Psyllid ID: psy5045

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
Protein Sequence
MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSDEDEDEDDDTMWFIEQEPQHQPEENSTTYGYGFANKTKGTLTNMKVTISKSDLGFDLEELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILSQDILGYKVMKQVTISKSDLGFDLDELETAARIVEEEEVERALCNHVSTLVLCSDSEQ
Secondary Structure (PSIPRED)
ccccEEEEEEcccEEEEEEEEcccccccEEEEEEccEEEEEEcccEEEEccccccccccccEEEEEccccEEEEEEEEccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccHHccHHHHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcEEEcccccccccccHHHHHccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccEEEEEEEEcEEEcccEEEEEcccEEEEEEccEEEEEEccccEEEccccEEEEEccccEEEEEEccccccccccccHHHHHHHcccccccccccEEEEEccccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHHHcccHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHcccccccccccHHHHHHHHHcccccHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHcHHHHccccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccc
Coil and Loop (DISEMBL)
mltpmfellqseeDVTIIIkapyaniadtevyvedtdfrfssspyylrlnfpgpiketdhtsgkydsdkgqFTFTVIKvntgehfpdldliskllippvkhrvakpgievmsepnnvsdedededddtmwfieqepqhqpeensttygygfanktkgtltnmkvtisksdlgfdLEELETAARIVEEEEVERALCNHVSTLVlcsnseqseRSIIFFIGLDFWVVSRDYASDVrqaqddrtqmtpselDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDvrttmgehtvesgwTVNKLSSALCWLQSFTSLKQVLISSMRrslcyplyrewrlscaiQQDVNTILSQDILGYKVMKQVTisksdlgfdlDELETAARIVEEEEVERALCNHVSTLVLCSDSEQ
Flexible Loop (DISEMBL)
MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRvakpgievmsepnnvsdedeDEDDDTMWFIEqepqhqpeensttYGYGFANKTKGTLTNMKVTIsksdlgfdlEELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVSRDYASDVrqaqddrtqmtpseldtmKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILSQDILGYKVMKQVTIsksdlgfdlDELETAARIVEEEEVERALCNhvstlvlcsdseq
Low Complexity Region (SEG)
MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSdedededddTMWFIEQEPQHQPEENSTTYGYGFANKTKGTLTNMKVTISKSDLGFDLeeletaariveeeeveralCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILSQDILGYKVMKQVTISKSDLGFDLDeletaariveeeeveralCNHVSTLVLCSDSEQ
Disordered region (IsUnstruct)
********L*SEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIK***********DKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVA******************************************YGYGFANKTKGTLTNMKVTISKSDLGFDLEELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVSRDYA***************************EYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILSQDILGYKVMKQVTISKSDLGFDLDELETAARIVEEEEVERALCNHVSTLVLC*****
Disordered Region (DISOPRED)
MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLIS**********************************DTMWFI**************YGYGFANKTKGTLTNMKVTISKSDLGFDLEELE*******EEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVS********************************YLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILSQDILGYKVMKQVTISKSDLGFDLDELETAARIVEEEEVERALCNHVS***LC*****
Disordered Region (DISEMBL)
MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEP************DTMWFIEQEPQHQPEENSTTYGYGFANKTKGTLTNMKVTISKSDLGFDLEELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILSQDILGYKVMKQVTISKSDLGFDLDELETAARIVEEEEVERALCNHVSTLVLCSDSEQ
Disordered Region (DISPRO)
MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEP***********DDTMWFIEQEPQHQPEENSTTYGYGFANKTKGTLTNMKVTISKSDLGFDLEELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILSQDILGYKVMKQVTISKSDLGFDLDELETAARIVEEEEVERALCNHVSTLVLCSD***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSDEDEDEDDDTMWFIEQEPQHQPEENSTTYGYGFANKTKGTLTNMKVTISKSDLGFDLEELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILSQDILGYKVMKQVTISKSDLGFDLDELETAARIVEEEEVERALCNHVSTLVLCSDSEQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	407	2.2.26 [Sep-21-2011]
Q05B18	604	Protein SHQ1 homolog OS=X	yes	N/A	0.938	0.632	0.325	2e-52
Q7TMX5	569	Protein SHQ1 homolog OS=M	yes	N/A	0.911	0.652	0.312	2e-48
A1L1R0	585	Protein SHQ1 homolog OS=D	yes	N/A	0.864	0.601	0.326	2e-47
Q6PI26	577	Protein SHQ1 homolog OS=H	yes	N/A	0.800	0.564	0.323	4e-47
Q3MHH1	579	Protein SHQ1 homolog OS=B	yes	N/A	0.798	0.561	0.320	1e-43
Q9TYM6	431	Protein SHQ1 homolog OS=C	yes	N/A	0.805	0.761	0.295	5e-35
O43076	451	Protein shq1 OS=Schizosac	yes	N/A	0.872	0.787	0.299	3e-32
P40486	507	Protein SHQ1 OS=Saccharom	yes	N/A	0.800	0.642	0.251	4e-15
Q9VI74	608	Protein SHQ1 homolog OS=D	yes	N/A	0.452	0.302	0.282	1e-11

>sp|Q05B18|SHQ1_XENTR Protein SHQ1 homolog OS=Xenopus tropicalis GN=shq1 PE=2 SV=1

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 145/446 (32%), Positives = 223/446 (50%), Gaps = 64/446 (14%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           M+TP F++ Q  + +TIIIK PYA  ++ ++Y+E  DF+F + PY+LRL  PG I E   
Sbjct: 1   MITPAFDISQDSDFLTIIIKVPYARASEIDIYIEGDDFKFYAKPYFLRLALPGRIVEDGR 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSDE 120
               Y++D G  T +V K   G+HF  LDL++ LL P    + AKP +E +   +NV +E
Sbjct: 61  QKATYNADDGