ERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDD 170
           ER    +L+  H+    +       AFRKGKSF+LDF+LRY+     +E    DW+G  +
Sbjct: 43  ERALASVLLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLRYLYSQ--KEGGHSDWLGDPE 100

Query: 171 VPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVF 230
            PL GFSWRGGS+ +TTGI +WS V+    P G+K AV+L+DTQG FDS+STV+DCAT+F
Sbjct: 101 EPLTGFSWRGGSDPETTGIQIWSEVFTVKKPCGKKVAVVLMDTQGAFDSQSTVKDCATIF 160

Query: 231 ALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL 281
           ALSTM SS+QIYNLSQNIQEDDLQ LQLFTEYGRLA+ +   KPFQ L FL
Sbjct: 161 ALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFL 211

GTPase tethering membranes through formation of trans-homooligomer and mediating homotypic fusion of endoplasmic reticulum membranes. Functions in endoplasmic reticulum tubular network biogenesis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
351702031	606	Atlastin-3 [Heterocephalus glaber]	0.911	0.422	0.565	5e-80
157134123	548	atlastin [Aedes aegypti] gi|108881409|gb	0.612	0.313	0.686	4e-63
289740431	538	guanylate-binding protein [Glossina mors	0.612	0.319	0.686	2e-62
345498404	588	PREDICTED: atlastin-like isoform 1 [Naso	0.519	0.248	0.787	4e-62
170045221	527	atlastin [Culex quinquefasciatus] gi|167	0.612	0.326	0.680	5e-62
340714459	603	PREDICTED: atlastin-like isoform 1 [Bomb	0.519	0.242	0.773	7e-62
307213647	659	Atlastin-2 [Harpegnathos saltator]	0.516	0.220	0.787	8e-62
332016235	656	Atlastin [Acromyrmex echinatior]	0.519	0.222	0.787	8e-62
189239475	560	PREDICTED: similar to AGAP002047-PA [Tri	0.519	0.260	0.767	9e-62
350399193	603	PREDICTED: atlastin-like isoform 2 [Bomb	0.519	0.242	0.773	1e-61

>gi|351702031|gb|EHB04950.1| Atlastin-3 [Heterocephalus glaber]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 155/274 (56%), Positives = 196/274 (71%), Gaps = 18/274 (6%)

Query: 22  GAIQIV-KSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM 80
           G +Q+V   +++H F L+ +AL  ILLQDH++D  VVVVSVAGAFRKGKSF+LDF+LRY+
Sbjct: 7   GPVQVVLVHKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLRYL 66

Query: 81  NFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK------- 133
                +E    +W+G  + PL GFSWRGGS+ +TTGI +WS V+    P G+K       
Sbjct: 67  YSQ--KEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKDHIRDLD 124

Query: 134 ------VSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTT 187
                   AFRKGKSF+LDF+LRY+     +E    +W+G  + PL GFSWRGGS+ +TT
Sbjct: 125 VVVVSVAGAFRKGKSFILDFMLRYLYSQ--KEGGHSNWLGDPEEPLTGFSWRGGSDPETT 182

Query: 188 GILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQN 247
           GI +WS V+    P G+K AV+L+DTQG FDS+STV+DCAT+FALSTM SS+QIYNLSQN
Sbjct: 183 GIQIWSEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQN 242

Query: 248 IQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL 281
           IQEDDLQ LQLFTEYGRLA+ +   KPFQ L FL
Sbjct: 243 IQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFL 276

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157134123|ref|XP_001663157.1| atlastin [Aedes aegypti] gi|108881409|gb|EAT45634.1| AAEL003109-PA [Aedes aegypti]

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 118/172 (68%), Positives = 137/172 (79%)

Query: 110 SERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPD 169
           +E   T IL+  +V   T+       AFRKGKSFLLDF LRYM   Y+    + +W+G +
Sbjct: 22  NEDALTEILLQENVRDRTVVVISVAGAFRKGKSFLLDFFLRYMYSKYVHNKSASEWLGDE 81

Query: 170 DVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATV 229
           + PL GFSWRGGSERDTTGILMWS +++   P+GEK A+IL+DTQG FDS+STVRDCATV
Sbjct: 82  NEPLTGFSWRGGSERDTTGILMWSDIFLHETPSGEKYAIILMDTQGAFDSQSTVRDCATV 141

Query: 230 FALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL 281
           FALSTMLSS+QIYNLSQNIQEDDLQHLQLFTEYGRLALAD+G KPFQRLQFL
Sbjct: 142 FALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADSGKKPFQRLQFL 193

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740431|gb|ADD18963.1| guanylate-binding protein [Glossina morsitans morsitans]

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/172 (68%), Positives = 135/172 (78%)

Query: 110 SERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPD 169
           +E + + +LM   V    +       +FRKGKSFLLDF LRYM    +    +GDW+G D
Sbjct: 20  NEEELSEVLMRDDVKDRYICVVSVAGSFRKGKSFLLDFFLRYMYANQVVNHETGDWLGND 79

Query: 170 DVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATV 229
           + PL GFSWRGGSERDTTGILMWS ++    P G+K AVILLDTQG FDS+STVR+CATV
Sbjct: 80  NQPLTGFSWRGGSERDTTGILMWSDIFCIDTPNGDKVAVILLDTQGIFDSQSTVRECATV 139

Query: 230 FALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL 281
           FALSTM+SS+QIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL
Sbjct: 140 FALSTMVSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL 191

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498404|ref|XP_001607339.2| PREDICTED: atlastin-like isoform 1 [Nasonia vitripennis] gi|345498406|ref|XP_003428223.1| PREDICTED: atlastin-like isoform 2 [Nasonia vitripennis]

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 115/146 (78%), Positives = 126/146 (86%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFLLDF LRYMN  YI++  +  W+G +  PL GFSWRGGSERDTTGILMWS V
Sbjct: 96  AFRKGKSFLLDFFLRYMNSKYIQKVETDGWLGGETDPLGGFSWRGGSERDTTGILMWSKV 155

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           + ATL  GEK AVIL+DTQG FDS+STVRDCATVFALSTMLSS+QIYNLSQNIQEDDLQH
Sbjct: 156 FPATLANGEKVAVILMDTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQH 215

Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLAL  +G+ PFQRLQFL
Sbjct: 216 LQLFTEYGRLALEKSGSTPFQRLQFL 241

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170045221|ref|XP_001850215.1| atlastin [Culex quinquefasciatus] gi|167868202|gb|EDS31585.1| atlastin [Culex quinquefasciatus]

 Score =  243 bits (621), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 117/172 (68%), Positives = 136/172 (79%)

Query: 110 SERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPD 169
           +E   T IL+   +   ++       AFRKGKSFLLDF LR+M   Y+    + +W+G +
Sbjct: 20  NEDALTEILLQDSIKDRSVVVISVAGAFRKGKSFLLDFFLRFMYSKYVHHQSASEWLGDE 79

Query: 170 DVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATV 229
           + PL GFSWRGGSERDTTGILMWS +++   P GEK A+ILLDTQGTFDS+STVRDCATV
Sbjct: 80  NEPLTGFSWRGGSERDTTGILMWSDIFLHDKPNGEKLAIILLDTQGTFDSQSTVRDCATV 139

Query: 230 FALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL 281
           FALSTMLSS+QIYNLSQNIQEDDLQHLQLFTEYGRLALAD+G KPFQRLQFL
Sbjct: 140 FALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADSGKKPFQRLQFL 191

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714459|ref|XP_003395746.1| PREDICTED: atlastin-like isoform 1 [Bombus terrestris]

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 123/146 (84%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFLLDF LRYMN  Y     +  W+G DD PL GFSW+GGSERDTTGILMWS V
Sbjct: 113 AFRKGKSFLLDFFLRYMNSQYNNNNQTDSWLGKDDEPLSGFSWKGGSERDTTGILMWSKV 172

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           +  TLP GEK AVIL+DTQG FDS+STV+DCATVFALSTMLSS+QIYNLSQNIQEDDLQH
Sbjct: 173 FCGTLPDGEKVAVILMDTQGAFDSQSTVKDCATVFALSTMLSSVQIYNLSQNIQEDDLQH 232

Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLAL  +G  PFQ+LQFL
Sbjct: 233 LQLFTEYGRLALQKSGVTPFQKLQFL 258

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213647|gb|EFN89021.1| Atlastin-2 [Harpegnathos saltator]

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 115/146 (78%), Positives = 124/146 (84%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFLLDF LRYMN  Y   + +  W+G +D PL GFSWRGGSERDTTGILMWS V
Sbjct: 167 AFRKGKSFLLDFFLRYMNNKYTLHSNTDTWLGAEDEPLSGFSWRGGSERDTTGILMWSKV 226

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           Y ATL  GEK AVIL+DTQG FDS+STVRDCATVFALSTMLSS+QIYNLSQNIQEDDLQH
Sbjct: 227 YPATLANGEKVAVILMDTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQH 286

Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLAL  + + PFQRLQFL
Sbjct: 287 LQLFTEYGRLALESSDSTPFQRLQFL 312

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016235|gb|EGI57148.1| Atlastin [Acromyrmex echinatior]

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 115/146 (78%), Positives = 125/146 (85%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFLLDF LRYMN  YI +  +  W+G +D PL GFSWRGGSERDTTGILMWS V
Sbjct: 165 AFRKGKSFLLDFFLRYMNNKYILQNNTDSWLGAEDEPLSGFSWRGGSERDTTGILMWSKV 224

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           Y ATL  GE+ AVIL+DTQG FDS+STVRDCATVFALSTMLSS+QIYNLSQNIQEDDLQH
Sbjct: 225 YPATLANGEEIAVILMDTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQH 284

Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLAL  + + PFQRLQFL
Sbjct: 285 LQLFTEYGRLALESSDSTPFQRLQFL 310

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239475|ref|XP_975363.2| PREDICTED: similar to AGAP002047-PA [Tribolium castaneum] gi|270010557|gb|EFA07005.1| hypothetical protein TcasGA2_TC009975 [Tribolium castaneum]

 Score =  243 bits (619), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 112/146 (76%), Positives = 128/146 (87%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFR GKSFLLDF LRY+N  Y+ +  + +W+G DD PLEGFSW+GGSERDTTGILMWS V
Sbjct: 73  AFRHGKSFLLDFFLRYLNSKYVLKQNTSEWLGSDDAPLEGFSWKGGSERDTTGILMWSDV 132

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++  L TGEK AV+LLDTQGT+DS+STVR+CAT+FALSTMLSS+QIYNLS NIQEDDLQH
Sbjct: 133 FLTELLTGEKVAVVLLDTQGTWDSKSTVRECATIFALSTMLSSVQIYNLSSNIQEDDLQH 192

Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLALAD+G  PFQRLQFL
Sbjct: 193 LQLFTEYGRLALADSGKTPFQRLQFL 218

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399193|ref|XP_003485450.1| PREDICTED: atlastin-like isoform 2 [Bombus impatiens]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 123/146 (84%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFLLDF LRYMN  Y     +  W+G DD PL GFSW+GGSERDTTGILMWS V
Sbjct: 113 AFRKGKSFLLDFFLRYMNSQYNNNNQTDSWLGQDDEPLSGFSWKGGSERDTTGILMWSKV 172

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           +  TLP GEK AVIL+DTQG FDS+STV+DCATVFALSTMLSS+QIYNLSQNIQEDDLQH
Sbjct: 173 FCGTLPDGEKIAVILMDTQGAFDSQSTVKDCATVFALSTMLSSVQIYNLSQNIQEDDLQH 232

Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLAL  +G  PFQ+LQFL
Sbjct: 233 LQLFTEYGRLALQKSGVTPFQKLQFL 258

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
FB|FBgn0039213	541	atl "atlastin" [Drosophila mel	0.516	0.268	0.787	1.2e-58
UNIPROTKB|Q58D72	558	ATL1 "Atlastin-1" [Bos taurus	0.501	0.252	0.698	8.3e-51
UNIPROTKB|F1SHX5	558	ATL1 "Uncharacterized protein"	0.501	0.252	0.705	1.1e-50
UNIPROTKB|F1NAM6	546	ATL1 "Uncharacterized protein"	0.501	0.258	0.705	1.1e-50
UNIPROTKB|Q60HD2	558	ATL1 "Atlastin-1" [Macaca fasc	0.501	0.252	0.705	1.1e-50
UNIPROTKB|F8WD04	558	ATL1 "Atlastin-1" [Homo sapien	0.501	0.252	0.698	1.3e-50
UNIPROTKB|Q8WXF7	558	ATL1 "Atlastin-1" [Homo sapien	0.501	0.252	0.698	1.3e-50
UNIPROTKB|Q5R4P1	558	ATL1 "Atlastin-1" [Pongo abeli	0.501	0.252	0.698	1.3e-50
ZFIN|ZDB-GENE-030131-6505	624	atl2 "atlastin GTPase 2" [Dani	0.569	0.256	0.630	3.6e-50
UNIPROTKB|E2R653	561	E2R653 "Uncharacterized protei	0.501	0.251	0.698	4.6e-50

FB|FBgn0039213 atl "atlastin" [Drosophila melanogaster (taxid:7227)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 115/146 (78%), Positives = 126/146 (86%)

Query:   136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
             AFRKGKSFLLDF LRYM   Y+    + DW+G +  PLEGFSWRGGSERDTTGILMWS +
Sbjct:    46 AFRKGKSFLLDFFLRYMYSKYVHHDAT-DWLGGESDPLEGFSWRGGSERDTTGILMWSDI 104

Query:   196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
             ++   P G+K A+ILLDTQG FDS+STVRDCATVFALSTMLSS+QIYNLSQNIQEDDLQH
Sbjct:   105 FLHDYPNGDKIAIILLDTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQH 164

Query:   256 LQLFTEYGRLALADTGTKPFQRLQFL 281
             LQLFTEYGRLALADTG KPFQRLQFL
Sbjct:   165 LQLFTEYGRLALADTGKKPFQRLQFL 190

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0031114 "regulation of microtubule depolymerization" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0003924 "GTPase activity" evidence=IMP;IDA

GO:0016320 "endoplasmic reticulum membrane fusion" evidence=IDA;IMP

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IDA

GO:0061025 "membrane fusion" evidence=IDA

GO:0032561 "guanyl ribonucleotide binding" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IMP

UNIPROTKB|Q58D72 ATL1 "Atlastin-1" [Bos taurus (taxid:9913)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 102/146 (69%), Positives = 122/146 (83%)

Query:   136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
             AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct:    75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDHNEPLTGFSWRGGSERETTGIQIWSEI 129

Query:   196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
             ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct:   130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189

Query:   256 LQLFTEYGRLALADTGTKPFQRLQFL 281
             LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct:   190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

GO:0051260 "protein homooligomerization" evidence=ISS

GO:0007029 "endoplasmic reticulum organization" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0000137 "Golgi cis cisterna" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0030424 "axon" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|F1SHX5 ATL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 103/146 (70%), Positives = 122/146 (83%)

Query:   136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
             AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS V
Sbjct:    75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEV 129

Query:   196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
             ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct:   130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189

Query:   256 LQLFTEYGRLALADTGTKPFQRLQFL 281
             LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct:   190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|F1NAM6 ATL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 103/146 (70%), Positives = 122/146 (83%)

Query:   136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
             AFRKGKSFL+DF+LRYM   Y +EA   DW+G  + PL GFSWRGGSER+TTGI +WS V
Sbjct:    63 AFRKGKSFLMDFMLRYM---YNKEAV--DWVGDYNEPLTGFSWRGGSERETTGIQIWSEV 117

Query:   196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
             ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct:   118 FLVDKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 177

Query:   256 LQLFTEYGRLALADTGTKPFQRLQFL 281
             LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct:   178 LQLFTEYGRLAMEETFLKPFQSLIFL 203

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|Q60HD2 ATL1 "Atlastin-1" [Macaca fascicularis (taxid:9541)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 103/146 (70%), Positives = 122/146 (83%)

Query:   136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
             AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS V
Sbjct:    75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEV 129

Query:   196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
             ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct:   130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189

Query:   256 LQLFTEYGRLALADTGTKPFQRLQFL 281
             LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct:   190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

GO:0000137 "Golgi cis cisterna" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0007029 "endoplasmic reticulum organization" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

GO:0051260 "protein homooligomerization" evidence=ISS

UNIPROTKB|F8WD04 ATL1 "Atlastin-1" [Homo sapiens (taxid:9606)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 102/146 (69%), Positives = 122/146 (83%)

Query:   136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
             AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct:    75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129

Query:   196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
             ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct:   130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189

Query:   256 LQLFTEYGRLALADTGTKPFQRLQFL 281
             LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct:   190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q8WXF7 ATL1 "Atlastin-1" [Homo sapiens (taxid:9606)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 102/146 (69%), Positives = 122/146 (83%)

Query:   136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
             AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct:    75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129

Query:   196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
             ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct:   130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189

Query:   256 LQLFTEYGRLALADTGTKPFQRLQFL 281
             LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct:   190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

GO:0008219 "cell death" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0042802 "identical protein binding" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0007409 "axonogenesis" evidence=ISS

GO:0000137 "Golgi cis cisterna" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0003924 "GTPase activity" evidence=IDA

GO:0007029 "endoplasmic reticulum organization" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA

UNIPROTKB|Q5R4P1 ATL1 "Atlastin-1" [Pongo abelii (taxid:9601)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 102/146 (69%), Positives = 122/146 (83%)

Query:   136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
             AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct:    75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129

Query:   196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
             ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct:   130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189

Query:   256 LQLFTEYGRLALADTGTKPFQRLQFL 281
             LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct:   190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

GO:0000137 "Golgi cis cisterna" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0007029 "endoplasmic reticulum organization" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

GO:0051260 "protein homooligomerization" evidence=ISS

ZFIN|ZDB-GENE-030131-6505 atl2 "atlastin GTPase 2" [Danio rerio (taxid:7955)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 104/165 (63%), Positives = 123/165 (74%)

Query:   117 ILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGF 176
             IL+  HV    +       AFRKGKSFLLDF+LRYM   + + A S  W+G DD PL GF
Sbjct:   124 ILLQEHVKDLNVVVVSVAGAFRKGKSFLLDFMLRYM---HDQSAES--WIGGDDEPLTGF 178

Query:   177 SWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTML 236
             SWRGG ER+TTGI  WS V++     G K AV+L+DTQG FDS+ST++DCATVFALSTM 
Sbjct:   179 SWRGGCERETTGIQAWSEVFVVEKKDGTKVAVLLVDTQGAFDSQSTIKDCATVFALSTMT 238

Query:   237 SSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFL 281
             SS+Q+YNLSQNIQEDDLQHLQLFTEYGRLA+ +   KPFQ+L FL
Sbjct:   239 SSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYEKPFQKLLFL 283

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|E2R653 E2R653 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 102/146 (69%), Positives = 121/146 (82%)

Query:   136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
             AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS V
Sbjct:    75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEV 129

Query:   196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
             ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct:   130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189

Query:   256 LQLFTEYGRLALADTGTKPFQRLQFL 281
             LQLFTEYGRLA+ +   KPFQ L FL
Sbjct:   190 LQLFTEYGRLAMEEIFLKPFQSLIFL 215

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q58D72	ATLA1_BOVIN	3, ., 6, ., 5, ., -	0.6986	0.5017	0.2526	yes	N/A
Q8WXF7	ATLA1_HUMAN	3, ., 6, ., 5, ., -	0.6986	0.5017	0.2526	yes	N/A
Q6PA06	ATLA2_MOUSE	3, ., 6, ., 5, ., -	0.6060	0.5693	0.2744	yes	N/A
Q9VC57	ATLAS_DROME	3, ., 6, ., 5, ., -	0.7876	0.5160	0.2680	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.5	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	281
pfam02263	264	pfam02263, GBP, Guanylate-binding protein, N-termi	3e-55
cd01851	224	cd01851, GBP, Guanylate-binding protein (GBP) fami	1e-36
pfam02263	264	pfam02263, GBP, Guanylate-binding protein, N-termi	1e-23
cd01851	224	cd01851, GBP, Guanylate-binding protein (GBP) fami	7e-14

>gnl|CDD|111185 pfam02263, GBP, Guanylate-binding protein, N-terminal domain

 Score =  179 bits (455), Expect = 3e-55
 Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 38/161 (23%)

Query: 134 VSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWS 193
           V  +R GKS+L++FL                        L GFS     E +T GI MW 
Sbjct: 27  VGLYRTGKSYLMNFLAG---------------------KLTGFSLGSTVESETKGIWMWC 65

Query: 194 HVYIATLPTGEKAAVILLDTQGTFD-SESTVRDCATVFALSTMLSSIQIYNLSQNIQEDD 252
             +    P   K  ++LLDT+G  D  +S  ++ A +FAL+T+LSS  +YN SQ I +  
Sbjct: 66  VPH----PNKPKHTLVLLDTEGLGDVEKSDPKNDAWIFALATLLSSTFVYNSSQTINQQA 121

Query: 253 LQHLQLFTE------------YGRLALADTGTKPFQRLQFL 281
           LQ L L TE            YGR+A +      F    + 
Sbjct: 122 LQQLHLVTELTELIRAKSSPRYGRVADSAEFVSFFPDFVWT 162

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 264

>gnl|CDD|206650 cd01851, GBP, Guanylate-binding protein (GBP) family (N-terminal domain)

 Score =  129 bits (327), Expect = 1e-36
 Identities = 51/151 (33%), Positives = 69/151 (45%), Gaps = 28/151 (18%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           +   GKSFLL+ L                         +GF     S++ T GI MWS  
Sbjct: 15  SQSSGKSFLLNHLFGTS---------------------DGFDVMDTSQQTTKGIWMWSDP 53

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVR-DCATVFALSTMLSSIQIYNLSQNIQEDDLQ 254
           +  T   G+K AV+LLDT+GT   E     + A +FAL+T+LSS+ IYN+ Q I  DDL 
Sbjct: 54  FKDT--DGKKHAVLLLDTEGTDGRERGEFENDARLFALATLLSSVLIYNMWQTILGDDLD 111

Query: 255 HLQLFTE----YGRLALADTGTKPFQRLQFL 281
            L    +       LA     +KP   L F+
Sbjct: 112 KLMGLLKTALETLGLAGLHNFSKPKPLLLFV 142

Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach. Length = 224

>gnl|CDD|111185 pfam02263, GBP, Guanylate-binding protein, N-terminal domain

 Score = 96.7 bits (241), Expect = 1e-23
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 29/103 (28%)

Query: 32  KHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSG 91
            H+  L+ EALE +        + VVVV++ G +R GKS+L++FL               
Sbjct: 1   DHQLELNEEALEIL----SAITQPVVVVAIVGLYRTGKSYLMNFLAG------------- 43

Query: 92  DWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKV 134
                    L GFS     E +T GI MW   +    P   K 
Sbjct: 44  --------KLTGFSLGSTVESETKGIWMWCVPH----PNKPKH 74

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 264

>gnl|CDD|206650 cd01851, GBP, Guanylate-binding protein (GBP) family (N-terminal domain)

 Score = 68.9 bits (169), Expect = 7e-14
 Identities = 28/98 (28%), Positives = 34/98 (34%), Gaps = 29/98 (29%)

Query: 50  HVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGG 109
                 VVVVSV G+   GKSFLL+ L                         +GF     
Sbjct: 1   LDVGFPVVVVSVFGSQSSGKSFLLNHLFGTS---------------------DGFDVMDT 39

Query: 110 SERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDF 147
           S++ T GI MWS  +  T      V         LLD 
Sbjct: 40  SQQTTKGIWMWSDPFKDTDGKKHAV--------LLLDT 69

Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach. Length = 224

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	100.0
KOG2037|consensus	552		100.0
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.97
KOG2203|consensus	772		99.31
KOG2037|consensus	552		99.28
PF05879	742	RHD3: Root hair defective 3 GTP-binding protein (R	98.86
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	97.7
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	97.65
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.39
COG1159	298	Era GTPase [General function prediction only]	97.14
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	97.02
PRK00089	292	era GTPase Era; Reviewed	96.98
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	96.73
KOG4181|consensus	491		96.5
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	96.43
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	96.42
PF05879	742	RHD3: Root hair defective 3 GTP-binding protein (R	96.21
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	96.18
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	96.04
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	96.01
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	96.01
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	96.01
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	95.98
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	95.94
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	95.92
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	95.74
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	95.72
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	95.63
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	95.56
PRK12289	352	GTPase RsgA; Reviewed	95.54
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	95.45
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	95.38
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	95.35
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.22
PRK12288	347	GTPase RsgA; Reviewed	95.21
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	95.21
PRK12298	390	obgE GTPase CgtA; Reviewed	95.05
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	94.93
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	94.84
KOG1423|consensus	379		94.81
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	94.79
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	94.74
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	94.73
PRK09563	287	rbgA GTPase YlqF; Reviewed	94.68
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	94.67
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	94.64
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	94.6
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	94.54
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	94.45
TIGR00235	207	udk uridine kinase. Model contains a number of lon	94.41
PRK15494	339	era GTPase Era; Provisional	94.37
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	94.36
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	94.3
PRK00098	298	GTPase RsgA; Reviewed	94.2
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	94.2
PRK05480	209	uridine/cytidine kinase; Provisional	94.1
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	94.09
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	94.04
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	94.0
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	93.95
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	93.94
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	93.89
PRK08233	182	hypothetical protein; Provisional	93.86
PTZ00301	210	uridine kinase; Provisional	93.85
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	93.84
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	93.83
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	93.77
PRK06696	223	uridine kinase; Validated	93.75
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	93.73
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	93.73
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	93.73
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	93.7
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	93.69
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	93.68
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	93.68
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	93.66
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	93.65
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	93.61
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	93.56
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	93.56
COG1084	346	Predicted GTPase [General function prediction only	93.43
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	93.39
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	93.37
PRK07667	193	uridine kinase; Provisional	93.34
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	93.3
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	93.3
PF00005	137	ABC_tran: ABC transporter This structure is on hol	93.29
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	93.27
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	93.25
PRK00093	435	GTP-binding protein Der; Reviewed	93.21
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	93.16
PF13173	128	AAA_14: AAA domain	93.07
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	93.04
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	93.03
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	93.02
PLN03118	211	Rab family protein; Provisional	93.01
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	93.01
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	93.0
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	92.99
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	92.89
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	92.79
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	92.77
PLN02318	656	phosphoribulokinase/uridine kinase	92.77
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	92.66
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	92.64
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	92.64
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	92.63
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	92.59
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	92.57
COG1161	322	Predicted GTPases [General function prediction onl	92.56
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	92.49
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	92.48
smart00382	148	AAA ATPases associated with a variety of cellular	92.45
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	92.44
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	92.41
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	92.34
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	92.33
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	92.3
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	92.29
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	92.28
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	92.26
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	92.26
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	92.23
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	92.21
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	92.2
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	92.2
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	92.18
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	92.17
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	92.17
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	92.16
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	92.15
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	92.14
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	92.1
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	92.09
PRK00300	205	gmk guanylate kinase; Provisional	92.09
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	92.09
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	92.07
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	92.07
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	92.01
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	92.01
cd03269	210	ABC_putative_ATPase This subfamily is involved in	92.01
CHL00071	409	tufA elongation factor Tu	92.0
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	91.99
PRK05439	311	pantothenate kinase; Provisional	91.98
cd00881	189	GTP_translation_factor GTP translation factor fami	91.97
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	91.96
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	91.94
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	91.92
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	91.91
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	91.9
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	91.88
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	91.85
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	91.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	91.8
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	91.79
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	91.79
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	91.79
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	91.78
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	91.77
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	91.77
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	91.76
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	91.76
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	91.75
PF13555	62	AAA_29: P-loop containing region of AAA domain	91.74
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	91.74
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	91.73
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	91.72
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	91.71
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	91.7
PRK09087	226	hypothetical protein; Validated	91.67
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	91.61
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	91.6
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	91.6
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	91.6
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	91.58
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	91.58
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	91.55
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	91.54
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	91.52
COG4240	300	Predicted kinase [General function prediction only	91.51
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	91.5
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	91.48
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	91.46
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	91.45
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	91.42
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	91.42
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	91.4
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	91.38
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	91.38
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	91.36
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	91.36
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	91.36
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	91.36
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	91.34
cd03216	163	ABC_Carb_Monos_I This family represents the domain	91.3
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	91.29
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	91.28
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	91.28
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	91.27
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	91.24
PRK03003	472	GTP-binding protein Der; Reviewed	91.23
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	91.22
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	91.22
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	91.2
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	91.15
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	91.14
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	91.12
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	91.11
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	91.09
cd03246	173	ABCC_Protease_Secretion This family represents the	91.08
PRK12736	394	elongation factor Tu; Reviewed	91.07
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	91.07
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	91.04
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	91.02
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	90.99
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	90.99
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	90.96
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	90.95
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	90.93
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	90.93
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	90.9
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	90.89
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	90.88
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	90.87
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	90.86
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	90.86
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	90.84
PLN03110	216	Rab GTPase; Provisional	90.79
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	90.78
PLN02796	347	D-glycerate 3-kinase	90.77
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	90.77
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	90.73
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	90.73
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	90.72
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	90.7
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	90.68
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	90.66
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	90.66
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	90.65
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	90.65
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	90.64
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	90.64
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	90.61
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	90.61
cd03116	159	MobB Molybdenum is an essential trace element in t	90.61
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	90.58
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	90.56
PRK10908	222	cell division protein FtsE; Provisional	90.55
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	90.54
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	90.54
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	90.54
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	90.53
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	90.52
PRK06547	172	hypothetical protein; Provisional	90.51
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	90.5
cd03234	226	ABCG_White The White subfamily represents ABC tran	90.48
COG3596	296	Predicted GTPase [General function prediction only	90.46
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	90.45
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	90.43
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	90.41
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	90.4
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	90.39
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	90.38
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	90.37
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	90.35
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	90.34
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	90.32
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	90.31
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	90.29
cd03215	182	ABC_Carb_Monos_II This family represents domain II	90.26
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	90.24
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	90.23
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	90.22
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	90.22
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	90.22
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	90.21
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	90.21
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	90.16
PF00004	132	AAA: ATPase family associated with various cellula	90.16
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	90.15
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	90.07
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	90.07
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	90.06
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	90.06
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	90.05
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	90.03
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	90.02
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	90.01
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	90.01
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	90.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	89.98
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	89.96
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	89.96
PRK07261	171	topology modulation protein; Provisional	89.96
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	89.91
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	89.91
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	89.88
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	89.88
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	89.86
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	89.86
PRK09825	176	idnK D-gluconate kinase; Provisional	89.86
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	89.86
PRK12735	396	elongation factor Tu; Reviewed	89.85
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	89.84
TIGR00101	199	ureG urease accessory protein UreG. This model rep	89.84
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	89.83
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	89.83
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	89.82
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	89.79
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	89.78
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	89.77
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	89.76
KOG1547|consensus	336		89.75
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	89.73
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	89.73
PRK09984	262	phosphonate/organophosphate ester transporter subu	89.72
PRK00698	205	tmk thymidylate kinase; Validated	89.71
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	89.7
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	89.7
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	89.7
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	89.69
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	89.69
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	89.68
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	89.68
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	89.67
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	89.64
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	89.63
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	89.62
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	89.61
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	89.6
COG4559	259	ABC-type hemin transport system, ATPase component	89.59
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	89.58
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	89.57
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	89.53
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	89.52
PRK06762	166	hypothetical protein; Provisional	89.52
cd01896	233	DRG The developmentally regulated GTP-binding prot	89.5
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	89.46
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	89.46
PLN02348	395	phosphoribulokinase	89.46
COG4136	213	ABC-type uncharacterized transport system, ATPase	89.44
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	89.44
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	89.42
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	89.41
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	89.4
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	89.4
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	89.37
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	89.36
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	89.34
PRK07429	327	phosphoribulokinase; Provisional	89.34
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	89.32
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	89.32
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	89.32
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	89.3
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	89.29
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	89.29
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	89.28
KOG2485|consensus	335		89.27
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	89.27
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	89.26
PLN03046	460	D-glycerate 3-kinase; Provisional	89.26
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	89.25
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	89.25
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	89.2
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	89.2
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	89.2
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	89.19
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	89.19
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	89.01
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	89.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	88.99
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	88.96
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	88.95
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	88.93
PRK14731	208	coaE dephospho-CoA kinase; Provisional	88.91
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	88.89
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	88.88
COG5019	373	CDC3 Septin family protein [Cell division and chro	88.87
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	88.85
PRK09435	332	membrane ATPase/protein kinase; Provisional	88.84
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	88.82
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	88.81
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	88.8
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	88.79
PRK04182	180	cytidylate kinase; Provisional	88.74
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	88.68
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	88.65
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	88.64
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	88.64
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	88.62
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	88.61
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	88.6
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	88.6
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	88.58
PRK08118	167	topology modulation protein; Reviewed	88.55
PF05729	166	NACHT: NACHT domain	88.53
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	88.53
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	88.51
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	88.5
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	88.49
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	88.47
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	88.47
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	88.44
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	88.39
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	88.36
PRK03695	248	vitamin B12-transporter ATPase; Provisional	88.35
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	88.34
PRK04213	201	GTP-binding protein; Provisional	88.34
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	88.33
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	88.28
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	88.22
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	88.21
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	88.2
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	88.13
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	88.08
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	88.06
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	87.95
KOG0410|consensus	410		87.95
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	87.86
PRK04040	188	adenylate kinase; Provisional	87.85
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	87.84
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	87.84
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	87.84
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	87.82
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	87.8
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	87.73
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	87.73
PRK05541	176	adenylylsulfate kinase; Provisional	87.73
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	87.73
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	87.73
PRK10218	607	GTP-binding protein; Provisional	87.67
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	87.66
PRK10938	490	putative molybdenum transport ATP-binding protein	87.65
COG1100	219	GTPase SAR1 and related small G proteins [General	87.65
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	87.63
PRK05433	600	GTP-binding protein LepA; Provisional	87.57
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	87.56
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	87.52
PLN03108	210	Rab family protein; Provisional	87.52
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	87.5
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	87.46
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	87.44
PRK00049	396	elongation factor Tu; Reviewed	87.43
PRK13546	264	teichoic acids export protein ATP-binding subunit;	87.41
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	87.4
PLN03127	447	Elongation factor Tu; Provisional	87.4
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	87.4
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	87.38
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	87.32
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	87.19
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	87.19
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	87.18
PRK15467	158	ethanolamine utilization protein EutP; Provisional	87.18
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	87.14
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	87.11
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	87.06
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	87.04
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	87.01
KOG2655|consensus	366		86.99
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	86.86
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	86.85
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	86.85
PRK14737	186	gmk guanylate kinase; Provisional	86.84
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	86.8
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	86.79
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	86.75
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	86.74
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	86.74
PRK14738	206	gmk guanylate kinase; Provisional	86.73
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	86.72
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	86.69
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	86.67
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	86.61
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	86.6
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	86.59
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	86.58
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	86.57
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	86.46
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	86.45
cd01881	176	Obg_like The Obg-like subfamily consists of five w	86.45
COG0486	454	ThdF Predicted GTPase [General function prediction	86.44
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	86.43
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	86.4
PRK00889	175	adenylylsulfate kinase; Provisional	86.37
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	86.28
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	86.25
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	86.25
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	86.23
PRK14730	195	coaE dephospho-CoA kinase; Provisional	86.22
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	86.13
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	86.12
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	86.11
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	86.06
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	86.05
PRK10261	623	glutathione transporter ATP-binding protein; Provi	86.02
PRK08356	195	hypothetical protein; Provisional	86.01
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	85.97
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	85.91
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	85.87
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	85.78

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=100.00  E-value=1.3e-43  Score=325.13  Aligned_cols=149  Identities=50%  Similarity=0.725  Sum_probs=130.1

Q ss_pred             CceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCcccCCCCc
Q psy5031          32 KHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSE  111 (281)
Q Consensus        32 ~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e  111 (281)
                      +++|++|+||++.| .   ..++||+||||+|+||||||||||+|++                                 
T Consensus         1 ~~~~~~~~~al~~l-~---~~~~~v~vvsi~G~~rtGKSfLln~l~~---------------------------------   43 (260)
T PF02263_consen    1 DNKLELNEEALEIL-Q---QIDQPVAVVSIVGPYRTGKSFLLNQLLG---------------------------------   43 (260)
T ss_dssp             TTEEEE-HHHHHHH-C---TTTSBEEEEEEEEETTSSHHHHHHHHCC---------------------------------
T ss_pred             CCeEEECHHHHHHH-h---cCCCCEEEEEeecCCccchHHHHHHHhc---------------------------------
Confidence            58999999999966 2   3689999999999999999999999942                                 


Q ss_pred             ccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccCCCCCCcccceEe
Q psy5031         112 RDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILM  191 (281)
Q Consensus       112 ~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~~~~~~~TkGIWm  191 (281)
                                                                                  ...||+|+++.++||+||||
T Consensus        44 ------------------------------------------------------------~~~gF~~~~~~~~~T~Giw~   63 (260)
T PF02263_consen   44 ------------------------------------------------------------PQSGFSWGPTVEPCTKGIWM   63 (260)
T ss_dssp             ------------------------------------------------------------BSSSSESSSCSSST-SCEEE
T ss_pred             ------------------------------------------------------------ccccccccCCCCCCCcceee
Confidence                                                                        13799999999999999999


Q ss_pred             eecceeecCCCCCceEEEEEecCCCCC-CCcCcccchhhHHHHHhhhhhhhhccCCCCChhhhhHhHHHHHHHHHHh---
Q psy5031         192 WSHVYIATLPTGEKAAVILLDTQGTFD-SESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLAL---  267 (281)
Q Consensus       192 Ws~P~~~~~~~g~~v~VlLlDTEG~~d-~~~s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~~L~l~t~~a~~i~---  267 (281)
                      |++|    .+.+++++|+||||||++| ...+..+|++||+|++||||++|||+++.|++++|++|++++++|++|+   
T Consensus        64 w~~~----~~~~~~~~v~llDteG~~~~~~~~~~~d~~if~Ls~LLSS~~IyN~~~~i~~~~l~~L~~~~~l~~~i~~~~  139 (260)
T PF02263_consen   64 WSEP----LPDGEKVAVVLLDTEGLGDVEQSDEKYDAKIFALSMLLSSVLIYNSMGNIDEDDLDQLELFTELAKHIRVKY  139 (260)
T ss_dssp             ECCE-----TTSTCEEEEEEEEECBTTTTCCCCHHCHHHHHHHHHH-SEEEEEECSSSSHHHHHCCHHHHHHHHHHHHTH
T ss_pred             eecc----cccccceeEEEecchhccccccCcccccHHHHHHHHHHhCceeeCCCCccchhHHHHHHHHHHHHHHHHHhc
Confidence            9999    3688899999999999999 4556788999999999999999999999999999999999999998764   


Q ss_pred             -----hccCCCCCcccccC
Q psy5031         268 -----ADTGTKPFQRLQFL  281 (281)
Q Consensus       268 -----~~~~~~pfq~L~fl  281 (281)
                           .+....|||+|.||
T Consensus       140 ~~~~~~~~~~~~fp~l~wl  158 (260)
T PF02263_consen  140 GDSADSEDLGKPFPSLVWL  158 (260)
T ss_dssp             HHHHHHHCTTTTCEEEEEE
T ss_pred             ccccchhhhcccchHHHHH
Confidence                 34468999999886

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>KOG2037|consensus

Probab=100.00  E-value=1.6e-36  Score=302.75  Aligned_cols=214  Identities=46%  Similarity=0.666  Sum_probs=192.3

Q ss_pred             EEEEeCCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCc
Q psy5031          25 QIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGF  104 (281)
Q Consensus        25 qLV~~~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f  104 (281)
                      +.+..|..+++.+|| |++.+ +   ...+||+||+|+|.||+||||+||.++..                     ..+|
T Consensus         6 ~~~~~~~~~~l~~~p-a~~~l-~---~~~~p~~Vv~i~g~~~~gksfiln~la~~---------------------~~gf   59 (552)
T KOG2037|consen    6 MLLYENENGQLKVNP-ALEIL-Q---AIKQPVAVVAIVGLYRTGKSFILNQLAGK---------------------RIGF   59 (552)
T ss_pred             hhhhhccccccccCc-chhHH-h---hccCCceEEEEEEEEcCCCceehhhhHhh---------------------hcCC
Confidence            344446789999999 99844 3   24689999999999999999999999754                     3689


Q ss_pred             ccCCCCcccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccCCCCCC
Q psy5031         105 SWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSER  184 (281)
Q Consensus       105 ~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~~~~~~  184 (281)
                      .+..++.|+|.|||||+.|               .||||++|++|.++.-.++ +..+.+|.. ...++.+|.|+.++++
T Consensus        60 ~~~s~~~~~~~~~w~w~~p---------------~~k~~~~~l~Lld~eg~~~-~~~~~~w~~-~~~~l~~~~~~~~s~~  122 (552)
T KOG2037|consen   60 SVASTDKPVTKGIWMWCVP---------------HGKSFLLNLVLLDTEGLKG-DNENDDWIF-ALAPLLSSTWVYGSEG  122 (552)
T ss_pred             CcccccccceeeEEEEEee---------------cCCccchhhhhhccccccC-Cccchhhhh-ccchhhcceeeccCCc
Confidence            9999999999999999755               6899999999999731111 255789998 6788999999999999


Q ss_pred             cccceEeeecceeecCCCCCceEEEEEecCCCCCCCcCcccchhhHHHHHhhhhhhhhccCCCCChhhhhHhHHHHHHHH
Q psy5031         185 DTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGR  264 (281)
Q Consensus       185 ~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~~L~l~t~~a~  264 (281)
                      .|.|||||+.||+.+.++|.++++.++||+|.++...+...+...|++++++||+.|||....|+++++++|++++++++
T Consensus       123 ~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~~~~~~~~~~~p~fa~tt~~~slqi~~~~q~i~ed~l~~l~l~~~~g~  202 (552)
T KOG2037|consen  123 TINGIAMWQLPFVTELTEGIKVASSLMDTQGAFDDQSTFRSCFPDFALTTMDSSLQIYNDSQNIQEDDLQHLSLFTEYGR  202 (552)
T ss_pred             ccchheecccceeeecCCcceeccccccccccccccccHHHhcchhhceeeeeehhhhcccCcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCcccccC
Q psy5031         265 LALADTGTKPFQRLQFL  281 (281)
Q Consensus       265 ~i~~~~~~~pfq~L~fl  281 (281)
                      .+..+...+|||+|+||
T Consensus       203 ~~l~~~~~kp~q~L~~~  219 (552)
T KOG2037|consen  203 LALAHLFKKPFQDLKFL  219 (552)
T ss_pred             HHHHHhccCcHHHHHHH
Confidence            99999999999999985

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.97  E-value=2.3e-30  Score=232.66  Aligned_cols=104  Identities=40%  Similarity=0.496  Sum_probs=93.6

Q ss_pred             CCcccCCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCCCCcCc-ccchhhHHHHHhhhhhhhhccCCCCChhh
Q psy5031         174 EGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTV-RDCATVFALSTMLSSIQIYNLSQNIQEDD  252 (281)
Q Consensus       174 ~gF~~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~s~-~~d~~IFaLs~LLSS~~IYNs~~~Ide~~  252 (281)
                      .+|+++++..+||+|||||..|+..    +++.+|+||||||+.+.+++. .++++||+|++|+||++|||+.+.+++.+
T Consensus        32 ~~f~~~~~~~~~T~gi~~~~~~~~~----~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~~~~  107 (224)
T cd01851          32 SGFDVMDTSQQTTKGIWMWSVPFKL----GKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETILGDD  107 (224)
T ss_pred             CCeEecCCCCCCccceEEEeccccC----CCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcccHHH
Confidence            5899999999999999999999964    566889999999999999988 89999999999999999999999999999


Q ss_pred             hhHhHHHHHHH----HHHhhccCCCCCcccccC
Q psy5031         253 LQHLQLFTEYG----RLALADTGTKPFQRLQFL  281 (281)
Q Consensus       253 L~~L~l~t~~a----~~i~~~~~~~pfq~L~fl  281 (281)
                      +++|+.+++.+    +.+......+||++|.|+
T Consensus       108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~v  140 (224)
T cd01851         108 LAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFV  140 (224)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhcccCCCceEEE
Confidence            99999999975    344556789999999874

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG2203|consensus

Probab=99.31  E-value=2.9e-12  Score=128.40  Aligned_cols=155  Identities=23%  Similarity=0.386  Sum_probs=105.0

Q ss_pred             CCCeeEEEEeCCCceEEeCHHHHHHHHcccCCC--CceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCC
Q psy5031          20 QYGAIQIVKSEEKHKFILDYEALERILLQDHVK--DKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPD   97 (281)
Q Consensus        20 ~~~pvqLV~~~~~~~l~ln~eal~~il~~~~~~--~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~   97 (281)
                      ...+.|||  +++++  +|..+|..+.+...+.  +-.++||||.|++.||||+|||+|.+-                  
T Consensus         3 dr~stQlI--De~ke--Fn~s~l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgT------------------   60 (772)
T KOG2203|consen    3 DRCSTQLI--DEEKE--FNVSGLDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGT------------------   60 (772)
T ss_pred             Ccccceee--ccccc--cchhhHHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhcc------------------
Confidence            45678999  45555  7777887765532222  678999999999999999999999532                  


Q ss_pred             CCCCCCcccCCCCcccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcc
Q psy5031          98 DVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFS  177 (281)
Q Consensus        98 ~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~  177 (281)
                           +|.                           +++||+                                       
T Consensus        61 -----nF~---------------------------~MDA~~---------------------------------------   69 (772)
T KOG2203|consen   61 -----NFR---------------------------EMDAFK---------------------------------------   69 (772)
T ss_pred             -----ChH---------------------------HHHhhh---------------------------------------
Confidence                 111                           233332                                       


Q ss_pred             cCCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCCCCc----CcccchhhHHHHHhhhhhhhhccC----CCCC
Q psy5031         178 WRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES----TVRDCATVFALSTMLSSIQIYNLS----QNIQ  249 (281)
Q Consensus       178 ~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~----s~~~d~~IFaLs~LLSS~~IYNs~----~~Id  249 (281)
                         |++..|+|||+-.       ..|-+..+++||.||..+.++    +++..+.|||++  .|-++|.|..    |.-+
T Consensus        70 ---gRqQTTKGIWlar-------~~~i~p~i~vmDvEGTDGrERGEDqdFErksALFaia--vSevvivNMW~~qIG~~Q  137 (772)
T KOG2203|consen   70 ---GRQQTTKGIWLAR-------CAGIEPCILVMDVEGTDGRERGEDQDFERKSALFAIA--VSEVVIVNMWEHQIGLYQ  137 (772)
T ss_pred             ---ccccccchhhHHh-------hcCCCCceEEEecccCCcccccccccHHHHhHHHHHh--hhheehhhHHHHHhhHhh
Confidence               3456899999842       134445699999999988866    556689999988  5999999973    3444


Q ss_pred             hhhhhHhH----HHHHH----HH------HHhhccCCCCCcccc
Q psy5031         250 EDDLQHLQ----LFTEY----GR------LALADTGTKPFQRLQ  279 (281)
Q Consensus       250 e~~L~~L~----l~t~~----a~------~i~~~~~~~pfq~L~  279 (281)
                      .+..--|.    ++.++    -+      .|+++-+.+|.-+|.
T Consensus       138 ~aN~~LLKTVfeV~lrLF~~rk~k~~LlFVIRD~~~~TplenLe  181 (772)
T KOG2203|consen  138 GANMALLKTVFEVNLRLFSPRKNKTLLLFVIRDKTGVTPLENLE  181 (772)
T ss_pred             ccCcHHHHHHHHHHHHHhCCCCCceEEEEEEecccCCCchHHhh
Confidence            44444333    22332    11      357777888887763

>KOG2037|consensus

Probab=99.28  E-value=3.2e-12  Score=128.85  Aligned_cols=116  Identities=29%  Similarity=0.368  Sum_probs=99.7

Q ss_pred             cCCCCCeeEEEEe--CCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCC
Q psy5031          17 SLPQYGAIQIVKS--EEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWM   94 (281)
Q Consensus        17 ~~~~~~pvqLV~~--~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~   94 (281)
                      ....|.||+.|-.  +.++.|.+|+.|++.|+.+....++|+++++++|.+|.||||++|++|+++.... -+..+.+|.
T Consensus        27 ~~~~p~~Vv~i~g~~~~gksfiln~la~~~~gf~~~s~~~~~~~~~w~w~~p~~k~~~~~l~Lld~eg~~-~~~~~~~w~  105 (552)
T KOG2037|consen   27 AIKQPVAVVAIVGLYRTGKSFILNQLAGKRIGFSVASTDKPVTKGIWMWCVPHGKSFLLNLVLLDTEGLK-GDNENDDWI  105 (552)
T ss_pred             hccCCceEEEEEEEEcCCCceehhhhHhhhcCCCcccccccceeeEEEEEeecCCccchhhhhhcccccc-CCccchhhh
Confidence            3567888888877  6788999999999999998888899999999999999999999999999987642 223456888


Q ss_pred             CCCCCCCCCcccCCCCcccccceeeeeceEEeecCCcccc
Q psy5031          95 GPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKV  134 (281)
Q Consensus        95 ~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~  134 (281)
                      . .-.+.-+|.|+.+.++.|.|||||++++++....|.++
T Consensus       106 ~-~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~  144 (552)
T KOG2037|consen  106 F-ALAPLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKV  144 (552)
T ss_pred             h-ccchhhcceeeccCCcccchheecccceeeecCCccee
Confidence            7 56788899999999999999999999999976666653

>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins

Probab=98.86  E-value=1.4e-09  Score=113.73  Aligned_cols=117  Identities=27%  Similarity=0.424  Sum_probs=81.2

Q ss_pred             chhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccCC--CCCCcccceEeeecceeecCCCCCceEEEEE
Q psy5031         134 VSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRG--GSERDTTGILMWSHVYIATLPTGEKAAVILL  211 (281)
Q Consensus       134 ~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~~--~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLl  211 (281)
                      +|++.+|||+|||.|.+.                       .|.+..  ++.+||+||||-.-+...    .....+++|
T Consensus         1 ~g~qssgkstlln~lf~t-----------------------~f~~m~~~~r~qtt~gi~~~~~~~~~----~~~~~~~v~   53 (742)
T PF05879_consen    1 FGSQSSGKSTLLNHLFGT-----------------------QFDVMDESGRQQTTKGIWMAKAKEVE----SSESNILVL   53 (742)
T ss_pred             CCCCCCcHHHHHHHHHCC-----------------------CccccccccccccchhhHHHhccccc----cCCCceEEE
Confidence            478899999999999884                       466544  567899999995433321    223569999


Q ss_pred             ecCCCCCCCc----CcccchhhHHHHHhhhhhhhhcc----CCCCChhhhhHh--------HHHHHHH----H-----HH
Q psy5031         212 DTQGTFDSES----TVRDCATVFALSTMLSSIQIYNL----SQNIQEDDLQHL--------QLFTEYG----R-----LA  266 (281)
Q Consensus       212 DTEG~~d~~~----s~~~d~~IFaLs~LLSS~~IYNs----~~~Ide~~L~~L--------~l~t~~a----~-----~i  266 (281)
                      |+||..+.++    ++++.+.||||+  +|.++|.|.    .|..+.+.+.-|        ++|..-.    +     .|
T Consensus        54 d~eg~d~~er~~~~~fe~~~alf~la--~s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfvi  131 (742)
T PF05879_consen   54 DVEGTDGRERGEDQDFERKSALFALA--VSDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVI  131 (742)
T ss_pred             eCCCCCchhhccccchHHHHHHHHHH--hhhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEE
Confidence            9999988866    455678899887  599999999    355555555444        4442211    0     24


Q ss_pred             hhccCCCCCcccc
Q psy5031         267 LADTGTKPFQRLQ  279 (281)
Q Consensus       267 ~~~~~~~pfq~L~  279 (281)
                      +|+.+.+|+.+|.
T Consensus       132 RD~~~~tp~e~l~  144 (742)
T PF05879_consen  132 RDHTGVTPLENLE  144 (742)
T ss_pred             eeCCCCCcHHHHH
Confidence            7777778887663

It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=97.70  E-value=0.00019  Score=62.41  Aligned_cols=21  Identities=24%  Similarity=0.213  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+++|..++|||.|+|.|++.
T Consensus         3 i~lvG~~g~GKSsl~N~ilg~   23 (196)
T cd01852           3 LVLVGKTGAGKSATGNTILGR   23 (196)
T ss_pred             EEEECCCCCCHHHHHHHhhCC
Confidence            678999999999999999743

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=97.65  E-value=0.00019  Score=63.91  Aligned_cols=60  Identities=25%  Similarity=0.354  Sum_probs=30.4

Q ss_pred             eEEEEEecCCCCCCCcCcccc-hhhHHHHHhhhh----hhhhcc-CCCCChhhhhHhHHHHHH-HHHH
Q psy5031         206 AAVILLDTQGTFDSESTVRDC-ATVFALSTMLSS----IQIYNL-SQNIQEDDLQHLQLFTEY-GRLA  266 (281)
Q Consensus       206 v~VlLlDTEG~~d~~~s~~~d-~~IFaLs~LLSS----~~IYNs-~~~Ide~~L~~L~l~t~~-a~~i  266 (281)
                      ..|.++||+|+++...+...- ..|.. +..++.    .+||=+ .+.+++.+...++.+.++ +..+
T Consensus        49 ~~v~VIDTPGl~d~~~~~~~~~~~i~~-~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~  115 (212)
T PF04548_consen   49 RQVTVIDTPGLFDSDGSDEEIIREIKR-CLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI  115 (212)
T ss_dssp             EEEEEEE--SSEETTEEHHHHHHHHHH-HHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG
T ss_pred             eEEEEEeCCCCCCCcccHHHHHHHHHH-HHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH
Confidence            568999999998886642211 11211 112222    222222 237888888888777763 4433

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.39  E-value=0.0007  Score=53.65  Aligned_cols=20  Identities=35%  Similarity=0.431  Sum_probs=18.3

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |+|+|+.++|||+|+|.|++
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68999999999999999974

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1159 Era GTPase [General function prediction only]

Probab=97.14  E-value=0.001  Score=63.33  Aligned_cols=27  Identities=30%  Similarity=0.273  Sum_probs=24.1

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+...|||+|...+|||+|||+|+++
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~   29 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQ   29 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcC
Confidence            356789999999999999999999865

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=97.02  E-value=0.0042  Score=57.30  Aligned_cols=26  Identities=19%  Similarity=0.218  Sum_probs=21.9

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+-.-|.++|..++|||.|+|.|++.
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~   54 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGE   54 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence            45567889999999999999999753

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK00089 era GTPase Era; Reviewed

Probab=96.98  E-value=0.0029  Score=58.38  Aligned_cols=26  Identities=31%  Similarity=0.289  Sum_probs=22.9

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+-.+|+|+|+.++|||+|+|.|++.
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~g~   28 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALVGQ   28 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhCC
Confidence            45788999999999999999999754

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=96.73  E-value=0.00086  Score=61.94  Aligned_cols=21  Identities=52%  Similarity=0.898  Sum_probs=18.9

Q ss_pred             CcccCCCCcccccceeeeece
Q psy5031         103 GFSWRGGSERDTTGILMWSHV  123 (281)
Q Consensus       103 ~f~~~~~~e~~t~gi~~~s~~  123 (281)
                      +|+|+++.+|+|.|||||+.|
T Consensus        47 gF~~~~~~~~~T~Giw~w~~~   67 (260)
T PF02263_consen   47 GFSWGPTVEPCTKGIWMWSEP   67 (260)
T ss_dssp             SSESSSCSSST-SCEEEECCE
T ss_pred             cccccCCCCCCCcceeeeecc
Confidence            489999999999999999988

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>KOG4181|consensus

Probab=96.50  E-value=0.003  Score=61.83  Aligned_cols=49  Identities=20%  Similarity=0.260  Sum_probs=36.5

Q ss_pred             CeeEEEEeCCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031          22 GAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        22 ~pvqLV~~~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ++++||  ++.|.  +|..|.+.+..     ...+-||||.|+++||||+|||.|..+
T Consensus       163 ~s~~li--~d~g~--~~d~a~~ll~~-----~tdf~VIgvlG~QgsGKStllslLaan  211 (491)
T KOG4181|consen  163 RSTPLI--VDNGI--FNDNARKLLHK-----TTDFTVIGVLGGQGSGKSTLLSLLAAN  211 (491)
T ss_pred             CCccee--ecccc--hhhHHHHHhhc-----CCCeeEEEeecCCCccHHHHHHHHhcc
Confidence            355666  33343  67778875443     356999999999999999999999754

>cd01858 NGP_1 NGP-1

Probab=96.43  E-value=0.0051  Score=51.64  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=18.7

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ++.++.+....+.|..-|++.+..++
T Consensus        69 ~~~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          69 PTIAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             cEEEEEeeccccccHHHHHHHHHHHH
Confidence            44456666777788888888887654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00436 era GTP-binding protein Era

Probab=96.42  E-value=0.0051  Score=56.55  Aligned_cols=22  Identities=36%  Similarity=0.366  Sum_probs=19.8

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .|+++|+..+|||+|+|+|++.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~   23 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQ   23 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins

Probab=96.21  E-value=0.0018  Score=68.34  Aligned_cols=38  Identities=34%  Similarity=0.441  Sum_probs=28.3

Q ss_pred             ecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCcccCC--CCcccccceeeeec
Q psy5031          62 AGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRG--GSERDTTGILMWSH  122 (281)
Q Consensus        62 ~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~e~~t~gi~~~s~  122 (281)
                      .|++.||||+|||+|.+-                       .|++-+  +.+.+|+||||-..
T Consensus         1 ~g~qssgkstlln~lf~t-----------------------~f~~m~~~~r~qtt~gi~~~~~   40 (742)
T PF05879_consen    1 FGSQSSGKSTLLNHLFGT-----------------------QFDVMDESGRQQTTKGIWMAKA   40 (742)
T ss_pred             CCCCCCcHHHHHHHHHCC-----------------------CccccccccccccchhhHHHhc
Confidence            499999999999999642                       244433  35579999999653

It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=96.18  E-value=0.029  Score=47.81  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=20.8

Q ss_pred             ceEEEEEEecccccChhHHHHHHHH
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      ....-|.|+|+.++|||+|+|+|.+
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~   40 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTN   40 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence            3445678999999999999999964

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=96.04  E-value=0.015  Score=48.84  Aligned_cols=26  Identities=4%  Similarity=-0.012  Sum_probs=20.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +..++.+....+.|-..|++.++...
T Consensus        59 ~~~ii~vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          59 PTIPFKISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             CceEEEEeccCCcChhhHHHHHHHHh
Confidence            34567777778889999999988764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=96.01  E-value=0.032  Score=58.71  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=19.9

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.++|..+.|||.|+|.|++.
T Consensus       119 lrIvLVGKTGVGKSSLINSILGe  141 (763)
T TIGR00993       119 LNILVLGKSGVGKSATINSIFGE  141 (763)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcc
Confidence            35889999999999999999754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=96.01  E-value=0.014  Score=58.53  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=20.2

Q ss_pred             EEEecccccChhHHHHHHHHhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |+|+||-|||||+|+|+|.+.+
T Consensus        20 IGvvGpvrtGKSTfIn~fm~q~   41 (492)
T TIGR02836        20 IGVVGPVRTGKSTFIKKFMELL   41 (492)
T ss_pred             EEEEcCCCCChHHHHHHHHhhh
Confidence            6889999999999999999874

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=96.01  E-value=0.0043  Score=51.71  Aligned_cols=21  Identities=48%  Similarity=0.683  Sum_probs=19.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|.+.+|||+|+|.|++.
T Consensus         1 V~v~G~~ssGKSTliNaLlG~   21 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGR   21 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTS
T ss_pred             CEEEcCCCCCHHHHHHHHHhc
Confidence            789999999999999999875

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01898 Obg Obg subfamily

Probab=95.98  E-value=0.061  Score=44.28  Aligned_cols=20  Identities=35%  Similarity=0.404  Sum_probs=18.2

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |+|+|...+|||+|+|+|.+
T Consensus         3 v~ivG~~~~GKStl~~~l~~   22 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISN   22 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999964

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=95.94  E-value=0.028  Score=46.17  Aligned_cols=19  Identities=21%  Similarity=0.356  Sum_probs=17.5

Q ss_pred             EEEecccccChhHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll   77 (281)
                      |.|+|+.++|||.|+++|.
T Consensus         3 i~vvG~~~~GKtsl~~~l~   21 (164)
T cd04101           3 CAVVGDPAVGKTAFVQMFH   21 (164)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6789999999999999986

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=95.92  E-value=0.011  Score=51.21  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=18.9

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+++|...+|||+|.|+|.+.
T Consensus         3 ialvG~PNvGKStLfN~Ltg~   23 (156)
T PF02421_consen    3 IALVGNPNVGKSTLFNALTGA   23 (156)
T ss_dssp             EEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            789999999999999999654

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=95.74  E-value=0.0098  Score=51.93  Aligned_cols=22  Identities=32%  Similarity=0.302  Sum_probs=19.0

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ++.++|+.+.|||+|+|.|+..
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5667899999999999999755

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=95.72  E-value=0.0096  Score=47.11  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.9

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ||.|+|+.+||||++++.|.+.+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Confidence            789999999999999999998753

...

>cd01890 LepA LepA subfamily

Probab=95.63  E-value=0.068  Score=44.60  Aligned_cols=21  Identities=38%  Similarity=0.447  Sum_probs=19.3

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+++|...+|||+|+|+|+..
T Consensus         3 i~~vG~~~~GKssL~~~l~~~   23 (179)
T cd01890           3 FSIIAHIDHGKSTLADRLLEL   23 (179)
T ss_pred             EEEEeecCCCHHHHHHHHHHH
Confidence            789999999999999999865

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01850 CDC_Septin CDC/Septin

Probab=95.56  E-value=0.036  Score=51.68  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=18.8

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|+.++|||+|+|.|+..
T Consensus         6 ~I~vvG~sg~GKSTliN~L~~~   27 (276)
T cd01850           6 NIMVVGESGLGKSTFINTLFNT   27 (276)
T ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Confidence            4678999999999999999643

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK12289 GTPase RsgA; Reviewed

Probab=95.54  E-value=0.022  Score=55.33  Aligned_cols=21  Identities=38%  Similarity=0.387  Sum_probs=16.1

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +.|+|+.+.|||+|+|.|+..
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~  195 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPD  195 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCc
Confidence            677788888888888888643

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=95.45  E-value=0.14  Score=49.18  Aligned_cols=27  Identities=22%  Similarity=0.207  Sum_probs=23.0

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +.+-.-|.|+|..+.|||.++|.|++.
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~   61 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGE   61 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCC
Confidence            456667889999999999999999754

>cd04142 RRP22 RRP22 subfamily

Probab=95.38  E-value=0.11  Score=45.52  Aligned_cols=20  Identities=35%  Similarity=0.423  Sum_probs=18.1

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |+|+|..++|||.|+|+++.
T Consensus         3 I~ivG~~~vGKTsLi~~~~~   22 (198)
T cd04142           3 VAVLGAPGVGKTAIVRQFLA   22 (198)
T ss_pred             EEEECCCCCcHHHHHHHHHc
Confidence            68899999999999999864

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=95.35  E-value=0.037  Score=44.51  Aligned_cols=19  Identities=37%  Similarity=0.476  Sum_probs=17.7

Q ss_pred             EEEecccccChhHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll   77 (281)
                      |+++|+.++|||+|+|.|.
T Consensus         2 i~l~G~~g~GKTtL~~~l~   20 (170)
T cd01876           2 IAFAGRSNVGKSSLINALT   20 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            6889999999999999997

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.22  E-value=0.013  Score=53.78  Aligned_cols=21  Identities=38%  Similarity=0.502  Sum_probs=19.1

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +|+|+||.+||||+|||.+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            789999999999999999943

>PRK12288 GTPase RsgA; Reviewed

Probab=95.21  E-value=0.024  Score=54.87  Aligned_cols=21  Identities=33%  Similarity=0.297  Sum_probs=16.4

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +.++|+.+.|||+|+|.|+..
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~  228 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPE  228 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccc
Confidence            567888888888888888644

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=95.21  E-value=0.017  Score=50.34  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=23.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ||+|+|+.+||||+|++.|...+..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~   25 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNK   25 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCc
Confidence            7999999999999999999998764

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=95.05  E-value=0.14  Score=50.23  Aligned_cols=24  Identities=21%  Similarity=0.193  Sum_probs=21.6

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +|=|+++|...+|||+|+|.|.+.
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~  182 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAA  182 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCC
Confidence            777999999999999999999643

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=94.93  E-value=0.049  Score=47.44  Aligned_cols=22  Identities=41%  Similarity=0.478  Sum_probs=17.2

Q ss_pred             EEEEEecccccChhHHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      ..|+++|...+|||+|+|.|.+
T Consensus       118 ~~~~~vG~pnvGKSslin~l~~  139 (172)
T cd04178         118 ITVGVVGFPNVGKSSLINSLKR  139 (172)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhC
Confidence            4577888888888888888864

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=94.84  E-value=0.075  Score=48.68  Aligned_cols=22  Identities=32%  Similarity=0.268  Sum_probs=17.7

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ++.++|+.+.|||+|+|.|+..
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~  143 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPS  143 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhh
Confidence            5567888888999999998755

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG1423|consensus

Probab=94.81  E-value=0.06  Score=52.17  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=23.8

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ++++-=|+|+|+...|||+|-|++++.
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~   95 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQ   95 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCC
Confidence            567777899999999999999999865

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=94.79  E-value=0.11  Score=42.25  Aligned_cols=21  Identities=24%  Similarity=0.156  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|+.++|||.|+|++...
T Consensus         3 i~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999999754

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04113 Rab4 Rab4 subfamily

Probab=94.74  E-value=0.1  Score=42.74  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=18.6

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|+|+|+..
T Consensus         3 i~v~G~~~vGKTsli~~l~~~   23 (161)
T cd04113           3 FIIIGSSGTGKSCLLHRFVEN   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999999743

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=94.73  E-value=0.12  Score=45.15  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|+.++|||+|+|.|++.
T Consensus         4 I~i~G~~g~GKSSLin~L~g~   24 (197)
T cd04104           4 IAVTGESGAGKSSFINALRGV   24 (197)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            679999999999999999753

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=94.68  E-value=0.087  Score=49.17  Aligned_cols=27  Identities=7%  Similarity=0.129  Sum_probs=21.2

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ..++.|....+.|..-|++.+...+..
T Consensus        81 ~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         81 IKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            445677778889999999999887654

>cd01868 Rab11_like Rab11-like

Probab=94.67  E-value=0.11  Score=42.73  Aligned_cols=23  Identities=30%  Similarity=0.299  Sum_probs=19.6

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .=|.|+|+.++|||+|+|++...
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~   26 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRN   26 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            34779999999999999999643

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=94.64  E-value=0.025  Score=51.45  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=21.8

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +|+|+||.++|||+|||.+......
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~P   51 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFETP   51 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccCC
Confidence            6889999999999999999887543

>cd01861 Rab6 Rab6 subfamily

Probab=94.60  E-value=0.11  Score=42.28  Aligned_cols=21  Identities=14%  Similarity=0.202  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|+..+|||.|+|+|+..
T Consensus         3 i~liG~~~~GKSsli~~l~~~   23 (161)
T cd01861           3 LVFLGDQSVGKTSIITRFMYD   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678999999999999999643

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01864 Rab19 Rab19 subfamily

Probab=94.54  E-value=0.13  Score=42.59  Aligned_cols=22  Identities=14%  Similarity=0.218  Sum_probs=18.8

Q ss_pred             EEEEEecccccChhHHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .-|.|+|+.++|||+|++++..
T Consensus         4 ~kv~vvG~~~~GKTsli~~l~~   25 (165)
T cd01864           4 FKIILIGDSNVGKTCVVQRFKS   25 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            4577889999999999999854

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=94.45  E-value=0.14  Score=41.69  Aligned_cols=20  Identities=30%  Similarity=0.398  Sum_probs=18.1

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.++|..++|||.|+|++..
T Consensus         3 v~~vG~~~~GKTsl~~~~~~   22 (162)
T cd04106           3 VIVVGNGNVGKSSMIQRFVK   22 (162)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999964

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>TIGR00235 udk uridine kinase

Probab=94.41  E-value=0.043  Score=48.30  Aligned_cols=28  Identities=11%  Similarity=0.290  Sum_probs=24.3

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ++-.||+|+|+.++|||+|++.|.+.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3457899999999999999999998754

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK15494 era GTPase Era; Provisional

Probab=94.37  E-value=0.09  Score=50.38  Aligned_cols=27  Identities=30%  Similarity=0.418  Sum_probs=22.7

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++..-|+|+|...+|||+|+|+|+..
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~   75 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGE   75 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence            345667899999999999999999743

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=94.36  E-value=0.031  Score=48.56  Aligned_cols=23  Identities=17%  Similarity=0.452  Sum_probs=21.5

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ||+|+|+.++|||+|++.|.+.+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998876

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd01866 Rab2 Rab2 subfamily

Probab=94.30  E-value=0.18  Score=42.09  Aligned_cols=25  Identities=24%  Similarity=0.131  Sum_probs=21.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+.=|.|+|+.++|||.|+|++++.
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~   27 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDK   27 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3566899999999999999999643

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PRK00098 GTPase RsgA; Reviewed

Probab=94.20  E-value=0.079  Score=49.83  Aligned_cols=22  Identities=41%  Similarity=0.369  Sum_probs=16.2

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ++.++|+.+.|||+|+|.|++.
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~  187 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPD  187 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            4557788888888888888643

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=94.20  E-value=0.19  Score=42.01  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=20.0

Q ss_pred             EEEEEEecccccChhHHHHHHHH
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +.-|.++|+..+|||.|+|+++.
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~   24 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            35688999999999999999964

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PRK05480 uridine/cytidine kinase; Provisional

Probab=94.10  E-value=0.045  Score=48.03  Aligned_cols=26  Identities=15%  Similarity=0.369  Sum_probs=23.5

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +--+|+|+|+.+||||+|++.|.+.+
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999999886

>cd04171 SelB SelB subfamily

Probab=94.09  E-value=0.036  Score=45.03  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=19.6

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +|+|+|...+|||+|+|+|.+
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~   22 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTG   22 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhC
Confidence            789999999999999999974

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=94.04  E-value=0.26  Score=45.71  Aligned_cols=26  Identities=8%  Similarity=0.101  Sum_probs=20.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .++.|....+.|-.-|++.+...+..
T Consensus        79 ~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        79 KALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            45666677888999999999988643

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=94.00  E-value=0.038  Score=49.83  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=22.1

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ||+|+|+.++|||+|++.|...+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHh
Confidence            689999999999999999998874

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=93.95  E-value=0.05  Score=42.70  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             EEEecccccChhHHHHHHHHhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |.|.|+.+||||+|++.|...+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999884

...

>cd01894 EngA1 EngA1 subfamily

Probab=93.94  E-value=0.12  Score=41.49  Aligned_cols=20  Identities=30%  Similarity=0.331  Sum_probs=17.0

Q ss_pred             EEecccccChhHHHHHHHHh
Q psy5031          60 SVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        60 sI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++|..++|||.|+|+|++.
T Consensus         1 ~l~G~~~~GKssl~~~l~~~   20 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGR   20 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCC
Confidence            47899999999999999643

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01865 Rab3 Rab3 subfamily

Probab=93.89  E-value=0.17  Score=41.99  Aligned_cols=22  Identities=18%  Similarity=0.069  Sum_probs=19.0

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      =|.|+|+.++|||.|+|++...
T Consensus         3 ki~i~G~~~~GKSsli~~l~~~   24 (165)
T cd01865           3 KLLIIGNSSVGKTSFLFRYADD   24 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PRK08233 hypothetical protein; Provisional

Probab=93.86  E-value=0.052  Score=45.75  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=23.3

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .-||+|.|+.+||||+|+++|...+.
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            36899999999999999999998763

>PTZ00301 uridine kinase; Provisional

Probab=93.85  E-value=0.052  Score=48.95  Aligned_cols=27  Identities=26%  Similarity=0.318  Sum_probs=23.3

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      |.-||+|+|+.+||||+|.+.|.+.+.
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~   28 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELM   28 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHH
Confidence            346899999999999999999887653

>cd04124 RabL2 RabL2 subfamily

Probab=93.84  E-value=0.21  Score=41.42  Aligned_cols=21  Identities=29%  Similarity=0.297  Sum_probs=18.3

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..++|||+|+++++..
T Consensus         3 i~vvG~~~vGKTsli~~~~~~   23 (161)
T cd04124           3 IILLGDSAVGKSKLVERFLMD   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999999753

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04122 Rab14 Rab14 subfamily

Probab=93.83  E-value=0.18  Score=41.85  Aligned_cols=21  Identities=29%  Similarity=0.328  Sum_probs=18.2

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|+|++...
T Consensus         5 i~iiG~~~vGKTsli~~~~~~   25 (166)
T cd04122           5 YIIIGDMGVGKSCLLHQFTEK   25 (166)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            678899999999999999643

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04163 Era Era subfamily

Probab=93.77  E-value=0.046  Score=43.74  Aligned_cols=23  Identities=35%  Similarity=0.379  Sum_probs=20.3

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -+|+++|+.++|||+|+|+|++.
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK06696 uridine kinase; Validated

Probab=93.75  E-value=0.1  Score=46.63  Aligned_cols=28  Identities=21%  Similarity=0.242  Sum_probs=25.0

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ...+|+|.|+.+||||+|++.|.+.+..
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~   48 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIKK   48 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999999998753

>cd04116 Rab9 Rab9 subfamily

Probab=93.73  E-value=0.22  Score=41.27  Aligned_cols=22  Identities=27%  Similarity=0.264  Sum_probs=19.0

Q ss_pred             EEEEEecccccChhHHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .-|.|+|+.++|||.|+|++++
T Consensus         6 ~ki~vvG~~~~GKTsli~~~~~   27 (170)
T cd04116           6 LKVILLGDGGVGKSSLMNRYVT   27 (170)
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4577889999999999999964

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=93.73  E-value=0.22  Score=41.07  Aligned_cols=23  Identities=26%  Similarity=0.141  Sum_probs=19.5

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .=|.|+|+.++|||.|+|++...
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~   25 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADD   25 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            44788999999999999999643

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04127 Rab27A Rab27a subfamily

Probab=93.73  E-value=0.32  Score=40.60  Aligned_cols=24  Identities=17%  Similarity=0.099  Sum_probs=20.1

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +.-|.++|+.++|||.|+|++...
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~   27 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDN   27 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            445679999999999999999654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=93.70  E-value=0.066  Score=46.08  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=24.4

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |++-.|+|+|...+|||+|++.|+.+.
T Consensus         1 k~~~~I~i~G~~~sGKTTL~~~L~~~~   27 (188)
T PF00009_consen    1 KNIRNIAIIGHVDSGKTTLLGALLGKA   27 (188)
T ss_dssp             STEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCcEeechhhhhhc
Confidence            468899999999999999999999774

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.69  E-value=0.046  Score=50.97  Aligned_cols=26  Identities=27%  Similarity=0.258  Sum_probs=22.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      -+|||+||.++|||+|||.+.+-...
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            37899999999999999999876544

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=93.68  E-value=0.098  Score=46.91  Aligned_cols=30  Identities=30%  Similarity=0.416  Sum_probs=26.6

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +.+..+|+|+|+.++|||+|++.|.+.+..
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~   59 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ   59 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            456799999999999999999999988754

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=93.68  E-value=0.14  Score=44.05  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +.-|+++|...+|||+|+|+|+..
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~   25 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQ   25 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHH
Confidence            345888999999999999999863

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=93.66  E-value=0.061  Score=42.04  Aligned_cols=21  Identities=29%  Similarity=0.230  Sum_probs=19.1

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||+|+++|++.
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~   22 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGG   22 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            678999999999999999865

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04159 Arl10_like Arl10-like subfamily

Probab=93.65  E-value=0.045  Score=43.64  Aligned_cols=21  Identities=19%  Similarity=0.374  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|+.++|||.|+|+|.+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            689999999999999999654

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=93.61  E-value=0.23  Score=41.26  Aligned_cols=23  Identities=26%  Similarity=0.138  Sum_probs=19.7

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .=|.++|+.++|||.|+|++...
T Consensus         4 ~ki~vvG~~~~GKSsl~~~~~~~   26 (167)
T cd01867           4 FKLLLIGDSGVGKSCLLLRFSED   26 (167)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            45789999999999999999743

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=93.56  E-value=0.064  Score=39.56  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+|+..+|||++++.|.+.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998875

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=93.56  E-value=0.26  Score=41.40  Aligned_cols=21  Identities=19%  Similarity=0.176  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|+|++++.
T Consensus         3 i~vvG~~~vGKTsli~~~~~~   23 (166)
T cd00877           3 LVLVGDGGTGKTTFVKRHLTG   23 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999999754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>COG1084 Predicted GTPase [General function prediction only]

Probab=93.43  E-value=0.18  Score=48.93  Aligned_cols=42  Identities=24%  Similarity=0.196  Sum_probs=27.3

Q ss_pred             EEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHH
Q psy5031          35 FILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        35 l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll   77 (281)
                      |..-.+|-+.+..-+.+ |--.-=|-|+|+...|||+|++.+-
T Consensus       148 L~fL~~~r~~l~~LP~I-dp~~pTivVaG~PNVGKSSlv~~lT  189 (346)
T COG1084         148 LEFLRKARDHLKKLPAI-DPDLPTIVVAGYPNVGKSSLVRKLT  189 (346)
T ss_pred             HHHHHHHHHHHhcCCCC-CCCCCeEEEecCCCCcHHHHHHHHh
Confidence            33444555555444443 3234456689999999999999994

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=93.39  E-value=0.54  Score=38.78  Aligned_cols=20  Identities=40%  Similarity=0.419  Sum_probs=18.0

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.|+|+..+|||.|+++++.
T Consensus         2 i~vvG~~~~GKtsli~~~~~   21 (165)
T cd04146           2 IAVLGASGVGKSALVVRFLT   21 (165)
T ss_pred             EEEECCCCCcHHHHHHHHHh
Confidence            67899999999999999864

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=93.37  E-value=0.075  Score=44.80  Aligned_cols=25  Identities=32%  Similarity=0.422  Sum_probs=23.3

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ||+|+|+..||||+|+..|++++..
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~   26 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKR   26 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhH
Confidence            7999999999999999999999864

>PRK07667 uridine kinase; Provisional

Probab=93.34  E-value=0.15  Score=44.76  Aligned_cols=30  Identities=23%  Similarity=0.399  Sum_probs=25.7

Q ss_pred             CCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+++ .||+|.|+.+||||+|.+.|...+..
T Consensus        14 ~~~~-~iIgI~G~~gsGKStla~~L~~~l~~   43 (193)
T PRK07667         14 KENR-FILGIDGLSRSGKTTFVANLKENMKQ   43 (193)
T ss_pred             CCCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3445 89999999999999999999988753

>cd04112 Rab26 Rab26 subfamily

Probab=93.30  E-value=0.22  Score=42.81  Aligned_cols=21  Identities=29%  Similarity=0.183  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|+|++...
T Consensus         3 i~vvG~~~vGKTSli~~~~~~   23 (191)
T cd04112           3 VMLLGDSGVGKTCLLVRFKDG   23 (191)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            678899999999999999643

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=93.30  E-value=0.12  Score=47.81  Aligned_cols=42  Identities=24%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhc
Q psy5031          40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFT   83 (281)
Q Consensus        40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~   83 (281)
                      ++|..++.+.  ...+-.+|++.|+-++|||++||.+.+++...
T Consensus         6 ~~la~~I~~~--~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~   47 (325)
T PF07693_consen    6 KALAEIIKNP--DSDDPFVIGLYGEWGSGKSSFLNMLKEELKED   47 (325)
T ss_pred             HHHHHHHhcc--CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            4555566532  22567889999999999999999999887653

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=93.29  E-value=0.055  Score=43.68  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            67889999999999999997654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd01854 YjeQ_engC YjeQ/EngC

Probab=93.27  E-value=0.26  Score=46.09  Aligned_cols=23  Identities=30%  Similarity=0.290  Sum_probs=17.6

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++++|+.+.|||+|+|.|+..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~  184 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPD  184 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhch
Confidence            35677888888888888888654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01862 Rab7 Rab7 subfamily

Probab=93.25  E-value=0.059  Score=44.34  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.6

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|+|+|+.++|||+|+|++.+.
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK00093 GTP-binding protein Der; Reviewed

Probab=93.21  E-value=0.34  Score=47.22  Aligned_cols=19  Identities=32%  Similarity=0.279  Sum_probs=13.0

Q ss_pred             cchhhccCchhHHHHHHhh
Q psy5031         133 KVSAFRKGKSFLLDFLLRY  151 (281)
Q Consensus       133 ~~~~~r~gkS~Lln~l~~~  151 (281)
                      .+|.-..|||.|+|.|++.
T Consensus       178 ivG~~n~GKStlin~ll~~  196 (435)
T PRK00093        178 IIGRPNVGKSSLINALLGE  196 (435)
T ss_pred             EECCCCCCHHHHHHHHhCC
Confidence            4566677777777777653

>cd04109 Rab28 Rab28 subfamily

Probab=93.16  E-value=0.3  Score=42.94  Aligned_cols=20  Identities=25%  Similarity=0.237  Sum_probs=18.1

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.|+|+.++|||+|+|+|..
T Consensus         3 i~ivG~~~vGKSsLi~~l~~   22 (215)
T cd04109           3 IVVLGDGAVGKTSLCRRFAK   22 (215)
T ss_pred             EEEECcCCCCHHHHHHHHhc
Confidence            67899999999999999964

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PF13173 AAA_14: AAA domain

Probab=93.07  E-value=0.092  Score=42.73  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.4

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ++.|.|+-|+|||+|+.++++++.
T Consensus         4 ~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            578899999999999999998754

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=93.04  E-value=0.34  Score=48.53  Aligned_cols=28  Identities=21%  Similarity=0.184  Sum_probs=24.5

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ++-.||.++|++++|||+++..|..++.
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~  125 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQ  125 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3457999999999999999999998764

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=93.03  E-value=0.11  Score=40.28  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ..+-|.|+.++|||+|++.+.+.+
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            456689999999999999999875

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd01878 HflX HflX subfamily

Probab=93.02  E-value=0.062  Score=46.41  Aligned_cols=27  Identities=26%  Similarity=0.290  Sum_probs=23.8

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..++..|+|+|+.++|||+|+|++.+.
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~   64 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGA   64 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcc
Confidence            356789999999999999999999764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PLN03118 Rab family protein; Provisional

Probab=93.01  E-value=0.33  Score=42.47  Aligned_cols=22  Identities=27%  Similarity=0.233  Sum_probs=18.7

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|+..+|||.|+|+|+..
T Consensus        16 kv~ivG~~~vGKTsli~~l~~~   37 (211)
T PLN03118         16 KILLIGDSGVGKSSLLVSFISS   37 (211)
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            3668899999999999999743

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=93.01  E-value=0.078  Score=41.59  Aligned_cols=22  Identities=36%  Similarity=0.412  Sum_probs=19.1

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|+++|..++|||+|+|+++..
T Consensus         3 ki~~~G~~~~GKstl~~~l~~~   24 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLGN   24 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3788999999999999999754

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=93.00  E-value=0.44  Score=46.21  Aligned_cols=19  Identities=32%  Similarity=0.272  Sum_probs=14.6

Q ss_pred             cchhhccCchhHHHHHHhh
Q psy5031         133 KVSAFRKGKSFLLDFLLRY  151 (281)
Q Consensus       133 ~~~~~r~gkS~Lln~l~~~  151 (281)
                      .+|.-..|||.|+|.|++.
T Consensus       177 ivG~~~~GKSsLin~l~~~  195 (429)
T TIGR03594       177 IIGRPNVGKSTLVNALLGE  195 (429)
T ss_pred             EECCCCCCHHHHHHHHHCC
Confidence            4577788888888888763

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=92.99  E-value=0.23  Score=46.70  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=18.0

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |=|+|+.++|||+|+|-|++.
T Consensus         7 ImVvG~sG~GKTTFIntL~~~   27 (281)
T PF00735_consen    7 IMVVGESGLGKTTFINTLFNS   27 (281)
T ss_dssp             EEEEECTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            447899999999999999764

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd04118 Rab24 Rab24 subfamily

Probab=92.89  E-value=0.33  Score=41.35  Aligned_cols=21  Identities=24%  Similarity=0.275  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|+|+++..
T Consensus         3 i~vvG~~~vGKSsLi~~~~~~   23 (193)
T cd04118           3 VVMLGKESVGKTSLVERYVHH   23 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999999753

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd00154 Rab Rab family

Probab=92.79  E-value=0.09  Score=41.77  Aligned_cols=21  Identities=24%  Similarity=0.203  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|+.++|||+|+|++...
T Consensus         3 i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999999754

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=92.77  E-value=0.076  Score=49.76  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=23.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+++|+||.++|||+||..|++.+..
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~g~l~p   54 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAGLLKP   54 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCC
Confidence            47899999999999999999998754

>PLN02318 phosphoribulokinase/uridine kinase

Probab=92.77  E-value=0.13  Score=53.69  Aligned_cols=45  Identities=24%  Similarity=0.442  Sum_probs=36.1

Q ss_pred             CceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          32 KHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        32 ~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |..|-+--.|++.+..    .+....||+|+|+.++|||+|++.|.+.+
T Consensus        45 d~g~~~~ira~qlL~~----~~~~riIIGIaGpSGSGKTTLAk~LaglL   89 (656)
T PLN02318         45 EKGFFVVIRACQLLAQ----KNDGIILVGVAGPSGAGKTVFTEKVLNFM   89 (656)
T ss_pred             ccchhhhhHHHHHHHh----cCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence            4567777788885543    34467899999999999999999998765

>cd04110 Rab35 Rab35 subfamily

Probab=92.66  E-value=0.3  Score=42.36  Aligned_cols=24  Identities=25%  Similarity=0.170  Sum_probs=20.6

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +.=|.|+|+.++|||.|++++++.
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~   29 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADN   29 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            456889999999999999999754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=92.64  E-value=0.14  Score=42.90  Aligned_cols=31  Identities=23%  Similarity=0.196  Sum_probs=20.9

Q ss_pred             CCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ....-.++-|.|+.++|||+|++.++.++..
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~   50 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAE   50 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3555688999999999999999999988654

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=92.64  E-value=0.077  Score=42.78  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..++|||.|+|+|.+.
T Consensus         3 v~liG~~~vGKSsL~~~l~~~   23 (142)
T TIGR02528         3 IMFIGSVGCGKTTLTQALQGE   23 (142)
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            679999999999999999643

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=92.63  E-value=0.078  Score=44.60  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=17.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|.|...||||+|++.|..+
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            789999999999999999876

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.59  E-value=0.088  Score=48.71  Aligned_cols=22  Identities=41%  Similarity=0.397  Sum_probs=19.1

Q ss_pred             EEEEEecccccChhHHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      -||+|+||.+||||+||.-|++
T Consensus        29 evv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            4788999999999999988753

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=92.57  E-value=0.087  Score=46.95  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=21.3

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+|+.++|||+||+.|.+.+.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            689999999999999999987643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1161 Predicted GTPases [General function prediction only]

Probab=92.56  E-value=0.66  Score=44.35  Aligned_cols=21  Identities=43%  Similarity=0.430  Sum_probs=17.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|...+|||+|+|.|+..
T Consensus       135 v~vvG~PNVGKSslIN~L~~k  155 (322)
T COG1161         135 VGVVGYPNVGKSTLINRLLGK  155 (322)
T ss_pred             EEEEcCCCCcHHHHHHHHhcc
Confidence            888888899999999988643

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=92.49  E-value=0.069  Score=45.87  Aligned_cols=27  Identities=19%  Similarity=0.210  Sum_probs=22.6

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +-.++.|+||-|+|||+|++.+++.+.
T Consensus        19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~   45 (234)
T PF01637_consen   19 PSQHILLYGPRGSGKTSLLKEFINELK   45 (234)
T ss_dssp             -SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred             cCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence            455677899999999999999998863

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>cd00876 Ras Ras family

Probab=92.48  E-value=0.1  Score=42.11  Aligned_cols=21  Identities=33%  Similarity=0.208  Sum_probs=18.9

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|+|+++..
T Consensus         2 i~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999754

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=92.45  E-value=0.11  Score=39.65  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=21.7

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+.|+||.+||||+|+..++..+..
T Consensus         4 ~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        4 VILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             EEEEECCCCCcHHHHHHHHHhccCC
Confidence            5789999999999999999887543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=92.44  E-value=0.44  Score=41.27  Aligned_cols=21  Identities=24%  Similarity=0.308  Sum_probs=18.4

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||+|+|+++..
T Consensus         3 ivivG~~~vGKTsli~~l~~~   23 (201)
T cd04107           3 VLVIGDLGVGKTSIIKRYVHG   23 (201)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678999999999999999743

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=92.41  E-value=0.11  Score=46.29  Aligned_cols=31  Identities=29%  Similarity=0.323  Sum_probs=26.0

Q ss_pred             CCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +.--+-+|+|.|+-.||||+|.|+|.+.++.
T Consensus         4 rp~F~K~VailG~ESsGKStLv~kLA~~fnt   34 (187)
T COG3172           4 RPFFVKTVAILGGESSGKSTLVNKLANIFNT   34 (187)
T ss_pred             chhhheeeeeecCcccChHHHHHHHHHHhCC
Confidence            3445778999999999999999999987543

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=92.34  E-value=0.78  Score=42.70  Aligned_cols=21  Identities=19%  Similarity=0.392  Sum_probs=19.1

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|...+|||+|.|+|+..
T Consensus         2 v~ivGh~~~GKTtL~~~Ll~~   22 (270)
T cd01886           2 IGIIAHIDAGKTTTTERILYY   22 (270)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            789999999999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=92.33  E-value=0.14  Score=45.19  Aligned_cols=28  Identities=21%  Similarity=0.363  Sum_probs=25.5

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+-+-+|+++|+.++|||+|++++++.+
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~   46 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL   46 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5569999999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=92.30  E-value=0.13  Score=43.84  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+|+.++|||+|++.|...+
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARL   25 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            68899999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=92.29  E-value=0.1  Score=45.87  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+..
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=92.28  E-value=0.1  Score=45.85  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368899999999999999998764

>cd01131 PilT Pilus retraction ATPase PilT

Probab=92.26  E-value=0.13  Score=45.39  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=22.0

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|.|+||.+||||++++.|++++.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            688999999999999999998864

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=92.26  E-value=0.11  Score=45.42  Aligned_cols=21  Identities=43%  Similarity=0.447  Sum_probs=18.7

Q ss_pred             EEEEEecccccChhHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll   77 (281)
                      .+++|+||.++|||+|||.++
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            468899999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=92.23  E-value=0.12  Score=41.82  Aligned_cols=21  Identities=38%  Similarity=0.292  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||+|+|+++..
T Consensus         4 i~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           4 LVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999999854

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=92.21  E-value=0.13  Score=48.91  Aligned_cols=32  Identities=19%  Similarity=0.203  Sum_probs=28.2

Q ss_pred             CCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          51 VKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        51 ~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +..+.+.+|.|+|+.++|||+||+.+++.+..
T Consensus        99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~  130 (290)
T PRK10463         99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKD  130 (290)
T ss_pred             HHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            34678999999999999999999999998643

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=92.20  E-value=0.068  Score=48.25  Aligned_cols=52  Identities=44%  Similarity=0.630  Sum_probs=46.8

Q ss_pred             CCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCcccCCCCcccccceeeeeceE
Q psy5031          52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVY  124 (281)
Q Consensus        52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~  124 (281)
                      .++||+||||+|++|||||||||+|++.                     ..+|+++.+.++||+|||||..|+
T Consensus         3 ~~~~v~vvsv~G~~~sGKS~llN~l~~~---------------------~~~f~~~~~~~~~T~gi~~~~~~~   54 (224)
T cd01851           3 AGFPVAVVSVFGPQSSGKSFLLNHLFGT---------------------LSGFDVMDTSQQTTKGIWMWSVPF   54 (224)
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhCC---------------------CCCeEecCCCCCCccceEEEeccc
Confidence            4789999999999999999999999754                     257999999999999999998775

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=92.20  E-value=0.13  Score=41.50  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ||-++|+.+||||+|+..|.+.+.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC
Confidence            678999999999999999987643

...

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=92.18  E-value=0.46  Score=41.58  Aligned_cols=24  Identities=17%  Similarity=0.110  Sum_probs=19.8

Q ss_pred             eEEEEEEecccccChhHHHHHHHH
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +..-|+++|+.++|||+|+++++.
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~~~   31 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRHLT   31 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHh
Confidence            445689999999999999987653

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=92.17  E-value=0.075  Score=40.83  Aligned_cols=19  Identities=42%  Similarity=0.401  Sum_probs=17.2

Q ss_pred             EecccccChhHHHHHHHHh
Q psy5031          61 VAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        61 I~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+.++|||+|+|++.+.
T Consensus         1 iiG~~~~GKStl~~~l~~~   19 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGG   19 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhC
Confidence            5899999999999999765

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=92.17  E-value=0.11  Score=44.87  Aligned_cols=23  Identities=39%  Similarity=0.405  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|++..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998653

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd01860 Rab5_related Rab5-related subfamily

Probab=92.16  E-value=0.11  Score=42.39  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=19.4

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|+.++|||.|+|++++.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (163)
T cd01860           3 KLVLLGDSSVGKSSLVLRFVKN   24 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3788999999999999999764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=92.15  E-value=0.11  Score=45.36  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999998764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=92.14  E-value=0.13  Score=43.59  Aligned_cols=25  Identities=12%  Similarity=0.193  Sum_probs=22.1

Q ss_pred             EEEEEEecccccChhHHHHHHHHhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +-+|.|+|+.+||||+|++.|...+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4588999999999999999998764

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=92.10  E-value=0.13  Score=45.61  Aligned_cols=24  Identities=33%  Similarity=0.371  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|.+.+
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          27 EITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            378899999999999999998875

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=92.09  E-value=0.13  Score=45.35  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=23.9

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ..|++|+|+.+||||+|+..|+..+..
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~~   32 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALCA   32 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHhh
Confidence            348999999999999999999988754

>PRK00300 gmk guanylate kinase; Provisional

Probab=92.09  E-value=0.13  Score=44.62  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=21.9

Q ss_pred             EEEEEEecccccChhHHHHHHHHhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      =.+|+|+|+.++|||+|++.|++.+
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3578999999999999999998864

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=92.09  E-value=0.11  Score=45.76  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          27 EIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999997654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=92.07  E-value=0.12  Score=42.28  Aligned_cols=21  Identities=29%  Similarity=0.162  Sum_probs=18.9

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|+.++|||+|+|++.+.
T Consensus         3 i~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        3 LVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            778999999999999999754

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04111 Rab39 Rab39 subfamily

Probab=92.07  E-value=0.47  Score=41.94  Aligned_cols=22  Identities=32%  Similarity=0.211  Sum_probs=18.9

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|+.++|||.|+|+|+..
T Consensus         4 KIvvvG~~~vGKTsLi~~l~~~   25 (211)
T cd04111           4 RLIVIGDSTVGKSSLLKRFTEG   25 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3778999999999999999743

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=92.01  E-value=0.11  Score=43.08  Aligned_cols=24  Identities=21%  Similarity=0.164  Sum_probs=20.4

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -.-|+|+|+.++|||+|+|+|.+.
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            345889999999999999999654

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=92.01  E-value=0.12  Score=45.19  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78899999999999999998764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=92.01  E-value=0.12  Score=45.28  Aligned_cols=24  Identities=17%  Similarity=0.338  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          27 EIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368899999999999999998753

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00071 tufA elongation factor Tu

Probab=92.00  E-value=0.78  Score=45.02  Aligned_cols=27  Identities=22%  Similarity=0.222  Sum_probs=23.9

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+|.--|+|+|...+|||+|+|+|+..
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~   35 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMT   35 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            466777999999999999999999865

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=91.99  E-value=0.12  Score=44.87  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=22.1

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ||+|+|+.+||||+|++.|...+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~   24 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLR   24 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998864

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK05439 pantothenate kinase; Provisional

Probab=91.98  E-value=0.23  Score=47.60  Aligned_cols=40  Identities=28%  Similarity=0.394  Sum_probs=29.4

Q ss_pred             HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ++++.++...  ..+.-.||+|+|+.++|||+|++.|...+.
T Consensus        72 ~~~~~fl~~~--~~~~~~iIgIaG~~gsGKSTla~~L~~~l~  111 (311)
T PRK05439         72 AALEQFLGKN--GQKVPFIIGIAGSVAVGKSTTARLLQALLS  111 (311)
T ss_pred             HHHHHHhccc--CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3455555422  234568999999999999999999987653

>cd00881 GTP_translation_factor GTP translation factor family

Probab=91.97  E-value=0.13  Score=42.81  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=19.3

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|...+|||+|+|.|+..
T Consensus         2 v~v~G~~~~GKStlln~l~~~   22 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYV   22 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHh
Confidence            688999999999999999876

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=91.96  E-value=0.12  Score=45.49  Aligned_cols=24  Identities=33%  Similarity=0.400  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        32 ~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        32 EIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=91.94  E-value=0.25  Score=46.92  Aligned_cols=28  Identities=25%  Similarity=0.348  Sum_probs=23.2

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ..| -||+|+|+.++|||+|++.|...+.
T Consensus        60 ~~p-~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        60 KIP-YIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             CCC-EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            344 6999999999999999988866553

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=91.92  E-value=0.12  Score=45.23  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|++.+
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78899999999999999998764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=91.91  E-value=0.12  Score=46.80  Aligned_cols=24  Identities=33%  Similarity=0.285  Sum_probs=21.6

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|++.+
T Consensus        31 e~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         31 SVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            578999999999999999998764

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=91.90  E-value=0.12  Score=43.10  Aligned_cols=23  Identities=35%  Similarity=0.444  Sum_probs=20.4

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+||.++|||+|++.|.+.+
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcC
Confidence            47889999999999999998763

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=91.88  E-value=0.12  Score=46.13  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        29 EFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            378999999999999999998754

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd04167 Snu114p Snu114p subfamily

Probab=91.85  E-value=0.46  Score=41.82  Aligned_cols=21  Identities=43%  Similarity=0.751  Sum_probs=18.9

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|...+|||+|+++|+..
T Consensus         3 v~iiG~~~~GKTtL~~~l~~~   23 (213)
T cd04167           3 VAIAGHLHHGKTSLLDMLIEQ   23 (213)
T ss_pred             EEEEcCCCCCHHHHHHHHHHh
Confidence            678899999999999999875

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=91.85  E-value=0.11  Score=45.47  Aligned_cols=23  Identities=22%  Similarity=0.327  Sum_probs=21.1

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            88999999999999999998754

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=91.80  E-value=0.52  Score=45.67  Aligned_cols=22  Identities=36%  Similarity=0.400  Sum_probs=19.4

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .|+|+|...+|||+|+|+|++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~   22 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGK   22 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04123 Rab21 Rab21 subfamily

Probab=91.79  E-value=0.14  Score=41.38  Aligned_cols=21  Identities=29%  Similarity=0.245  Sum_probs=18.9

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|+.++|||+|+|+|++.
T Consensus         3 i~i~G~~~~GKStli~~l~~~   23 (162)
T cd04123           3 VVLLGEGRVGKTSLVLRYVEN   23 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            688999999999999999754

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=91.79  E-value=0.14  Score=43.86  Aligned_cols=25  Identities=24%  Similarity=0.475  Sum_probs=22.8

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ||+|+|+.++|||+|+++|+..+..
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~   25 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKA   25 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999998754

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=91.79  E-value=0.13  Score=45.43  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999998754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=91.78  E-value=0.16  Score=42.33  Aligned_cols=23  Identities=17%  Similarity=0.424  Sum_probs=21.2

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ||.|.|+++||||++++.|.+.+
T Consensus         2 iI~i~G~~GSGKstia~~la~~l   24 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            79999999999999999998764

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=91.77  E-value=0.13  Score=45.20  Aligned_cols=24  Identities=33%  Similarity=0.358  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|++.+
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCc
Confidence            378899999999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=91.77  E-value=0.13  Score=44.93  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=91.76  E-value=0.2  Score=48.31  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=21.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+-|.|+.+||||||+|.|..++..
T Consensus        24 ~~fv~G~~GtGKs~l~~~i~~~~~~   48 (364)
T PF05970_consen   24 NFFVTGPAGTGKSFLIKAIIDYLRS   48 (364)
T ss_pred             EEEEEcCCCCChhHHHHHHHHHhcc
Confidence            4567899999999999999988654

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=91.76  E-value=0.14  Score=41.90  Aligned_cols=22  Identities=41%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +|+|+|..++|||.|+|+|...
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~   23 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKT   23 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhc
Confidence            5899999999999999999754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=91.75  E-value=0.13  Score=42.21  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||+|+|+|.+.
T Consensus         2 i~~vG~~~~GKstLi~~l~~~   22 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTL   22 (167)
T ss_pred             EEEEecCCCCHHHHHHHHhhh
Confidence            678999999999999999764

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=91.74  E-value=0.16  Score=37.77  Aligned_cols=25  Identities=32%  Similarity=0.324  Sum_probs=21.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +..|.|+.++|||+||+.+.--|++
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~~   49 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLYG   49 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcC
Confidence            6889999999999999999755544

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=91.74  E-value=0.14  Score=44.82  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|++..
T Consensus        35 ~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          35 EKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            468899999999999999998764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=91.73  E-value=0.14  Score=45.07  Aligned_cols=26  Identities=31%  Similarity=0.309  Sum_probs=23.2

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+ -+++|+|+.++|||+|++.|++.+
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence            36 899999999999999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01884 EF_Tu EF-Tu subfamily

Probab=91.72  E-value=0.75  Score=40.64  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.4

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|+|+|...+|||+|+++|+..
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~   25 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKV   25 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999999865

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01863 Rab18 Rab18 subfamily

Probab=91.71  E-value=0.13  Score=41.96  Aligned_cols=21  Identities=29%  Similarity=0.167  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|+|+|...
T Consensus         3 i~v~G~~~~GKSsli~~l~~~   23 (161)
T cd01863           3 ILLIGDSGVGKSSLLLRFTDD   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999743

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=91.70  E-value=0.13  Score=45.36  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          32 ETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK09087 hypothetical protein; Validated

Probab=91.67  E-value=0.38  Score=43.56  Aligned_cols=54  Identities=17%  Similarity=0.177  Sum_probs=37.2

Q ss_pred             eeEEEEe---CCC---ceEEe---CHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031          23 AIQIVKS---EEK---HKFIL---DYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        23 pvqLV~~---~~~---~~l~l---n~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-||+-.   +.+   ..|.+   |..|+..+. +.  .+++-..+.|+|+.++|||+|++.+...
T Consensus         5 ~~Ql~l~~~~~~~~~~~~Fi~~~~N~~a~~~l~-~~--~~~~~~~l~l~G~~GsGKThLl~~~~~~   67 (226)
T PRK09087          5 PEQLPLNFSHDPAYGRDDLLVTESNRAAVSLVD-HW--PNWPSPVVVLAGPVGSGKTHLASIWREK   67 (226)
T ss_pred             CcceeeCCCCCCCCChhceeecCchHHHHHHHH-hc--ccCCCCeEEEECCCCCCHHHHHHHHHHh
Confidence            5566654   222   37777   788888543 21  2344446899999999999999988754

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=91.61  E-value=0.13  Score=45.68  Aligned_cols=23  Identities=35%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          29 FVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            78999999999999999998754

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=91.60  E-value=0.17  Score=41.28  Aligned_cols=23  Identities=26%  Similarity=0.163  Sum_probs=20.0

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .=|.++|+.++|||+|+|++++.
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~   25 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQS   25 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Confidence            45789999999999999999754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04154 Arl2 Arl2 subfamily

Probab=91.60  E-value=0.13  Score=43.13  Aligned_cols=26  Identities=23%  Similarity=0.341  Sum_probs=20.3

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..++. |.++|+.++|||.|+|+|...
T Consensus        12 ~~~~k-v~ivG~~~~GKTsL~~~l~~~   37 (173)
T cd04154          12 EREMR-ILILGLDNAGKTTILKKLLGE   37 (173)
T ss_pred             CCccE-EEEECCCCCCHHHHHHHHccC
Confidence            44443 559999999999999999643

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=91.60  E-value=0.22  Score=46.94  Aligned_cols=40  Identities=30%  Similarity=0.410  Sum_probs=29.8

Q ss_pred             HHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          39 YEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        39 ~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+.|+.+..+    ..+-.+|+|.|+.+.|||+|++.|..++..
T Consensus        16 ~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~   55 (266)
T PF03308_consen   16 RELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRE   55 (266)
T ss_dssp             HHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence            3556665542    335569999999999999999999998765

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR03263 guanyl_kin guanylate kinase

Probab=91.58  E-value=0.15  Score=43.30  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+||.++|||+|++.|.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            68899999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=91.58  E-value=0.7  Score=41.91  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=19.1

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|....|||+|++.|+..
T Consensus         3 vaiiGhvd~GKTTL~d~Ll~~   23 (222)
T cd01885           3 ICIIAHVDHGKTTLSDSLLAS   23 (222)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788899999999999999865

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=91.55  E-value=0.14  Score=45.52  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=21.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+++|+|+.++|||+||+.|.+.+.
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          32 EIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3788999999999999999987643

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=91.54  E-value=0.13  Score=45.16  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.4

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+.+
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          27 FLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            68899999999999999997654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=91.52  E-value=0.15  Score=45.89  Aligned_cols=23  Identities=35%  Similarity=0.356  Sum_probs=20.7

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++|+|+.++|||+||+.|.+.
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         33 QVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            37899999999999999999875

>COG4240 Predicted kinase [General function prediction only]

Probab=91.51  E-value=0.16  Score=47.62  Aligned_cols=29  Identities=24%  Similarity=0.386  Sum_probs=24.6

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhhhcc
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMNFTY   84 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~~~   84 (281)
                      =-||+|+||++||||||.-.|-+.|..++
T Consensus        50 Pli~gisGpQGSGKStls~~i~~~L~~kg   78 (300)
T COG4240          50 PLIVGISGPQGSGKSTLSALIVRLLAAKG   78 (300)
T ss_pred             ceEEEeecCCCCchhhHHHHHHHHHHHhc
Confidence            35899999999999999999888776653

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=91.50  E-value=0.14  Score=45.61  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         36 EMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998754

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=91.48  E-value=0.14  Score=45.23  Aligned_cols=23  Identities=30%  Similarity=0.689  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          31 TVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCc
Confidence            68999999999999999998764

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=91.46  E-value=0.14  Score=44.59  Aligned_cols=23  Identities=35%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          28 VVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78899999999999999998764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.45  E-value=0.15  Score=44.51  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=20.7

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|++..
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         28 GLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            468899999999999999998653

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=91.42  E-value=0.15  Score=44.26  Aligned_cols=24  Identities=25%  Similarity=0.283  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|++.+
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd04114 Rab30 Rab30 subfamily

Probab=91.42  E-value=0.21  Score=41.17  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=22.9

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ++..-|.++|+.++|||+|++++...
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~   30 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQG   30 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhC
Confidence            46788999999999999999999753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=91.40  E-value=0.14  Score=45.29  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|++.+
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          27 EIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999998764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=91.38  E-value=0.15  Score=45.70  Aligned_cols=24  Identities=29%  Similarity=0.224  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|++..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         29 ETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998764

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=91.38  E-value=0.15  Score=45.02  Aligned_cols=24  Identities=29%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          31 EFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.36  E-value=0.15  Score=45.84  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++|+|+.++|||+|++.|++.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         29 KITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            47899999999999999999875

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=91.36  E-value=0.14  Score=43.44  Aligned_cols=25  Identities=28%  Similarity=0.255  Sum_probs=21.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ...-|+|+|..++|||+|+|.|++.
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~   47 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNR   47 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4455889999999999999999753

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=91.36  E-value=0.14  Score=44.82  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            378899999999999999998754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=91.36  E-value=0.15  Score=44.49  Aligned_cols=24  Identities=17%  Similarity=0.310  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          27 EIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            578899999999999999998754

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=91.34  E-value=0.15  Score=45.07  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|.+.+
T Consensus        37 e~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         37 ETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            488999999999999999998764

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=91.30  E-value=0.16  Score=43.23  Aligned_cols=23  Identities=30%  Similarity=0.325  Sum_probs=20.2

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -+++|+|+.++|||+|++.|.+.
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~   49 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILSGL   49 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47889999999999999999765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=91.29  E-value=0.15  Score=44.59  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|++.+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          28 FLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=91.28  E-value=0.16  Score=44.23  Aligned_cols=25  Identities=28%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             EEEEEEecccccChhHHHHHHHHhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      =.+++|+|+.++|||+|++.|.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        26 GEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3578899999999999999998754

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=91.28  E-value=0.18  Score=40.01  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=19.8

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .++.|.|+.++|||++++++++.+.
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~~   29 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQLN   29 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHhH
Confidence            3678899999999999999998764

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=91.27  E-value=0.15  Score=45.81  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -+++|+|+.++|||+|++.|.+.
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         32 EITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            36899999999999999999764

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=91.24  E-value=0.14  Score=45.48  Aligned_cols=24  Identities=17%  Similarity=0.416  Sum_probs=21.0

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|.+.+
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          27 EIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCC
Confidence            378999999999999999998754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK03003 GTP-binding protein Der; Reviewed

Probab=91.23  E-value=1.2  Score=44.60  Aligned_cols=101  Identities=20%  Similarity=0.148  Sum_probs=0.0

Q ss_pred             EEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCcccCCCCcccccceeeeeceEEeecCCcccchhhc
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFR  138 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r  138 (281)
                      |+|+|....|||+|+|+|++.                                                           
T Consensus       214 I~iiG~~nvGKSSLin~l~~~-----------------------------------------------------------  234 (472)
T PRK03003        214 VALVGKPNVGKSSLLNKLAGE-----------------------------------------------------------  234 (472)
T ss_pred             EEEECCCCCCHHHHHHHHhCC-----------------------------------------------------------


Q ss_pred             cCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccCCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCC
Q psy5031         139 KGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFD  218 (281)
Q Consensus       139 ~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d  218 (281)
                                                      .....-...+++...-...+.+           +...+.|+||.|+..
T Consensus       235 --------------------------------~~~~~s~~~gtT~d~~~~~~~~-----------~~~~~~l~DTaG~~~  271 (472)
T PRK03003        235 --------------------------------ERSVVDDVAGTTVDPVDSLIEL-----------GGKTWRFVDTAGLRR  271 (472)
T ss_pred             --------------------------------CcccccCCCCccCCcceEEEEE-----------CCEEEEEEECCCccc


Q ss_pred             CCcCcccchhhHHHHHhh------hhhhhhccCCCCChhhhhHhHHHHH
Q psy5031         219 SESTVRDCATVFALSTML------SSIQIYNLSQNIQEDDLQHLQLFTE  261 (281)
Q Consensus       219 ~~~s~~~d~~IFaLs~LL------SS~~IYNs~~~Ide~~L~~L~l~t~  261 (281)
                      ...........-.+.+..      .-.++|.....+..+++..+..+.+
T Consensus       272 ~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~  320 (472)
T PRK03003        272 RVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE  320 (472)
T ss_pred             cccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=91.22  E-value=0.15  Score=45.41  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        13 e~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        13 EVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.22  E-value=0.16  Score=44.07  Aligned_cols=23  Identities=35%  Similarity=0.417  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|++.+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         28 ITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78899999999999999998753

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=91.20  E-value=0.18  Score=43.76  Aligned_cols=40  Identities=23%  Similarity=0.321  Sum_probs=28.4

Q ss_pred             eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ++++..+.+...  +.  +=.++.|+|+.++|||+|++.|++.+
T Consensus        10 ~~~~~~~~l~~~--v~--~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          10 FSPLQAAYLWLA--VE--ARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCHHHHHHHHHH--Hh--CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            456666544331  22  23578999999999999999998775

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=91.15  E-value=0.15  Score=45.34  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++|+|+.++|||+||+.|.+.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        27 EIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37889999999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=91.14  E-value=0.18  Score=40.77  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=21.1

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ||.|+|+++||||++...|...+
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999875

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.12  E-value=0.17  Score=45.59  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         30 QITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            378999999999999999998653

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=91.11  E-value=0.16  Score=46.36  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|++.+
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         28 ELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999998764

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=91.09  E-value=0.16  Score=42.49  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.3

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++|+|+.++|||+|++.|.+.
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~   49 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGE   49 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCC
Confidence            47889999999999999999765

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=91.08  E-value=0.19  Score=42.90  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++..
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          30 SLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            68899999999999999998763

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK12736 elongation factor Tu; Reviewed

Probab=91.07  E-value=0.65  Score=45.34  Aligned_cols=27  Identities=22%  Similarity=0.285  Sum_probs=23.9

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+|-.-|+|+|...+|||+|+++|+.+
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~   35 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKV   35 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhh
Confidence            567777999999999999999999865

>cd04169 RF3 RF3 subfamily

Probab=91.07  E-value=0.51  Score=43.84  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.0

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      --|+|+|...+|||+|+|+|+..
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~   25 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLF   25 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            35889999999999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.04  E-value=0.18  Score=45.43  Aligned_cols=23  Identities=35%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -+++|+|+.++|||+|++.|.+.
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         30 SVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhh
Confidence            36899999999999999999763

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=91.02  E-value=0.17  Score=44.45  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=20.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|.+.+
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          32 EVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            367889999999999999998753

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=90.99  E-value=0.68  Score=39.13  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.4

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.++|...+|||.|+|++++.
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~   23 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKD   23 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4779999999999999999754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=90.99  E-value=0.17  Score=44.41  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+..
T Consensus        32 ~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          32 KVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCc
Confidence            78899999999999999998653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=90.96  E-value=0.17  Score=45.08  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        30 e~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          30 KTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccC
Confidence            578899999999999999998764

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=90.95  E-value=0.18  Score=44.15  Aligned_cols=23  Identities=22%  Similarity=0.221  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          28 FVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=90.93  E-value=0.18  Score=44.31  Aligned_cols=24  Identities=38%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+..
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          31 EKVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            378899999999999999998764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=90.93  E-value=1  Score=40.93  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=19.2

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|...+|||+|+|+|+..
T Consensus         2 i~i~G~~~~GKTtL~~~ll~~   22 (237)
T cd04168           2 IGILAHVDAGKTTLTESLLYT   22 (237)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            789999999999999999865

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.90  E-value=0.18  Score=45.37  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         30 TITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            478999999999999999998764

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=90.89  E-value=0.18  Score=44.74  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          29 ETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            378999999999999999998664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=90.88  E-value=0.19  Score=40.48  Aligned_cols=23  Identities=26%  Similarity=0.215  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ++.|+|+.++|||+|+..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            46799999999999999998875

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=90.87  E-value=0.18  Score=44.77  Aligned_cols=24  Identities=33%  Similarity=0.575  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+..
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          28 KKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            478999999999999999998754

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.86  E-value=0.19  Score=45.24  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|++..
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         31 KITALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc
Confidence            368899999999999999998764

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=90.86  E-value=0.18  Score=43.03  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++|+|+.++|||+|++.|.+.
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~   49 (173)
T cd03230          28 IYGLLGPNGAGKTTLIKIILGL   49 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999765

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=90.84  E-value=0.18  Score=45.18  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          29 ELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03110 Rab GTPase; Provisional

Probab=90.79  E-value=0.74  Score=40.75  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=21.1

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ...-|.|+|+..+|||+|+++|.+.
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~   35 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRN   35 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Confidence            4556889999999999999999653

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.78  E-value=0.2  Score=45.79  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=20.2

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++|+|+.++|||+||+.|.+.
T Consensus        49 ~~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         49 VTALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7899999999999999999874

>PLN02796 D-glycerate 3-kinase

Probab=90.77  E-value=0.2  Score=48.80  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=23.9

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +--+|+|+|+.++|||+|++.|...+.
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL~  125 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLFN  125 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence            447999999999999999999988764

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=90.77  E-value=0.18  Score=45.19  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+.+
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         31 VVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998764

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=90.73  E-value=0.19  Score=43.07  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.5

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++|+|+.++|||+|++.|++.
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37889999999999999999765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.73  E-value=0.18  Score=45.44  Aligned_cols=22  Identities=36%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++|+|+.++|||+|++.|.+.
T Consensus        34 ~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14261         34 VTALIGPSGCGKSTLLRCFNRM   55 (253)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999865

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=90.72  E-value=0.18  Score=44.97  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|.+..
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        28 EFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            378899999999999999998764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.70  E-value=0.18  Score=45.26  Aligned_cols=23  Identities=26%  Similarity=0.515  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         31 IYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998764

>cd04136 Rap_like Rap-like subfamily

Probab=90.68  E-value=0.21  Score=40.70  Aligned_cols=22  Identities=32%  Similarity=0.167  Sum_probs=19.0

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|+.++|||+|+|++...
T Consensus         3 ki~i~G~~~vGKTsl~~~~~~~   24 (163)
T cd04136           3 KVVVLGSGGVGKSALTVQFVQG   24 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4778899999999999999753

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=90.66  E-value=0.19  Score=43.94  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|++..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          27 EALQVTGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999998753

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.66  E-value=0.19  Score=45.28  Aligned_cols=24  Identities=33%  Similarity=0.342  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|++.+
T Consensus        31 e~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         31 GVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            478999999999999999998764

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=90.65  E-value=0.19  Score=44.10  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.+.+..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         29 EALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378899999999999999998753

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.65  E-value=0.2  Score=45.30  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|.+.+
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         34 SITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            388999999999999999998764

>smart00175 RAB Rab subfamily of small GTPases

Probab=90.64  E-value=0.19  Score=40.79  Aligned_cols=21  Identities=29%  Similarity=0.224  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+..+|||+|+|+++..
T Consensus         3 v~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            788999999999999999754

Rab GTPases are implicated in vesicle trafficking.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=90.64  E-value=0.19  Score=45.65  Aligned_cols=24  Identities=33%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        40 e~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         40 QVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            478999999999999999998764

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=90.61  E-value=1.2  Score=46.82  Aligned_cols=101  Identities=23%  Similarity=0.274  Sum_probs=0.0

Q ss_pred             EEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCcccCCCCcccccceeeeeceEEeecCCcccchhhc
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFR  138 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r  138 (281)
                      |+|+|...+|||+|+|+|++.                                                           
T Consensus       453 I~ivG~~nvGKSSLin~l~~~-----------------------------------------------------------  473 (712)
T PRK09518        453 VALVGRPNVGKSSLLNQLTHE-----------------------------------------------------------  473 (712)
T ss_pred             EEEECCCCCCHHHHHHHHhCc-----------------------------------------------------------


Q ss_pred             cCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccCCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCC
Q psy5031         139 KGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFD  218 (281)
Q Consensus       139 ~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d  218 (281)
                                                      ...-.=...+++...-...|.+         +|..  +.|+||.|+..
T Consensus       474 --------------------------------~~~~v~~~~gtT~d~~~~~~~~---------~~~~--~~liDTaG~~~  510 (712)
T PRK09518        474 --------------------------------ERAVVNDLAGTTRDPVDEIVEI---------DGED--WLFIDTAGIKR  510 (712)
T ss_pred             --------------------------------cccccCCCCCCCcCcceeEEEE---------CCCE--EEEEECCCccc


Q ss_pred             CCcCcccchhhHHHHHhh------hhhhhhccCCCCChhhhhHhHHHHH
Q psy5031         219 SESTVRDCATVFALSTML------SSIQIYNLSQNIQEDDLQHLQLFTE  261 (281)
Q Consensus       219 ~~~s~~~d~~IFaLs~LL------SS~~IYNs~~~Ide~~L~~L~l~t~  261 (281)
                      ...........-.+.++-      .-.++|.....+.++++..+..+.+
T Consensus       511 ~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~  559 (712)
T PRK09518        511 RQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVD  559 (712)
T ss_pred             CcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=90.61  E-value=0.2  Score=44.98  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          29 FLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=90.61  E-value=0.25  Score=42.69  Aligned_cols=26  Identities=27%  Similarity=0.356  Sum_probs=23.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+|+|+|+.++|||+|+++|.+.+..
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~   27 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSA   27 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            37999999999999999999998754

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=90.58  E-value=0.2  Score=44.54  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+..
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         34 EFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            378999999999999999998753

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.56  E-value=0.22  Score=45.21  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        40 ~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         40 VTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            68999999999999999998764

>PRK10908 cell division protein FtsE; Provisional

Probab=90.55  E-value=0.2  Score=44.30  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=20.8

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|.+.+
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         29 EMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468889999999999999998654

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.54  E-value=0.21  Score=45.02  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         32 VTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            68999999999999999998764

>cd04117 Rab15 Rab15 subfamily

Probab=90.54  E-value=0.82  Score=37.94  Aligned_cols=20  Identities=25%  Similarity=0.235  Sum_probs=18.1

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.|+|+.++|||.|+++++.
T Consensus         3 i~vvG~~~~GKTsli~~~~~   22 (161)
T cd04117           3 LLLIGDSGVGKTCLLCRFTD   22 (161)
T ss_pred             EEEECcCCCCHHHHHHHHhc
Confidence            67999999999999999964

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=90.54  E-value=0.2  Score=44.28  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|++.+
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~   50 (223)
T TIGR03740        27 SVYGLLGPNGAGKSTLLKMITGIL   50 (223)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378899999999999999998754

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=90.53  E-value=0.2  Score=45.07  Aligned_cols=24  Identities=38%  Similarity=0.311  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        28 QVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            378899999999999999998764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=90.52  E-value=0.19  Score=46.17  Aligned_cols=26  Identities=27%  Similarity=0.262  Sum_probs=22.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      -+++|+|+.++|||+||+.|.+.+..
T Consensus        27 e~~~IvG~nGsGKSTLlk~l~Gl~~p   52 (255)
T cd03236          27 QVLGLVGPNGIGKSTALKILAGKLKP   52 (255)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            37889999999999999999887543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK06547 hypothetical protein; Provisional

Probab=90.51  E-value=0.33  Score=42.25  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=23.7

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+.-+|.|.|+.+||||+|.+.|...+
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            456699999999999999999998764

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=90.50  E-value=0.2  Score=44.55  Aligned_cols=24  Identities=21%  Similarity=0.164  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|++..
T Consensus        14 e~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         14 EHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            578999999999999999998754

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=90.48  E-value=0.2  Score=44.45  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|.+.+
T Consensus        34 e~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          34 QVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCcc
Confidence            578999999999999999998764

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG3596 Predicted GTPase [General function prediction only]

Probab=90.46  E-value=0.44  Score=45.46  Aligned_cols=25  Identities=36%  Similarity=0.441  Sum_probs=19.8

Q ss_pred             CceEEEEEEecccccChhHHHHHHHH
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      ..||- |=|+|..+.|||.|+|.|..
T Consensus        37 ~~pvn-vLi~G~TG~GKSSliNALF~   61 (296)
T COG3596          37 KEPVN-VLLMGATGAGKSSLINALFQ   61 (296)
T ss_pred             cCcee-EEEecCCCCcHHHHHHHHHh
Confidence            34554 34899999999999999973

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=90.45  E-value=0.21  Score=42.55  Aligned_cols=23  Identities=26%  Similarity=0.262  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.+++.+
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          29 RLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999998764

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=90.43  E-value=0.21  Score=44.91  Aligned_cols=22  Identities=36%  Similarity=0.374  Sum_probs=20.2

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++|+|+.++|||+||+.|.+.
T Consensus        31 ~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14240         31 VTALIGPSGCGKSTFLRTLNRM   52 (250)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999874

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=90.41  E-value=0.23  Score=45.53  Aligned_cols=24  Identities=33%  Similarity=0.308  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+..
T Consensus        46 e~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         46 TVTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999998764

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=90.40  E-value=0.19  Score=44.18  Aligned_cols=24  Identities=33%  Similarity=0.213  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+..
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          34 EMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             cEEEEECCCCCCHHHHHHHhcccC
Confidence            488999999999999999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=90.39  E-value=0.42  Score=46.88  Aligned_cols=45  Identities=24%  Similarity=0.223  Sum_probs=30.9

Q ss_pred             CHHHHHHHHccc----CCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          38 DYEALERILLQD----HVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        38 n~eal~~il~~~----~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +++|++.+...-    .-.+.+=.++.++||.++|||+|++.|.+.+..
T Consensus        56 ~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            566666654310    000223467999999999999999999988643

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=90.38  E-value=0.2  Score=44.74  Aligned_cols=24  Identities=17%  Similarity=0.281  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        30 e~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         30 EIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378899999999999999998764

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=90.37  E-value=0.21  Score=43.67  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|++.+
T Consensus        25 e~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          25 EITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999998764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=90.35  E-value=0.21  Score=45.35  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         33 EVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378899999999999999998764

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=90.34  E-value=0.3  Score=44.84  Aligned_cols=29  Identities=21%  Similarity=0.392  Sum_probs=26.4

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .++.+|+|+|+..||||++++.|...+.+
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~   34 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV   34 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence            56899999999999999999999988764

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=90.32  E-value=0.2  Score=45.97  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        35 ~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         35 IAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998764

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.31  E-value=0.23  Score=44.70  Aligned_cols=24  Identities=29%  Similarity=0.283  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+..
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         31 ELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcc
Confidence            468999999999999999998764

>cd01895 EngA2 EngA2 subfamily

Probab=90.29  E-value=0.2  Score=40.53  Aligned_cols=21  Identities=33%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..++|||+|+|+|++.
T Consensus         5 i~i~G~~~~GKstli~~l~~~   25 (174)
T cd01895           5 IAIIGRPNVGKSSLVNALLGE   25 (174)
T ss_pred             EEEEcCCCCCHHHHHHHHhCc
Confidence            789999999999999999754

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=90.26  E-value=0.21  Score=42.98  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          28 IVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.24  E-value=0.22  Score=45.29  Aligned_cols=24  Identities=29%  Similarity=0.301  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+..
T Consensus        39 e~~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         39 SVTALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998753

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=90.23  E-value=0.21  Score=44.30  Aligned_cols=25  Identities=32%  Similarity=0.363  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+++|+|+.++|||+||+.|.+.+.
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        27 EVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4788899999999999999987643

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.22  E-value=0.21  Score=45.66  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        36 e~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         36 QWTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998764

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=90.22  E-value=0.22  Score=44.58  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        12 e~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184        12 EFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd04140 ARHI_like ARHI subfamily

Probab=90.22  E-value=0.23  Score=41.15  Aligned_cols=21  Identities=38%  Similarity=0.238  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|+.++|||.|+|+++..
T Consensus         4 v~~vG~~~vGKTsli~~~~~~   24 (165)
T cd04140           4 VVVFGAGGVGKSSLVLRFVKG   24 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999999754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=90.21  E-value=0.22  Score=43.57  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|++.+
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         28 ELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.21  E-value=0.22  Score=44.72  Aligned_cols=23  Identities=26%  Similarity=0.278  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+.+
T Consensus        32 ~~~i~G~nGsGKSTLl~~i~G~~   54 (252)
T PRK14272         32 VNALIGPSGCGKTTFLRAINRMH   54 (252)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999998764

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.16  E-value=0.21  Score=45.94  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        34 e~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         34 SYTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=90.16  E-value=0.3  Score=38.43  Aligned_cols=23  Identities=26%  Similarity=0.418  Sum_probs=20.5

Q ss_pred             EEEecccccChhHHHHHHHHhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      |-+.||.++|||+|+..+.+++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            45899999999999999999863

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=90.15  E-value=0.22  Score=40.62  Aligned_cols=21  Identities=38%  Similarity=0.227  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|+.++|||.|+|++...
T Consensus         2 i~i~G~~~~GKTsl~~~~~~~   22 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKHA   22 (160)
T ss_pred             EEEEcCCCCCHHHHHHHHhcC
Confidence            678899999999999999754

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=90.07  E-value=0.24  Score=42.88  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=20.2

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+||.++|||+|++.|...+
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            67889999999999999997653

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=90.07  E-value=0.23  Score=43.85  Aligned_cols=24  Identities=33%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        35 e~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        35 ECVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=90.06  E-value=0.24  Score=40.09  Aligned_cols=22  Identities=36%  Similarity=0.161  Sum_probs=19.3

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|+++|+.++|||+|+|++...
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3788999999999999999754

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.06  E-value=0.22  Score=46.13  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=21.8

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -+++|+|+.++|||+||+.|++.+.
T Consensus        38 e~~~l~G~nGsGKSTLl~~l~Gl~~   62 (289)
T PRK13645         38 KVTCVIGTTGSGKSTMIQLTNGLII   62 (289)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3789999999999999999987643

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.05  E-value=0.26  Score=44.34  Aligned_cols=23  Identities=39%  Similarity=0.375  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+..
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         31 VTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            88999999999999999998764

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=90.03  E-value=0.23  Score=44.16  Aligned_cols=23  Identities=30%  Similarity=0.574  Sum_probs=21.4

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ||+|+|..+||||+|++.|...+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~   23 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRIL   23 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            68999999999999999999876

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=90.02  E-value=0.22  Score=46.49  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=21.6

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ||+|+|+.++|||+|++.|.+.+.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~   24 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFG   24 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhC
Confidence            689999999999999999987754

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=90.01  E-value=0.23  Score=44.85  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|++.+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        28 KVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998754

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=90.01  E-value=0.26  Score=40.35  Aligned_cols=21  Identities=33%  Similarity=0.233  Sum_probs=19.1

Q ss_pred             EEEEEecccccChhHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll   77 (281)
                      .+++|+|+.++|||+|++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            467999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.00  E-value=0.24  Score=44.65  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++|+|+.++|||+||+.|.+.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         33 ITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            7899999999999999999864

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=89.98  E-value=0.23  Score=45.61  Aligned_cols=23  Identities=39%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+.+
T Consensus        40 ~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         40 FVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999998764

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=89.96  E-value=0.52  Score=41.55  Aligned_cols=37  Identities=32%  Similarity=0.402  Sum_probs=27.0

Q ss_pred             HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +|++.++..    +..+++  |.|+.+|||||+|..+.+.+..
T Consensus         8 ~a~~~~l~~----~~~~~~--l~G~aGtGKT~~l~~~~~~~~~   44 (196)
T PF13604_consen    8 EAVRAILTS----GDRVSV--LQGPAGTGKTTLLKALAEALEA   44 (196)
T ss_dssp             HHHHHHHHC----TCSEEE--EEESTTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc----CCeEEE--EEECCCCCHHHHHHHHHHHHHh
Confidence            577777642    334544  5899999999999999887654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=89.96  E-value=0.24  Score=42.51  Aligned_cols=23  Identities=35%  Similarity=0.395  Sum_probs=20.4

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -+++|+|+.++|||+|++.|.+.
T Consensus        26 ~~~~l~G~nGsGKStLl~~i~G~   48 (180)
T cd03214          26 EIVGILGPNGAGKSTLLKTLAGL   48 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37889999999999999999765

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK07261 topology modulation protein; Provisional

Probab=89.96  E-value=0.27  Score=42.39  Aligned_cols=22  Identities=27%  Similarity=0.262  Sum_probs=19.6

Q ss_pred             EEEecccccChhHHHHHHHHhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |.|+|+.++|||+|+..|.+.+
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999997763

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=89.91  E-value=0.21  Score=45.60  Aligned_cols=24  Identities=38%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|++..
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         38 KVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCC
Confidence            378999999999999999998753

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=89.91  E-value=0.24  Score=44.10  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|++.+
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          29 EVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCc
Confidence            378899999999999999998764

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=89.88  E-value=0.24  Score=44.28  Aligned_cols=24  Identities=33%  Similarity=0.371  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|++.+
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         28 EVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.88  E-value=0.24  Score=44.59  Aligned_cols=23  Identities=35%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+.+
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14249         32 ITAIIGPSGCGKSTLLRALNRMN   54 (251)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            67899999999999999998764

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=89.86  E-value=0.24  Score=45.45  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|++.+
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~Gl~   59 (271)
T PRK13632         36 EYVAILGHNGSGKSTISKILTGLL   59 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998764

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=89.86  E-value=0.23  Score=50.09  Aligned_cols=26  Identities=23%  Similarity=0.499  Sum_probs=22.1

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -|. |+|+||-|||||++..+|.+-+.
T Consensus        17 dIY-iGVVGPVRTGKSTFIKRFMel~V   42 (492)
T PF09547_consen   17 DIY-IGVVGPVRTGKSTFIKRFMELLV   42 (492)
T ss_pred             ceE-EEeecCcccCchhHHHHHHHHhc
Confidence            344 69999999999999999998753

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=89.86  E-value=0.3  Score=42.51  Aligned_cols=24  Identities=17%  Similarity=0.187  Sum_probs=21.3

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ++.|+|+.++|||+|++.+.+.+.
T Consensus         5 ~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          5 SYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            688999999999999999988653

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=89.86  E-value=0.23  Score=44.74  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|.+..
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~   55 (255)
T PRK11300         32 EIVSLIGPNGAGKTTVFNCLTGFY   55 (255)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCc
Confidence            478999999999999999998764

>PRK12735 elongation factor Tu; Reviewed

Probab=89.85  E-value=1  Score=43.95  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+|.--|+|+|...+|||+|+|+|+..
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~   35 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKV   35 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHh
Confidence            578888999999999999999999864

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=89.84  E-value=0.24  Score=45.48  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|.+.+
T Consensus        51 e~~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          51 EIFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998764

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00101 ureG urease accessory protein UreG

Probab=89.84  E-value=0.3  Score=43.40  Aligned_cols=24  Identities=33%  Similarity=0.531  Sum_probs=21.5

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .|+|+|+.++|||+|++++++.+.
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            588999999999999999998753

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=89.83  E-value=0.24  Score=43.35  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=20.6

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++|+|+.++|||+|++.|.+.
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          27 EVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47889999999999999999765

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR01393 lepA GTP-binding protein LepA

Probab=89.83  E-value=1.6  Score=45.25  Aligned_cols=24  Identities=38%  Similarity=0.484  Sum_probs=20.8

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |-=|+|+|....|||+|+++|+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~   26 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEY   26 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHH
Confidence            445789999999999999999865

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=89.82  E-value=0.24  Score=45.38  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|.+.+
T Consensus        40 e~~~i~G~NGsGKSTLl~~l~Gl~   63 (267)
T PRK15112         40 QTLAIIGENGSGKSTLAKMLAGMI   63 (267)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            368899999999999999998764

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.79  E-value=0.25  Score=45.42  Aligned_cols=24  Identities=33%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+..
T Consensus        40 e~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         40 KVTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            378899999999999999998753

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=89.78  E-value=0.25  Score=42.97  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -+++|+|+.++|||+|++.|...
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          34 TLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999753

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=89.77  E-value=0.24  Score=45.16  Aligned_cols=23  Identities=39%  Similarity=0.413  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~i~G~~   52 (258)
T PRK13548         30 VVAILGPNGAGKSTLLRALSGEL   52 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=89.76  E-value=0.24  Score=46.78  Aligned_cols=25  Identities=16%  Similarity=0.331  Sum_probs=21.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+++|+|+.++|||+|++.|.+.+.
T Consensus        34 e~v~iiG~nGsGKSTLl~~L~Gl~~   58 (305)
T PRK13651         34 EFIAIIGQTGSGKTTFIEHLNALLL   58 (305)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3789999999999999999987654

>KOG1547|consensus

Probab=89.75  E-value=1.1  Score=42.59  Aligned_cols=20  Identities=30%  Similarity=0.360  Sum_probs=16.3

Q ss_pred             CCCceEEEEEecCCCCCCCc
Q psy5031         202 TGEKAAVILLDTQGTFDSES  221 (281)
Q Consensus       202 ~g~~v~VlLlDTEG~~d~~~  221 (281)
                      +|=++.+-++||+|++|.=.
T Consensus       100 ~gVklkltviDTPGfGDqIn  119 (336)
T KOG1547|consen  100 KGVKLKLTVIDTPGFGDQIN  119 (336)
T ss_pred             cceEEEEEEecCCCcccccC
Confidence            56678899999999998743

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=89.73  E-value=1.4  Score=39.16  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=22.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .||.++||.++||++.+=.|..++..
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~   27 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKL   27 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhh
Confidence            37899999999999999999887643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=89.73  E-value=0.24  Score=45.16  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        26 e~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378899999999999999998764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=89.72  E-value=0.25  Score=44.94  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|.+..
T Consensus        31 e~~~i~G~nGsGKSTLl~~i~G~~   54 (262)
T PRK09984         31 EMVALLGPSGSGKSTLLRHLSGLI   54 (262)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            378999999999999999998754

>PRK00698 tmk thymidylate kinase; Validated

Probab=89.71  E-value=0.33  Score=41.71  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=22.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+|+|.|+-++|||++++.|..++..
T Consensus         4 ~~I~ieG~~gsGKsT~~~~L~~~l~~   29 (205)
T PRK00698          4 MFITIEGIDGAGKSTQIELLKELLEQ   29 (205)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            37899999999999999999988644

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=89.70  E-value=0.25  Score=45.11  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        31 e~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         31 KILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998754

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=89.70  E-value=0.29  Score=47.63  Aligned_cols=26  Identities=35%  Similarity=0.429  Sum_probs=23.5

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      =.+|.|+||.+||||++|+.|++++.
T Consensus       134 ~glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       134 EGIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999999864

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd00157 Rho Rho (Ras homology) family

Probab=89.70  E-value=0.28  Score=40.26  Aligned_cols=21  Identities=29%  Similarity=0.173  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|+|+|...
T Consensus         3 i~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           3 IVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            668999999999999999754

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=89.69  E-value=0.25  Score=44.54  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=21.0

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        30 EVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378899999999999999998764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=89.69  E-value=0.24  Score=44.80  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        30 ~~~l~G~nGsGKSTLl~~l~Gl~   52 (255)
T PRK11231         30 ITALIGPNGCGKSTLLKCFARLL   52 (255)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            78999999999999999998753

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=89.68  E-value=0.24  Score=45.40  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        35 ~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         35 ITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=89.68  E-value=0.24  Score=45.19  Aligned_cols=24  Identities=33%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|++.+
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T TIGR02769        38 ETVGLLGRSGCGKSTLARLLLGLE   61 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378899999999999999998764

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=89.67  E-value=0.26  Score=43.30  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=21.7

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+++|+|+.++|||+|++.|++.+.
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~~   49 (213)
T TIGR01277        25 EIVAIMGPSGAGKSTLLNLIAGFIE   49 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4688999999999999999987643

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=89.64  E-value=0.23  Score=44.68  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++|+|+.++|||+|++.|++.
T Consensus        34 e~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         34 EIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCC
Confidence            47889999999999999999764

>cd00879 Sar1 Sar1 subfamily

Probab=89.63  E-value=0.26  Score=41.79  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=18.5

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      -|.|+|+.++|||+|+|++.+
T Consensus        21 ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879          21 KILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            348999999999999999964

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=89.62  E-value=0.25  Score=44.02  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+..
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         26 ERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378899999999999999998754

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=89.61  E-value=0.23  Score=44.46  Aligned_cols=23  Identities=30%  Similarity=0.221  Sum_probs=20.4

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++|+|+.++|||+|++.|.+.
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         28 EVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCC
Confidence            37889999999999999999775

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=89.60  E-value=0.28  Score=43.37  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|++.+
T Consensus        41 e~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          41 EVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCc
Confidence            378999999999999999998764

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=89.59  E-value=0.23  Score=46.15  Aligned_cols=29  Identities=28%  Similarity=0.244  Sum_probs=25.6

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .|=-|++|+||.++|||+||..|..++..
T Consensus        25 ~pGev~ailGPNGAGKSTlLk~LsGel~p   53 (259)
T COG4559          25 RPGEVLAILGPNGAGKSTLLKALSGELSP   53 (259)
T ss_pred             cCCcEEEEECCCCccHHHHHHHhhCccCC
Confidence            45678999999999999999999988764

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=89.58  E-value=0.29  Score=44.85  Aligned_cols=24  Identities=29%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|.+.+
T Consensus        47 e~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         47 KITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc
Confidence            378999999999999999998754

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=89.57  E-value=0.23  Score=44.25  Aligned_cols=23  Identities=35%  Similarity=0.361  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+.+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~G~~   55 (237)
T PRK11614         33 IVTLIGANGAGKTTLLGTLCGDP   55 (237)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            78999999999999999997653

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=89.53  E-value=0.24  Score=45.38  Aligned_cols=23  Identities=35%  Similarity=0.309  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         29 VTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            78999999999999999998754

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.52  E-value=0.29  Score=44.08  Aligned_cols=23  Identities=30%  Similarity=0.293  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+..
T Consensus        33 ~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         33 VTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            78899999999999999998763

>PRK06762 hypothetical protein; Provisional

Probab=89.52  E-value=0.35  Score=40.59  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+|+.++|||++...|.+.+
T Consensus         4 li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          4 LIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            67889999999999999998875

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=89.50  E-value=0.24  Score=44.86  Aligned_cols=23  Identities=35%  Similarity=0.280  Sum_probs=19.9

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |-|+++|+.++|||+|+|+|.+.
T Consensus         1 ~~v~lvG~~~~GKStLl~~Ltg~   23 (233)
T cd01896           1 ARVALVGFPSVGKSTLLSKLTNT   23 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            35789999999999999999754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=89.46  E-value=0.35  Score=40.81  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=22.4

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +|+|.|+-++|||++++.|...+..
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~   26 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEA   26 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6889999999999999999988753

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=89.46  E-value=0.71  Score=39.04  Aligned_cols=42  Identities=21%  Similarity=0.262  Sum_probs=32.1

Q ss_pred             HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhc
Q psy5031          40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFT   83 (281)
Q Consensus        40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~   83 (281)
                      .|+...+..+ ..+|| =|+|.-|+.+|||||+...|++.++..
T Consensus        39 ~ai~~~l~~~-~p~Kp-LVlSfHG~tGtGKn~v~~liA~~ly~~   80 (127)
T PF06309_consen   39 NAIKGHLANP-NPRKP-LVLSFHGWTGTGKNFVSRLIAEHLYKS   80 (127)
T ss_pred             HHHHHHHcCC-CCCCC-EEEEeecCCCCcHHHHHHHHHHHHHhc
Confidence            4555555432 24667 689999999999999999999998753

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PLN02348 phosphoribulokinase

Probab=89.46  E-value=0.33  Score=48.15  Aligned_cols=28  Identities=25%  Similarity=0.192  Sum_probs=25.0

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ...||+|+|+.++|||+|+++|.+.+..
T Consensus        48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~   75 (395)
T PLN02348         48 GTVVIGLAADSGCGKSTFMRRLTSVFGG   75 (395)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4579999999999999999999998754

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=89.44  E-value=0.31  Score=43.38  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=23.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      -||+++||.++|||+|+.++...+..
T Consensus        29 eivtlMGPSGcGKSTLls~~~G~La~   54 (213)
T COG4136          29 EIVTLMGPSGCGKSTLLSWMIGALAG   54 (213)
T ss_pred             cEEEEECCCCccHHHHHHHHHhhccc
Confidence            48999999999999999999888643

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=89.44  E-value=0.3  Score=44.93  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=21.6

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        51 e~~~I~G~nGsGKSTLl~~i~Gl~   74 (271)
T PRK14238         51 EVTAIIGPSGCGKSTYIKTLNRMV   74 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            488999999999999999998864

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=89.42  E-value=0.27  Score=45.62  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=21.8

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+++|+|+.++|||+|++.|.+.+.
T Consensus        34 e~~~i~G~nGsGKSTLl~~L~Gl~~   58 (286)
T PRK13646         34 KYYAIVGQTGSGKSTLIQNINALLK   58 (286)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4789999999999999999987653

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=89.41  E-value=0.26  Score=41.26  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.0

Q ss_pred             EEEecccccChhHHHHHHHHhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      |.++|+.++|||++++.|.+.+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            45889999999999999998753

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=89.40  E-value=0.43  Score=40.84  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=18.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +..|.||.+||||+++-.++..+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            77789999999999888888776

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=89.40  E-value=0.3  Score=44.62  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++|+|+.++|||+||+.|.+.
T Consensus        37 e~~~i~G~nGsGKSTLl~~l~Gl   59 (264)
T PRK14243         37 QITAFIGPSGCGKSTILRCFNRL   59 (264)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            47889999999999999999864

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=89.37  E-value=0.28  Score=43.15  Aligned_cols=24  Identities=33%  Similarity=0.322  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+-.
T Consensus        28 e~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          28 QLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            478999999999999999998754

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=89.36  E-value=0.29  Score=41.84  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++|+|+.++|||+||+.|.+.
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~   51 (178)
T cd03247          30 KIALLGRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6889999999999999999765

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=89.34  E-value=0.29  Score=43.68  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             EEEEEEecccccChhHHHHHHHHhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      =.+++|+|+.++|||+|++.|++..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~g~~   50 (232)
T cd03300          26 GEFFTLLGPSGCGKTTLLRLIAGFE   50 (232)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578899999999999999998764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07429 phosphoribulokinase; Provisional

Probab=89.34  E-value=0.34  Score=46.63  Aligned_cols=28  Identities=29%  Similarity=0.329  Sum_probs=24.4

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ...-+|+|+|+.++|||+|++.|.+.+.
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~   33 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLG   33 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence            3456999999999999999999998764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=89.32  E-value=0.27  Score=43.86  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=21.0

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+..
T Consensus        49 e~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          49 ERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368899999999999999998754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.32  E-value=0.31  Score=43.81  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=20.6

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++|+|+.++|||+||+.|++.
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl   52 (250)
T PRK14266         30 SVTALIGPSGCGKSTFIRTLNRM   52 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            37889999999999999999875

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=89.32  E-value=0.31  Score=41.53  Aligned_cols=24  Identities=42%  Similarity=0.558  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.+.+.+
T Consensus        29 ~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            378999999999999999997653

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=89.30  E-value=0.28  Score=45.39  Aligned_cols=24  Identities=17%  Similarity=0.209  Sum_probs=21.6

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        34 e~~~I~G~nGaGKSTLl~~l~G~~   57 (282)
T PRK13640         34 SWTALIGHNGSGKSTISKLINGLL   57 (282)
T ss_pred             CEEEEECCCCCcHHHHHHHHhccc
Confidence            478999999999999999998765

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=89.29  E-value=0.27  Score=40.06  Aligned_cols=21  Identities=24%  Similarity=0.127  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|+.++|||.|+|++.+.
T Consensus         2 i~iiG~~~~GKssli~~~~~~   22 (158)
T cd00878           2 ILILGLDGAGKTTILYKLKLG   22 (158)
T ss_pred             EEEEcCCCCCHHHHHHHHhcC
Confidence            678999999999999999754

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=89.29  E-value=0.3  Score=40.18  Aligned_cols=22  Identities=36%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .|.++|...+|||.|+|+|.+.
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~   23 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRA   23 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Confidence            4788999999999999999754

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=89.28  E-value=0.28  Score=44.44  Aligned_cols=24  Identities=29%  Similarity=0.299  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|++.+
T Consensus        32 e~~~l~G~nGsGKSTLl~~i~G~~   55 (257)
T PRK10619         32 DVISIIGSSGSGKSTFLRCINFLE   55 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999998764

>KOG2485|consensus

Probab=89.27  E-value=0.84  Score=44.27  Aligned_cols=25  Identities=32%  Similarity=0.219  Sum_probs=19.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .-|=|+|....|||.|+|.+.+...
T Consensus       144 ~~vmVvGvPNVGKSsLINa~r~~~L  168 (335)
T KOG2485|consen  144 YNVMVVGVPNVGKSSLINALRNVHL  168 (335)
T ss_pred             eeEEEEcCCCCChHHHHHHHHHHHh
Confidence            3455788888999999998876643

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=89.27  E-value=0.28  Score=45.21  Aligned_cols=24  Identities=25%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (274)
T PRK13644         29 EYIGIIGKNGSGKSTLALHLNGLL   52 (274)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998754

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=89.26  E-value=0.28  Score=45.53  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.6

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -+++|+|+.++|||+||+.|++.+.
T Consensus        34 e~~~iiG~NGaGKSTLl~~l~Gl~~   58 (287)
T PRK13641         34 SFVALVGHTGSGKSTLMQHFNALLK   58 (287)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3689999999999999999987643

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=89.26  E-value=0.33  Score=48.87  Aligned_cols=26  Identities=19%  Similarity=0.139  Sum_probs=22.6

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      --||+|+|+.+||||+|++.|...+.
T Consensus       212 PlIIGIsG~qGSGKSTLa~~L~~lL~  237 (460)
T PLN03046        212 PLVIGFSAPQGCGKTTLVFALDYLFR  237 (460)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            36999999999999999999976653

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=89.25  E-value=0.29  Score=42.62  Aligned_cols=23  Identities=39%  Similarity=0.553  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.+++..
T Consensus        33 ~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          33 LVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            78899999999999999998753

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=89.25  E-value=0.28  Score=44.01  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.0

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        48 e~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          48 EIVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            478899999999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=89.20  E-value=0.29  Score=43.57  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+..
T Consensus         7 e~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         7 ELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999998764

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=89.20  E-value=0.29  Score=43.24  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+..
T Consensus        39 ~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         39 ALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998753

>TIGR00017 cmk cytidylate kinase

Probab=89.20  E-value=0.35  Score=43.63  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=21.5

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|+|.|+.++|||++++.|...+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         4 IIAIDGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            699999999999999999987543

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=89.19  E-value=0.28  Score=40.44  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.1

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+.++|..+.|||+|+|.|++.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~  106 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGK  106 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5678899999999999999754

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=89.19  E-value=0.28  Score=45.88  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.8

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+++++|+.++|||+|++.|++.+.
T Consensus        20 e~~~l~G~NGaGKSTLl~~l~Gl~~   44 (302)
T TIGR01188        20 EVFGFLGPNGAGKTTTIRMLTTLLR   44 (302)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3789999999999999999987653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=89.01  E-value=0.29  Score=45.52  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+-+
T Consensus        34 ~v~i~G~nGsGKSTLl~~l~Gl~   56 (288)
T PRK13643         34 YTALIGHTGSGKSTLLQHLNGLL   56 (288)
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            78999999999999999998754

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.00  E-value=0.31  Score=44.97  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        48 ~~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         48 IIAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.99  E-value=0.34  Score=44.05  Aligned_cols=24  Identities=29%  Similarity=0.306  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|++.+
T Consensus        34 e~~~l~G~nGsGKSTLlk~l~Gl~   57 (259)
T PRK14260         34 KVTAIIGPSGCGKSTFIKTLNRIS   57 (259)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            378899999999999999998764

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=88.96  E-value=0.28  Score=49.00  Aligned_cols=24  Identities=33%  Similarity=0.376  Sum_probs=20.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -.|+|+|+.++|||+|+|.|++..
T Consensus       362 ~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       362 ERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            356788999999999999998764

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=88.95  E-value=0.28  Score=44.84  Aligned_cols=24  Identities=38%  Similarity=0.386  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        34 e~~~i~G~nGsGKSTLl~~i~G~~   57 (265)
T PRK10253         34 HFTAIIGPNGCGKSTLLRTLSRLM   57 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCC
Confidence            378999999999999999997653

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=88.93  E-value=0.29  Score=45.31  Aligned_cols=23  Identities=35%  Similarity=0.355  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|++.+
T Consensus        29 ~~~l~G~nGsGKSTLl~~laG~~   51 (272)
T PRK13547         29 VTALLGRNGAGKSTLLKALAGDL   51 (272)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998754

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=88.91  E-value=0.36  Score=42.90  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.7

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+|+|.|..+||||++++.|.+.
T Consensus         6 ~~igitG~igsGKSt~~~~l~~~   28 (208)
T PRK14731          6 FLVGVTGGIGSGKSTVCRFLAEM   28 (208)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            47899999999999999999763

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=88.89  E-value=0.31  Score=45.14  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+|+.++|||+|++.|.+.+.
T Consensus        35 ~~~i~G~nGaGKSTLl~~i~G~~~   58 (279)
T PRK13635         35 WVAIVGHNGSGKSTLAKLLNGLLL   58 (279)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            689999999999999999987643

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=88.88  E-value=0.34  Score=43.31  Aligned_cols=22  Identities=27%  Similarity=0.370  Sum_probs=20.3

Q ss_pred             EEEEEecccccChhHHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .+++|+||.++|||+|++.+..
T Consensus        26 ~i~~ivGpNGaGKSTll~~i~~   47 (212)
T cd03274          26 SFSAIVGPNGSGKSNVIDSMLF   47 (212)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999973

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=88.87  E-value=1.2  Score=43.92  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=20.4

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +.+.. |=++|+.++|||+++|-|+..
T Consensus        21 Gi~f~-im~~G~sG~GKttfiNtL~~~   46 (373)
T COG5019          21 GIDFT-IMVVGESGLGKTTFINTLFGT   46 (373)
T ss_pred             CCceE-EEEecCCCCchhHHHHhhhHh
Confidence            44444 457899999999999999765

>cd00880 Era_like Era (E

Probab=88.85  E-value=0.2  Score=39.12  Aligned_cols=19  Identities=42%  Similarity=0.450  Sum_probs=17.0

Q ss_pred             EecccccChhHHHHHHHHh
Q psy5031          61 VAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        61 I~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+.++|||+|+|.|.+.
T Consensus         1 i~G~~gsGKstl~~~l~~~   19 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQ   19 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCc
Confidence            5899999999999999765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=88.84  E-value=0.62  Score=45.04  Aligned_cols=29  Identities=17%  Similarity=0.165  Sum_probs=25.5

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+-.+|+|.|+.++|||+|++.|...+..
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~   82 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIE   82 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45679999999999999999999988754

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.82  E-value=0.32  Score=44.30  Aligned_cols=24  Identities=33%  Similarity=0.337  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+..
T Consensus        34 e~~~I~G~nGsGKSTLl~~l~Gl~   57 (261)
T PRK14258         34 KVTAIIGPSGCGKSTFLKCLNRMN   57 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccc
Confidence            378899999999999999998764

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=88.81  E-value=0.32  Score=44.89  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|++.+
T Consensus        31 e~~~i~G~NGsGKSTLl~~l~Gl~   54 (277)
T PRK13652         31 SRIAVIGPNGAGKSTLFRHFNGIL   54 (277)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999998764

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=88.80  E-value=0.32  Score=44.96  Aligned_cols=25  Identities=20%  Similarity=0.230  Sum_probs=21.7

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -+++|+|+.++|||+|++.|++.+.
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~   58 (279)
T PRK13650         34 EWLSIIGHNGSGKSTTVRLIDGLLE   58 (279)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3689999999999999999987653

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.79  E-value=0.33  Score=44.23  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        43 e~~~i~G~nGsGKSTLl~~l~Gl~   66 (265)
T PRK14252         43 QVTALIGPSGCGKSTFLRCFNRMH   66 (265)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccc
Confidence            378999999999999999998653

>PRK04182 cytidylate kinase; Provisional

Probab=88.74  E-value=0.41  Score=40.07  Aligned_cols=23  Identities=17%  Similarity=0.427  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+|..+||||++...|...+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l   24 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            68999999999999999998764

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=88.68  E-value=0.32  Score=43.41  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        29 ELRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=88.65  E-value=0.29  Score=40.55  Aligned_cols=21  Identities=29%  Similarity=0.194  Sum_probs=18.6

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+..+|||.|+|+++..
T Consensus         1 i~i~G~~~vGKTsli~~~~~~   21 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTN   21 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhC
Confidence            578999999999999999754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=88.64  E-value=0.35  Score=40.48  Aligned_cols=21  Identities=29%  Similarity=0.249  Sum_probs=18.3

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+++|+..+|||+|+|+++..
T Consensus         4 v~l~G~~g~GKTtl~~~~~~~   24 (180)
T cd04137           4 IAVLGSRSVGKSSLTVQFVEG   24 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            568899999999999999753

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=88.64  E-value=0.32  Score=45.46  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++++|+.++|||+||+.|++.+
T Consensus        31 e~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        31 ECFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999998764

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=88.62  E-value=0.35  Score=38.42  Aligned_cols=24  Identities=25%  Similarity=0.128  Sum_probs=21.1

Q ss_pred             EEEecccccChhHHHHHHHHhhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      |-|.|+.++|||+|++.|++.+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~   24 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLK   24 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHH
Confidence            458999999999999999988764

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=88.61  E-value=0.38  Score=39.29  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|++++...
T Consensus         2 i~vvG~~~vGKtsl~~~~~~~   22 (162)
T PF00071_consen    2 IVVVGDSGVGKTSLINRLING   22 (162)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999754

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=88.60  E-value=0.41  Score=41.83  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=25.3

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhhhc
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMNFT   83 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~~   83 (281)
                      ..|++|+|...|||++|+..+.+.+...
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~   29 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKAR   29 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence            4699999999999999999999988764

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.60  E-value=0.34  Score=44.80  Aligned_cols=24  Identities=33%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|.+.+
T Consensus        48 e~~~I~G~nGsGKSTLl~~l~Gl~   71 (276)
T PRK14271         48 AVTSLMGPTGSGKTTFLRTLNRMN   71 (276)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            468999999999999999998754

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=88.58  E-value=0.35  Score=42.74  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        32 ~~~~I~G~nGsGKStLl~~l~G~~   55 (220)
T TIGR02982        32 EIVILTGPSGSGKTTLLTLIGGLR   55 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            588999999999999999998754

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK08118 topology modulation protein; Reviewed

Probab=88.55  E-value=0.4  Score=41.28  Aligned_cols=24  Identities=29%  Similarity=0.267  Sum_probs=20.9

Q ss_pred             EEEecccccChhHHHHHHHHhhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      |.|+|+.++|||+|+..|.+.+..
T Consensus         4 I~I~G~~GsGKSTlak~L~~~l~~   27 (167)
T PRK08118          4 IILIGSGGSGKSTLARQLGEKLNI   27 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            788999999999999999887543

>PF05729 NACHT: NACHT domain

Probab=88.53  E-value=0.46  Score=38.63  Aligned_cols=25  Identities=32%  Similarity=0.313  Sum_probs=22.0

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ++-|.|+.++|||.+|..+...+..
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~   26 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAE   26 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHh
Confidence            6789999999999999999987654

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.53  E-value=0.35  Score=44.96  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++|+|+.++|||+||+.|.+.
T Consensus        66 e~~~l~G~nGsGKSTLl~~L~Gl   88 (286)
T PRK14275         66 YVTAIIGPSGCGKSTFLRAINRM   88 (286)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            37899999999999999999874

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=88.51  E-value=0.33  Score=46.16  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        53 e~~~I~G~nGsGKSTLl~~L~Gl~   76 (320)
T PRK13631         53 KIYFIIGNSGSGKSTLVTHFNGLI   76 (320)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

>cd04135 Tc10 TC10 subfamily

Probab=88.50  E-value=0.37  Score=39.93  Aligned_cols=21  Identities=29%  Similarity=0.165  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|+|++...
T Consensus         3 i~i~G~~~~GKTsl~~~~~~~   23 (174)
T cd04135           3 CVVVGDGAVGKTCLLMSYAND   23 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999999754

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04157 Arl6 Arl6 subfamily

Probab=88.49  E-value=0.32  Score=39.56  Aligned_cols=20  Identities=25%  Similarity=0.353  Sum_probs=17.9

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.++|+.++|||.|+|+|..
T Consensus         2 i~~vG~~~~GKTsl~~~l~~   21 (162)
T cd04157           2 ILVVGLDNSGKTTIINQLKP   21 (162)
T ss_pred             EEEECCCCCCHHHHHHHHcc
Confidence            57889999999999999964

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=88.47  E-value=0.34  Score=42.25  Aligned_cols=24  Identities=29%  Similarity=0.308  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|++.+
T Consensus        36 e~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          36 ELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378899999999999999998653

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.47  E-value=0.35  Score=44.97  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|++.+
T Consensus        66 e~~~I~G~nGsGKSTLl~~l~Gl~   89 (285)
T PRK14254         66 QVTAMIGPSGCGKSTFLRCINRMN   89 (285)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            378999999999999999998764

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=88.44  E-value=0.33  Score=46.51  Aligned_cols=24  Identities=29%  Similarity=0.282  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|++.+
T Consensus        32 ei~~iiG~nGsGKSTLlk~L~Gl~   55 (343)
T PRK11153         32 EIFGVIGASGAGKSTLIRCINLLE   55 (343)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            478899999999999999998764

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=88.39  E-value=0.34  Score=44.64  Aligned_cols=25  Identities=28%  Similarity=0.151  Sum_probs=21.7

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -+++|+|+.++|||+|++.|.+.+.
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~   56 (274)
T PRK13647         32 SKTALLGPNGAGKSTLLLHLNGIYL   56 (274)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            4788999999999999999987643

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=88.36  E-value=0.35  Score=43.81  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|.+.+
T Consensus        30 e~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418         30 RVLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378899999999999999998764

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=88.35  E-value=0.31  Score=44.15  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+++|+|+.++|||+|++.|.+.
T Consensus        23 ei~~l~G~nGsGKSTLl~~l~Gl   45 (248)
T PRK03695         23 EILHLVGPNGAGKSTLLARMAGL   45 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCC
Confidence            48999999999999999999765

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=88.34  E-value=0.33  Score=43.94  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|.+.+
T Consensus        28 e~~~i~G~nGsGKSTLl~~i~G~~   51 (256)
T TIGR03873        28 SLTGLLGPNGSGKSTLLRLLAGAL   51 (256)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCC
Confidence            378899999999999999998754

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK04213 GTP-binding protein; Provisional

Probab=88.34  E-value=0.33  Score=41.70  Aligned_cols=23  Identities=26%  Similarity=0.173  Sum_probs=20.0

Q ss_pred             EEEEEEecccccChhHHHHHHHH
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      ..-|.++|...+|||+|+|+|..
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~   31 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTG   31 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            44688999999999999999964

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=88.33  E-value=0.35  Score=44.96  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+|+.++|||+|++.|++.+.
T Consensus        35 ~~~i~G~nGaGKSTLl~~l~Gl~~   58 (287)
T PRK13637         35 FVGLIGHTGSGKSTLIQHLNGLLK   58 (287)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            789999999999999999987653

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=88.28  E-value=0.39  Score=44.08  Aligned_cols=24  Identities=33%  Similarity=0.281  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        52 e~~~I~G~nGsGKSTLl~~laGl~   75 (272)
T PRK14236         52 RVTAFIGPSGCGKSTLLRCFNRMN   75 (272)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            478999999999999999998764

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.22  E-value=0.36  Score=44.10  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+..
T Consensus        38 ~~~i~G~nGsGKSTLl~~iaG~~   60 (257)
T PRK14246         38 IFGIMGPSGSGKSTLLKVLNRLI   60 (257)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998764

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=88.21  E-value=0.37  Score=44.45  Aligned_cols=24  Identities=25%  Similarity=0.238  Sum_probs=21.1

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+|+.++|||+|++.|++.+.
T Consensus        35 ~~~I~G~nGsGKSTLl~~l~Gl~~   58 (277)
T PRK13642         35 WVSIIGQNGSGKSTTARLIDGLFE   58 (277)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            689999999999999999987643

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=88.20  E-value=0.36  Score=42.48  Aligned_cols=21  Identities=33%  Similarity=0.373  Sum_probs=19.2

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|...+|||+|+|+|+..
T Consensus         2 i~iiG~~~~GKStL~~~Ll~~   22 (208)
T cd04166           2 FLTCGSVDDGKSTLIGRLLYD   22 (208)
T ss_pred             EEEEECCCCCHHHHHHHHHHH
Confidence            789999999999999999865

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=88.13  E-value=0.4  Score=43.62  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|++..
T Consensus        49 ~~~i~G~nGsGKSTLl~~l~Gl~   71 (257)
T cd03288          49 KVGICGRTGSGKSSLSLAFFRMV   71 (257)
T ss_pred             EEEEECCCCCCHHHHHHHHHccc
Confidence            78999999999999999998764

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=88.08  E-value=0.44  Score=42.82  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .++.|.|+.++|||+|++.+++.+.
T Consensus        44 ~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        44 GFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            3577899999999999999987753

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=88.06  E-value=0.38  Score=38.47  Aligned_cols=22  Identities=36%  Similarity=0.335  Sum_probs=19.2

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|+++|+..+|||+|+|++...
T Consensus         3 ~i~l~G~~~~GKstli~~l~~~   24 (157)
T cd04164           3 KVVIVGKPNVGKSSLLNALAGR   24 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3789999999999999999754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd04132 Rho4_like Rho4-like subfamily

Probab=87.95  E-value=0.42  Score=40.39  Aligned_cols=21  Identities=29%  Similarity=0.210  Sum_probs=18.9

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+..+|||.|+|++++.
T Consensus         3 i~vvG~~~vGKTsli~~l~~~   23 (187)
T cd04132           3 IVVVGDGGCGKTCLLIVYSQG   23 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999999754

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0410|consensus

Probab=87.95  E-value=0.32  Score=47.61  Aligned_cols=27  Identities=30%  Similarity=0.407  Sum_probs=24.6

Q ss_pred             CCceEEEEEEecccccChhHHHHHHHH
Q psy5031          52 KDKHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .+.+..||||+|...+|||+|+|+|-.
T Consensus       174 ~~~s~pviavVGYTNaGKsTLikaLT~  200 (410)
T KOG0410|consen  174 EGESSPVIAVVGYTNAGKSTLIKALTK  200 (410)
T ss_pred             ccCCCceEEEEeecCccHHHHHHHHHh
Confidence            367899999999999999999999974

>cd01870 RhoA_like RhoA-like subfamily

Probab=87.86  E-value=0.41  Score=39.72  Aligned_cols=21  Identities=24%  Similarity=0.260  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+..+|||.|+++++..
T Consensus         4 i~iiG~~~~GKTsl~~~~~~~   24 (175)
T cd01870           4 LVIVGDGACGKTCLLIVFSKD   24 (175)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            678899999999999999754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PRK04040 adenylate kinase; Provisional

Probab=87.85  E-value=0.49  Score=41.69  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=21.3

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+|..++|||++++.|.+.+
T Consensus         4 ~i~v~G~pG~GKtt~~~~l~~~l   26 (188)
T PRK04040          4 VVVVTGVPGVGKTTVLNKALEKL   26 (188)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHh
Confidence            78899999999999999998876

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=87.84  E-value=0.44  Score=40.10  Aligned_cols=24  Identities=25%  Similarity=0.214  Sum_probs=21.6

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ||.|+|..+||||+|+..|.+.+.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~   24 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLF   24 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999998864

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=87.84  E-value=0.42  Score=40.57  Aligned_cols=23  Identities=26%  Similarity=0.221  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ||-|+|+.+||||++...|...+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF   23 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            57899999999999999998864

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd04175 Rap1 Rap1 subgroup

Probab=87.84  E-value=0.44  Score=39.15  Aligned_cols=22  Identities=27%  Similarity=0.143  Sum_probs=18.9

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.++|...+|||+|+|+++..
T Consensus         3 ki~~~G~~~~GKTsli~~~~~~   24 (164)
T cd04175           3 KLVVLGSGGVGKSALTVQFVQG   24 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4678899999999999999743

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04125 RabA_like RabA-like subfamily

Probab=87.82  E-value=0.42  Score=40.68  Aligned_cols=21  Identities=33%  Similarity=0.417  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|+|+++..
T Consensus         3 i~v~G~~~vGKSsli~~~~~~   23 (188)
T cd04125           3 VVIIGDYGVGKSSLLKRFTED   23 (188)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            788999999999999999754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=87.80  E-value=0.4  Score=48.00  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|++.+
T Consensus        27 e~~~iiG~nGsGKSTLl~~l~Gl~   50 (520)
T TIGR03269        27 EVLGILGRSGAGKSVLMHVLRGMD   50 (520)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcc
Confidence            368899999999999999999864

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=87.73  E-value=0.43  Score=43.69  Aligned_cols=24  Identities=29%  Similarity=0.238  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+|++.|.+.+
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~   58 (261)
T PRK14263         35 EITGFIGPSGCGKSTVLRSLNRMN   58 (261)
T ss_pred             CEEEEECCCCCCHHHHHHHHHccc
Confidence            478899999999999999998764

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=87.73  E-value=0.37  Score=48.70  Aligned_cols=25  Identities=36%  Similarity=0.523  Sum_probs=21.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .|+|+|+.++|||+|+|.|+++...
T Consensus       357 ~vaiVG~sGsGKSTl~~LL~r~~~~  381 (567)
T COG1132         357 KVAIVGPSGSGKSTLIKLLLRLYDP  381 (567)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCC
Confidence            4558899999999999999998543

>PRK05541 adenylylsulfate kinase; Provisional

Probab=87.73  E-value=0.53  Score=40.01  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=22.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+|.++|+.++|||++++.|.+.+.
T Consensus         8 ~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          8 YVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3888999999999999999998875

>cd01889 SelB_euk SelB subfamily

Probab=87.73  E-value=0.42  Score=41.07  Aligned_cols=21  Identities=33%  Similarity=0.363  Sum_probs=19.1

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|...+|||+|+|+|.+.
T Consensus         3 i~i~G~~~~GKstLi~~l~~~   23 (192)
T cd01889           3 VGVLGHVDSGKTSLAKALSEI   23 (192)
T ss_pred             EEEEecCCCCHHHHHHHHHhc
Confidence            789999999999999999863

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=87.73  E-value=0.4  Score=44.64  Aligned_cols=25  Identities=32%  Similarity=0.394  Sum_probs=21.8

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -+++|+|+.++|||+|++.|++.+.
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~   58 (290)
T PRK13634         34 SYVAIIGHTGSGKSTLLQHLNGLLQ   58 (290)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3789999999999999999987643

>PRK10218 GTP-binding protein; Provisional

Probab=87.67  E-value=2.5  Score=44.05  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |--|+|+|...+|||+|+++|+..
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~   28 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQ   28 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHh
Confidence            556889999999999999999864

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=87.66  E-value=0.41  Score=45.78  Aligned_cols=24  Identities=29%  Similarity=0.212  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|++..
T Consensus       109 e~v~IvG~~GsGKSTLl~~L~g~~  132 (329)
T PRK14257        109 KVTAFIGPSGCGKSTFLRNLNQLN  132 (329)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            468899999999999999998764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=87.65  E-value=0.38  Score=47.73  Aligned_cols=25  Identities=28%  Similarity=0.145  Sum_probs=21.7

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+++|+|+.++|||+||+.|.+.+.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G~~~   54 (490)
T PRK10938         30 DSWAFVGANGSGKSALARALAGELP   54 (490)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCC
Confidence            4689999999999999999987653

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=87.65  E-value=0.38  Score=41.58  Aligned_cols=25  Identities=28%  Similarity=0.190  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .-|.|+|+.++|||+|+|+|.+...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~   30 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEF   30 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcC
Confidence            5677889999999999999987643

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=87.63  E-value=0.42  Score=44.85  Aligned_cols=23  Identities=35%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus        73 ~~~IvG~nGsGKSTLl~~L~Gl~   95 (305)
T PRK14264         73 VTALIGPSGCGKSTFLRCLNRMN   95 (305)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            78899999999999999998764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=87.57  E-value=1.9  Score=44.71  Aligned_cols=24  Identities=29%  Similarity=0.360  Sum_probs=19.9

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |-=|+|+|....|||+|+++|+..
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~   30 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIEL   30 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            334678899999999999999865

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=87.56  E-value=0.45  Score=44.35  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        32 ~~~IvG~nGsGKSTLl~~L~gl~   54 (275)
T cd03289          32 RVGLLGRTGSGKSTLLSAFLRLL   54 (275)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhc
Confidence            68899999999999999998875

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd04129 Rho2 Rho2 subfamily

Probab=87.52  E-value=0.45  Score=40.72  Aligned_cols=21  Identities=24%  Similarity=0.249  Sum_probs=18.5

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      -|+|+|+.++|||+|+|++..
T Consensus         3 Ki~ivG~~g~GKStLl~~l~~   23 (187)
T cd04129           3 KLVIVGDGACGKTSLLSVFTL   23 (187)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            468899999999999999974

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PLN03108 Rab family protein; Provisional

Probab=87.52  E-value=0.45  Score=41.84  Aligned_cols=23  Identities=26%  Similarity=0.148  Sum_probs=19.7

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .=|.|+|+.++|||+|+|+|+..
T Consensus         7 ~kivivG~~gvGKStLi~~l~~~   29 (210)
T PLN03108          7 FKYIIIGDTGVGKSCLLLQFTDK   29 (210)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            44678899999999999999754

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=87.50  E-value=0.43  Score=45.44  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|++.+
T Consensus        35 ~~~ivG~sGsGKSTLl~~i~Gl~   57 (330)
T PRK15093         35 IRGLVGESGSGKSLIAKAICGVT   57 (330)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            68999999999999999998764

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=87.46  E-value=0.54  Score=42.84  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=22.6

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ..|-|+|+.+||||++|+.+++++..
T Consensus       128 ~~ili~G~tGSGKTT~l~all~~i~~  153 (270)
T PF00437_consen  128 GNILISGPTGSGKTTLLNALLEEIPP  153 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred             eEEEEECCCccccchHHHHHhhhccc
Confidence            56778999999999999999998654

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=87.44  E-value=0.42  Score=45.54  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|++.+
T Consensus        34 e~~~lvG~sGsGKSTL~~~l~Gll   57 (326)
T PRK11022         34 EVVGIVGESGSGKSVSSLAIMGLI   57 (326)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            378999999999999999998865

>PRK00049 elongation factor Tu; Reviewed

Probab=87.43  E-value=1.8  Score=42.37  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=23.9

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+|..-|+|+|...+|||+|+++|+..
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~   35 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKV   35 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHh
Confidence            467778999999999999999999864

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=87.41  E-value=0.42  Score=44.15  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus        52 ~~~liG~NGsGKSTLlk~L~Gl~   74 (264)
T PRK13546         52 VIGLVGINGSGKSTLSNIIGGSL   74 (264)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68899999999999999998754

>cd01892 Miro2 Miro2 subfamily

Probab=87.40  E-value=0.61  Score=39.32  Aligned_cols=26  Identities=38%  Similarity=0.407  Sum_probs=22.8

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++.-|.++|..++|||.|+++++..
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~   27 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGR   27 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCC
Confidence            46888999999999999999999753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN03127 Elongation factor Tu; Provisional

Probab=87.40  E-value=2.7  Score=42.04  Aligned_cols=29  Identities=24%  Similarity=0.327  Sum_probs=25.2

Q ss_pred             CCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ..+|.--|+|+|-.-+|||+|+++|..+.
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~   85 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL   85 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHH
Confidence            36778889999999999999999997653

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=87.40  E-value=0.44  Score=44.67  Aligned_cols=44  Identities=27%  Similarity=0.342  Sum_probs=30.2

Q ss_pred             eEEeCH-HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          34 KFILDY-EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        34 ~l~ln~-eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+..+. .||+.|-..  +.. . .+++|+||.++|||+|+..++.-+.
T Consensus        11 ~v~y~~~~vl~~i~l~--v~~-G-~~~~iiGPNGaGKSTLlK~iLGll~   55 (254)
T COG1121          11 TVSYGNRPVLEDISLS--VEK-G-EITALIGPNGAGKSTLLKAILGLLK   55 (254)
T ss_pred             EEEECCEeeeeccEEE--EcC-C-cEEEEECCCCCCHHHHHHHHhCCCc
Confidence            444442 366654331  212 2 6899999999999999999998654

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=87.38  E-value=0.47  Score=40.82  Aligned_cols=23  Identities=35%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|+|.|.-++|||++++.|.+++
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~   23 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHL   23 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998874

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=87.32  E-value=0.46  Score=42.59  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|.+.+
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~   50 (237)
T TIGR00968        27 SLVALLGPSGSGKSTLLRIIAGLE   50 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998764

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=87.19  E-value=0.45  Score=44.53  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|++.+
T Consensus        64 e~~~liG~NGsGKSTLl~~I~Gl~   87 (282)
T cd03291          64 EMLAITGSTGSGKTSLLMLILGEL   87 (282)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998753

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=87.19  E-value=0.47  Score=44.06  Aligned_cols=45  Identities=29%  Similarity=0.232  Sum_probs=30.8

Q ss_pred             eEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          34 KFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        34 ~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ++-+.++-++.+..   ....+=.+|-|+|+.+||||++|+.+++++.
T Consensus        61 ~lg~~~~~~~~l~~---~~~~~~GlilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          61 KLGLKPENLEIFRK---LLEKPHGIILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             HcCCCHHHHHHHHH---HHhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence            34455555554432   1233446789999999999999999988753

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=87.18  E-value=0.43  Score=46.25  Aligned_cols=24  Identities=29%  Similarity=0.263  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|++.+
T Consensus        30 e~~~l~G~nGsGKSTLL~~iaGl~   53 (369)
T PRK11000         30 EFVVFVGPSGCGKSTLLRMIAGLE   53 (369)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            368999999999999999998764

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=87.18  E-value=0.39  Score=40.51  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=18.2

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.++|..++|||+|+|.|.+
T Consensus         4 i~~iG~~~~GKstl~~~l~~   23 (158)
T PRK15467          4 IAFVGAVGAGKTTLFNALQG   23 (158)
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            78899999999999999864

>cd01855 YqeH YqeH

Probab=87.14  E-value=0.5  Score=40.67  Aligned_cols=22  Identities=45%  Similarity=0.495  Sum_probs=19.4

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+.++|...+|||+|+|.|+..
T Consensus       129 ~~~~~G~~nvGKStliN~l~~~  150 (190)
T cd01855         129 DVYVVGATNVGKSTLINALLKK  150 (190)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHh
Confidence            4678899999999999999875

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=87.11  E-value=0.45  Score=43.93  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=21.3

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+|+.++|||+|++.|.+.+.
T Consensus        38 ~~~l~G~nGsGKSTLl~~l~Gl~~   61 (280)
T PRK13633         38 FLVILGRNGSGKSTIAKHMNALLI   61 (280)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            789999999999999999987643

>cd04177 RSR1 RSR1 subgroup

Probab=87.06  E-value=0.52  Score=39.19  Aligned_cols=21  Identities=33%  Similarity=0.259  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|+.++|||.|+|++.+.
T Consensus         4 i~liG~~~~GKTsli~~~~~~   24 (168)
T cd04177           4 IVVLGAGGVGKSALTVQFVQN   24 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            688999999999999999754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=87.04  E-value=0.48  Score=42.24  Aligned_cols=20  Identities=25%  Similarity=0.189  Sum_probs=19.0

Q ss_pred             EEEEecccccChhHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll   77 (281)
                      +++|+||.++|||+||..|.
T Consensus        25 ~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          25 HNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            88899999999999999997

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=87.01  E-value=0.46  Score=43.75  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|.+.+
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~   52 (275)
T PRK13639         30 MVALLGPNGAGKSTLFLHFNGIL   52 (275)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            88999999999999999998754

>KOG2655|consensus

Probab=86.99  E-value=1.6  Score=43.03  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=17.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +=|+|+.++|||+|+|-|...
T Consensus        24 lmvvG~sGlGKsTfiNsLf~~   44 (366)
T KOG2655|consen   24 LMVVGESGLGKSTFINSLFLT   44 (366)
T ss_pred             EEEecCCCccHHHHHHHHHhh
Confidence            457899999999999998644

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=86.86  E-value=0.52  Score=41.78  Aligned_cols=23  Identities=22%  Similarity=0.154  Sum_probs=20.7

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -++.|.||.++|||+||+.+...
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~   48 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVN   48 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHH
Confidence            58889999999999999999754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=86.85  E-value=0.46  Score=43.26  Aligned_cols=29  Identities=21%  Similarity=0.203  Sum_probs=24.8

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .|=-|++|+|..+||||+||+.|...+..
T Consensus        30 ~PGeVLgiVGESGSGKtTLL~~is~rl~p   58 (258)
T COG4107          30 YPGEVLGIVGESGSGKTTLLKCISGRLTP   58 (258)
T ss_pred             cCCcEEEEEecCCCcHHhHHHHHhcccCC
Confidence            35568999999999999999999877644

>cd04128 Spg1 Spg1p

Probab=86.85  E-value=2.2  Score=36.66  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.3

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..+.|||.|+++++..
T Consensus         3 i~vlG~~~vGKTsLi~~~~~~   23 (182)
T cd04128           3 IGLLGDAQIGKTSLMVKYVEG   23 (182)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999999754

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PRK14737 gmk guanylate kinase; Provisional

Probab=86.84  E-value=0.94  Score=39.82  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +|-|+||.++|||+|+++|+..
T Consensus         6 ~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          6 LFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5778999999999999999865

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=86.80  E-value=0.5  Score=45.50  Aligned_cols=24  Identities=21%  Similarity=0.337  Sum_probs=21.3

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -|-|+|+.+||||+|||.|++++.
T Consensus       162 nili~G~tgSGKTTll~aL~~~ip  185 (332)
T PRK13900        162 NIIISGGTSTGKTTFTNAALREIP  185 (332)
T ss_pred             cEEEECCCCCCHHHHHHHHHhhCC
Confidence            477899999999999999998854

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=86.79  E-value=0.48  Score=45.53  Aligned_cols=25  Identities=20%  Similarity=0.297  Sum_probs=21.7

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -+++|+|+.++|||+||+.|++.+.
T Consensus        24 ei~~l~G~nGsGKSTLl~~iaGl~~   48 (354)
T TIGR02142        24 GVTAIFGRSGSGKTTLIRLIAGLTR   48 (354)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3789999999999999999987643

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=86.75  E-value=0.53  Score=39.26  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|.+.+
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999997653

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=86.74  E-value=0.5  Score=43.78  Aligned_cols=24  Identities=29%  Similarity=0.356  Sum_probs=21.4

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+|+.++|||+|++.|.+.+.
T Consensus        34 ~~~i~G~nGaGKSTLl~~i~Gl~~   57 (283)
T PRK13636         34 VTAILGGNGAGKSTLFQNLNGILK   57 (283)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            789999999999999999987643

>smart00053 DYNc Dynamin, GTPase

Probab=86.74  E-value=0.44  Score=43.98  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .|+|+|++.+|||+|||.+++.
T Consensus        28 ~i~vvG~~~~GKSt~l~~i~g~   49 (240)
T smart00053       28 QIAVVGGQSAGKSSVLENFVGR   49 (240)
T ss_pred             eEEEEcCCCccHHHHHHHHhCC
Confidence            5889999999999999999875

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK14738 gmk guanylate kinase; Provisional

Probab=86.73  E-value=0.87  Score=40.33  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=19.4

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+|.|+||.++|||+|+++|...
T Consensus        14 ~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         14 LLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             eEEEEECcCCCCHHHHHHHHHhc
Confidence            45677999999999999999643

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=86.72  E-value=0.68  Score=39.71  Aligned_cols=25  Identities=16%  Similarity=0.267  Sum_probs=22.4

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +|+|.|+-++|||++++.|...+..
T Consensus         5 ~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         5 FIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999988754

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=86.69  E-value=0.54  Score=43.01  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=19.2

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|..++|||+|+|+|+..
T Consensus         2 i~ivG~~gsGKStL~~~Ll~~   22 (268)
T cd04170           2 IALVGHSGSGKTTLAEALLYA   22 (268)
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            689999999999999999865

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=86.67  E-value=2.3  Score=37.83  Aligned_cols=26  Identities=15%  Similarity=0.086  Sum_probs=21.0

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+-.-|.|+|...+|||+|+++++..
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~   36 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTG   36 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhC
Confidence            44556789999999999999998643

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=86.61  E-value=0.51  Score=44.17  Aligned_cols=26  Identities=23%  Similarity=0.226  Sum_probs=22.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+++|+|+.++|||+|++.|+.....
T Consensus        34 e~lgivGeSGsGKSTL~r~l~Gl~~p   59 (252)
T COG1124          34 ETLGIVGESGSGKSTLARLLAGLEKP   59 (252)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhcccCC
Confidence            57999999999999999999987544

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=86.60  E-value=0.5  Score=45.67  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+|+.++|||+||+.|++.+
T Consensus        29 e~~~llGpsGsGKSTLLr~IaGl~   52 (353)
T PRK10851         29 QMVALLGPSGSGKTTLLRIIAGLE   52 (353)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=86.59  E-value=0.51  Score=44.17  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++++|+.++|||+||+.|++-+
T Consensus        29 ei~~l~G~NGaGKTTLl~~l~Gl~   52 (301)
T TIGR03522        29 RIVGFLGPNGAGKSTTMKIITGYL   52 (301)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998754

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=86.58  E-value=0.47  Score=46.21  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+|+.++|||+||+.|++...
T Consensus        21 i~~l~G~sGsGKSTLLr~L~Gl~~   44 (363)
T TIGR01186        21 IFVIMGLSGSGKSTTVRMLNRLIE   44 (363)
T ss_pred             EEEEECCCCChHHHHHHHHhCCCC
Confidence            678999999999999999987653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=86.57  E-value=1  Score=48.21  Aligned_cols=21  Identities=24%  Similarity=0.379  Sum_probs=18.8

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .|+++|...+|||+|.|+|.+
T Consensus         5 ~IaLvG~pNvGKSTLfN~Ltg   25 (772)
T PRK09554          5 TIGLIGNPNSGKTTLFNQLTG   25 (772)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999953

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=86.46  E-value=0.54  Score=41.61  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.4

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++|+|+.++|||+||+.|..-
T Consensus        30 ~~~i~G~NGsGKSTll~~i~~~   51 (213)
T cd03279          30 LFLICGPTGAGKSTILDAITYA   51 (213)
T ss_pred             EEEEECCCCCCHHHHHHHheee
Confidence            7889999999999999998643

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=86.45  E-value=0.47  Score=47.37  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -+++|+|+.++|||+||+.|.+.+.
T Consensus        31 e~~~l~G~NGsGKSTLl~~l~G~~~   55 (501)
T PRK10762         31 RVMALVGENGAGKSTMMKVLTGIYT   55 (501)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4789999999999999999987653

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=86.45  E-value=0.34  Score=39.80  Aligned_cols=19  Identities=37%  Similarity=0.363  Sum_probs=16.9

Q ss_pred             EecccccChhHHHHHHHHh
Q psy5031          61 VAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        61 I~G~~RtGKSfLLN~Ll~~   79 (281)
                      ++|+.++|||+|+|+|...
T Consensus         1 iiG~~~~GKStll~~l~~~   19 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNA   19 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcC
Confidence            5799999999999999754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=86.44  E-value=0.44  Score=48.01  Aligned_cols=24  Identities=38%  Similarity=0.318  Sum_probs=20.6

Q ss_pred             EEEecccccChhHHHHHHHHhhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      |+|+|+...|||.|||.|+++-.+
T Consensus       220 vvIiG~PNvGKSSLLNaL~~~d~A  243 (454)
T COG0486         220 VVIIGRPNVGKSSLLNALLGRDRA  243 (454)
T ss_pred             EEEECCCCCcHHHHHHHHhcCCce
Confidence            468899999999999999987443

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=86.43  E-value=0.48  Score=47.36  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+|++.|.+.+
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~   55 (506)
T PRK13549         32 EIVSLCGENGAGKSTLMKVLSGVY   55 (506)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999998764

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=86.40  E-value=0.49  Score=44.19  Aligned_cols=24  Identities=25%  Similarity=0.189  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -|-+|+||.+||||+|.+.|....
T Consensus        31 EvhaiMGPNGsGKSTLa~~i~G~p   54 (251)
T COG0396          31 EVHAIMGPNGSGKSTLAYTIMGHP   54 (251)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999998764

>PRK00889 adenylylsulfate kinase; Provisional

Probab=86.37  E-value=0.75  Score=39.05  Aligned_cols=28  Identities=21%  Similarity=0.134  Sum_probs=24.0

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +-.+|.++|+.++|||+++..|.+.+..
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~   30 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLRE   30 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3458999999999999999999988743

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=86.28  E-value=0.51  Score=47.45  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+|+.++|||+||+.|++.+.
T Consensus        37 ~~~iiG~nGsGKSTLl~~i~G~~~   60 (529)
T PRK15134         37 TLALVGESGSGKSVTALSILRLLP   60 (529)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            688999999999999999987653

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=86.25  E-value=0.5  Score=47.91  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=20.6

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ..++|+|+.++|||+|++.|++..
T Consensus       377 ~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        377 QRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            456788999999999999998864

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=86.25  E-value=0.8  Score=40.01  Aligned_cols=43  Identities=21%  Similarity=0.078  Sum_probs=29.9

Q ss_pred             eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -|..+++.+..-  .....-..|-++|+.+||||+|+..+.++..
T Consensus        21 ~~~~~~~~l~~~--~~~~~~~~lll~G~~G~GKT~la~~~~~~~~   63 (226)
T TIGR03420        21 GNAELLAALRQL--AAGKGDRFLYLWGESGSGKSHLLQAACAAAE   63 (226)
T ss_pred             CcHHHHHHHHHH--HhcCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            355677665442  1123345677899999999999999988754

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=86.23  E-value=0.53  Score=45.27  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus        26 ~~~l~G~nGsGKSTLl~~iaGl~   48 (352)
T PRK11144         26 ITAIFGRSGAGKTSLINAISGLT   48 (352)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998764

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=86.22  E-value=0.68  Score=40.91  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +|+|+|+.+||||++.++|...
T Consensus         3 ~i~itG~~gsGKst~~~~l~~~   24 (195)
T PRK14730          3 RIGLTGGIASGKSTVGNYLAQQ   24 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5999999999999999999875

>cd04158 ARD1 ARD1 subfamily

Probab=86.13  E-value=0.55  Score=39.33  Aligned_cols=20  Identities=30%  Similarity=0.205  Sum_probs=17.8

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.++|+.++|||.|+|+|..
T Consensus         2 vvlvG~~~~GKTsl~~~l~~   21 (169)
T cd04158           2 VVTLGLDGAGKTTILFKLKQ   21 (169)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            56899999999999999964

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01893 Miro1 Miro1 subfamily

Probab=86.12  E-value=0.63  Score=38.66  Aligned_cols=21  Identities=29%  Similarity=0.254  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|...+|||.|+|++...
T Consensus         3 v~ivG~~~vGKTsl~~~l~~~   23 (166)
T cd01893           3 IVLIGDEGVGKSSLIMSLVSE   23 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999999764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=86.11  E-value=0.56  Score=40.42  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +|+|.|..++|||++++.|..
T Consensus         1 ii~itG~~gsGKst~~~~l~~   21 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE   21 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=86.06  E-value=0.72  Score=40.13  Aligned_cols=28  Identities=21%  Similarity=0.140  Sum_probs=25.5

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|++++=.+||.++||++|+..|.+++.
T Consensus         1 ~p~~~~ll~GpsGvGKT~la~~la~~l~   28 (171)
T PF07724_consen    1 RPKSNFLLAGPSGVGKTELAKALAELLF   28 (171)
T ss_dssp             S-SEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5889999999999999999999999987

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=86.05  E-value=0.53  Score=47.25  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=21.7

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+++|+|+.++|||+||+.|.+.+.
T Consensus        38 e~~~liG~NGsGKSTLl~~l~Gl~~   62 (510)
T PRK15439         38 EVHALLGGNGAGKSTLMKIIAGIVP   62 (510)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4689999999999999999987643

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=86.02  E-value=0.5  Score=48.83  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -+++|+|+.++|||+||+.|++.+.
T Consensus        43 e~~~lvG~nGsGKSTLl~~l~Gll~   67 (623)
T PRK10261         43 ETLAIVGESGSGKSVTALALMRLLE   67 (623)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            4789999999999999999998754

>PRK08356 hypothetical protein; Provisional

Probab=86.01  E-value=0.62  Score=40.65  Aligned_cols=21  Identities=29%  Similarity=0.531  Sum_probs=19.1

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +|.|+|+.++|||++.++|..
T Consensus         7 ~i~~~G~~gsGK~t~a~~l~~   27 (195)
T PRK08356          7 IVGVVGKIAAGKTTVAKFFEE   27 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999953

>TIGR00750 lao LAO/AO transport system ATPase

Probab=85.97  E-value=1.1  Score=42.14  Aligned_cols=30  Identities=27%  Similarity=0.213  Sum_probs=25.6

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ..+--+|.|+|+.++|||+|++.+...+..
T Consensus        31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~   60 (300)
T TIGR00750        31 TGNAHRVGITGTPGAGKSTLLEALGMELRR   60 (300)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            456788899999999999999999987643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=85.91  E-value=0.64  Score=42.10  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=21.7

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+++|+|+.++|||.||..|..-+.
T Consensus        26 ~~~~IvG~NGsGKStll~Ai~~ll~   50 (251)
T cd03273          26 QFNAITGLNGSGKSNILDAICFVLG   50 (251)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4788999999999999999976653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=85.87  E-value=0.52  Score=46.89  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|.+.+
T Consensus        28 e~~~liG~nGsGKSTLl~~i~G~~   51 (500)
T TIGR02633        28 ECVGLCGENGAGKSTLMKILSGVY   51 (500)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378899999999999999998754

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=85.78  E-value=0.53  Score=47.04  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.|++.+
T Consensus       290 ~~~l~G~NGsGKSTLlk~i~Gl~  312 (506)
T PRK13549        290 ILGIAGLVGAGRTELVQCLFGAY  312 (506)
T ss_pred             EEEEeCCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
3qnu_A	459	Crystal Structure Of The Cytosolic Domain Of Human		1e-54
4idq_A	447	Human Atlastin-1 1-446, N440t, Gdpalf4- Length = 44		1e-54
3q5e_A	447	Crystal Structure Of Human Atlastin-1 (Residues 1-4		1e-54
4idn_A	457	Human Atlastin-1 1-446, C-his6, Gppnhp Length = 457		1e-54
3q5d_A	447	Crystal Structure Of Human Atlastin-1 (Residues 1-4		1e-51
4idp_A	447	Human Atlastin-1 1-446, N440t, Gppnhp Length = 447		1e-51

>pdb|3QNU|A Chain A, Crystal Structure Of The Cytosolic Domain Of Human Atlastin-1 In Complex With Gdp, Hexagonal Form Length = 459

Iteration: 1
 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 122/146 (83%), Gaps = 5/146 (3%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct: 87  AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 141
Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 142 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 201
Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct: 202 LQLFTEYGRLAMEETFLKPFQSLIFL 227

>pdb|4IDQ|A Chain A, Human Atlastin-1 1-446, N440t, Gdpalf4- Length = 447

Iteration: 1
 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 122/146 (83%), Gaps = 5/146 (3%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct: 76  AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 130
Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 131 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 190
Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct: 191 LQLFTEYGRLAMEETFLKPFQSLIFL 216

>pdb|3Q5E|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447) Bound To Gdp, Crystal Form 2 Length = 447

Iteration: 1
 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 122/146 (83%), Gaps = 5/146 (3%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75  AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129
Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189
Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

>pdb|4IDN|A Chain A, Human Atlastin-1 1-446, C-his6, Gppnhp Length = 457

Iteration: 1
 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 122/146 (83%), Gaps = 5/146 (3%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFL+DF+LRYM   Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75  AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129
Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189
Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

>pdb|3Q5D|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447) Bound To Gdp, Crystal Form 1 Length = 447

Iteration: 1
 Score =  199 bits (506), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/146 (68%), Positives = 116/146 (79%), Gaps = 5/146 (3%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFL DF LRY    Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75  AFRKGKSFLXDFXLRYX---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129
Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++   P G+K AV+L DTQGTFDS+ST+RD ATVFALST +SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLXDTQGTFDSQSTLRDSATVFALSTXISSIQVYNLSQNVQEDDLQH 189
Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLA  +T  KPFQ L FL
Sbjct: 190 LQLFTEYGRLAXEETFLKPFQSLIFL 215

>pdb|4IDP|A Chain A, Human Atlastin-1 1-446, N440t, Gppnhp Length = 447

Iteration: 1
 Score =  199 bits (506), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/146 (68%), Positives = 116/146 (79%), Gaps = 5/146 (3%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFL DF LRY    Y +E  S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct: 76  AFRKGKSFLXDFXLRYX---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 130
Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++   P G+K AV+L DTQGTFDS+ST+RD ATVFALST +SSIQ+YNLSQN+QEDDLQH
Sbjct: 131 FLINKPDGKKVAVLLXDTQGTFDSQSTLRDSATVFALSTXISSIQVYNLSQNVQEDDLQH 190
Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLA  +T  KPFQ L FL
Sbjct: 191 LQLFTEYGRLAXEETFLKPFQSLIFL 216

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	9e-36
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	6e-29
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	4e-25
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	3e-15

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* Length = 447

 Score =  132 bits (331), Expect = 9e-36
 Identities = 100/146 (68%), Positives = 119/146 (81%), Gaps = 5/146 (3%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
           AFRKGKSFL+DF+LRYM         S DW+G  + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75  AFRKGKSFLMDFMLRYMY-----NQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129

Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
           ++   P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189

Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
           LQLFTEYGRLA+ +T  KPFQ L FL
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFL 215

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* Length = 447

 Score =  113 bits (283), Expect = 6e-29
 Identities = 65/124 (52%), Positives = 86/124 (69%), Gaps = 5/124 (4%)

Query: 14  EEDSLPQYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLL 73
           EE+ + + G +Q++  ++ H F LD  AL RILL + V+DK VV VSVAGAFRKGKSFL+
Sbjct: 25  EEEPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLM 84

Query: 74  DFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK 133
           DF+LRYM         S DW+G  + PL GFSWRGGSER+TTGI +WS +++   P G+K
Sbjct: 85  DFMLRYMY-----NQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKK 139

Query: 134 VSAF 137
           V+  
Sbjct: 140 VAVL 143

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score =  103 bits (257), Expect = 4e-25
 Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 26/144 (18%)

Query: 134 VSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWS 193
           V  +R GKS+L++ L                          GFS     +  T GI MW 
Sbjct: 44  VGLYRTGKSYLMNKLAGKKK---------------------GFSLGSTVQSHTKGIWMWC 82

Query: 194 HVYIATLPTGEKAAVILLDTQGTFDSE-STVRDCATVFALSTMLSSIQIYNLSQNIQEDD 252
                  P      ++LLDT+G  D E    ++ + +FAL+ +LSS  +YN    I +  
Sbjct: 83  V----PHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQA 138

Query: 253 LQHLQLFTEYGRLALADTGTKPFQ 276
           +  L   TE      + +     +
Sbjct: 139 MDQLYYVTELTHRIRSKSSPDENE 162

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 74.2 bits (181), Expect = 3e-15
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 26/104 (25%)

Query: 18  LPQYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLL 77
           +   G + ++      + + + EAL+ +        + +VVV++ G +R GKS+L++ L 
Sbjct: 5   IHMTGPMCLI-ENTNGRLMANPEALKIL----SAITQPMVVVAIVGLYRTGKSYLMNKLA 59

Query: 78  RYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWS 121
                                    GFS     +  T GI MW 
Sbjct: 60  GKKK---------------------GFSLGSTVQSHTKGIWMWC 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	100.0
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	100.0
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.93
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	98.09
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.27
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.22
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.0
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.88
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.64
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.22
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.19
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.09
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.07
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.05
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.01
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.98
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.95
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.93
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.84
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.79
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.74
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.69
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.66
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.63
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.58
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.57
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.53
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.49
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.43
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.41
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.37
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.37
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.34
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.32
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.32
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.25
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.21
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.18
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.14
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.12
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.1
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.04
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.01
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.88
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.85
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.85
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.74
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.71
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	94.66
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.63
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.63
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.59
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	94.56
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	94.39
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.36
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.07
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.99
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	93.84
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	93.79
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	93.77
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	93.77
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	93.71
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	93.7
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	93.68
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	93.62
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	93.54
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	93.52
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	93.46
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	93.45
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	93.39
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	93.38
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.36
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.28
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.25
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	93.25
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.13
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.08
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.07
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	93.04
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.04
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	93.03
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.01
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	92.96
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	92.94
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	92.93
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	92.92
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	92.91
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	92.87
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	92.86
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.86
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.85
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	92.82
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.82
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	92.73
2wji_A	165	Ferrous iron transport protein B homolog; membrane	92.71
4a74_A	231	DNA repair and recombination protein RADA; hydrola	92.71
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	92.69
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	92.65
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	92.63
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.63
1g6h_A	257	High-affinity branched-chain amino acid transport	92.61
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	92.6
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	92.58
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	92.55
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	92.55
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.53
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	92.53
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	92.52
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	92.44
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	92.42
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	92.38
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.37
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	92.36
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	92.34
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	92.33
1b0u_A	262	Histidine permease; ABC transporter, transport pro	92.31
1ji0_A	240	ABC transporter; ATP binding protein, structural g	92.27
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	92.26
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.24
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	92.23
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.23
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	92.22
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	92.21
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	92.21
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	92.2
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	92.19
2hf9_A	226	Probable hydrogenase nickel incorporation protein	92.18
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	92.18
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.17
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	92.15
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.13
1sgw_A	214	Putative ABC transporter; structural genomics, P p	92.11
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	92.06
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	92.03
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	92.01
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	91.98
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	91.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	91.94
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	91.86
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	91.85
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	91.84
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	91.83
2ghi_A	260	Transport protein; multidrug resistance protein, M	91.81
2ged_A	193	SR-beta, signal recognition particle receptor beta	91.8
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	91.74
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	91.73
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	91.73
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	91.72
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	91.72
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	91.66
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	91.63
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	91.61
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	91.61
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	91.58
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.56
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	91.54
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	91.53
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	91.49
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	91.46
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	91.45
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	91.44
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.43
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	91.42
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	91.39
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	91.37
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	91.33
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	91.33
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	91.27
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.23
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.19
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	91.19
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	91.14
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	91.02
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	90.99
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	90.97
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	90.95
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	90.9
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	90.89
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	90.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	90.8
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	90.79
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	90.78
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	90.74
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	90.73
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	90.69
1p9r_A	418	General secretion pathway protein E; bacterial typ	90.66
2ewv_A	372	Twitching motility protein PILT; pilus retraction	90.62
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	90.62
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	90.61
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	90.6
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	90.53
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	90.48
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	90.45
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	90.38
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	90.37
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	90.37
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	90.33
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	90.31
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	90.31
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	90.3
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	90.25
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	90.25
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	90.19
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	90.19
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	90.18
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	90.18
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	90.16
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	90.12
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	90.11
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	90.1
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	90.07
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	90.03
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	90.03
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	90.01
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	89.93
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	89.93
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	89.9
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	89.9
1nrj_B	218	SR-beta, signal recognition particle receptor beta	89.89
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	89.85
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	89.83
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	89.79
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	89.77
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	89.75
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	89.71
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	89.7
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	89.49
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	89.47
1via_A	175	Shikimate kinase; structural genomics, transferase	89.46
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	89.46
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	89.45
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	89.41
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	89.39
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	89.36
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	89.35
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	89.34
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	89.33
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	89.31
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	89.28
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	89.27
2fh5_B	214	SR-beta, signal recognition particle receptor beta	89.26
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	89.25
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	89.16
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	89.16
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	89.04
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	89.03
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	89.03
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	89.02
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	89.01
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	89.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	88.98
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	88.97
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	88.95
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	88.95
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	88.94
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	88.9
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	88.87
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	88.86
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	88.8
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	88.72
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	88.58
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	88.49
2og2_A	359	Putative signal recognition particle receptor; nuc	88.48
2cvh_A	220	DNA repair and recombination protein RADB; filamen	88.48
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	88.47
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	88.42
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	88.4
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	88.34
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	88.32
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	88.21
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	88.21
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	88.14
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	88.04
3bos_A	242	Putative DNA replication factor; P-loop containing	88.03
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	87.9
2chg_A	226	Replication factor C small subunit; DNA-binding pr	87.9
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	87.89
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	87.88
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	87.87
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	87.85
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	87.82
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	87.82
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	87.81
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	87.8
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	87.8
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	87.79
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	87.78
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	87.72
2vli_A	183	Antibiotic resistance protein; transferase, tunica	87.72
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	87.67
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	87.62
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	87.55
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	87.52
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	87.52
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	87.49
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	87.42
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	87.37
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	87.25
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	87.22
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	87.19
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	87.17
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	87.16
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	87.08
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	87.07
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	87.04
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	87.04
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	87.02
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	87.02
3kta_A	182	Chromosome segregation protein SMC; structural mai	86.99
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	86.98
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	86.96
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	86.82
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	86.78
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	86.78
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	86.77
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	86.75
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	86.74
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	86.72
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	86.71
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	86.7
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	86.66
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	86.63
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	86.54
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	86.51
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	86.46
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	86.37
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	86.34
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	86.21
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	86.18
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	86.1
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	86.09
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	85.91
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	85.88
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	85.73
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	85.67
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	85.65
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	85.65
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	85.51
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	85.36
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	85.27
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	85.26
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	85.16
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	85.11
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	85.1
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	84.89
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	85.12
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	84.8
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	84.74
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	84.74
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	84.72
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	84.71
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	84.68
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	84.68
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	84.48
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	84.48
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	84.47
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	84.43
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	84.4
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	84.31
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	84.29
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	84.1
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	84.08
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	84.04
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	83.85
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	83.83
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	83.66
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	83.61
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	83.49
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	83.46
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	83.39
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	83.36
2fna_A	357	Conserved hypothetical protein; structural genomic	83.2
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	83.05
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	82.99
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	82.93
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	82.92
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	82.86
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	82.83
1wxq_A	397	GTP-binding protein; structural genomics, riken st	82.8
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	82.72
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	82.68
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	82.59
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	82.57
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	82.55
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	82.5
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	82.31
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	82.25
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	82.18
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	82.11
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	81.95
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	81.88
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	81.83
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	81.82
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	81.6
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	81.4
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	81.31
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	81.23
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	81.19
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	81.11
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	81.08
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	80.35
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	80.26
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	80.22
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	80.1
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	80.02

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=100.00  E-value=7.5e-51  Score=398.49  Aligned_cols=190  Identities=65%  Similarity=1.036  Sum_probs=172.2

Q ss_pred             cccCCCCCeeEEEEeCCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCC
Q psy5031          15 EDSLPQYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWM   94 (281)
Q Consensus        15 ~~~~~~~~pvqLV~~~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~   94 (281)
                      ++...+++|+|||+++++++|.||+|||+.||+++.++++||+||||+|++|||||||||+|++++.+.           
T Consensus        26 ~~~~~~~~pvqlV~~~~~~~l~ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~-----------   94 (457)
T 4ido_A           26 EEPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQ-----------   94 (457)
T ss_dssp             -----CCCEEEEEEECTTSCEEECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHHHHCT-----------
T ss_pred             ccccCCCCceeEEEECCCCCEEECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHHhhcc-----------
Confidence            445778999999999888999999999999887666678999999999999999999999999986542           


Q ss_pred             CCCCCCCCCcccCCCCcccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCC
Q psy5031          95 GPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLE  174 (281)
Q Consensus        95 ~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (281)
                                                                                        +..+|+++.+.+..
T Consensus        95 ------------------------------------------------------------------~~~~w~~~~~~~~~  108 (457)
T 4ido_A           95 ------------------------------------------------------------------ESVDWVGDYNEPLT  108 (457)
T ss_dssp             ------------------------------------------------------------------TCTTTTCCTTCCCC
T ss_pred             ------------------------------------------------------------------cccccccccccCCC
Confidence                                                                              12467777777789


Q ss_pred             CcccCCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCCCCcCcccchhhHHHHHhhhhhhhhccCCCCChhhhh
Q psy5031         175 GFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQ  254 (281)
Q Consensus       175 gF~~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~  254 (281)
                      ||+|++++++||+|||||++|+.+..++|++++|+||||||++|.+++.++|++||+|++||||++|||++++|++++|+
T Consensus       109 gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~  188 (457)
T 4ido_A          109 GFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQ  188 (457)
T ss_dssp             SSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHH
T ss_pred             CceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHH
Confidence            99999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhccCCCCCcccccC
Q psy5031         255 HLQLFTEYGRLALADTGTKPFQRLQFL  281 (281)
Q Consensus       255 ~L~l~t~~a~~i~~~~~~~pfq~L~fl  281 (281)
                      +|++|++||++|+++....|||+|.||
T Consensus       189 ~L~~~tel~~~i~~~~~~~~Fp~f~wl  215 (457)
T 4ido_A          189 HLQLFTEYGRLAMEETFLKPFQSLIFL  215 (457)
T ss_dssp             HHHHHHHHHHHHSCCCSSCSEEEEEEE
T ss_pred             HHHHHHHHHHHHhhhcccccCCceEEE
Confidence            999999999999999999999999875

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=100.00  E-value=4.2e-46  Score=364.21  Aligned_cols=189  Identities=65%  Similarity=1.035  Sum_probs=173.0

Q ss_pred             ccCCCCCeeEEEEeCCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCC
Q psy5031          16 DSLPQYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMG   95 (281)
Q Consensus        16 ~~~~~~~pvqLV~~~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~   95 (281)
                      +....++|+|||.++++|+|++|+|||+.||.++.+.++||+||||+|++|+|||||||+|++++++.            
T Consensus        27 ~~~~~~~piqlv~~~~~~~l~v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~~~~~------------   94 (447)
T 3q5d_A           27 EPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQ------------   94 (447)
T ss_dssp             --CCCCCEEEEEEECTTSCEEECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHHHHCC------------
T ss_pred             ccccCCCceeEEEECCCCCEEECHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhhcccc------------
Confidence            45668999999999889999999999988888666679999999999999999999999999986541            


Q ss_pred             CCCCCCCCcccCCCCcccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCC
Q psy5031          96 PDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEG  175 (281)
Q Consensus        96 ~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~g  175 (281)
                                                                                       +..+|++++.....+
T Consensus        95 -----------------------------------------------------------------~~~~wl~~~~~~~~~  109 (447)
T 3q5d_A           95 -----------------------------------------------------------------ESVDWVGDYNEPLTG  109 (447)
T ss_dssp             -----------------------------------------------------------------STTTSSCCTTSBCCS
T ss_pred             -----------------------------------------------------------------cccccccccccccce
Confidence                                                                             235677776677899


Q ss_pred             cccCCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCCCCcCcccchhhHHHHHhhhhhhhhccCCCCChhhhhH
Q psy5031         176 FSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH  255 (281)
Q Consensus       176 F~~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~~  255 (281)
                      |+|++++++||+|||||++|+.+..++|++++|+||||||+.+.+++.++|++||+|++||||++|||+++.|+++++++
T Consensus       110 f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~~~~~~~~~d~~ifal~~lLSs~~IyN~~~~i~~~~l~~  189 (447)
T 3q5d_A          110 FSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH  189 (447)
T ss_dssp             SCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEEEEESSSCCHHHHHH
T ss_pred             ecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCCcccccccchhhhHHHHHHHHHHhhHHHHhhcccccHHHHHH
Confidence            99999999999999999999999989999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhccCCCCCcccccC
Q psy5031         256 LQLFTEYGRLALADTGTKPFQRLQFL  281 (281)
Q Consensus       256 L~l~t~~a~~i~~~~~~~pfq~L~fl  281 (281)
                      |++|++++++++++...+|||+|.||
T Consensus       190 L~~~~e~~~~~~~~~~~~~fp~l~wv  215 (447)
T 3q5d_A          190 LQLFTEYGRLAMEETFLKPFQSLIFL  215 (447)
T ss_dssp             HHHHHHHHHHTSCCCSSCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHhhcccCCCceEEE
Confidence            99999999999888889999999985

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.93  E-value=3.8e-26  Score=229.92  Aligned_cols=161  Identities=26%  Similarity=0.400  Sum_probs=135.6

Q ss_pred             CCCCeeEEEEeCCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCC
Q psy5031          19 PQYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDD   98 (281)
Q Consensus        19 ~~~~pvqLV~~~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~   98 (281)
                      .-++|++||..+ ++.|.+|++|++.+..    .+.|+.+|+|+|++++|||+|+|+|++.                   
T Consensus         6 ~m~~pv~li~~~-~~~l~~~~eal~~L~~----i~~~~~~VaivG~pnvGKStLiN~L~g~-------------------   61 (592)
T 1f5n_A            6 HMTGPMCLIENT-NGRLMANPEALKILSA----ITQPMVVVAIVGLYRTGKSYLMNKLAGK-------------------   61 (592)
T ss_dssp             -CCSCEEEEEEE-TTEEEECHHHHHHHHT----CCSBEEEEEEEEBTTSSHHHHHHHHTTC-------------------
T ss_pred             CCCCCeEEEEeC-CCcEEECHHHHHHHHh----ccCCCcEEEEECCCCCCHHHHHHhHcCC-------------------
Confidence            357899999976 7999999999995442    3789999999999999999999999421                   


Q ss_pred             CCCCCcccCCCCcccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCccc
Q psy5031          99 VPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSW  178 (281)
Q Consensus        99 ~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~  178 (281)
                                                                                                ..+|.+
T Consensus        62 --------------------------------------------------------------------------~~~~~~   67 (592)
T 1f5n_A           62 --------------------------------------------------------------------------KKGFSL   67 (592)
T ss_dssp             --------------------------------------------------------------------------SSCSCC
T ss_pred             --------------------------------------------------------------------------CCcccc
Confidence                                                                                      134677


Q ss_pred             CCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCCCCc-CcccchhhHHHHHhhhhhhhhccCCCCChhhhhHhH
Q psy5031         179 RGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES-TVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQ  257 (281)
Q Consensus       179 ~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~-s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~~L~  257 (281)
                      ++++.+||+|||+|+.|+.    .+....++|+||+|+.+... +..+++.+|+|++++||++|||+.+.|++++++.|+
T Consensus        68 ~~tt~~~T~gi~~~~~~~~----~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~  143 (592)
T 1f5n_A           68 GSTVQSHTKGIWMWCVPHP----KKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLY  143 (592)
T ss_dssp             CCSSSCCCCSEEEEEEECS----SSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTH
T ss_pred             CCCCCCceeEEEEeecccc----cCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHH
Confidence            7888899999999998873    33456799999999998876 667899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccC--------------CCCCcccccC
Q psy5031         258 LFTEYGRLALADTG--------------TKPFQRLQFL  281 (281)
Q Consensus       258 l~t~~a~~i~~~~~--------------~~pfq~L~fl  281 (281)
                      +++++++.+....+              ..+|++|.||
T Consensus       144 ~v~e~~~~l~~k~~~~~~~~~~~~~~~~~~~fP~~~wv  181 (592)
T 1f5n_A          144 YVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWT  181 (592)
T ss_dssp             HHHTHHHHCBSCCC-------CCGGGGHHHHCCEEEEE
T ss_pred             HHHHHhhhhhcccCcccccccccchhhhhccCCceEEE
Confidence            99999998865433              2468998875

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=98.09  E-value=2.1e-06  Score=84.23  Aligned_cols=42  Identities=57%  Similarity=1.244  Sum_probs=36.5

Q ss_pred             CCCCCCCCCCCCcccCCCCcccccceeeeeceEEeecCCccc
Q psy5031          92 DWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK  133 (281)
Q Consensus        92 ~~~~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~  133 (281)
                      +|.+..+.+..+|+|+++++|||+|||||++|+.++.++|+.
T Consensus        98 ~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~  139 (457)
T 4ido_A           98 DWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKK  139 (457)
T ss_dssp             TTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCE
T ss_pred             ccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCe
Confidence            477666677899999999999999999999999998888763

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.27  E-value=0.00017  Score=70.42  Aligned_cols=41  Identities=56%  Similarity=1.249  Sum_probs=35.0

Q ss_pred             CCCCCCCCCCCCcccCCCCcccccceeeeeceEEeecCCcc
Q psy5031          92 DWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGE  132 (281)
Q Consensus        92 ~~~~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~  132 (281)
                      +|.+....+..+|+|+++++++|+|||||+.|+.++.++|+
T Consensus        98 ~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~  138 (447)
T 3q5d_A           98 DWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGK  138 (447)
T ss_dssp             TSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSC
T ss_pred             ccccccccccceecCCCCCCCceeEEEEecCccccccCCCC
Confidence            46666555788999999999999999999999888877776

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.00  E-value=0.0032  Score=54.90  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=21.1

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|+|+|..++|||+|+|+|+.+
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            4456889999999999999999754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.90  E-value=0.0047  Score=56.24  Aligned_cols=27  Identities=37%  Similarity=0.363  Sum_probs=24.1

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|-..|+|+|...+|||+|+|+|+..
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            458899999999999999999999743

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.88  E-value=0.0037  Score=53.94  Aligned_cols=26  Identities=19%  Similarity=0.167  Sum_probs=21.6

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+.--|+++|+.++|||+|+|.|++.
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC
Confidence            34567899999999999999999754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.64  E-value=0.0058  Score=51.18  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=19.5

Q ss_pred             EEEEEEecccccChhHHHHHHHH
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .-.|.|+|..++|||+|+|+|++
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~   51 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCN   51 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhC
Confidence            44677899999999999999964

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.22  E-value=0.013  Score=53.48  Aligned_cols=25  Identities=36%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +...|+|+|...+|||+|+|+|++.
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.19  E-value=0.013  Score=46.02  Aligned_cols=22  Identities=18%  Similarity=0.161  Sum_probs=19.3

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|+.++|||+|+|+|+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4788999999999999999754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.09  E-value=0.0078  Score=53.43  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=18.4

Q ss_pred             EEEEEecccccChhHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll   77 (281)
                      .-|+|+|..++|||+|+|.|+
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~   29 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLF   29 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            447799999999999999985

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.07  E-value=0.021  Score=46.07  Aligned_cols=23  Identities=35%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|+.++|||+|+|+|+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45778899999999999999754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.05  E-value=0.015  Score=46.20  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=19.8

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|+.++|||+|+|+|+..
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45788899999999999999743

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.01  E-value=0.019  Score=45.20  Aligned_cols=25  Identities=20%  Similarity=0.163  Sum_probs=21.0

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|+.++|||+|+|+|+..
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3456889999999999999999754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.00  E-value=0.024  Score=45.09  Aligned_cols=27  Identities=22%  Similarity=0.204  Sum_probs=22.6

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+..-|.|+|+.++|||+|+|+|+..
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcC
Confidence            345667899999999999999999754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.98  E-value=0.014  Score=45.91  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=19.8

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|+.++|||+|+|+|+..
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            44679999999999999999754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.95  E-value=0.023  Score=46.65  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=22.2

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+..-|.|+|+.++|||+|+|+|++.
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            45677899999999999999999764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.93  E-value=0.02  Score=44.87  Aligned_cols=25  Identities=20%  Similarity=0.119  Sum_probs=21.0

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|+.++|||+|+|+|+..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3456789999999999999999754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.93  E-value=0.019  Score=45.37  Aligned_cols=25  Identities=20%  Similarity=0.006  Sum_probs=21.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|+.++|||+|+|+|+..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3456889999999999999999754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.91  E-value=0.03  Score=44.64  Aligned_cols=26  Identities=23%  Similarity=0.126  Sum_probs=22.0

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+..-|.|+|+.++|||+|+|+|+..
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            45566899999999999999999754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.84  E-value=0.016  Score=52.55  Aligned_cols=26  Identities=31%  Similarity=0.321  Sum_probs=22.7

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+-.+|+|+|+..+|||+|+|+|+..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34568999999999999999999864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.79  E-value=0.042  Score=46.67  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=19.9

Q ss_pred             EEEEEEecccccChhHHHHHHHH
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      ..-|.|+|+.++|||+|+|+|++
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45678999999999999999964

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.74  E-value=0.026  Score=46.07  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=22.3

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+..-|.|+|+.++|||+|+|+|+..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            45667899999999999999999754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.69  E-value=0.029  Score=43.74  Aligned_cols=22  Identities=32%  Similarity=0.141  Sum_probs=19.3

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|+.++|||+|+|+|+..
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.66  E-value=0.025  Score=45.47  Aligned_cols=23  Identities=22%  Similarity=0.117  Sum_probs=20.2

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|+.++|||+|+|+|+..
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45779999999999999999865

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.63  E-value=0.035  Score=43.99  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=22.2

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+..-|.|+|+.++|||+|+|+|+..
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            35667889999999999999999754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.58  E-value=0.042  Score=45.43  Aligned_cols=26  Identities=31%  Similarity=0.270  Sum_probs=23.0

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .....|+|+|+.++|||+|+|+|.+.
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            35678999999999999999999765

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.57  E-value=0.034  Score=45.31  Aligned_cols=27  Identities=19%  Similarity=0.138  Sum_probs=21.8

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+..-|.|+|+.++|||+|+|+|+..
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcC
Confidence            345667899999999999999999754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.53  E-value=0.034  Score=44.92  Aligned_cols=25  Identities=24%  Similarity=0.159  Sum_probs=21.4

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|+.++|||.|+|+|+..
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4567889999999999999999754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.49  E-value=0.041  Score=48.54  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=22.3

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +.+-.-|.++|..++|||+|+|.|+..
T Consensus        36 ~~~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           36 DVNSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            344567889999999999999999743

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.43  E-value=0.055  Score=43.86  Aligned_cols=26  Identities=23%  Similarity=0.126  Sum_probs=22.5

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+..-|.|+|+.++|||+|+|+|++.
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            45677899999999999999999754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.41  E-value=0.022  Score=46.56  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=18.6

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      -|+|+|+.++|||+|+|+|.+
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999999964

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.37  E-value=0.036  Score=44.54  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.4

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|+.++|||+|+|+|+..
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            4566789999999999999999754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.37  E-value=0.048  Score=43.49  Aligned_cols=26  Identities=19%  Similarity=0.156  Sum_probs=21.9

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+..-|.|+|+.++|||+|+|+|+..
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            34566889999999999999999754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.34  E-value=0.034  Score=44.14  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=21.3

Q ss_pred             ceEEEEEEecccccChhHHHHHHHH
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .+.--|.|+|+.++|||+|+|+|+.
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            3566789999999999999999953

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.32  E-value=0.041  Score=45.17  Aligned_cols=25  Identities=20%  Similarity=0.191  Sum_probs=21.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|+.++|||+|+|+|+..
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcC
Confidence            4556889999999999999999754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.32  E-value=0.039  Score=45.33  Aligned_cols=25  Identities=16%  Similarity=0.072  Sum_probs=21.3

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|+.++|||+|+|+|+..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4566899999999999999999643

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.25  E-value=0.054  Score=44.77  Aligned_cols=25  Identities=32%  Similarity=0.274  Sum_probs=21.9

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ....|+|+|+.++|||+|+|+|.+.
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcC
Confidence            4567899999999999999999764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.21  E-value=0.047  Score=43.33  Aligned_cols=25  Identities=24%  Similarity=0.143  Sum_probs=21.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|+.++|||+|+|+|++.
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4456889999999999999999754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.18  E-value=0.087  Score=42.81  Aligned_cols=26  Identities=15%  Similarity=0.042  Sum_probs=22.4

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ....-|.|+|+.++|||+|+|+|++.
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Confidence            45677899999999999999999754

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.14  E-value=0.021  Score=48.36  Aligned_cols=28  Identities=29%  Similarity=0.261  Sum_probs=24.9

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+=.+|+|+|+.++|||+|++.|.+.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567999999999999999999998865

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.12  E-value=0.063  Score=42.98  Aligned_cols=26  Identities=15%  Similarity=0.034  Sum_probs=21.8

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+..-|.|+|+.++|||+|+|+|+..
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence            34556789999999999999999754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.10  E-value=0.042  Score=45.28  Aligned_cols=24  Identities=25%  Similarity=0.283  Sum_probs=20.7

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..-|.|+|+.++|||+|+|+|+..
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456889999999999999999753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.04  E-value=0.065  Score=47.08  Aligned_cols=25  Identities=28%  Similarity=0.212  Sum_probs=21.3

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|..++|||+|+|.|+..
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4567889999999999999999753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.01  E-value=0.042  Score=45.36  Aligned_cols=25  Identities=24%  Similarity=0.113  Sum_probs=21.3

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ...-|.|+|+.++|||+|+|+|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            4556889999999999999999754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.92  E-value=0.042  Score=43.50  Aligned_cols=23  Identities=22%  Similarity=0.221  Sum_probs=20.1

Q ss_pred             EEEEEEecccccChhHHHHHHHH
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      ..-|.|+|+.++|||+|+|+|.+
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            45688999999999999999964

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.88  E-value=0.032  Score=44.02  Aligned_cols=22  Identities=27%  Similarity=0.161  Sum_probs=19.3

Q ss_pred             EEEEEecccccChhHHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .-|.|+|+.++|||+|+|+|.+
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999964

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.85  E-value=0.097  Score=41.88  Aligned_cols=25  Identities=20%  Similarity=0.096  Sum_probs=21.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|+.++|||+|+|+|+..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            4556889999999999999999743

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.85  E-value=0.034  Score=45.73  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             eEEEEEEecccccChhHHHHHHHH
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +..-|.|+|+.++|||+|+|+|+.
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhc
Confidence            345678999999999999999953

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.74  E-value=0.097  Score=43.93  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=22.0

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ....-|.|+|+.++|||+|+|+|+..
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhC
Confidence            34567889999999999999999754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.71  E-value=0.12  Score=41.32  Aligned_cols=27  Identities=22%  Similarity=0.105  Sum_probs=23.2

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +.+..-|.|+|+.++|||+|+|+|+..
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            556778899999999999999999754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=94.66  E-value=0.033  Score=50.39  Aligned_cols=15  Identities=33%  Similarity=0.350  Sum_probs=12.2

Q ss_pred             EEEEEecCCCCCCCc
Q psy5031         207 AVILLDTQGTFDSES  221 (281)
Q Consensus       207 ~VlLlDTEG~~d~~~  221 (281)
                      .+.|+||+|+.....
T Consensus       166 ~~~l~DtpG~~~~~~  180 (282)
T 1puj_A          166 ELELLDTPGILWPKF  180 (282)
T ss_dssp             TEEEEECCCCCCSCC
T ss_pred             CEEEEECcCcCCCCC
Confidence            389999999987644

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.63  E-value=0.019  Score=48.17  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=23.0

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -.+|+|+|+.++|||+|++.|.+.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.63  E-value=0.052  Score=44.75  Aligned_cols=27  Identities=26%  Similarity=0.257  Sum_probs=21.2

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+..-|.|+|+.++|||+|+|+|+..
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            445667889999999999999999754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.59  E-value=0.094  Score=42.79  Aligned_cols=27  Identities=22%  Similarity=0.124  Sum_probs=22.7

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+..-|.|+|+.++|||+|+|+|...
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            445667889999999999999999754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=94.56  E-value=0.02  Score=47.45  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|+|+||.++|||+|++.|.+.+
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            68999999999999999998763

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=94.39  E-value=0.023  Score=47.11  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+|++.|++.+
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            78899999999999999998864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.36  E-value=0.044  Score=45.46  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=20.6

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|+.++|||+|+|+|+..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            4556789999999999999999743

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.07  E-value=0.029  Score=47.44  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+|++.|++.+
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            68899999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.99  E-value=0.032  Score=48.51  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|+|.|+.++|||+|++.|.+.+
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=93.84  E-value=0.035  Score=51.59  Aligned_cols=29  Identities=17%  Similarity=0.300  Sum_probs=25.5

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+..+|+|+|+.++|||+|+|.|++.+..
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~  100 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE  100 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            45889999999999999999999987543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=93.77  E-value=0.029  Score=47.50  Aligned_cols=23  Identities=35%  Similarity=0.359  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+|++.|++..
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            67899999999999999998864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=93.77  E-value=0.041  Score=44.95  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=5.9

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|+.++|||.|+|+|+..
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEC-----------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4467889999999999999999754

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=93.71  E-value=0.035  Score=45.89  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=21.2

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|+|+|+.++|||+|++.|.+.+
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            78999999999999999998875

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=93.70  E-value=0.055  Score=51.48  Aligned_cols=24  Identities=38%  Similarity=0.285  Sum_probs=21.4

Q ss_pred             eEEEEEEecccccChhHHHHHHHH
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      -++-|+|+|...+|||+|+|.|.+
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~   94 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTG   94 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhC
Confidence            367899999999999999999964

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=93.68  E-value=0.04  Score=49.01  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=22.6

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+.-.|+|+|...+|||+|+|.|++.
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence            45567999999999999999999865

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=93.62  E-value=0.14  Score=43.06  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.5

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+..-|.|+|+.++|||+|+|+|...
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence            45677899999999999999999754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=93.54  E-value=0.14  Score=42.41  Aligned_cols=26  Identities=12%  Similarity=0.167  Sum_probs=22.2

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ....-|.|+|+.++|||.|+|+|...
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhC
Confidence            45677899999999999999999754

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=93.52  E-value=0.07  Score=44.92  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=28.6

Q ss_pred             HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +.++.++..   ...+-.+|+|+|+.++|||+|++.|...+.
T Consensus         9 ~l~~~~~~~---~~~~~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A            9 FLCKTILAI---KTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             HHHHHHHTS---CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh---ccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345555542   123446899999999999999999988764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=93.46  E-value=0.067  Score=48.67  Aligned_cols=29  Identities=21%  Similarity=0.160  Sum_probs=24.9

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+-.+|+|+|+.++|||+|++.|.+.+..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            44568999999999999999999987653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=93.45  E-value=0.035  Score=47.79  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+|++.|++..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            67889999999999999998864

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=93.39  E-value=0.049  Score=45.85  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .++|+|+.++|||+|++.|++.+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=93.38  E-value=0.04  Score=44.42  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+|+.++|||+|++.|...+
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.36  E-value=0.045  Score=50.36  Aligned_cols=29  Identities=24%  Similarity=0.252  Sum_probs=24.7

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+=-+|+|+|+.++|||+|++.|.+.+..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            34579999999999999999999887643

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.28  E-value=0.047  Score=47.32  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +++|+|+.++|||+||+.|++. ..
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl-~p   47 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ-AL   47 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC-CC
Confidence            5788999999999999999887 44

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.25  E-value=0.035  Score=48.78  Aligned_cols=23  Identities=30%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+||+.|++.+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            68999999999999999997654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=93.25  E-value=0.041  Score=45.08  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=20.3

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+|+|+|+.++|||+|++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            36889999999999999999765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.13  E-value=0.056  Score=45.52  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|+|+|+.+||||++++.|.+.+
T Consensus         7 ~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999998754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.08  E-value=0.029  Score=47.00  Aligned_cols=27  Identities=26%  Similarity=0.497  Sum_probs=23.8

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ..+.+|+|+|..++|||+|+|+|+..+
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999999874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.07  E-value=0.052  Score=47.31  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+||.++|||+|++.|+...
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            478899999999999999998764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=93.04  E-value=0.056  Score=47.50  Aligned_cols=23  Identities=30%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -+|+|+|+.++|||+|++.|.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~   50 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAES   50 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            48999999999999999999954

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.04  E-value=0.056  Score=48.36  Aligned_cols=26  Identities=27%  Similarity=0.415  Sum_probs=23.0

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+|+|+||.++|||+||+.|++.+..
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHhCCC
Confidence            47899999999999999999997643

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=93.03  E-value=0.064  Score=42.78  Aligned_cols=24  Identities=17%  Similarity=0.041  Sum_probs=21.5

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|.|.|+.++|||++++.|.+.+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999987753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.01  E-value=0.055  Score=42.11  Aligned_cols=23  Identities=26%  Similarity=0.080  Sum_probs=19.8

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|+.++|||+|+|+|+..
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            34778999999999999999754

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=92.96  E-value=0.051  Score=44.77  Aligned_cols=20  Identities=25%  Similarity=0.237  Sum_probs=17.9

Q ss_pred             EEEEEecccccChhHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFL   76 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~L   76 (281)
                      .+++++|+.++|||+|++.+
T Consensus        10 ei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999953

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=92.94  E-value=0.063  Score=45.00  Aligned_cols=27  Identities=30%  Similarity=0.212  Sum_probs=23.6

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +=.+|.|+|+.++|||+|++.|.+.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999998764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=92.93  E-value=0.052  Score=48.77  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=21.6

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .|+|+|+.++|||+|+|.|++....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5789999999999999999987543

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=92.92  E-value=0.062  Score=45.01  Aligned_cols=25  Identities=20%  Similarity=0.096  Sum_probs=21.8

Q ss_pred             EEEEEEecccccChhHHHHHHHHhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      =.+|+|+|+.++|||+|++.|.+.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhh
Confidence            3578899999999999999998764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=92.91  E-value=0.039  Score=48.03  Aligned_cols=23  Identities=43%  Similarity=0.345  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+||+.|++.+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999997654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=92.87  E-value=0.077  Score=42.08  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=22.0

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+..-|.|+|+.++|||+|+|+|+..
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            45667899999999999999999864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=92.86  E-value=0.11  Score=48.35  Aligned_cols=28  Identities=25%  Similarity=0.324  Sum_probs=24.1

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +.-.||+|+|+.++|||+|++.|.+.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4557899999999999999999987753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.86  E-value=0.06  Score=42.12  Aligned_cols=22  Identities=27%  Similarity=0.143  Sum_probs=19.4

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|+.++|||+|+|+|++.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4788999999999999999754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.85  E-value=0.056  Score=42.43  Aligned_cols=23  Identities=26%  Similarity=0.251  Sum_probs=19.9

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|+.++|||+|+|+|+..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            34789999999999999999854

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=92.82  E-value=0.043  Score=48.55  Aligned_cols=25  Identities=20%  Similarity=0.321  Sum_probs=22.7

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+++|+||.++|||+||+.|++.+.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            7899999999999999999987654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.82  E-value=0.053  Score=42.50  Aligned_cols=22  Identities=36%  Similarity=0.229  Sum_probs=19.1

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|+.++|||+|+|+|+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4678999999999999999753

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=92.71  E-value=0.062  Score=43.06  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=20.2

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..|+++|+.++|||+|+|+|.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46889999999999999999743

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=92.71  E-value=0.062  Score=44.95  Aligned_cols=38  Identities=24%  Similarity=0.381  Sum_probs=27.2

Q ss_pred             HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +.|+.++.- .+.  +=.+++|+||.++|||+|++.|+...
T Consensus        12 ~~LD~~l~g-gi~--~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           12 KSLDKLLGG-GIE--TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             HHHHHHTTS-SEE--SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             hhHHhHhcC-CCC--CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            566665531 111  22589999999999999999998753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=92.69  E-value=0.065  Score=41.76  Aligned_cols=22  Identities=36%  Similarity=0.418  Sum_probs=19.4

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|+.++|||+|+|+|...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4788999999999999999764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=92.65  E-value=0.063  Score=45.56  Aligned_cols=24  Identities=13%  Similarity=0.270  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|+|+||.++|||+|++.|++.+
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            378899999999999999998764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=92.63  E-value=0.074  Score=44.15  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=22.6

Q ss_pred             EEEEEEecccccChhHHHHHHHHhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      =.+++++|+.++|||+|++.|++.+
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3579999999999999999999886

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.63  E-value=0.071  Score=46.14  Aligned_cols=24  Identities=13%  Similarity=0.173  Sum_probs=21.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|+|+|+.++|||+|++.|.+.+
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=92.61  E-value=0.049  Score=48.43  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+||.++|||+||+.|++.+
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=92.60  E-value=0.049  Score=47.56  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+||+.|++.+
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=92.58  E-value=0.064  Score=41.53  Aligned_cols=22  Identities=36%  Similarity=0.253  Sum_probs=19.2

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.++|+.++|||+|+|+|+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3678999999999999999754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=92.55  E-value=0.05  Score=47.82  Aligned_cols=24  Identities=46%  Similarity=0.544  Sum_probs=21.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+|+.++|||+||+.|++.+.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            789999999999999999987643

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=92.55  E-value=0.066  Score=48.59  Aligned_cols=27  Identities=26%  Similarity=0.333  Sum_probs=23.4

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +--+|+|+|+.++|||+|++.|.+.+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            346899999999999999999988653

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.53  E-value=0.074  Score=48.53  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=23.6

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ++-|+.|.|+.++|||+|||.|++..
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc
Confidence            57899999999999999999999763

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=92.53  E-value=0.051  Score=46.51  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=15.6

Q ss_pred             EEEEEecccccChhHHHHHHH-Hhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLL-RYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll-~~l   80 (281)
                      .+|+|+||.++|||+|++.|. +.+
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            378999999999999999998 653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=92.52  E-value=0.093  Score=48.96  Aligned_cols=20  Identities=35%  Similarity=0.408  Sum_probs=17.9

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |+|+|+.++|||+|+|.|+.
T Consensus        40 I~vvG~~g~GKSTLln~L~~   59 (361)
T 2qag_A           40 LMVVGESGLGKSTLINSLFL   59 (361)
T ss_dssp             EEECCCTTSCHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHhC
Confidence            58999999999999999853

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=92.44  E-value=0.076  Score=43.69  Aligned_cols=23  Identities=22%  Similarity=0.112  Sum_probs=20.6

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .++.++|+.++|||+|++.|.+.
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhcc
Confidence            37899999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=92.42  E-value=0.064  Score=47.45  Aligned_cols=22  Identities=32%  Similarity=0.243  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++|+|+.++|||+|++.|++.
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999885

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=92.38  E-value=0.054  Score=47.64  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=21.6

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+++|+|+.++|||+||+.|++.+.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3789999999999999999987643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.37  E-value=0.073  Score=42.59  Aligned_cols=24  Identities=33%  Similarity=0.200  Sum_probs=20.5

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -.-|.|+|+.++|||+|+|+|++.
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhC
Confidence            345789999999999999999854

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=92.36  E-value=0.077  Score=49.06  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=28.1

Q ss_pred             HHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          39 YEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        39 ~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ..+|+.+...  +..  =.+|+|+||.++|||+|++.|++.+
T Consensus       113 ~~vL~~vsl~--i~~--Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          113 INALKLWLKG--IPK--KNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHHHT--CTT--CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhhhccceEE--ecC--CCEEEEECCCCCcHHHHHHHHhhhc
Confidence            4567665542  222  2467899999999999999999876

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=92.34  E-value=0.12  Score=43.15  Aligned_cols=26  Identities=15%  Similarity=0.097  Sum_probs=20.9

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+-.-|.|+|..++|||+|+|+++..
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~   38 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTG   38 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            34556889999999999999996543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=92.33  E-value=0.087  Score=42.69  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|.|+|+.++|||+|++.|.+.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhh
Confidence            478999999999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=92.31  E-value=0.056  Score=48.32  Aligned_cols=23  Identities=30%  Similarity=0.353  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+||+.|++.+
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999997654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.27  E-value=0.057  Score=47.47  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+||+.|++.+
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=92.26  E-value=0.078  Score=49.07  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+++.+..    .-.+-.+|+|+|+.++|||+|+|.|++.+..
T Consensus        43 ~~l~~i~~----~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           43 DLIDAVLP----QTGRAIRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             HHHHHHGG----GCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCc----ccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            45665532    2245678999999999999999999987643

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.24  E-value=0.08  Score=41.67  Aligned_cols=23  Identities=22%  Similarity=0.122  Sum_probs=19.8

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|+.++|||+|+|+|...
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            45779999999999999999754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=92.23  E-value=0.058  Score=47.78  Aligned_cols=23  Identities=30%  Similarity=0.554  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.23  E-value=0.064  Score=43.56  Aligned_cols=22  Identities=41%  Similarity=0.386  Sum_probs=19.3

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|+|+|+.++|||+|+|+|.+.
T Consensus         6 ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            6 KVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5778999999999999999754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=92.22  E-value=0.051  Score=45.75  Aligned_cols=26  Identities=19%  Similarity=0.414  Sum_probs=23.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+|+|+|+.++|||+|++.|++.+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            47899999999999999999998654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=92.21  E-value=0.98  Score=41.47  Aligned_cols=25  Identities=36%  Similarity=0.356  Sum_probs=21.4

Q ss_pred             ceEEEEEEecccccChhHHHHHHHH
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .....|+++|+.++|||+|+|.|.+
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~  189 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTT  189 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456889999999999999999954

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=92.21  E-value=0.055  Score=48.61  Aligned_cols=23  Identities=39%  Similarity=0.618  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+|++.|++.+
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            68899999999999999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=92.20  E-value=0.058  Score=48.86  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+|++.|++.+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            68999999999999999998764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=92.19  E-value=0.086  Score=43.11  Aligned_cols=26  Identities=19%  Similarity=0.124  Sum_probs=22.5

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      =..+.++||.+||||+|++.+.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35678999999999999999998764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=92.18  E-value=0.049  Score=45.72  Aligned_cols=27  Identities=30%  Similarity=0.527  Sum_probs=23.6

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .++.+|.|+|..++|||+|+|+|+...
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            356788899999999999999999875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=92.18  E-value=0.07  Score=47.77  Aligned_cols=22  Identities=32%  Similarity=0.259  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++|+|+.++|||+||+.|++.
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.17  E-value=0.086  Score=41.28  Aligned_cols=21  Identities=24%  Similarity=0.131  Sum_probs=19.1

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|+|+|...
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999765

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=92.15  E-value=0.079  Score=41.79  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=19.2

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +|.|+|+.+||||++++.| ..
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~   23 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KE   23 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HH
T ss_pred             EEEEECCCCCCHHHHHHHH-HH
Confidence            6889999999999999999 54

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.13  E-value=0.067  Score=43.39  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=21.3

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|+.++|||+|+|+|+..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4566789999999999999999754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=92.11  E-value=0.05  Score=47.43  Aligned_cols=23  Identities=35%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+||+.|++.+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67889999999999999997764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=92.06  E-value=0.056  Score=44.97  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=22.0

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +|+|.|+.+||||+|++.|.+.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            6889999999999999999988643

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=92.03  E-value=0.091  Score=45.60  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=20.2

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+||.++|||+|+|.|++..
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            56789999999999999998763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=92.01  E-value=0.076  Score=42.81  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=20.7

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -..|+++|+.++|||+|+|+|...
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            356889999999999999999753

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=91.98  E-value=0.097  Score=44.22  Aligned_cols=27  Identities=22%  Similarity=0.229  Sum_probs=23.7

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +.+++|+|+.++|||+|++.|++.+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            568899999999999999999987643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.97  E-value=0.065  Score=47.93  Aligned_cols=23  Identities=17%  Similarity=0.327  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+||+.|++.+
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999997754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=91.94  E-value=0.16  Score=41.79  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=19.2

Q ss_pred             ceEEEEEEecccccChhHHHHHHHH
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      ++-.-|.++|..++|||.|+|++.+
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3445677889999999999998754

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=91.86  E-value=0.067  Score=48.07  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999997764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=91.85  E-value=0.081  Score=42.03  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ...|.|+|+.++|||+|+|+|...
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            446789999999999999999754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=91.84  E-value=0.069  Score=47.52  Aligned_cols=23  Identities=43%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+||+.|++.+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999997654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=91.83  E-value=0.068  Score=48.03  Aligned_cols=24  Identities=38%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+||+.|++.+.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Confidence            689999999999999999987643

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=91.81  E-value=0.069  Score=47.65  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            78999999999999999998753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=91.80  E-value=0.093  Score=42.58  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=21.3

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-..|.|+|+.++|||+|+|+|...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3456789999999999999999764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=91.74  E-value=0.15  Score=40.51  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=21.3

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|+.++|||+|+|+|...
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            3456789999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=91.73  E-value=0.095  Score=43.53  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +|+|+|+.++|||++++.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999987

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=91.73  E-value=0.071  Score=47.45  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68999999999999999997764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=91.72  E-value=0.071  Score=47.64  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68899999999999999997654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=91.72  E-value=0.098  Score=41.65  Aligned_cols=25  Identities=24%  Similarity=0.088  Sum_probs=21.4

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|+.++|||+|+|+|+..
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            4556789999999999999999854

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=91.66  E-value=0.097  Score=43.04  Aligned_cols=23  Identities=22%  Similarity=0.546  Sum_probs=21.0

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -+|+|+|+.+||||++.+.|.+.
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC
Confidence            57999999999999999999865

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=91.63  E-value=0.091  Score=43.77  Aligned_cols=24  Identities=21%  Similarity=0.133  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|.|+|+.++|||+|++.|.+.+
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378899999999999999998775

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=91.61  E-value=0.077  Score=46.59  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ...-|+|+|...+|||+|+|+|++.
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence            4457899999999999999999854

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=91.61  E-value=0.085  Score=44.15  Aligned_cols=26  Identities=19%  Similarity=0.404  Sum_probs=22.8

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +-.+|+|+|+.++|||+|++.|.+.+
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            34689999999999999999998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=91.58  E-value=0.11  Score=42.29  Aligned_cols=39  Identities=26%  Similarity=0.163  Sum_probs=29.0

Q ss_pred             eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .|.+++..+ .  .+   +=.++.++|+.++|||+|++.+.+.+.
T Consensus        23 ~n~~~~~~l-~--~~---~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           23 ENAELVYVL-R--HK---HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CTHHHHHHC-C--CC---CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHH-H--hc---CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            677888744 2  22   223567899999999999999998753

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.56  E-value=0.14  Score=41.64  Aligned_cols=27  Identities=22%  Similarity=0.062  Sum_probs=22.8

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+..-|.|+|+.++|||+|+|+|+..
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhC
Confidence            345667889999999999999999854

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=91.54  E-value=0.051  Score=44.87  Aligned_cols=25  Identities=32%  Similarity=0.282  Sum_probs=21.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-..|+|+|+.++|||+|+|.|++.
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4467899999999999999999643

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=91.53  E-value=0.089  Score=44.20  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+|+.++|||+|++.|...+
T Consensus        14 ~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           14 PLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            57788999999999999998875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=91.49  E-value=0.12  Score=41.81  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=21.6

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|.|.|+.++|||++++.|...+.
T Consensus         5 ~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            5 VVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999988754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=91.46  E-value=0.12  Score=42.27  Aligned_cols=24  Identities=17%  Similarity=0.279  Sum_probs=21.5

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|.|.|+.++|||++++.|.+++.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            588999999999999999998763

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.45  E-value=0.099  Score=42.39  Aligned_cols=23  Identities=35%  Similarity=0.173  Sum_probs=19.9

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|+.++|||+|+|+|+..
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            45788899999999999999764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=91.44  E-value=0.079  Score=47.94  Aligned_cols=24  Identities=29%  Similarity=0.279  Sum_probs=21.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+|+.++|||+||+.|++.+.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            689999999999999999987643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.43  E-value=0.084  Score=42.39  Aligned_cols=22  Identities=32%  Similarity=0.241  Sum_probs=19.0

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|+.++|||+|+|+|.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3678999999999999999753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=91.42  E-value=0.11  Score=48.74  Aligned_cols=26  Identities=38%  Similarity=0.454  Sum_probs=23.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+|.|+||.++|||+||+.+++.+..
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~  149 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNN  149 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccC
Confidence            38999999999999999999998654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=91.39  E-value=0.097  Score=44.42  Aligned_cols=28  Identities=21%  Similarity=0.150  Sum_probs=24.1

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+.+|+|+|+.++|||+|++.|++.+..
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            3458999999999999999999998754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=91.37  E-value=0.12  Score=41.83  Aligned_cols=24  Identities=25%  Similarity=0.247  Sum_probs=21.8

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|.|.|+.++|||++++.|...+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=91.33  E-value=0.11  Score=41.97  Aligned_cols=25  Identities=32%  Similarity=0.179  Sum_probs=21.0

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|..++|||+|+|+|+..
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC
Confidence            3456779999999999999999854

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=91.33  E-value=0.1  Score=43.44  Aligned_cols=21  Identities=19%  Similarity=0.506  Sum_probs=19.7

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +|+|+|+.+||||++++.|..
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999976

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=91.27  E-value=0.1  Score=44.42  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=21.8

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|+|+|+.++|||+|++.|+..+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            578999999999999999998865

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.23  E-value=0.11  Score=41.47  Aligned_cols=25  Identities=32%  Similarity=0.335  Sum_probs=21.0

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.++|+.++|||.|+|+|...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456789999999999999999764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.19  E-value=0.099  Score=41.00  Aligned_cols=21  Identities=33%  Similarity=0.200  Sum_probs=18.3

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      -|.++|+.++|||+|+|+|.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478899999999999999953

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=91.19  E-value=0.13  Score=40.68  Aligned_cols=44  Identities=14%  Similarity=0.085  Sum_probs=28.8

Q ss_pred             eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      -.+++++.+...  +....-..|-|+|+.++|||+|+..+.+.+.+
T Consensus        26 g~~~~~~~l~~~--l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           26 GRDEEIRRTIQV--LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SCHHHHHHHHHH--HTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHH--HhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            345566655442  11111223458899999999999999988754

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=91.14  E-value=0.14  Score=42.25  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|+|.|+.+||||++.+.|...+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=91.02  E-value=0.14  Score=42.45  Aligned_cols=25  Identities=12%  Similarity=0.167  Sum_probs=21.6

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .++.|+|+.++|||+|++.++..+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4788899999999999999987643

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=90.99  E-value=0.1  Score=48.11  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      --|+|+|++.+|||+|+|.|.+.
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            38999999999999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=90.97  E-value=0.13  Score=41.01  Aligned_cols=23  Identities=26%  Similarity=0.172  Sum_probs=20.0

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|+.++|||+|+|+|...
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45789999999999999999754

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=90.95  E-value=0.13  Score=47.06  Aligned_cols=27  Identities=33%  Similarity=0.252  Sum_probs=23.7

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      =.+|+|+|+.++|||+|++.|...+..
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            358999999999999999999988653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=90.90  E-value=0.14  Score=44.65  Aligned_cols=26  Identities=19%  Similarity=0.356  Sum_probs=22.8

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      --+|+|.|+.+||||++.+.|...+.
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35899999999999999999988653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.89  E-value=0.13  Score=41.99  Aligned_cols=25  Identities=16%  Similarity=0.054  Sum_probs=21.7

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|+.++|||+|+|+|+..
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcC
Confidence            4566889999999999999999875

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=90.88  E-value=0.11  Score=50.37  Aligned_cols=29  Identities=28%  Similarity=0.312  Sum_probs=22.4

Q ss_pred             CCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031          51 VKDKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        51 ~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +...-+--|+|+|+.++|||+|+|.|++.
T Consensus        37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           37 VSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            33333334899999999999999999875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=90.80  E-value=0.45  Score=45.31  Aligned_cols=17  Identities=29%  Similarity=0.362  Sum_probs=11.1

Q ss_pred             chhhccCchhHHHHHHh
Q psy5031         134 VSAFRKGKSFLLDFLLR  150 (281)
Q Consensus       134 ~~~~r~gkS~Lln~l~~  150 (281)
                      +|.-..|||.|+|.|++
T Consensus       201 vG~~~vGKSslin~l~~  217 (456)
T 4dcu_A          201 IGRPNVGKSSLVNAMLG  217 (456)
T ss_dssp             ECSTTSSHHHHHHHHHT
T ss_pred             ecCCCCCHHHHHHHHhC
Confidence            45566677777776664

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=90.79  E-value=0.12  Score=42.50  Aligned_cols=26  Identities=19%  Similarity=0.066  Sum_probs=21.7

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+..-|.|+|..++|||+|+|+|+..
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            34567889999999999999999864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=90.78  E-value=0.071  Score=49.14  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=21.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -+|+|+|+.++|||+|++.|++.+.
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCC
Confidence            3689999999999999999987643

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=90.74  E-value=0.15  Score=41.74  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=21.1

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+|+.+||||++.+.|.+++
T Consensus        14 ~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           14 IIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999998875

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=90.73  E-value=0.11  Score=49.98  Aligned_cols=25  Identities=32%  Similarity=0.343  Sum_probs=21.9

Q ss_pred             EEEEEEecccccChhHHHHHHHHhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -.+|+|+|+.++|||+|+|.|++..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCC
Confidence            3489999999999999999998753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=90.69  E-value=0.14  Score=40.71  Aligned_cols=23  Identities=22%  Similarity=0.122  Sum_probs=19.5

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|+.++|||+|+|++...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            34678899999999999999754

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=90.66  E-value=0.14  Score=49.18  Aligned_cols=28  Identities=29%  Similarity=0.182  Sum_probs=24.3

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +=.+|.|+||.++|||+||+.+++.+..
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            4458999999999999999999998643

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=90.62  E-value=0.15  Score=47.90  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=23.5

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      =.+|+|+|+.++|||+||+.|++.+..
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            357999999999999999999997653

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=90.62  E-value=0.17  Score=41.01  Aligned_cols=24  Identities=25%  Similarity=0.196  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|.|.|+.+||||++...|.+.+
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999998764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=90.61  E-value=0.16  Score=40.72  Aligned_cols=21  Identities=19%  Similarity=0.218  Sum_probs=19.8

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +|.|+|+.+||||++.+.|.+
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            688999999999999999987

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=90.60  E-value=0.14  Score=41.96  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=22.7

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+-.-|.|+|+.++|||+|+|+++..
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            345567889999999999999999765

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=90.53  E-value=0.15  Score=42.89  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=20.3

Q ss_pred             EEEEEecccccChhHHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .+|+|.|+.+||||++++.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=90.48  E-value=0.23  Score=40.46  Aligned_cols=27  Identities=15%  Similarity=0.258  Sum_probs=22.6

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .++-.-|.|+|+.++|||+|+|+|+..
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence            345567889999999999999999754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=90.45  E-value=0.1  Score=47.17  Aligned_cols=22  Identities=32%  Similarity=0.297  Sum_probs=19.7

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++++|+.++|||+|||.|+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTT
T ss_pred             eEEEECCCCCcHHHHHHHhccc
Confidence            6789999999999999999654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=90.38  E-value=0.14  Score=46.41  Aligned_cols=20  Identities=35%  Similarity=0.383  Sum_probs=18.7

Q ss_pred             EEEEecccccChhHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll   77 (281)
                      +++++|+.++|||+|+|.|+
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            67899999999999999998

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=90.37  E-value=0.18  Score=41.10  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=21.8

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+|.+.|+.++|||++++.|.+.+.
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3677999999999999999998763

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=90.37  E-value=0.12  Score=41.82  Aligned_cols=24  Identities=21%  Similarity=0.104  Sum_probs=20.2

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -.-|.|+|..++|||+|+|+|...
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            345778999999999999999754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=90.33  E-value=0.17  Score=41.16  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|.++|+.++|||++++.|.+.+
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            478899999999999999998875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=90.31  E-value=0.18  Score=40.84  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.7

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|+|.|+.+||||++.+.|.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998763

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=90.31  E-value=0.12  Score=41.74  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=20.8

Q ss_pred             ceEEEEEEecccccChhHHHHHHHH
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .+-.-|.|+|+.++|||+|+|+|..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            3456788999999999999999964

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=90.30  E-value=0.12  Score=46.46  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.25  E-value=0.16  Score=41.58  Aligned_cols=26  Identities=27%  Similarity=0.218  Sum_probs=21.1

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+-.-|.|+|+.++|||+|+|+|...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34456789999999999999999764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=90.25  E-value=0.17  Score=41.21  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|.|+.+||||++.+.|.+.+
T Consensus        11 ~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A           11 IIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999998765

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=90.19  E-value=0.24  Score=45.78  Aligned_cols=28  Identities=21%  Similarity=0.138  Sum_probs=24.2

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ...-+|+|+|+.++|||+|+|.|...+.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3566889999999999999999998764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=90.18  E-value=0.18  Score=40.62  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|-++|+.++|||++.+.|.+.+
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            67899999999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=90.18  E-value=0.11  Score=48.47  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|+|+|+.++|||+|+|.|++..
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            67788999999999999999874

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=90.16  E-value=0.72  Score=46.83  Aligned_cols=27  Identities=15%  Similarity=0.228  Sum_probs=23.7

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ...+..|+|+|...+|||+|+|+|+.+
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~   33 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYY   33 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHh
Confidence            345788999999999999999999865

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=90.12  E-value=0.17  Score=46.19  Aligned_cols=26  Identities=23%  Similarity=0.256  Sum_probs=23.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .|++++|+.++|||+|++.|+..+..
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~l~~  126 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHRLKN  126 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999988654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=90.11  E-value=0.22  Score=40.71  Aligned_cols=27  Identities=26%  Similarity=0.162  Sum_probs=21.7

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +.+-.-|.|+|+.++|||.|+|+|+..
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence            345567889999999999999999764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=90.10  E-value=0.2  Score=40.77  Aligned_cols=23  Identities=22%  Similarity=0.135  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.+.|+.+||||++.+.|.+.+
T Consensus         6 ~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            6 AVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=90.07  E-value=0.22  Score=41.10  Aligned_cols=25  Identities=24%  Similarity=0.198  Sum_probs=21.6

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|..+.|||.|+|+|.+.
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4567889999999999999999854

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=90.03  E-value=0.12  Score=47.14  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=21.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+|+.++|||+||+.|++.+.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            689999999999999999987643

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=90.03  E-value=0.18  Score=46.78  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=24.7

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +=.||+++|+.++|||+|++.|.+++..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~  155 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKN  155 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4479999999999999999999988654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=90.01  E-value=0.19  Score=40.60  Aligned_cols=24  Identities=29%  Similarity=0.224  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|.+.|+.+||||++.+.|...+
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.93  E-value=0.16  Score=41.20  Aligned_cols=25  Identities=20%  Similarity=0.115  Sum_probs=20.9

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|+.++|||+|+|+|...
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3456789999999999999999743

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=89.93  E-value=0.2  Score=41.15  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=22.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+|.|.|+.+||||++++.|...+.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3789999999999999999988753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=89.90  E-value=0.16  Score=47.98  Aligned_cols=22  Identities=41%  Similarity=0.422  Sum_probs=19.8

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++++|+.++|||+|+|.|+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcc
Confidence            6789999999999999999854

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=89.90  E-value=0.2  Score=41.80  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|.|+|+.++|||+++..|.+.+
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            478899999999999999999875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.89  E-value=0.17  Score=41.94  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=21.4

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|+.++|||+|+|+|.+.
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3456789999999999999999865

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=89.85  E-value=0.22  Score=40.25  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=21.0

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|+.++|||+|+|+|...
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456789999999999999999764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=89.83  E-value=0.2  Score=41.54  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=22.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+|.|.|+.+||||++.+.|.+.+..
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            36899999999999999999987643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.79  E-value=0.12  Score=41.41  Aligned_cols=24  Identities=21%  Similarity=0.152  Sum_probs=20.0

Q ss_pred             eEEEEEEecccccChhHHHHHHHH
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +-.-|.|+|+.++|||+|+|+|..
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            445677899999999999999963

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=89.77  E-value=0.16  Score=48.26  Aligned_cols=25  Identities=28%  Similarity=0.251  Sum_probs=21.6

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -+++|+||.++|||+|++.|++.+.
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCCC
Confidence            3689999999999999999987643

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=89.75  E-value=0.2  Score=44.06  Aligned_cols=25  Identities=12%  Similarity=0.096  Sum_probs=22.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +|.|+|+.+||||+|...|...+..
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~   27 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGW   27 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCC
Confidence            7899999999999999999887543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.71  E-value=0.17  Score=41.93  Aligned_cols=23  Identities=26%  Similarity=0.193  Sum_probs=19.8

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|+.++|||+|+|+|...
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            45788999999999999999764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=89.70  E-value=0.18  Score=40.38  Aligned_cols=23  Identities=22%  Similarity=0.118  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|.|+.+||||++++.|...+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998765

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=89.49  E-value=0.14  Score=43.97  Aligned_cols=26  Identities=23%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+=.+|+|.|+-++|||+|++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34468999999999999999999765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=89.47  E-value=0.17  Score=44.57  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-.|+++|+.++|||+|+|+|.+.
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            346889999999999999999754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=89.46  E-value=0.19  Score=40.83  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+|+.+||||++...|...+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998765

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=89.46  E-value=0.16  Score=45.94  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=18.8

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|+|.|+.+||||++.+.|...+.
T Consensus         7 iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            7 IISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            799999999999999999988654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=89.45  E-value=0.19  Score=41.73  Aligned_cols=26  Identities=15%  Similarity=0.092  Sum_probs=21.9

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ....-|.|+|+.++|||+|+|+|+..
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence            34567889999999999999999753

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=89.41  E-value=0.53  Score=40.56  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=18.5

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|..+.|||.|++++...
T Consensus        15 KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCcCHHHHHHHHHhC
Confidence            4667899999999999999753

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=89.39  E-value=0.24  Score=39.49  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|.|+.+||||++++.|...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998865

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=89.36  E-value=0.19  Score=41.25  Aligned_cols=23  Identities=26%  Similarity=0.189  Sum_probs=20.0

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|+.++|||+|+|++...
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999999754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=89.35  E-value=0.25  Score=39.75  Aligned_cols=28  Identities=25%  Similarity=0.232  Sum_probs=22.5

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ....+|.|.|..+||||++...|...+.
T Consensus         5 ~~~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            5 HHMQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             ---CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             cccceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3567899999999999999999988653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=89.34  E-value=0.28  Score=39.75  Aligned_cols=27  Identities=22%  Similarity=0.123  Sum_probs=23.1

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+..-|.|+|+.++|||.|+|+|++.
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            345677899999999999999999865

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=89.33  E-value=0.23  Score=41.16  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.7

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|.|.|+.+||||++++.|.+.+.
T Consensus        11 ~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A           11 LIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            788999999999999999998764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=89.31  E-value=0.18  Score=47.51  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=21.4

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+||+.|++...
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            789999999999999999987643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=89.28  E-value=0.17  Score=47.47  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+.+|+|+|+.++|||+|+|.|.+.
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~  202 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGL  202 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCC
Confidence            5667999999999999999999754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=89.27  E-value=0.17  Score=40.45  Aligned_cols=25  Identities=16%  Similarity=0.077  Sum_probs=11.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|+.++|||+|+|+|...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEEECCCCC------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            5667899999999999999999754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=89.26  E-value=0.21  Score=41.33  Aligned_cols=25  Identities=28%  Similarity=0.259  Sum_probs=20.3

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|+.++|||.|+|+|...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3456789999999999999999764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=89.25  E-value=0.19  Score=46.33  Aligned_cols=27  Identities=30%  Similarity=0.359  Sum_probs=23.5

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      -..++|+|+.++|||+|++.|++.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            567899999999999999999987543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=89.16  E-value=0.31  Score=39.61  Aligned_cols=27  Identities=26%  Similarity=0.240  Sum_probs=22.2

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+-.-|.|+|..++|||+|+|+|.+.
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            345566789999999999999999764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=89.16  E-value=0.12  Score=47.70  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|+|+|+.++|||+|||.|++..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67889999999999999998874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=89.04  E-value=0.19  Score=47.46  Aligned_cols=24  Identities=17%  Similarity=0.188  Sum_probs=21.3

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+||+.|++.+.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            689999999999999999987643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=89.03  E-value=0.21  Score=41.22  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=19.7

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-|.|+|..++|||+|+|+|...
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35778999999999999999764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=89.03  E-value=0.18  Score=47.62  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.4

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+||+.|++...
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            789999999999999999987653

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=89.02  E-value=0.53  Score=41.04  Aligned_cols=24  Identities=13%  Similarity=0.242  Sum_probs=21.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|.++|+.+||||+++..|.+.+
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            678899999999999999998875

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=89.01  E-value=0.24  Score=40.79  Aligned_cols=23  Identities=13%  Similarity=0.208  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|.|+.++|||++++.|.+.+
T Consensus         6 ~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            6 LIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998875

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=89.00  E-value=0.2  Score=47.29  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=21.3

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+||+.|++...
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHCCCC
Confidence            688999999999999999987643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=88.98  E-value=0.21  Score=41.91  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=21.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ...-|.|+|+..+|||+|+|+|.+.
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3456789999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=88.97  E-value=0.29  Score=40.07  Aligned_cols=28  Identities=21%  Similarity=0.206  Sum_probs=23.8

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +=.+|.++|+.++|||++++.|...+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~   39 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQK   39 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4467889999999999999999988653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=88.95  E-value=0.2  Score=40.84  Aligned_cols=23  Identities=22%  Similarity=0.159  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+|+.+||||++...|...+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            48899999999999999998865

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=88.95  E-value=0.32  Score=44.76  Aligned_cols=28  Identities=21%  Similarity=0.242  Sum_probs=24.1

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+..+|+|+|+.++|||+|+|.|+..+.
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4567788999999999999999988754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=88.94  E-value=0.2  Score=40.51  Aligned_cols=27  Identities=19%  Similarity=0.233  Sum_probs=21.6

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+-.-|.|+|..++|||+|+|+|+..
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            456667889999999999999999643

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=88.90  E-value=0.27  Score=39.92  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.++|+.++|||++...|.+.+
T Consensus         7 ~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            7 NIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57789999999999999998875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=88.87  E-value=0.2  Score=47.25  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=21.3

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+||+.|++...
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            688999999999999999987643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=88.86  E-value=0.24  Score=39.27  Aligned_cols=24  Identities=17%  Similarity=0.056  Sum_probs=20.8

Q ss_pred             EEEecccccChhHHHHHHHHhhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      |-|+|+.++|||+|+..+.+.+..
T Consensus        46 vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           46 PILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             EEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHh
Confidence            468999999999999999988643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=88.80  E-value=0.2  Score=47.70  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=21.4

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+||+.|++...
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHcCCC
Confidence            689999999999999999987643

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=88.72  E-value=0.21  Score=47.32  Aligned_cols=24  Identities=17%  Similarity=0.202  Sum_probs=21.3

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+||+.|++...
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            788999999999999999987643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=88.58  E-value=0.32  Score=40.19  Aligned_cols=26  Identities=27%  Similarity=0.273  Sum_probs=22.5

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ...+|.|.|+.+||||++.+.|.+.+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34589999999999999999998764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=88.49  E-value=0.28  Score=43.52  Aligned_cols=24  Identities=38%  Similarity=0.390  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|+|.|+.++|||++++.|...+
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999998654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=88.48  E-value=0.26  Score=46.43  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=23.9

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      =.||+++|+.++|||+|++.|..++..
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~l~~  183 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRLKN  183 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence            368999999999999999999988653

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=88.48  E-value=0.28  Score=40.64  Aligned_cols=36  Identities=22%  Similarity=0.207  Sum_probs=25.7

Q ss_pred             HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHH
Q psy5031          40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .+|+.++.- .+...  .++.|+|+.++|||+|+..++.
T Consensus         7 ~~LD~~l~G-gi~~G--~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A            7 KSLDSLLGG-GFAPG--VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             HHHHHHTTS-SBCTT--SEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHhhcC-CCcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence            456665531 12222  3788999999999999999986

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=88.47  E-value=0.3  Score=40.84  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=20.2

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .|.|.|+.+||||++++.|...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37789999999999999997764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=88.42  E-value=0.25  Score=40.36  Aligned_cols=25  Identities=20%  Similarity=0.061  Sum_probs=20.1

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|+.++|||+|+|+|++.
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4456789999999999999999754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=88.40  E-value=0.41  Score=38.30  Aligned_cols=27  Identities=15%  Similarity=0.101  Sum_probs=22.3

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+..-|.|+|+.++|||+|+|++.+.
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHHHT
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHhh
Confidence            456677899999999999999877654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=88.34  E-value=0.32  Score=41.42  Aligned_cols=27  Identities=30%  Similarity=0.459  Sum_probs=23.8

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ..-.+|+|+|..+||||++.+.|...+
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence            456889999999999999999998764

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=88.32  E-value=1.2  Score=46.16  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=29.3

Q ss_pred             CHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031          38 DYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        38 n~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +.+-+..+..    ....+--|+|+|...+|||+|+|+|+.+
T Consensus         5 ~~~~~~~~m~----~~~~~rnI~IiG~~~~GKTTL~~~Ll~~   42 (842)
T 1n0u_A            5 TVDQMRSLMD----KVTNVRNMSVIAHVDHGKSTLTDSLVQR   42 (842)
T ss_dssp             CHHHHHHHHH----CGGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             CHHHHHHHhh----CcccccEEEEECCCCCCHHHHHHHHHHh
Confidence            4556665543    2346778999999999999999999876

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=88.21  E-value=0.19  Score=40.82  Aligned_cols=24  Identities=25%  Similarity=0.191  Sum_probs=20.0

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -.-|.|+|..++|||+|+|+|...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            345779999999999999999644

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=88.21  E-value=0.27  Score=41.33  Aligned_cols=25  Identities=20%  Similarity=0.306  Sum_probs=20.7

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|+..+|||.|+|+|.+.
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcC
Confidence            3456779999999999999999764

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=88.14  E-value=0.5  Score=46.54  Aligned_cols=25  Identities=12%  Similarity=0.187  Sum_probs=21.8

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+.-|+|+|...+|||+|+|+|+.+
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~   36 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLF   36 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhh
Confidence            4667889999999999999999864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=88.04  E-value=0.44  Score=39.26  Aligned_cols=26  Identities=15%  Similarity=0.129  Sum_probs=21.8

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+-.-|.|+|+.++|||.|+|+|...
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            34566889999999999999999754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=88.03  E-value=0.25  Score=41.05  Aligned_cols=44  Identities=14%  Similarity=0.129  Sum_probs=30.2

Q ss_pred             eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .++++++.+.....  ..+-..|-|+|+.+||||+|+..+.+.+..
T Consensus        35 ~~~~~~~~l~~~~~--~~~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           35 GNDELIGALKSAAS--GDGVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             CCHHHHHHHHHHHH--TCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45677776544211  112345668999999999999999987653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=87.90  E-value=0.34  Score=40.18  Aligned_cols=23  Identities=22%  Similarity=0.068  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|.|+.+||||++.+.|...+
T Consensus        22 ~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           22 RVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999998865

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=87.90  E-value=0.25  Score=40.02  Aligned_cols=24  Identities=21%  Similarity=0.040  Sum_probs=21.2

Q ss_pred             EEEecccccChhHHHHHHHHhhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      |-+.|+.++|||+|+..+.+.+.+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~~~   64 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDLFG   64 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhc
Confidence            789999999999999999987643

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=87.89  E-value=0.18  Score=47.24  Aligned_cols=24  Identities=17%  Similarity=0.409  Sum_probs=21.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+||+.|++...
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Confidence            688999999999999999987643

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=87.88  E-value=0.28  Score=39.86  Aligned_cols=24  Identities=21%  Similarity=0.065  Sum_probs=20.8

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|.|+|+.++|||++++.|...+
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHh
Confidence            356789999999999999998765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=87.87  E-value=0.28  Score=40.59  Aligned_cols=24  Identities=25%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             ceEEEEEEecccccChhHHHHHHH
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll   77 (281)
                      .+..-|.|+|+.++|||+|+|+|.
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHH
Confidence            456788999999999999999985

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=87.85  E-value=0.28  Score=39.84  Aligned_cols=25  Identities=28%  Similarity=0.284  Sum_probs=21.0

Q ss_pred             ceEEEEEEecccccChhHHHHHHHH
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .+-.-|.|+|+.++|||+|+|+|..
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            3456788999999999999999953

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=87.82  E-value=0.32  Score=40.93  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=26.3

Q ss_pred             HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031          40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..|+.++.- .+.  +=.++.|+|+.++|||+|+..++..
T Consensus        11 ~~LD~~l~g-gi~--~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           11 KELDKLLQG-GIE--TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             HHHHHHTTT-SEE--TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hHHHHhhcC-CCc--CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            467766531 111  1137889999999999999999875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=87.82  E-value=0.17  Score=47.49  Aligned_cols=24  Identities=13%  Similarity=0.184  Sum_probs=21.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+||+.|++...
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            688999999999999999987643

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=87.81  E-value=0.14  Score=47.10  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .--|+|+|...+|||+|+|+|++.
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~   54 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGR   54 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTS
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCC
Confidence            447899999999999999999654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=87.80  E-value=0.31  Score=43.15  Aligned_cols=37  Identities=16%  Similarity=0.103  Sum_probs=27.3

Q ss_pred             HHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          41 ALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        41 al~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|+.+..  .+...  .++.|+|+.++|||+|++.|+..+.
T Consensus        24 ~Ld~i~~--~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           24 GINDKTL--GARGG--EVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             THHHHHC--SBCTT--CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhc--CCCCC--eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5666653  23322  3788999999999999999998754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=87.80  E-value=0.24  Score=47.03  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=21.2

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..-|+|+|+.++|||+|+|+|++.
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CceEEEECCCCCCHHHHHHHHhCC
Confidence            357889999999999999999865

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=87.79  E-value=0.3  Score=48.40  Aligned_cols=27  Identities=22%  Similarity=0.229  Sum_probs=23.7

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      =.||+|+|+.++|||+|++.|++++..
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll~~  319 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQFEQ  319 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHhhh
Confidence            358999999999999999999988653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=87.78  E-value=0.19  Score=40.64  Aligned_cols=23  Identities=26%  Similarity=0.203  Sum_probs=19.6

Q ss_pred             eEEEEEEecccccChhHHHHHHH
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll   77 (281)
                      +-.-|.|+|+.++|||+|+|+|.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            44558899999999999999984

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=87.72  E-value=0.28  Score=40.68  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=20.5

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|..++|||+|+|++...
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhC
Confidence            3456689999999999999999854

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=87.72  E-value=0.28  Score=39.59  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=16.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|.|+.+||||++.+.|...+
T Consensus         7 ~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            7 IIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             EEEEECCC----CHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            78899999999999999998765

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=87.67  E-value=0.27  Score=41.15  Aligned_cols=25  Identities=28%  Similarity=0.175  Sum_probs=20.5

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-.-|.|+|+.++|||+|+|+|...
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            3456789999999999999999753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=87.62  E-value=0.15  Score=47.16  Aligned_cols=22  Identities=32%  Similarity=0.253  Sum_probs=19.2

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++++|+.++|||+|+|.|+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHhccc
Confidence            7889999999999999999654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=87.55  E-value=0.44  Score=40.81  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=26.3

Q ss_pred             CCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ..+...++.+.|.-++|||+|++.|+.++.
T Consensus        10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             TTCCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCcceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            466788999999999999999999997764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=87.52  E-value=0.24  Score=44.89  Aligned_cols=20  Identities=35%  Similarity=0.346  Sum_probs=17.7

Q ss_pred             EEecccccChhHHHHHHHHh
Q psy5031          60 SVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        60 sI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +|+|+.++|||+|+|.|...
T Consensus        22 ~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           22 MVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEETTSSHHHHHHHHHC-
T ss_pred             EEECCCCCCHHHHHHHHhCC
Confidence            89999999999999998754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=87.52  E-value=0.26  Score=46.96  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+||+.|++..
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            68899999999999999998754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=87.49  E-value=0.25  Score=48.88  Aligned_cols=25  Identities=32%  Similarity=0.550  Sum_probs=22.0

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..-.|+|+|...+|||+|+|+|++.
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~   88 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQ   88 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=87.42  E-value=0.26  Score=43.59  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=19.3

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .|+++|...+|||+|+|+|.+.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4788999999999999999754

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=87.37  E-value=0.96  Score=45.89  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=23.3

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+..|+|+|...+|||+|+|+|+.+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~   35 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYY   35 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHh
Confidence            46788999999999999999999865

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=87.25  E-value=0.26  Score=43.73  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .|+++|...+|||+|+|+|.+.
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5788999999999999999754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=87.22  E-value=0.34  Score=41.41  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |-|+||.++||++|++.|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999876

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=87.19  E-value=0.35  Score=43.96  Aligned_cols=29  Identities=17%  Similarity=0.242  Sum_probs=24.4

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ....+|+|+|+.++|||+|++.+.+.+..
T Consensus        50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~   78 (412)
T 1w5s_A           50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSE   78 (412)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence            45777788999999999999999987643

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=87.17  E-value=0.25  Score=47.94  Aligned_cols=25  Identities=28%  Similarity=0.275  Sum_probs=22.0

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +|+|+|+.++|||+|++.|+++...
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~~p  164 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYALK  164 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCcccc
Confidence            5788899999999999999998644

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=87.16  E-value=0.34  Score=39.80  Aligned_cols=24  Identities=25%  Similarity=0.227  Sum_probs=20.4

Q ss_pred             ceEEEEEEecccccChhHHHHHHH
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll   77 (281)
                      .+-.-|.|+|+.++|||.|+|+|.
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            344568899999999999999995

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=87.08  E-value=0.26  Score=40.76  Aligned_cols=21  Identities=29%  Similarity=0.311  Sum_probs=18.4

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      -|.++|+.++|||+|+|+|.+
T Consensus        27 ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           27 KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEETTSSHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            467999999999999999953

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=87.07  E-value=0.25  Score=48.86  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=21.7

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -|++++||.++|||+||+.|++.+
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            589999999999999999998754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=87.04  E-value=2  Score=43.75  Aligned_cols=26  Identities=15%  Similarity=0.258  Sum_probs=22.3

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..+-.|+|+|...+|||+|+++|+.+
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~   33 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFY   33 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHh
Confidence            34667899999999999999999864

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=87.04  E-value=0.32  Score=46.39  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.5

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -.|+|+|+.++|||+|+|.|.+.
T Consensus        21 ~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           21 LKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            46889999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=87.02  E-value=0.3  Score=48.17  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=87.02  E-value=0.4  Score=41.11  Aligned_cols=25  Identities=16%  Similarity=0.376  Sum_probs=21.7

Q ss_pred             EEEEEEecccccChhHHHHHHHHhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -.+|+|+|+.++|||++++.|...+
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3479999999999999999998754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=86.99  E-value=0.35  Score=39.29  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +..|+|+.++|||+|+..|..-+
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHH
Confidence            77899999999999999997654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=86.98  E-value=0.36  Score=41.53  Aligned_cols=22  Identities=23%  Similarity=0.172  Sum_probs=20.3

Q ss_pred             EEEecccccChhHHHHHHHHhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |.++||.+||||+|++.+.+.+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=86.96  E-value=0.37  Score=42.42  Aligned_cols=24  Identities=25%  Similarity=0.141  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .++.|+|+.++|||+|+.+++..+
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            378899999999999999998764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=86.82  E-value=0.79  Score=43.99  Aligned_cols=24  Identities=29%  Similarity=0.318  Sum_probs=20.3

Q ss_pred             eEEEEEEecccccChhHHHHHHHH
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      ...-|+|+|..++|||+|+|+|+.
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~~   56 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALVG   56 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHc
Confidence            345688999999999999999854

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=86.78  E-value=0.38  Score=40.87  Aligned_cols=24  Identities=17%  Similarity=0.159  Sum_probs=21.0

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|.|.|+.+||||++++.|...+
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            368899999999999999998764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=86.78  E-value=0.22  Score=49.77  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.5

Q ss_pred             EEEEEEecccccChhHHHHHHHHhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +-.|+|+|+.++|||+|||.|++..
T Consensus        45 lp~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           45 LPAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CCeEEEECCCCChHHHHHHHHhCCC
Confidence            3349999999999999999998753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=86.77  E-value=0.41  Score=40.05  Aligned_cols=23  Identities=13%  Similarity=0.062  Sum_probs=20.1

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .|.|.|+.+||||++++.|...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37789999999999999997764

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=86.75  E-value=0.98  Score=45.34  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=17.8

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+--|+|+|...+|||+|+++|+.+
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~   27 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQI   27 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3566899999999999999999865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=86.74  E-value=0.43  Score=40.12  Aligned_cols=25  Identities=24%  Similarity=0.170  Sum_probs=22.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+|.|.|+.++|||++++.|.+.+.
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4788899999999999999998865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=86.72  E-value=0.43  Score=39.32  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=20.4

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +|.++|+.+||||++.+.|.+.
T Consensus        12 ~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           12 NILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6889999999999999999887

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=86.71  E-value=0.89  Score=40.80  Aligned_cols=24  Identities=17%  Similarity=0.176  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|-++|+.++|||+|...|+..+
T Consensus        34 ~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            477799999999999999998764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=86.70  E-value=0.58  Score=41.93  Aligned_cols=46  Identities=13%  Similarity=-0.026  Sum_probs=32.4

Q ss_pred             EEeCHHHHHHHHcccCC-CCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          35 FILDYEALERILLQDHV-KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        35 l~ln~eal~~il~~~~~-~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +.-++++++.+...  + .......+-++||.++|||+|++.+.+.+.+
T Consensus        16 ~vg~~~~~~~l~~~--~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~   62 (354)
T 1sxj_E           16 LSHNEELTNFLKSL--SDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG   62 (354)
T ss_dssp             CCSCHHHHHHHHTT--TTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred             hcCCHHHHHHHHHH--HhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence            44567777766542  2 2222323789999999999999999997654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=86.66  E-value=1  Score=45.30  Aligned_cols=25  Identities=36%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+--|+|+|...+|||+|+|+|+.+
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~   29 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEY   29 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4667899999999999999999865

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=86.63  E-value=0.26  Score=47.39  Aligned_cols=20  Identities=35%  Similarity=0.346  Sum_probs=18.6

Q ss_pred             EEecccccChhHHHHHHHHh
Q psy5031          60 SVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        60 sI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +|+|+.++|||+|+|.|++.
T Consensus        35 ~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           35 MVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             EEECCTTSSHHHHHHHHTTC
T ss_pred             EEECCCCCcHHHHHHHHhCC
Confidence            99999999999999999765

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=86.54  E-value=0.24  Score=48.70  Aligned_cols=42  Identities=19%  Similarity=0.300  Sum_probs=29.1

Q ss_pred             eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +.+++++.+-..  +....  +|.|+|+.+||||+|||.|++.+..
T Consensus       245 ~~~~~l~~l~~~--v~~g~--~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          245 VPSGVLAYLWLA--IEHKF--SAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             SCHHHHHHHHHH--HHTTC--CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CCHHHHHHHHHH--HhCCC--EEEEECCCCCCHHHHHHHHHhhCCC
Confidence            456666654331  12222  3789999999999999999987643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=86.51  E-value=0.13  Score=42.82  Aligned_cols=24  Identities=17%  Similarity=0.200  Sum_probs=20.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHH
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +..-|.|+|..++|||+|+|+|+.
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            445677999999999999999864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=86.46  E-value=0.18  Score=48.36  Aligned_cols=24  Identities=33%  Similarity=0.350  Sum_probs=21.0

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .++|+++|+..+|||+|||.|...
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            567999999999999999999643

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=86.37  E-value=0.32  Score=48.00  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=21.6

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+++|+|+.++|||+|++.|++...
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3688999999999999999988643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=86.34  E-value=0.31  Score=43.61  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=20.1

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..|+++|...+|||+|+|+|.+.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            36889999999999999999753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=86.21  E-value=0.34  Score=48.69  Aligned_cols=24  Identities=29%  Similarity=0.308  Sum_probs=21.5

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+||+.|.+.+.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            789999999999999999987643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=86.18  E-value=0.51  Score=40.38  Aligned_cols=25  Identities=24%  Similarity=0.223  Sum_probs=21.5

Q ss_pred             ceEEEEEEecccccChhHHHHHHHH
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .+..-|.|+|..+.|||.|+|++..
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3556789999999999999999963

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=86.10  E-value=0.5  Score=41.70  Aligned_cols=24  Identities=33%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -..|+++|..++|||+|+|+|.+.
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            456889999999999999999753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=86.09  E-value=0.4  Score=45.23  Aligned_cols=21  Identities=38%  Similarity=0.447  Sum_probs=19.4

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|+..+|||+|+|.|.+.
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999876

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=85.91  E-value=0.41  Score=46.11  Aligned_cols=39  Identities=23%  Similarity=0.343  Sum_probs=28.7

Q ss_pred             CHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          38 DYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        38 n~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ...+|+.++.  --+++   +++|+|+.++|||+||+.|++...
T Consensus       144 g~~vld~vl~--i~~Gq---~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          144 GVRAINALLT--VGRGQ---RMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             SCHHHHHHSC--CBTTC---EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CceEEeeeEE--ecCCC---EEEEECCCCCCHHHHHHHHhcccC
Confidence            4568987732  22343   567788999999999999998853

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=85.73  E-value=0.43  Score=44.48  Aligned_cols=44  Identities=23%  Similarity=0.285  Sum_probs=31.3

Q ss_pred             ceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          33 HKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        33 ~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ..|.....|++.++.  --+++   +++|+|+.++|||+||+.|++...
T Consensus        53 ~~~~tg~~ald~ll~--i~~Gq---~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           53 QPFILGVRAIDGLLT--CGIGQ---RIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             SEECCSCHHHHHHSC--EETTC---EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             eecCCCCEEEEeeee--ecCCC---EEEEECCCCCCHHHHHHHHhcCCC
Confidence            344445678987742  11233   677889999999999999998854

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=85.67  E-value=0.52  Score=39.68  Aligned_cols=24  Identities=17%  Similarity=0.119  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|.+.|+.+||||++.+.|...+
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            368899999999999999998875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=85.65  E-value=0.31  Score=48.12  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+|++.|++...
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhhccC
Confidence            688999999999999999987643

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=85.65  E-value=0.55  Score=38.25  Aligned_cols=25  Identities=20%  Similarity=0.248  Sum_probs=21.9

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ++-|.|+.++|||+|+..+.+.+.+
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC
Confidence            6678999999999999999987654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=85.51  E-value=0.44  Score=46.79  Aligned_cols=26  Identities=19%  Similarity=0.202  Sum_probs=23.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+++|+||.++|||+||+.|.+.+..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p   55 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIP   55 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence            78999999999999999999987543

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=85.36  E-value=0.34  Score=48.10  Aligned_cols=24  Identities=25%  Similarity=0.574  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+++|+||.++|||+|++.|++..
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            378899999999999999998764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=85.27  E-value=0.49  Score=41.51  Aligned_cols=22  Identities=23%  Similarity=0.172  Sum_probs=20.3

Q ss_pred             EEEecccccChhHHHHHHHHhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |.++||.+||||+|++.+...+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHc
Confidence            7899999999999999998865

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=85.26  E-value=0.55  Score=41.80  Aligned_cols=29  Identities=17%  Similarity=0.270  Sum_probs=23.8

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+-..|.|+|+.|+|||+|++.+.+.+..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34457789999999999999999987643

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=85.16  E-value=0.55  Score=40.72  Aligned_cols=25  Identities=12%  Similarity=0.271  Sum_probs=22.5

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+|.|.|+.++|||++++.|...+.
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            5789999999999999999998864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=85.11  E-value=0.39  Score=43.41  Aligned_cols=43  Identities=16%  Similarity=0.090  Sum_probs=30.2

Q ss_pred             CHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          38 DYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        38 n~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ++++++.+...  +....+.-+-++||.++|||+|+..+.+.+.+
T Consensus        30 ~~~~~~~L~~~--i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           30 QNEVITTVRKF--VDEGKLPHLLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             CHHHHHHHHHH--HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHH--HhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence            46666655431  22233333778999999999999999998765

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=85.10  E-value=0.38  Score=48.86  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -..|+|+|.+.+|||+|+|.|++.
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~   92 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGE   92 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456889999999999999999854

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=84.89  E-value=0.56  Score=39.38  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=19.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ++.|+|+.++|||+|+.+++...
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            78889999999999988887653

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=85.12  E-value=0.18  Score=41.51  Aligned_cols=27  Identities=22%  Similarity=0.160  Sum_probs=21.9

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++-.-|.|+|+.++|||+|+|+|...
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            344556789999999999999999754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=84.80  E-value=0.7  Score=43.79  Aligned_cols=37  Identities=27%  Similarity=0.263  Sum_probs=26.2

Q ss_pred             HHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031          41 ALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        41 al~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .++.++.+  ...++..-|+|+|....|||+|+|+|+..
T Consensus        11 ~i~~~l~~--~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~   47 (434)
T 1zun_B           11 DILAYLGQ--HERKEMLRFLTCGNVDDGKSTLIGRLLHD   47 (434)
T ss_dssp             -----CCS--TTSCEEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hHHHHHhh--cccCCceEEEEEECCCCCHHHHHHHHHhh
Confidence            34444442  24567788999999999999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=84.74  E-value=0.38  Score=48.30  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|.+.+
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            378999999999999999997654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=84.74  E-value=0.58  Score=41.03  Aligned_cols=30  Identities=17%  Similarity=0.063  Sum_probs=25.9

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ++|...|-++||.+||||+|+..+.+.+.+
T Consensus        44 ~~~~~~~ll~G~~GtGKt~la~~la~~~~~   73 (311)
T 4fcw_A           44 NRPIGSFLFLGPTGVGKTELAKTLAATLFD   73 (311)
T ss_dssp             TSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence            456778899999999999999999988754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=84.72  E-value=0.45  Score=46.85  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=21.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+|+.++|||+||+.|.+.+
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=84.71  E-value=0.56  Score=43.45  Aligned_cols=41  Identities=22%  Similarity=0.328  Sum_probs=29.4

Q ss_pred             eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .--..|+.+|.- .+  .+=.++.|+|+.++|||+|+++++...
T Consensus       115 TG~~~LD~lL~g-gi--~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          115 TGSKSLDKLLGG-GI--ETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             CSCHHHHHHHTS-SE--ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCHHHHHHhcC-CC--CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            334567776631 11  123688999999999999999998764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=84.68  E-value=0.47  Score=40.03  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=20.9

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|.|.|+.++|||++.+.|...+.
T Consensus         7 ~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            7 KVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            577899999999999999988753

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=84.68  E-value=0.4  Score=43.63  Aligned_cols=29  Identities=21%  Similarity=0.173  Sum_probs=24.4

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+...+.++||.++|||+|++.+.+.+.+
T Consensus        49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~   77 (334)
T 1in4_A           49 EVLDHVLLAGPPGLGKTTLAHIIASELQT   77 (334)
T ss_dssp             CCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            34567889999999999999999988643

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=84.48  E-value=0.46  Score=47.65  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|++.+
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999998764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=84.48  E-value=0.55  Score=41.84  Aligned_cols=23  Identities=26%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             EEEecccccChhHHHHHHHHhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      |.++||.+||||+|++.+...+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHcC
Confidence            88999999999999999987643

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=84.47  E-value=0.67  Score=40.60  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=22.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+|.++|+.++|||++++.|...+.
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999998753

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=84.43  E-value=0.5  Score=44.65  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=19.5

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|+|+|...+|||+|+|+|.+.
T Consensus         4 kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            4 KCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3789999999999999999864

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=84.40  E-value=0.64  Score=45.76  Aligned_cols=28  Identities=21%  Similarity=0.190  Sum_probs=23.7

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+..+|+|+|+.++|||+|+|.|+.++.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5677999999999999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=84.31  E-value=0.41  Score=47.31  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.|.+.+
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999997654

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=84.29  E-value=0.49  Score=42.29  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.9

Q ss_pred             EEEEEEecccccChhHHHHHHHH
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .-+|+|+|+.+||||++++.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999984

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=84.10  E-value=0.67  Score=39.51  Aligned_cols=23  Identities=13%  Similarity=0.086  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .|.+.|+.+||||++++.|...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=84.08  E-value=0.51  Score=45.73  Aligned_cols=22  Identities=32%  Similarity=0.315  Sum_probs=19.9

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|+|+|+..+|||+|+|+|++.
T Consensus       226 kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          226 KVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            3789999999999999999876

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=84.04  E-value=0.55  Score=39.23  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|.|+.++|||++...|.+.+
T Consensus         5 ~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            5 NIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            68899999999999999998754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=83.85  E-value=0.55  Score=41.79  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +|.|+|+.++|||++++.|.+.+
T Consensus        50 ~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           50 SMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            67889999999999999998854

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=83.83  E-value=0.67  Score=38.92  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=20.3

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .|.|.|+.+||||++++.|...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37889999999999999998864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=83.66  E-value=0.64  Score=42.20  Aligned_cols=25  Identities=20%  Similarity=0.122  Sum_probs=22.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .||+++|+.++|||+++..|...+.
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4888999999999999999998764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=83.61  E-value=0.69  Score=38.13  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .|-+.|+.+||||+|+..+...+.
T Consensus        56 ~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           56 GLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            456889999999999999988753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=83.49  E-value=0.7  Score=39.06  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .|.+.|+.+||||++.+.|...+
T Consensus         7 ~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            7 NLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999998865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=83.46  E-value=0.54  Score=47.23  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=21.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -+++|+|+.++|||+||+.|.+.+.
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCC
Confidence            4699999999999999999987643

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=83.39  E-value=0.8  Score=41.95  Aligned_cols=28  Identities=21%  Similarity=0.201  Sum_probs=24.4

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+-.||.|+|+.++|||+++..|+..+.
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence            3457999999999999999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=83.36  E-value=0.54  Score=44.58  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .|+|+|....|||+|+|+|.+.
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~   24 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKK   24 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=83.20  E-value=0.7  Score=40.64  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=26.8

Q ss_pred             HHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          39 YEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        39 ~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ++.++.+..   +..   .+|.|.|+.|+|||+|++.+.+.+
T Consensus        19 ~~el~~L~~---l~~---~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           19 EKEIEKLKG---LRA---PITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             HHHHHHHHH---TCS---SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---hcC---CcEEEECCCCCCHHHHHHHHHHhc
Confidence            445555432   333   488899999999999999998764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=83.05  E-value=0.69  Score=39.65  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=22.0

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+|.|.|.-++|||++++.|.+.+.
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3688999999999999999998864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=82.99  E-value=0.78  Score=41.15  Aligned_cols=25  Identities=20%  Similarity=0.159  Sum_probs=21.7

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+.|+|+.++|||+|++.+.+.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~   70 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKD   70 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhh
Confidence            5778999999999999999987643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=82.93  E-value=0.62  Score=44.39  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=21.2

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .-.|+|+|..++|||+|+|+|++.
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            347899999999999999999864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=82.92  E-value=0.37  Score=47.81  Aligned_cols=24  Identities=33%  Similarity=0.594  Sum_probs=21.1

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+|+.++|||+|++.|++...
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcc
Confidence            688999999999999999987643

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=82.86  E-value=0.53  Score=41.05  Aligned_cols=26  Identities=31%  Similarity=0.281  Sum_probs=20.7

Q ss_pred             CceEEEEEEeccc---------ccChhHHHHHHHH
Q psy5031          53 DKHVVVVSVAGAF---------RKGKSFLLDFLLR   78 (281)
Q Consensus        53 ~~pVaVVsI~G~~---------RtGKSfLLN~Ll~   78 (281)
                      ..+-.-|.|+|..         ++|||.|+|+|.+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            3344557788888         9999999999975

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=82.83  E-value=0.31  Score=48.11  Aligned_cols=24  Identities=29%  Similarity=0.540  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++|+||.++|||+|++.|++...
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            688999999999999999987643

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=82.80  E-value=0.51  Score=44.76  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=18.6

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|...+|||+|+|+|.+.
T Consensus         3 I~ivG~pnvGKSTL~n~L~~~   23 (397)
T 1wxq_A            3 IGVVGKPNVGKSTFFSAATLV   23 (397)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            789999999999999999754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=82.72  E-value=0.81  Score=39.72  Aligned_cols=24  Identities=21%  Similarity=-0.086  Sum_probs=21.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+|.|.|+.+||||++..+|...+
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            478899999999999999998754

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=82.68  E-value=0.55  Score=44.96  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=18.9

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|+|+|+..+|||+|+|.|.+.
T Consensus        24 kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           24 KIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CEEEECCSSSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999999754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=82.59  E-value=0.72  Score=43.64  Aligned_cols=24  Identities=25%  Similarity=0.229  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+|+|+||.++|||+|++.|.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            378899999999999999999764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=82.57  E-value=0.77  Score=43.11  Aligned_cols=26  Identities=19%  Similarity=0.186  Sum_probs=23.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      -+|.|+||..||||+|...|...+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~   33 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNG   33 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCC
Confidence            37999999999999999999988654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=82.55  E-value=0.8  Score=40.25  Aligned_cols=23  Identities=35%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+|.|.|+-|+|||+|++.+++.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHH
Confidence            47888999999999999999875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=82.50  E-value=0.65  Score=43.96  Aligned_cols=23  Identities=26%  Similarity=0.314  Sum_probs=20.4

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..|+|+|....|||+|+|+|.+.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=82.31  E-value=0.36  Score=39.58  Aligned_cols=25  Identities=24%  Similarity=0.169  Sum_probs=21.1

Q ss_pred             ceEEEEEEecccccChhHHHHHHHH
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .+..-|.|+|+.++|||+|+|+|+.
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~   55 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFAD   55 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            3566778999999999999999853

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=82.25  E-value=0.76  Score=42.49  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=20.1

Q ss_pred             EEEecccccChhHHHHHHHHhhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +.|+|+.++|||+|++.++..+..
T Consensus        38 ~~i~G~~G~GKs~~~~~~~~~~~~   61 (392)
T 4ag6_A           38 WTILAKPGAGKSFTAKMLLLREYM   61 (392)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             eEEEcCCCCCHHHHHHHHHHHHHH
Confidence            567899999999999999986543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=82.18  E-value=0.62  Score=41.49  Aligned_cols=22  Identities=27%  Similarity=0.288  Sum_probs=18.6

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.++|..++|||+|+|.|.+.
T Consensus       101 ~v~~vG~~~vGKSslin~l~~~  122 (262)
T 3cnl_A          101 RVLIVGVPNTGKSTIINKLKGK  122 (262)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             heEEeCCCCCCHHHHHHHHhcc
Confidence            4677888999999999999754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=82.11  E-value=1.9  Score=33.15  Aligned_cols=19  Identities=37%  Similarity=0.329  Sum_probs=16.1

Q ss_pred             cchhhccCchhHHHHHHhh
Q psy5031         133 KVSAFRKGKSFLLDFLLRY  151 (281)
Q Consensus       133 ~~~~~r~gkS~Lln~l~~~  151 (281)
                      .+|.-..|||.|+|.|.+.
T Consensus         6 v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            6 IVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EECCTTSSHHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHhCC
Confidence            4678889999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=81.95  E-value=0.92  Score=38.74  Aligned_cols=23  Identities=17%  Similarity=0.094  Sum_probs=20.8

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .|.+.|+.+||||++.+.|...+
T Consensus        18 ~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           18 RAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58889999999999999998875

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=81.88  E-value=0.77  Score=42.86  Aligned_cols=22  Identities=27%  Similarity=0.375  Sum_probs=19.2

Q ss_pred             EEEecccccChhHHHHHHHHhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |.++|..++|||+|+|.|++..
T Consensus       165 i~~vG~~nvGKStliN~L~~~~  186 (369)
T 3ec1_A          165 VYVVGCTNVGKSTFINRIIEEA  186 (369)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCchHHHHHHHHhhc
Confidence            5678999999999999999863

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=81.83  E-value=0.72  Score=41.55  Aligned_cols=22  Identities=18%  Similarity=0.243  Sum_probs=19.0

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.++|..++|||.|+|+|+..
T Consensus         5 KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            5 KLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEECCTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3678999999999999998754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=81.82  E-value=0.37  Score=44.83  Aligned_cols=23  Identities=30%  Similarity=0.309  Sum_probs=20.7

Q ss_pred             EEEEEEecccccChhHHHHHHHH
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      ++-|+++|...+|||+|+|+|..
T Consensus       158 la~V~lvG~~nvGKSTLln~L~~  180 (342)
T 1lnz_A          158 LADVGLVGFPSVGKSTLLSVVSS  180 (342)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEE
T ss_pred             cCeeeeeCCCCCCHHHHHHHHHc
Confidence            66799999999999999999854

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=81.60  E-value=0.45  Score=47.65  Aligned_cols=20  Identities=40%  Similarity=0.522  Sum_probs=18.0

Q ss_pred             EEEEecccccChhHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll   77 (281)
                      +++|+||.++|||+|+|.++
T Consensus       350 ~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          350 FVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             EEEEECSTTSSHHHHHTTTH
T ss_pred             EEEEEeeCCCCHHHHHHHHH
Confidence            68999999999999998765

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=81.40  E-value=0.89  Score=39.09  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.4

Q ss_pred             EEEecccccChhHHHHHHHHhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      |-++|+.+||||+|+..+.+.+.
T Consensus        48 vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           48 VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECcCCCCHHHHHHHHHHHcC
Confidence            66999999999999999988754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=81.31  E-value=3.2  Score=33.21  Aligned_cols=19  Identities=21%  Similarity=0.218  Sum_probs=16.5

Q ss_pred             cchhhccCchhHHHHHHhh
Q psy5031         133 KVSAFRKGKSFLLDFLLRY  151 (281)
Q Consensus       133 ~~~~~r~gkS~Lln~l~~~  151 (281)
                      .+|.-..|||.|+|.|++.
T Consensus        28 v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           28 LAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEBTTSSHHHHHHHHHTC
T ss_pred             EECCCCCCHHHHHHHHhCC
Confidence            5788999999999999774

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=81.23  E-value=0.94  Score=38.50  Aligned_cols=24  Identities=17%  Similarity=0.358  Sum_probs=22.0

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ||+|.|+++||||++...|...|.
T Consensus         8 iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            8 IIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhC
Confidence            799999999999999999998754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=81.19  E-value=1.8  Score=39.78  Aligned_cols=29  Identities=17%  Similarity=0.233  Sum_probs=24.8

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+-.||+|+|+.++|||+++..|...+..
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~  131 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAE  131 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45578999999999999999999987643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=81.11  E-value=0.74  Score=41.10  Aligned_cols=26  Identities=19%  Similarity=0.167  Sum_probs=21.7

Q ss_pred             EEEEEEecccccChhHHHHHHHHhhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ...+-++||.++|||+|+..+.+.+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            34566889999999999999998764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=81.08  E-value=0.77  Score=44.60  Aligned_cols=36  Identities=17%  Similarity=0.093  Sum_probs=24.7

Q ss_pred             CHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHH
Q psy5031          38 DYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFL   76 (281)
Q Consensus        38 n~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~L   76 (281)
                      ...+|+.+..- .+.  +=.+++|+|+.++|||+|++.|
T Consensus        24 g~~~Ld~i~~G-~i~--~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           24 MIEGFDDISHG-GLP--IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             CCTTHHHHTTS-SEE--TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CchhHHHhcCC-CCC--CCeEEEEEcCCCCCHHHHHHHH
Confidence            34577776530 111  1137888999999999999996

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=80.35  E-value=0.84  Score=43.88  Aligned_cols=28  Identities=29%  Similarity=0.361  Sum_probs=24.0

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+..+|+|+|+.++|||++++.|..++.
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999998764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=80.26  E-value=1.1  Score=36.34  Aligned_cols=23  Identities=35%  Similarity=0.388  Sum_probs=19.9

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +..|+||.++|||.|+..|.--+
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999986544

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=80.22  E-value=0.87  Score=43.36  Aligned_cols=41  Identities=27%  Similarity=0.277  Sum_probs=27.2

Q ss_pred             EeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031          36 ILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        36 ~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..--..|..+|.- -+.  +=.++.|+|+.++|||+|+.+|+-.
T Consensus       161 ~TG~~~LD~lLgG-GI~--~Gei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          161 TTGSKNLDTLLGG-GVE--TGSITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             CCSCHHHHHHTTT-SEE--TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCChhHHHHhcC-CcC--CCcEEEEEcCCCCChHHHHHHHHHH
Confidence            3344567766521 111  1248899999999999999988643

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=80.10  E-value=1.1  Score=39.49  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=20.6

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+|.|+|+.+||||++.+.|.+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            36889999999999999999874

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=80.02  E-value=0.83  Score=43.23  Aligned_cols=24  Identities=29%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..-|+++|....|||+|+|+|++.
T Consensus       175 ~~ki~lvG~~nvGKSSLin~l~~~  198 (436)
T 2hjg_A          175 VIQFCLIGRPNVGKSSLVNAMLGE  198 (436)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCC
Confidence            346789999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d1f5na2	277	c.37.1.8 (A:7-283) Interferon-induced guanylate-bi	5e-23
d1f5na2	277	c.37.1.8 (A:7-283) Interferon-induced guanylate-bi	2e-12

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.2 bits (231), Expect = 5e-23
 Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 26/132 (19%)

Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
            +R GKS+L++ L                          GFS     +  T GI MW   
Sbjct: 40  LYRTGKSYLMNKLAGKKK---------------------GFSLGSTVQSHTKGIWMWCVP 78

Query: 196 YIATLPTGEKAAVILLDTQGTFDSE-STVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQ 254
           +    P      ++LLDT+G  D E    ++ + +FAL+ +LSS  +YN    I +  + 
Sbjct: 79  H----PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMD 134

Query: 255 HLQLFTEYGRLA 266
            L   TE     
Sbjct: 135 QLYYVTELTHRI 146

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (155), Expect = 2e-12
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 26/100 (26%)

Query: 22  GAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81
           G + +++     + + + EAL+ +        + +VVV++ G +R GKS+L++ L     
Sbjct: 3   GPMCLIE-NTNGRLMANPEALKIL----SAITQPMVVVAIVGLYRTGKSYLMNKLAGKKK 57

Query: 82  FTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWS 121
                                GFS     +  T GI MW 
Sbjct: 58  ---------------------GFSLGSTVQSHTKGIWMWC 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	100.0
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.29
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.09
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.01
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.87
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.64
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.48
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.4
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.32
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.81
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.77
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.62
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.43
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.22
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.19
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.12
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	94.9
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.85
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.82
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	94.8
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	94.76
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.73
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.55
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.52
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.51
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.49
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	94.3
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.27
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.22
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.22
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.1
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.04
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	94.01
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.95
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.95
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.94
d1okkd2	207	GTPase domain of the signal recognition particle r	93.89
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	93.85
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.8
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.79
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.75
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.67
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	93.67
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.51
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.41
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.36
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.1
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	93.07
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	93.06
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.04
d1vmaa2	213	GTPase domain of the signal recognition particle r	93.01
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	92.99
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.93
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	92.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	92.91
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	92.74
d2qy9a2	211	GTPase domain of the signal recognition particle r	92.72
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	92.7
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.65
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	92.62
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	92.62
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	92.59
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.44
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	92.41
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	92.4
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	92.36
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	92.31
d2awna2	232	Maltose transport protein MalK, N-terminal domain	92.3
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	92.27
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	92.18
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.16
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	92.14
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	92.06
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.03
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.99
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	91.98
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	91.74
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	91.72
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.7
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	91.64
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	91.61
d1g2912	240	Maltose transport protein MalK, N-terminal domain	91.56
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.42
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	91.41
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	91.38
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.36
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.35
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	91.32
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.31
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.27
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.24
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	91.17
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	91.15
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	91.09
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.08
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	91.07
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	90.95
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	90.87
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	90.8
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	90.71
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	90.68
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	90.65
d1j8yf2	211	GTPase domain of the signal sequence recognition p	90.63
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	90.59
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	90.58
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	90.53
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.24
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	90.21
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	90.2
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	90.17
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	90.16
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	90.14
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	90.11
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	90.07
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	90.05
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	90.02
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	90.02
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	89.94
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	89.91
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	89.87
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	89.82
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	89.81
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	89.76
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	89.73
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	89.59
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	89.41
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	89.31
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	89.31
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	89.24
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	89.16
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	89.08
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	89.06
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	88.94
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.79
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	88.78
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	88.66
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	88.53
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	88.42
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.26
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	88.24
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	88.11
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	88.08
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	87.77
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	87.65
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	87.46
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	87.35
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	87.33
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	87.27
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	87.24
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	87.23
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	87.19
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	87.14
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	87.06
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	86.99
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	86.83
d1ls1a2	207	GTPase domain of the signal sequence recognition p	86.7
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	86.7
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	86.64
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	86.56
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	86.55
d1tuea_	205	Replication protein E1 helicase domain {Human papi	86.47
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	86.26
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	85.95
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	85.69
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	85.69
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	85.65
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	85.16
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	85.12
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	84.86
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	84.85
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.82
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	84.43
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	84.41
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	84.4
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	84.05
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	83.38
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	83.27
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	83.24
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	82.6
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	82.53
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	82.36
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	82.09
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	81.72
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	81.57
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	81.22
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	81.17
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	80.99
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	80.92
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	80.57
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	80.57
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	80.55
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	80.43
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	80.22

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-40  Score=300.98  Aligned_cols=159  Identities=27%  Similarity=0.430  Sum_probs=138.2

Q ss_pred             CCeeEEEEeCCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCC
Q psy5031          21 YGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVP  100 (281)
Q Consensus        21 ~~pvqLV~~~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~  100 (281)
                      +.|+|||. +++++|++|+||++.|..    .++||+||||+|++|||||||||+|++.                     
T Consensus         2 ~~p~~li~-~~~~~l~~~~e~l~~l~~----~~~~v~vvsi~G~~~sGKS~llN~l~~~---------------------   55 (277)
T d1f5na2           2 TGPMCLIE-NTNGRLMANPEALKILSA----ITQPMVVVAIVGLYRTGKSYLMNKLAGK---------------------   55 (277)
T ss_dssp             CSCEEEEE-EETTEEEECHHHHHHHHT----CCSBEEEEEEEEBTTSSHHHHHHHHTTC---------------------
T ss_pred             CCCeEEEE-cCCCeEEECHHHHHHHHc----CCCCEEEEEEECCCCCCHHHHHHHHcCC---------------------
Confidence            57999997 678999999999995532    4789999999999999999999999421                     


Q ss_pred             CCCcccCCCCcccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccCC
Q psy5031         101 LEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRG  180 (281)
Q Consensus       101 ~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~~  180 (281)
                                                                                              ..||.|++
T Consensus        56 ------------------------------------------------------------------------~~~f~~~~   63 (277)
T d1f5na2          56 ------------------------------------------------------------------------KKGFSLGS   63 (277)
T ss_dssp             ------------------------------------------------------------------------SSCSCCCC
T ss_pred             ------------------------------------------------------------------------CCCCccCC
Confidence                                                                                    25899999


Q ss_pred             CCCCcccceEeeecceeecCCCCCceEEEEEecCCCCCCCc-CcccchhhHHHHHhhhhhhhhccCCCCChhhhhHhHHH
Q psy5031         181 GSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES-TVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLF  259 (281)
Q Consensus       181 ~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~-s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~~L~l~  259 (281)
                      ++++||+|||||+.|+    +++++++|++|||||+.+.+. +..+|++||+|++||||++|||+.+.|++.++++|+++
T Consensus        64 ~~~~~T~Giw~~~~~~----~~~~~~~~~~lDteG~~~~~~~~~~~~~~i~~l~~llSs~~i~N~~~~~~~~~l~~L~~~  139 (277)
T d1f5na2          64 TVQSHTKGIWMWCVPH----PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYV  139 (277)
T ss_dssp             SSSCCCCSEEEEEEEC----SSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHH
T ss_pred             CCCCCCCceEEEEeec----cCCCCceEEEEecccccccccccchhHHHHHHHHHHHhCEEEEeccccCcHHHHHHHHHH
Confidence            9999999999999999    467788999999999999875 56689999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccC--------------CCCCcccccC
Q psy5031         260 TEYGRLALADTG--------------TKPFQRLQFL  281 (281)
Q Consensus       260 t~~a~~i~~~~~--------------~~pfq~L~fl  281 (281)
                      +++++.+.....              ..|||+|.|+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~v  175 (277)
T d1f5na2         140 TELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWT  175 (277)
T ss_dssp             HTHHHHCBSCCC-------CCGGGGHHHHCCEEEEE
T ss_pred             HHHHHHHHHhhcccccccccccchhhcccCCceEEE
Confidence            999998754332              2378888774

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.29  E-value=0.00063  Score=54.19  Aligned_cols=25  Identities=36%  Similarity=0.336  Sum_probs=21.6

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ....|+|+|..++|||+|+|+|++.
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3458999999999999999999743

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.09  E-value=0.0014  Score=56.28  Aligned_cols=25  Identities=20%  Similarity=0.207  Sum_probs=20.3

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .++- |.++|..++|||+|+|.|++.
T Consensus        31 ~~l~-I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLT-ILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEE-EEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcE-EEEECCCCCcHHHHHHHHhCC
Confidence            3454 558899999999999999754

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00036  Score=64.26  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=19.2

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      =|+|+|..++|||+|+|.|++.
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999753

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.87  E-value=0.002  Score=55.44  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|.+.+|||+|+|.|++.
T Consensus        29 ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTS
T ss_pred             EEEEcCCCCCHHHHHHHHhCC
Confidence            779999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.64  E-value=0.00099  Score=52.52  Aligned_cols=29  Identities=24%  Similarity=0.335  Sum_probs=25.1

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+|+ ||+|.|+.+||||+|+++|...+..
T Consensus        20 ~~~~-iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          20 AGRL-VLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             SSSE-EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCE-EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4566 8999999999999999999887654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.48  E-value=0.0026  Score=50.38  Aligned_cols=19  Identities=37%  Similarity=0.392  Sum_probs=17.9

Q ss_pred             EEEecccccChhHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll   77 (281)
                      |+++|...+|||+|+|+|.
T Consensus         4 VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8899999999999999995

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.00087  Score=51.69  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=23.1

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ||+|+|+.+||||+|+|.|++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            7999999999999999999998754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.32  E-value=0.002  Score=55.74  Aligned_cols=14  Identities=36%  Similarity=0.375  Sum_probs=11.6

Q ss_pred             EEEEecCCCCCCCc
Q psy5031         208 VILLDTQGTFDSES  221 (281)
Q Consensus       208 VlLlDTEG~~d~~~  221 (281)
                      +.|+||+|+.-+..
T Consensus       159 ~~l~DTPGi~~p~~  172 (273)
T d1puja_         159 LELLDTPGILWPKF  172 (273)
T ss_dssp             EEEEECCCCCCSCC
T ss_pred             eEEecCCCccccCC
Confidence            99999999976543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.81  E-value=0.0018  Score=52.11  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=24.5

Q ss_pred             CCCCceEEEEEEecccccChhHHHHHHHH
Q psy5031          50 HVKDKHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        50 ~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      ++.+.++-.|+|+|+.++|||+|+|.|.+
T Consensus        17 ~~p~~~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          17 QYPEGGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             HCCCCCCCEEEEECCCCCCHHHHHHHhcC
Confidence            34456677799999999999999999975

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.77  E-value=0.0027  Score=49.87  Aligned_cols=26  Identities=23%  Similarity=0.178  Sum_probs=24.0

Q ss_pred             EEEEecccccChhHHHHHHHHhhhhc
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNFT   83 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~~   83 (281)
                      |++|+|..+||||+|+++|+++|...
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~   28 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVRE   28 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            79999999999999999999998763

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.62  E-value=0.0032  Score=51.38  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=22.7

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ||.|.|+.++|||+|+++|++++..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~   26 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLED   26 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh
Confidence            8999999999999999999987643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.43  E-value=0.0028  Score=49.77  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+|+..+|||+|+|+|++.
T Consensus         1 a~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           1 ATVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0028  Score=55.62  Aligned_cols=21  Identities=33%  Similarity=0.522  Sum_probs=18.4

Q ss_pred             cccCCCCcccccceeeeeceE
Q psy5031         104 FSWRGGSERDTTGILMWSHVY  124 (281)
Q Consensus       104 f~~~~~~e~~t~gi~~~s~~~  124 (281)
                      |.|+.++++||+|||||+.|+
T Consensus        59 f~~~~~~~~~T~Giw~~~~~~   79 (277)
T d1f5na2          59 FSLGSTVQSHTKGIWMWCVPH   79 (277)
T ss_dssp             SCCCCSSSCCCCSEEEEEEEC
T ss_pred             CccCCCCCCCCCceEEEEeec
Confidence            467889999999999999884

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0056  Score=47.76  Aligned_cols=26  Identities=31%  Similarity=0.321  Sum_probs=23.0

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-++.|+++|....|||+|+|+|.+.
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0057  Score=49.72  Aligned_cols=24  Identities=21%  Similarity=0.409  Sum_probs=22.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ||+|.|+.+||||+|.+.|...+.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            799999999999999999988764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.90  E-value=0.0077  Score=46.77  Aligned_cols=24  Identities=17%  Similarity=0.283  Sum_probs=21.8

Q ss_pred             EEEecccccChhHHHHHHHHhhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      |.|+||.++|||+||+.+++.+..
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            789999999999999999998654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.85  E-value=0.0078  Score=45.66  Aligned_cols=24  Identities=21%  Similarity=0.200  Sum_probs=21.5

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|.|+|+.+||||+++++|.+.+.
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            577899999999999999998754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.82  E-value=0.013  Score=50.13  Aligned_cols=32  Identities=34%  Similarity=0.381  Sum_probs=22.0

Q ss_pred             HHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHH
Q psy5031          39 YEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        39 ~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      -++|..++.     ++   ...++|+.+.|||+|+|.|+.
T Consensus        86 ~~~L~~~l~-----~k---t~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          86 IEELKEYLK-----GK---ISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             HHHHHHHHS-----SS---EEEEECSTTSSHHHHHHHHST
T ss_pred             HhhHHHHhc-----CC---eEEEECCCCCCHHHHHHhhcc
Confidence            456665552     43   234678888999999999953

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.80  E-value=0.0067  Score=46.35  Aligned_cols=25  Identities=32%  Similarity=0.416  Sum_probs=21.7

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -.|.|.|+.+||||+|++.|...+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4578899999999999999998754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.76  E-value=0.019  Score=47.13  Aligned_cols=42  Identities=14%  Similarity=0.212  Sum_probs=31.3

Q ss_pred             HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ++++.++....-.++|.+|+ ++||.+||||+|+..|.+.+.+
T Consensus        17 ~~~~~~~~~~~~~~~P~~il-L~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          17 DNLEELIQGKKAVESPTAFL-LGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             HHHHHHHTTCCCCSSCEEEE-EECCTTSCTHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcccCCCCCEEEE-EECCCCCCHHHHHHHHHHHhhc
Confidence            45555655444457788755 9999999999999999887643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.73  E-value=0.0079  Score=45.06  Aligned_cols=21  Identities=29%  Similarity=0.286  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|+..+|||+|+|+|...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            678999999999999999764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.55  E-value=0.0069  Score=47.44  Aligned_cols=22  Identities=32%  Similarity=0.241  Sum_probs=19.4

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      =|+++|+.++|||+|+|+|.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999743

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.52  E-value=0.0094  Score=45.14  Aligned_cols=21  Identities=24%  Similarity=0.140  Sum_probs=18.9

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+++|..++|||+|+|++...
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999999754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.51  E-value=0.0042  Score=49.23  Aligned_cols=23  Identities=30%  Similarity=0.251  Sum_probs=20.0

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |=|+|+|+..+|||+|+|+|.+.
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.49  E-value=0.011  Score=45.36  Aligned_cols=25  Identities=20%  Similarity=0.194  Sum_probs=22.6

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ||.|.|+.++|||++++.|..++..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            7899999999999999999988754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.30  E-value=0.012  Score=46.50  Aligned_cols=26  Identities=31%  Similarity=0.672  Sum_probs=23.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .||.++|..+||||+|.++|.+++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~   28 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNF   28 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            37889999999999999999998754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.27  E-value=0.038  Score=44.21  Aligned_cols=20  Identities=30%  Similarity=0.220  Sum_probs=18.0

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.|+|+.++|||+|+|+|..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            67889999999999999964

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.22  E-value=0.012  Score=44.22  Aligned_cols=21  Identities=24%  Similarity=0.131  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||+|+|+|...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            569999999999999999765

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.22  E-value=0.056  Score=41.97  Aligned_cols=24  Identities=17%  Similarity=0.105  Sum_probs=20.3

Q ss_pred             EEEEEEecccccChhHHHHHHHHh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +--|.++|..++|||.|+|+|.+.
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcC
Confidence            345789999999999999999754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.011  Score=45.38  Aligned_cols=21  Identities=43%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+++|+..+|||+|+|+|.+.
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999999754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.04  E-value=0.012  Score=46.36  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=19.1

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|...+|||+|+|+|++.
T Consensus        11 V~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            789999999999999999754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.015  Score=44.22  Aligned_cols=24  Identities=21%  Similarity=0.185  Sum_probs=21.9

Q ss_pred             EEEecccccChhHHHHHHHHhhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      |-|.|+.+||||+|+..+++.+..
T Consensus         4 v~ItG~~GtGKTtl~~~i~~~l~~   27 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASEVLKS   27 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHH
Confidence            778899999999999999998765

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.95  E-value=0.011  Score=50.97  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=19.0

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|.+.+|||+|+|.|++.
T Consensus        27 ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             EEEEECSSSSHHHHHHHHHTS
T ss_pred             EEEEeCCCCCHHHHHHHHhCC
Confidence            678899999999999999864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.95  E-value=0.011  Score=47.01  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=19.5

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      -|||+|...+|||+|+|+|++
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            699999999999999999974

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.066  Score=41.55  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=19.0

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.++|..++|||.|+|+|...
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4778999999999999999753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=93.89  E-value=0.095  Score=43.81  Aligned_cols=57  Identities=26%  Similarity=0.237  Sum_probs=41.6

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCcccCCCCcccccceeeeeceEEeecCCcc
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGE  132 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~  132 (281)
                      ++| .||.++||.++||++.+=.|..++...                                |    .++.+|+     
T Consensus         4 ~~~-~vi~lvGptGvGKTTTiaKLA~~~~~~--------------------------------g----~kV~lit-----   41 (207)
T d1okkd2           4 PKG-RVVLVVGVNGVGKTTTIAKLGRYYQNL--------------------------------G----KKVMFCA-----   41 (207)
T ss_dssp             CSS-SEEEEECSTTSSHHHHHHHHHHHHHTT--------------------------------T----CCEEEEC-----
T ss_pred             CCC-EEEEEECCCCCCHHHHHHHHHHHHHHC--------------------------------C----CcEEEEE-----
Confidence            444 578889999999999999998775421                                1    1244443     


Q ss_pred             cchhhccCchhHHHHHHhhh
Q psy5031         133 KVSAFRKGKSFLLDFLLRYM  152 (281)
Q Consensus       133 ~~~~~r~gkS~Lln~l~~~~  152 (281)
                       .+-||.|-.-.|..+.+.+
T Consensus        42 -~Dt~R~gA~eQL~~~a~~l   60 (207)
T d1okkd2          42 -GDTFRAAGGTQLSEWGKRL   60 (207)
T ss_dssp             -CCCSSTTHHHHHHHHHHHH
T ss_pred             -eccccccchhhHhhccccc
Confidence             5789999988888887776

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.85  E-value=0.018  Score=43.45  Aligned_cols=23  Identities=17%  Similarity=0.137  Sum_probs=19.6

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ||-|+|+.+||||+|++.|++..
T Consensus         4 lIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            45589999999999999997653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.015  Score=51.94  Aligned_cols=30  Identities=20%  Similarity=0.155  Sum_probs=26.5

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ..+--+|+|.|+.++|||+|+|+|.+++..
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~   80 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR   80 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            346889999999999999999999988765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.79  E-value=0.017  Score=45.91  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .|.|+|+..+|||+|+|+|...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5788999999999999999754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.068  Score=41.42  Aligned_cols=22  Identities=27%  Similarity=0.169  Sum_probs=19.3

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      =|.|+|+.++|||.|+|+++..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999999753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.025  Score=44.38  Aligned_cols=20  Identities=20%  Similarity=0.252  Sum_probs=16.7

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.|+|+.++|||.|+|+++.
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            56779999999999999853

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.67  E-value=0.023  Score=43.16  Aligned_cols=29  Identities=17%  Similarity=0.194  Sum_probs=25.0

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +.=+||-++|+.++|||++...|.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34478999999999999999999988754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.51  E-value=0.02  Score=51.07  Aligned_cols=31  Identities=23%  Similarity=0.260  Sum_probs=27.2

Q ss_pred             CCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ...+.-+|+|.|+.++|||+|++.|.+++..
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~   77 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTA   77 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHhh
Confidence            3457889999999999999999999988665

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.039  Score=43.23  Aligned_cols=20  Identities=30%  Similarity=0.340  Sum_probs=17.8

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.++|..++|||.|+|++..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            66899999999999999863

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.1  Score=39.87  Aligned_cols=21  Identities=19%  Similarity=0.226  Sum_probs=18.0

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|...+|||.|+|++...
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567799999999999999743

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.18  Score=39.11  Aligned_cols=24  Identities=25%  Similarity=0.176  Sum_probs=19.9

Q ss_pred             eEEEEEEecccccChhHHHHHHHH
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +..=|.|+|..++|||.|+|++..
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHh
Confidence            345567999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=93.07  E-value=0.028  Score=42.73  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.4

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ||-|.|+.+||||++++.|.+.+.
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            677899999999999999998764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=93.06  E-value=0.027  Score=42.85  Aligned_cols=23  Identities=22%  Similarity=0.131  Sum_probs=19.9

Q ss_pred             EEEecccccChhHHHHHHHHhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      |.|+|+.+||||++++.|...+.
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            55889999999999999988753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.04  E-value=0.024  Score=45.53  Aligned_cols=21  Identities=33%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+..+|||+|+|+|+..
T Consensus         3 V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           3 VLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            788999999999999999764

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=93.01  E-value=0.13  Score=43.11  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .||..+||.++||++.+=.|..++.
T Consensus        12 ~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2          12 FVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5889999999999999988887754

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.99  E-value=0.04  Score=47.23  Aligned_cols=19  Identities=26%  Similarity=0.298  Sum_probs=17.7

Q ss_pred             cchhhccCchhHHHHHHhh
Q psy5031         133 KVSAFRKGKSFLLDFLLRY  151 (281)
Q Consensus       133 ~~~~~r~gkS~Lln~l~~~  151 (281)
                      ++|.|.+|||.|+|.|++.
T Consensus        29 VvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          29 VVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             EEECSSSSHHHHHHHHHTS
T ss_pred             EEeCCCCCHHHHHHHHhCC
Confidence            6899999999999999985

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.93  E-value=0.046  Score=44.97  Aligned_cols=26  Identities=27%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |--=|+|+|--.+|||+|+|+|+.+.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHh
Confidence            43357888999999999999998653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=92.92  E-value=0.019  Score=49.22  Aligned_cols=26  Identities=27%  Similarity=0.457  Sum_probs=22.2

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+|+|+|+.++|||+|++.|++.+..
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~~p   54 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFYQP   54 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            46888999999999999999886543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.91  E-value=0.02  Score=43.89  Aligned_cols=22  Identities=27%  Similarity=0.247  Sum_probs=18.6

Q ss_pred             EEEEEecccccChhHHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .=|.++|+.++|||+|+|+|.+
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3456999999999999999954

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=92.74  E-value=0.028  Score=44.61  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             EEEEEecccccChhHHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      -||+|+|..+||||++++.|-.
T Consensus         4 ~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999999855

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=92.72  E-value=0.12  Score=43.46  Aligned_cols=29  Identities=24%  Similarity=0.272  Sum_probs=23.9

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .++=.||.++||.++||++.+=.|..++.
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            33346899999999999999999987753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.70  E-value=0.03  Score=49.33  Aligned_cols=30  Identities=20%  Similarity=0.179  Sum_probs=24.8

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ++.=-||+|+|+++||||+|...|..++..
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~   53 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   53 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHHHH
Confidence            443469999999999999999999887644

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.65  E-value=0.016  Score=44.33  Aligned_cols=21  Identities=38%  Similarity=0.433  Sum_probs=19.2

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+++|...+|||+|+|+|.+.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999865

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.023  Score=48.79  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=21.4

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +|+|+|+.++|||+|++.|++.+..
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~~p   55 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFYIP   55 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCC
Confidence            5788999999999999999886543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.62  E-value=0.033  Score=46.22  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=21.1

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ||  |||+|...+|||+|+|+|+..
T Consensus         6 p~--IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PI--VSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CE--EEEECSTTSSHHHHHHHHHHH
T ss_pred             CE--EEEEeCCCccHHHHHHHHHhh
Confidence            66  999999999999999999876

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.023  Score=48.94  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      -+|+|+|+.++|||+|++.|++...
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcccC
Confidence            3688999999999999999987654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.15  Score=39.17  Aligned_cols=21  Identities=24%  Similarity=0.083  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|..++|||.|++++...
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            578999999999999999754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.41  E-value=0.027  Score=43.02  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.3

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ||.+.|+.+||||++++.|.+.+
T Consensus         6 iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999997654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.40  E-value=0.042  Score=43.55  Aligned_cols=27  Identities=30%  Similarity=0.231  Sum_probs=23.2

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .+| -||.|+||.+||||++..+|..++
T Consensus         4 ~kp-~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKP-NVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCC-EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCC-cEEEEECCCCCCHHHHHHHHHHHH
Confidence            345 588999999999999999998874

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.36  E-value=0.044  Score=43.60  Aligned_cols=27  Identities=26%  Similarity=0.269  Sum_probs=23.9

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -++.||.|+||.+||||+++..|..++
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            357789999999999999999999875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.028  Score=43.78  Aligned_cols=25  Identities=24%  Similarity=0.220  Sum_probs=22.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ||-++|+.+||||+|++.|.+++..
T Consensus        21 vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5679999999999999999998754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.032  Score=47.79  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=21.6

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +++|+||.++|||+||+.+.+-+..
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~~p   52 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLETI   52 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCCC
Confidence            7899999999999999999876543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=92.27  E-value=0.016  Score=44.62  Aligned_cols=22  Identities=36%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             EEEEEecccccChhHHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      --|+++|...+|||+|+|+|.+
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3478899999999999999954

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.18  E-value=0.026  Score=48.63  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|+|+|+.++|||+|++.|++...
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCChHHHHHHHHhcccC
Confidence            578889999999999999987654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.16  E-value=0.038  Score=42.72  Aligned_cols=21  Identities=24%  Similarity=0.202  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|+.++|||.|+|+|...
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999999753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.14  E-value=0.021  Score=47.39  Aligned_cols=25  Identities=32%  Similarity=0.417  Sum_probs=21.7

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +++|+||.++|||+|++.+.+.+..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhccccc
Confidence            6889999999999999999876543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.06  E-value=0.029  Score=47.90  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++|+||.++|||+||+.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            7899999999999999988654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.03  E-value=0.033  Score=48.68  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=22.3

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      -+|+|+|+.++|||+||+.|++.+..
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~~p   88 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGELEA   88 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCcC
Confidence            46899999999999999999886543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.99  E-value=0.044  Score=44.95  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.7

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -+|+|.|..+||||+++|+|...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            37999999999999999999764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=91.98  E-value=0.03  Score=47.82  Aligned_cols=25  Identities=16%  Similarity=0.262  Sum_probs=22.1

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +++++||.++|||+|+|.|++.+..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            7899999999999999999876543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=91.74  E-value=0.051  Score=43.11  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=22.0

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ||+|.||.+||||++...|...+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            899999999999999999998753

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=91.72  E-value=0.052  Score=41.41  Aligned_cols=24  Identities=13%  Similarity=0.317  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .|.|.|+.++|||++++.|...+.
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhC
Confidence            466789999999999999988753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.70  E-value=0.045  Score=42.40  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||+|+|+|...
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            679999999999999999754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=91.64  E-value=0.035  Score=46.99  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=20.1

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +++|+|+.++|||+|++.|.+.
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7899999999999999999863

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.61  E-value=0.042  Score=47.22  Aligned_cols=25  Identities=16%  Similarity=0.143  Sum_probs=21.9

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +++|+||.++|||+|++.+++.+..
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~~p   58 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLEEP   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            6899999999999999999876543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=91.56  E-value=0.043  Score=47.15  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=20.7

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+||.++|||+||+.+++-+
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            78999999999999999997654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.047  Score=42.15  Aligned_cols=22  Identities=23%  Similarity=0.144  Sum_probs=18.6

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      =|.|+|+.++|||.|+|+|...
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3667899999999999999753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=0.051  Score=41.96  Aligned_cols=21  Identities=33%  Similarity=0.175  Sum_probs=18.6

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..++|||.|+|+++..
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            677899999999999999754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.38  E-value=0.099  Score=42.41  Aligned_cols=28  Identities=18%  Similarity=0.244  Sum_probs=23.8

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +..++-++||.+||||++++.+++.+..
T Consensus        45 ~~~~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          45 VNMIYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             cceEEEeECCCCCCHHHHHHHHHHHHHh
Confidence            4456778899999999999999998754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.36  E-value=0.068  Score=41.62  Aligned_cols=25  Identities=24%  Similarity=0.088  Sum_probs=21.7

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+--|.|+|...+|||.|+|++...
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhC
Confidence            6667889999999999999999743

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.072  Score=41.43  Aligned_cols=26  Identities=23%  Similarity=0.206  Sum_probs=22.8

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .|+.=|.|+|+..+|||.|+|++...
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            46777899999999999999999764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=0.063  Score=40.89  Aligned_cols=26  Identities=15%  Similarity=0.146  Sum_probs=21.4

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .|+-++|+.+||||+++..|...+..
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~l~~   32 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQLHA   32 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34446899999999999999988644

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=91.31  E-value=0.048  Score=41.92  Aligned_cols=25  Identities=20%  Similarity=0.115  Sum_probs=20.1

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +..-|.|+|..++|||+|+|+|...
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcC
Confidence            3344668899999999999999754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.05  Score=42.06  Aligned_cols=21  Identities=38%  Similarity=0.292  Sum_probs=18.4

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|+..+|||.|+|+|...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            677899999999999999754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=91.24  E-value=0.055  Score=41.76  Aligned_cols=20  Identities=15%  Similarity=0.383  Sum_probs=17.6

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.++|+.++|||.|+|+|..
T Consensus         5 i~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            55789999999999999964

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=91.17  E-value=0.049  Score=41.76  Aligned_cols=20  Identities=20%  Similarity=0.202  Sum_probs=17.4

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.|+|+..+|||+|+|+|..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            55899999999999999843

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=91.15  E-value=0.036  Score=47.41  Aligned_cols=25  Identities=16%  Similarity=0.343  Sum_probs=21.9

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +++|+||.++|||+|++.|.+-+..
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~p   52 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHVP   52 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcCC
Confidence            7899999999999999999876543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.09  E-value=0.063  Score=41.09  Aligned_cols=25  Identities=24%  Similarity=0.197  Sum_probs=21.9

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ||-|.|+.++|||++++.|...+..
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6778999999999999999988643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.051  Score=42.04  Aligned_cols=20  Identities=40%  Similarity=0.351  Sum_probs=17.9

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      |.|+|..++|||.|+|+++.
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            56889999999999999975

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.07  E-value=0.037  Score=43.78  Aligned_cols=29  Identities=24%  Similarity=0.393  Sum_probs=23.9

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+|+ +|+|.|.-++|||+|++.|.+.+..
T Consensus         7 ~kp~-~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           7 TQPF-TVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             CCCE-EEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             CCce-EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3554 7889999999999999999877643

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=90.95  E-value=0.05  Score=42.11  Aligned_cols=24  Identities=33%  Similarity=0.393  Sum_probs=19.8

Q ss_pred             CceEEEEEEecccccChhHHHHHHH
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll   77 (281)
                      ++.+- |.++|+..+|||+|+|+|.
T Consensus        14 ~~~~k-I~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          14 DQEVR-ILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SSCEE-EEEEESTTSSHHHHHHHHC
T ss_pred             CCEEE-EEEECCCCCCHHHHHHHHh
Confidence            44554 6699999999999999994

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=90.87  E-value=0.046  Score=46.62  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +++++||.++|||+|+|.+...+..
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~~p   58 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Confidence            7899999999999999999876543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.80  E-value=0.047  Score=47.18  Aligned_cols=23  Identities=30%  Similarity=0.353  Sum_probs=20.5

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+|++.+++..
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            78999999999999999997653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=90.71  E-value=0.06  Score=43.67  Aligned_cols=22  Identities=18%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             EEEEEecccccChhHHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      -||+|.|..+||||++++.|-.
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.68  E-value=0.066  Score=41.39  Aligned_cols=21  Identities=24%  Similarity=0.213  Sum_probs=18.0

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|...+|||+|+|+|...
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            457799999999999999754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.047  Score=46.91  Aligned_cols=23  Identities=30%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +++|+|+.++|||+||+.+.+-+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            78999999999999999997643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=90.63  E-value=0.27  Score=41.00  Aligned_cols=29  Identities=24%  Similarity=0.263  Sum_probs=19.7

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ++.=.||..+||.++||++.+=.|..++.
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34447788999999999999999987654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=90.59  E-value=0.12  Score=45.83  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=24.1

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +.=-||+|+|+.++|||++.+.|...+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            3447899999999999999999987764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.58  E-value=0.068  Score=41.73  Aligned_cols=21  Identities=38%  Similarity=0.357  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+..+|||+|+|+++..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999999753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.53  E-value=0.051  Score=46.60  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      |++++||.++|||+|++.+...+..
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~~p   56 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFLKA   56 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHHCCCcC
Confidence            7899999999999999999876543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.075  Score=41.78  Aligned_cols=21  Identities=29%  Similarity=0.165  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|..++|||.|+|+|+..
T Consensus         8 ivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999999754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.21  E-value=0.086  Score=41.54  Aligned_cols=22  Identities=32%  Similarity=0.353  Sum_probs=19.7

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +|.|+||.++|||+|++.|...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5669999999999999999876

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.072  Score=41.36  Aligned_cols=21  Identities=33%  Similarity=0.379  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..++|||.|+|++...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            778999999999999999754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.17  E-value=0.089  Score=41.42  Aligned_cols=23  Identities=26%  Similarity=0.179  Sum_probs=21.0

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      ||.|.||.+||||+++.+|...+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.16  E-value=0.082  Score=42.60  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=29.3

Q ss_pred             eEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031          34 KFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        34 ~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .|.=-++.++.|...    ..+  +|.|.|+.|+|||.|+.++++.+
T Consensus        13 ~f~GR~~el~~l~~~----~~~--~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          13 DFFDREKEIEKLKGL----RAP--ITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             GSCCCHHHHHHHHHT----CSS--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hCCChHHHHHHHHhc----cCC--EEEEEcCCCCcHHHHHHHHHHHC
Confidence            344445677776542    222  46688999999999999998765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.14  E-value=0.07  Score=45.88  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=21.6

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +++++||.++|||+||+.|.+-+..
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~p   50 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            6678999999999999999886544

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.079  Score=40.86  Aligned_cols=22  Identities=27%  Similarity=0.288  Sum_probs=19.3

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      =|.|+|...+|||.|+|+++..
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4778899999999999999754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.07  E-value=0.034  Score=48.02  Aligned_cols=24  Identities=29%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|+|+|+.++|||+|++.|++...
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHhcCC
Confidence            678899999999999999987543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=90.05  E-value=0.077  Score=39.14  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=20.1

Q ss_pred             EEEecccccChhHHHHHHHHhhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      |-++|+.++|||++...|...|..
T Consensus         5 I~l~G~~GsGKSTvak~La~~L~~   28 (169)
T d1kaga_           5 IFLVGPMGAGKSTIGRQLAQQLNM   28 (169)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            556699999999999999988644

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.02  E-value=0.12  Score=41.54  Aligned_cols=29  Identities=21%  Similarity=0.180  Sum_probs=24.1

Q ss_pred             ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+...+-|.||.+||||++++.+++.+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            34556779999999999999999988753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=0.12  Score=40.95  Aligned_cols=27  Identities=30%  Similarity=0.290  Sum_probs=23.1

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +-|..=|.|+|..++|||.|+|+++..
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHS
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhC
Confidence            346777899999999999999999764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.94  E-value=0.084  Score=40.39  Aligned_cols=21  Identities=24%  Similarity=0.146  Sum_probs=18.9

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..++|||.|+|++...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999999754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.91  E-value=0.069  Score=44.20  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=20.6

Q ss_pred             EEEecccccChhHHHHHHHHhhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +=|.|+.++|||+||+.+...+..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~   62 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKK   62 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcc
Confidence            569999999999999999887543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.87  E-value=0.048  Score=46.96  Aligned_cols=24  Identities=13%  Similarity=0.188  Sum_probs=21.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      -+++|+||.++|||+|++.+.+-.
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            378999999999999999998753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.82  E-value=0.085  Score=41.39  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=18.6

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|...+|||+|+|++...
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            669999999999999999753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.81  E-value=0.08  Score=41.20  Aligned_cols=22  Identities=27%  Similarity=0.154  Sum_probs=19.0

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|.|+|+..+|||.|+|+++..
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3668899999999999999754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=0.081  Score=41.00  Aligned_cols=21  Identities=29%  Similarity=0.222  Sum_probs=18.4

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..++|||.|+|++...
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            677899999999999999753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.088  Score=40.85  Aligned_cols=21  Identities=29%  Similarity=0.284  Sum_probs=18.2

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|+.++|||.|+|++...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            567899999999999999754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.59  E-value=0.11  Score=41.62  Aligned_cols=24  Identities=17%  Similarity=0.354  Sum_probs=21.5

Q ss_pred             EEEEecccccChhHHHHHHHHhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +|+|.||.++|||+++-.|...+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999998753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=89.41  E-value=0.098  Score=42.50  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=19.7

Q ss_pred             EEEEEecccccChhHHHHHHHH
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .||+|+|..+||||+.++.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            3799999999999999998864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.31  E-value=0.099  Score=40.31  Aligned_cols=21  Identities=29%  Similarity=0.177  Sum_probs=18.4

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..++|||.|++++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            567899999999999999754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.31  E-value=0.092  Score=41.14  Aligned_cols=21  Identities=19%  Similarity=0.089  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|+.++|||.|+|+|...
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            668999999999999999743

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.24  E-value=0.095  Score=40.30  Aligned_cols=21  Identities=29%  Similarity=0.276  Sum_probs=18.6

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|...+|||.|+|+++..
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999999754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.16  E-value=0.1  Score=40.71  Aligned_cols=21  Identities=29%  Similarity=0.192  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|...+|||.|+|+|...
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999999754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.08  E-value=0.11  Score=40.17  Aligned_cols=21  Identities=19%  Similarity=0.195  Sum_probs=18.1

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..++|||.|+++++..
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            457899999999999999754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.06  E-value=0.12  Score=40.80  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=22.6

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +|+|.|.-++|||+++..|..++..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~   26 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5889999999999999999998765

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.94  E-value=0.43  Score=41.31  Aligned_cols=48  Identities=13%  Similarity=0.235  Sum_probs=33.4

Q ss_pred             CceEEEEEecCCCCCCCcCcccchhhHHHHHhhhhhhhhccCCCCChhhhhHh
Q psy5031         204 EKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHL  256 (281)
Q Consensus       204 ~~v~VlLlDTEG~~d~~~s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~~L  256 (281)
                      +...+-|+||+|..+--     ...+.+|...=+..+|.+...-+..+....+
T Consensus        69 ~~~~~n~iDtPG~~dF~-----~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w  116 (276)
T d2bv3a2          69 KDHRINIIDAPGHVDFT-----IEVERSMRVLDGAIVVFDSSQGVEPQSETVW  116 (276)
T ss_dssp             TTEEEEEECCCSSSSCS-----TTHHHHHHHCCEEEEEEETTTSSCHHHHHHH
T ss_pred             CCeEEEEecCCchhhhH-----HHHHHHHHhhhheEEeccccCCcchhHHHHH
Confidence            34669999999987553     3356677777777888888777766554443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.79  E-value=0.12  Score=42.86  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=22.8

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ||-|.-|.|.-++|||+|||+++++
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            6778888999999999999999986

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.78  E-value=0.12  Score=41.68  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             CCceEEEEEEecccccChhHHHHHHHH
Q psy5031          52 KDKHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      +.+|-.-|+|+|---+|||+|+|+|+.
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHh
Confidence            467866899999888899999999974

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=88.66  E-value=0.12  Score=40.83  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=21.0

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |.- |.|.||.+||||+++..|..++
T Consensus         3 Pm~-I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLK-VMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCC-EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeE-EEEECCCCCCHHHHHHHHHHHH
Confidence            443 5599999999999999998875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.53  E-value=0.12  Score=39.91  Aligned_cols=21  Identities=24%  Similarity=0.211  Sum_probs=18.8

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|..++|||.|+++|...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999999754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.42  E-value=0.13  Score=41.11  Aligned_cols=21  Identities=19%  Similarity=0.347  Sum_probs=18.5

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+||.++||++|+++|++.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            556899999999999999865

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.26  E-value=0.23  Score=43.53  Aligned_cols=31  Identities=16%  Similarity=0.055  Sum_probs=28.3

Q ss_pred             CCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .++|.+++..+||.++||++|+..|.+.+.+
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~   79 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAATLFD   79 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHHhcC
Confidence            3789999999999999999999999998854

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.24  E-value=0.14  Score=39.52  Aligned_cols=22  Identities=14%  Similarity=0.128  Sum_probs=19.9

Q ss_pred             EEEecccccChhHHHHHHHHhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |.|.|+.+||||++...|...+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6699999999999999998875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=0.12  Score=40.11  Aligned_cols=21  Identities=24%  Similarity=0.181  Sum_probs=17.4

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.|+|..++|||.|++++...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            346699999999999999754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.08  E-value=0.11  Score=45.82  Aligned_cols=25  Identities=20%  Similarity=0.242  Sum_probs=19.3

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ||+|+|+.++|||++.+.|...+..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~   30 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRR   30 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhh
Confidence            7999999999999999999877643

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.77  E-value=0.081  Score=41.18  Aligned_cols=23  Identities=17%  Similarity=0.089  Sum_probs=8.9

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -=|.++|..++|||.|+++|+..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            34778899999999999999753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.65  E-value=0.14  Score=39.66  Aligned_cols=21  Identities=33%  Similarity=0.200  Sum_probs=18.2

Q ss_pred             EEEEecccccChhHHHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      -|.++|..++|||.|+|++..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            367889999999999999864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.46  E-value=0.22  Score=38.57  Aligned_cols=25  Identities=24%  Similarity=0.112  Sum_probs=20.4

Q ss_pred             eEEEEEEecccccChhHHHHHHHHh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |--=|.++|...+|||.|+|+++..
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhC
Confidence            3445678899999999999999754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.35  E-value=0.16  Score=40.34  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.2

Q ss_pred             EEEecccccChhHHHHHHHHhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |.|+||.++||++|+++|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            4588999999999999998764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=87.33  E-value=0.17  Score=39.66  Aligned_cols=24  Identities=25%  Similarity=0.198  Sum_probs=20.2

Q ss_pred             EEEEEEecccccChhHHHHHHHHhh
Q psy5031          56 VVVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        56 VaVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      +-|| ++||.+||||++..+|...+
T Consensus         4 ~rii-l~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           4 VRAV-LLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CEEE-EECCTTSSHHHHHHHHHHHH
T ss_pred             cEEE-EECCCCCCHHHHHHHHHHHh
Confidence            4455 68999999999999998775

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=87.27  E-value=0.22  Score=39.62  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=22.0

Q ss_pred             CceEEEEEEecccccChhHHHHHHHH
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .||..=|+|+|--..|||+|+|+|+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHh
Confidence            35667799999888899999999974

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.24  E-value=0.18  Score=39.70  Aligned_cols=27  Identities=22%  Similarity=0.123  Sum_probs=22.8

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ++++-=|.|+|..++|||.|+|++...
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhC
Confidence            456667899999999999999999754

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.23  E-value=1.4  Score=38.96  Aligned_cols=53  Identities=15%  Similarity=0.177  Sum_probs=34.0

Q ss_pred             CCCceEEEEEecCCCCCCCcCcccchhhHHHHHhhhhhhhhccCCCCChhhhhHhHHH
Q psy5031         202 TGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLF  259 (281)
Q Consensus       202 ~g~~v~VlLlDTEG~~d~~~s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~~L~l~  259 (281)
                      +++...+=|+||+|-.+-     .+..+.+|...=...+|.+...-+..+....+...
T Consensus        92 ~~~~~~inliDtPGh~dF-----~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a  144 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDF-----SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA  144 (341)
T ss_dssp             CSSEEEEEEECCCCCCSS-----CHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH
T ss_pred             cccceEEEEEcCCCcHHH-----HHHHHHHHhhcCceEEEEecccCcchhHHHHHHHH
Confidence            566778899999997544     24455556555556667777666666655555443

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.19  E-value=0.15  Score=40.29  Aligned_cols=21  Identities=29%  Similarity=0.165  Sum_probs=18.2

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..++|||.|++++...
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            557899999999999999754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=87.14  E-value=0.91  Score=38.83  Aligned_cols=51  Identities=18%  Similarity=0.068  Sum_probs=33.3

Q ss_pred             eEEEEEecCCCCCCCcCcccchhhHHHHHhhhhhhhhccCCCCChhhhhHhHHHHH
Q psy5031         206 AAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTE  261 (281)
Q Consensus       206 v~VlLlDTEG~~d~~~s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~~L~l~t~  261 (281)
                      ..+-|+||+|..+-     ....+-+|...=+..++.....-+..+....+++..+
T Consensus        67 ~~~n~iDtPGh~dF-----~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~  117 (267)
T d2dy1a2          67 HRVFLLDAPGYGDF-----VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER  117 (267)
T ss_dssp             EEEEEEECCCSGGG-----HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH
T ss_pred             cceeEEccCchhhh-----hhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhh
Confidence            45889999997643     2345556666666667777776677666666554444

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=87.06  E-value=0.18  Score=39.42  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=19.9

Q ss_pred             EEEecccccChhHHHHHHHHhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |.|+|+.+||||++...|...+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6689999999999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=86.99  E-value=0.1  Score=40.65  Aligned_cols=25  Identities=20%  Similarity=0.195  Sum_probs=19.7

Q ss_pred             CceEEEEEEecccccChhHHHHHHH
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLL   77 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll   77 (281)
                      .++-.=|.++|+..+|||+|+|+|.
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHh
Confidence            3344455699999999999999984

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.83  E-value=0.13  Score=44.11  Aligned_cols=20  Identities=25%  Similarity=0.257  Sum_probs=18.7

Q ss_pred             EEEecccccChhHHHHHHHH
Q psy5031          59 VSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~   78 (281)
                      ||++|...+|||+|.|.|-+
T Consensus         3 v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EeEECCCCCCHHHHHHHHHC
Confidence            79999999999999999964

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=86.70  E-value=1  Score=37.01  Aligned_cols=25  Identities=20%  Similarity=0.135  Sum_probs=22.1

Q ss_pred             EEEEEecccccChhHHHHHHHHhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .||.++||.++|||+.+=.|..++.
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999987754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=86.70  E-value=0.18  Score=41.29  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      +|-|+||.++||++|+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4669999999999999999876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.64  E-value=0.092  Score=42.29  Aligned_cols=26  Identities=23%  Similarity=0.347  Sum_probs=22.7

Q ss_pred             EEEEEecccccChhHHHHHHHHhhhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      -.|+|-|+-++|||++++.|.+++..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            47899999999999999999887654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.56  E-value=0.12  Score=41.95  Aligned_cols=47  Identities=19%  Similarity=0.060  Sum_probs=32.3

Q ss_pred             eEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          34 KFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        34 ~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+..++++.+.+..-  +.+.++.-+=+.||.++|||+|+..+++.+.+
T Consensus        25 diig~~~~~~~l~~~--i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          25 DIVGQEHIVKRLKHY--VKTGSMPHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             TCCSCHHHHHHHHHH--HHHTCCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             HccCcHHHHHHHHHH--HHcCCCCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            455667777655431  22233334568999999999999999987655

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.55  E-value=0.19  Score=40.70  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .|+|-|.-++|||++++.|.+++..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhh
Confidence            6778899999999999999998754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=86.47  E-value=0.27  Score=41.33  Aligned_cols=40  Identities=20%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhc
Q psy5031          40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFT   83 (281)
Q Consensus        40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~   83 (281)
                      ++|..++..   ..|+ ..+.++||..||||++++.|+..+.+.
T Consensus        41 ~~l~~~l~~---~PKk-n~i~~~GP~~TGKS~f~~sl~~~l~G~   80 (205)
T d1tuea_          41 GALKSFLKG---TPKK-NCLVFCGPANTGKSYFGMSFIHFIQGA   80 (205)
T ss_dssp             HHHHHHHHT---CTTC-SEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHcC---CCCc-eEEEEECCCCccHHHHHHHHHHHhCCE
Confidence            577777753   2334 566789999999999999999988654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.26  E-value=0.21  Score=39.51  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             EEEEEecccccChhHHHHHHHHhh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      .||-|.||.+||||++..+|...+
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            457888999999999999998763

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.95  E-value=0.24  Score=37.48  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             EEEEEecccccChhHHHHHHHHh
Q psy5031          57 VVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        57 aVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .|+-|+|+.++|||.|+.+|+.+
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHH
Confidence            37889999999999999999865

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=85.69  E-value=0.69  Score=37.48  Aligned_cols=23  Identities=22%  Similarity=0.327  Sum_probs=19.5

Q ss_pred             EEEEecccccChhHHHHHHHHhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      =|+|+|---.|||+|+|+|+.-+
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHH
Confidence            46789999999999999998643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=85.69  E-value=0.1  Score=40.75  Aligned_cols=19  Identities=32%  Similarity=0.167  Sum_probs=16.0

Q ss_pred             cchhhccCchhHHHHHHhh
Q psy5031         133 KVSAFRKGKSFLLDFLLRY  151 (281)
Q Consensus       133 ~~~~~r~gkS~Lln~l~~~  151 (281)
                      .+|.-+.|||.|+|.|.+.
T Consensus         6 iiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           6 LVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EESSTTSSHHHHHHHSEEE
T ss_pred             EECCCCCCHHHHHHHHhCC
Confidence            3577889999999999774

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.65  E-value=0.19  Score=43.15  Aligned_cols=21  Identities=19%  Similarity=0.284  Sum_probs=19.3

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |+|+|...+|||+|.|.|.+.
T Consensus        13 iGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          13 TGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            899999999999999999753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.16  E-value=0.25  Score=39.45  Aligned_cols=22  Identities=36%  Similarity=0.403  Sum_probs=19.2

Q ss_pred             EEEecccccChhHHHHHHHHhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |.|+||.++||++|++.|+...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            4589999999999999998764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=85.12  E-value=0.26  Score=38.17  Aligned_cols=22  Identities=23%  Similarity=0.229  Sum_probs=18.8

Q ss_pred             EecccccChhHHHHHHHHhhhh
Q psy5031          61 VAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        61 I~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      ++|+.++|||++...|...+..
T Consensus         7 l~G~~GsGKSTia~~LA~~Lg~   28 (170)
T d1e6ca_           7 MVGARGCGMTTVGRELARALGY   28 (170)
T ss_dssp             EESCTTSSHHHHHHHHHHHHTC
T ss_pred             EECCCCCCHHHHHHHHHHHhCC
Confidence            5699999999999999887644

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=84.86  E-value=0.45  Score=41.33  Aligned_cols=31  Identities=23%  Similarity=0.156  Sum_probs=28.0

Q ss_pred             CCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .++|.+++..+||.++||++|+..|.+.+..
T Consensus        48 ~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~   78 (315)
T d1r6bx3          48 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGI   78 (315)
T ss_dssp             TTSCSEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CCCCceEEEEECCCcchhHHHHHHHHhhccC
Confidence            3789999999999999999999999998753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.85  E-value=0.27  Score=38.21  Aligned_cols=23  Identities=22%  Similarity=0.102  Sum_probs=20.2

Q ss_pred             EEEecccccChhHHHHHHHHhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      |.|.|+.+||||++...|...+.
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            66889999999999999988753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=84.43  E-value=0.17  Score=39.16  Aligned_cols=25  Identities=24%  Similarity=0.218  Sum_probs=19.3

Q ss_pred             CceEEEEEEecccccChhHHHHHHHH
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLR   78 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~   78 (281)
                      .+.+-| .++|+..+|||+|+|+|..
T Consensus        10 ~k~~kI-vlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          10 NKEMRI-LMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TCCEEE-EEEEETTSSHHHHHHHTTC
T ss_pred             CCeEEE-EEECCCCCCHHHHHHHHhc
Confidence            344554 4889999999999999853

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=84.41  E-value=0.19  Score=44.27  Aligned_cols=23  Identities=22%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             EEEecccccChhHHHHHHHHhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      |-|+|+.+||||+|||.|+++..
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSC
T ss_pred             EEEEeeccccchHHHHHHhhhcc
Confidence            46799999999999999998753

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=84.40  E-value=0.25  Score=41.91  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=19.5

Q ss_pred             EEEEecccccChhHHHHHHHHh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      -|+|+|...+|||+|.|.|-+.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            3799999999999999999753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.05  E-value=0.25  Score=38.37  Aligned_cols=19  Identities=32%  Similarity=0.364  Sum_probs=17.1

Q ss_pred             EEEEecccccChhHHHHHH
Q psy5031          58 VVSVAGAFRKGKSFLLDFL   76 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~L   76 (281)
                      -|-++|..++|||.|++++
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3568999999999999999

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=83.38  E-value=0.32  Score=37.69  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.3

Q ss_pred             EEEecccccChhHHHHHHHHhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |.|+|+.+||||++..+|...+
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5578999999999999998765

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=83.27  E-value=0.35  Score=38.62  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=21.5

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .|+|-|+-+||||++++.|..++..
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~   28 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQ   28 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4677888889999999999998765

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.24  E-value=0.16  Score=40.85  Aligned_cols=24  Identities=17%  Similarity=0.033  Sum_probs=21.1

Q ss_pred             EEEecccccChhHHHHHHHHhhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +-+.||.++|||+|+..+++.+.+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l~~   59 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKELYG   59 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHHcC
Confidence            558899999999999999988654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.60  E-value=0.39  Score=37.54  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.3

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..++|||.|+++++..
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568899999999999999764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.53  E-value=0.55  Score=39.69  Aligned_cols=28  Identities=21%  Similarity=0.172  Sum_probs=24.8

Q ss_pred             CCceEEEEEEecccccChhHHHHHHHHh
Q psy5031          52 KDKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      .+....||+|+|.-+.|||+|+..+++.
T Consensus        40 ~~~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          40 CDLDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             TTSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHHh
Confidence            3567889999999999999999999765

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=82.36  E-value=0.39  Score=37.04  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=19.6

Q ss_pred             EEEecccccChhHHHHHHHHhhhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      |.++|+.++|||++...|...+..
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            445699999999999999888643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=82.09  E-value=0.96  Score=33.69  Aligned_cols=19  Identities=32%  Similarity=0.195  Sum_probs=16.6

Q ss_pred             cchhhccCchhHHHHHHhh
Q psy5031         133 KVSAFRKGKSFLLDFLLRY  151 (281)
Q Consensus       133 ~~~~~r~gkS~Lln~l~~~  151 (281)
                      .+|+-..|||.|+|.|.+.
T Consensus         6 lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           6 IAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEESTTSSHHHHHHHHHTS
T ss_pred             EECCCCCCHHHHHHHHhCC
Confidence            4688899999999999874

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.72  E-value=0.4  Score=36.67  Aligned_cols=21  Identities=24%  Similarity=0.232  Sum_probs=18.3

Q ss_pred             EEEecccccChhHHHHHHHHh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      |.++|..++|||.|+++|...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            568899999999999998754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=81.57  E-value=0.49  Score=38.59  Aligned_cols=29  Identities=21%  Similarity=0.158  Sum_probs=24.5

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      +++=.||=+.|..++|||+|.+.|...+.
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34456899999999999999999988764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.22  E-value=0.46  Score=38.64  Aligned_cols=25  Identities=24%  Similarity=0.234  Sum_probs=22.2

Q ss_pred             EEEEecccccChhHHHHHHHHhhhh
Q psy5031          58 VVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        58 VVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      +|+|.|+-++|||+++..|.+.|.+
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~~L~~   29 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVEALCA   29 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6888899999999999999988765

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.17  E-value=0.39  Score=37.86  Aligned_cols=26  Identities=27%  Similarity=0.156  Sum_probs=20.6

Q ss_pred             CceEEEEEEecccccChhHHHHHHHHh
Q psy5031          53 DKHVVVVSVAGAFRKGKSFLLDFLLRY   79 (281)
Q Consensus        53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~   79 (281)
                      ..|. +|=++|+.+||||+++..++..
T Consensus        12 ~~p~-liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPE-VVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCC-EEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCE-EEEEECCCCCCHHHHHHHHHHh
Confidence            3454 6667999999999999988654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.99  E-value=0.47  Score=36.36  Aligned_cols=21  Identities=24%  Similarity=0.221  Sum_probs=18.3

Q ss_pred             EecccccChhHHHHHHHHhhh
Q psy5031          61 VAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        61 I~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ++|+.++|||++...|...+.
T Consensus         6 liG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           6 LVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EECSTTSSHHHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHHhC
Confidence            559999999999999988764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=80.92  E-value=0.38  Score=43.28  Aligned_cols=45  Identities=18%  Similarity=0.127  Sum_probs=35.3

Q ss_pred             eEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          34 KFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        34 ~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .+-+.++.++.+..   +...|=.+|=|+||.+||||++|..+++++.
T Consensus       139 ~LG~~~~~~~~l~~---l~~~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         139 SLGMTAHNHDNFRR---LIKRPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             GSCCCHHHHHHHHH---HHTSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhcccHHHHHHHHH---HHhhhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            55677776665532   2356778999999999999999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.57  E-value=0.42  Score=40.16  Aligned_cols=19  Identities=26%  Similarity=0.265  Sum_probs=17.6

Q ss_pred             cchhhccCchhHHHHHHhh
Q psy5031         133 KVSAFRKGKSFLLDFLLRY  151 (281)
Q Consensus       133 ~~~~~r~gkS~Lln~l~~~  151 (281)
                      ++|.|.+|||.|+|.|++.
T Consensus        31 vvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          31 VVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEBTTSCHHHHHHHHHTS
T ss_pred             EEcCCCCCHHHHHHHHhCC
Confidence            6899999999999999984

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=80.57  E-value=0.52  Score=41.83  Aligned_cols=27  Identities=19%  Similarity=0.235  Sum_probs=24.4

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      .|..|.|-|+.++|||++++.|.+++.
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            578899999999999999999988764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.55  E-value=0.29  Score=39.24  Aligned_cols=47  Identities=15%  Similarity=0.056  Sum_probs=31.5

Q ss_pred             eEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031          34 KFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF   82 (281)
Q Consensus        34 ~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~   82 (281)
                      .+..++++++.+..-  +.+..+.-+=+.||.++|||+|+..+++.+.+
T Consensus        15 divg~~~~~~~L~~~--i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          15 EVYGQNEVITTVRKF--VDEGKLPHLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             GCCSCHHHHHHHHHH--HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             HccCcHHHHHHHHHH--HHcCCCCeEEEECCCCCChhHHHHHHHHHhhc
Confidence            455667777765431  12222322348999999999999999987654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.43  E-value=0.5  Score=36.76  Aligned_cols=22  Identities=18%  Similarity=0.113  Sum_probs=19.0

Q ss_pred             EEEecccccChhHHHHHHHHhh
Q psy5031          59 VSVAGAFRKGKSFLLDFLLRYM   80 (281)
Q Consensus        59 VsI~G~~RtGKSfLLN~Ll~~l   80 (281)
                      |.|.|+.+||||++...|...+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            3477999999999999998874

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=80.22  E-value=0.54  Score=41.64  Aligned_cols=27  Identities=22%  Similarity=0.331  Sum_probs=23.8

Q ss_pred             eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031          55 HVVVVSVAGAFRKGKSFLLDFLLRYMN   81 (281)
Q Consensus        55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~   81 (281)
                      ++-.|+|-|..++|||++++.|.+++.
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467799999999999999999988764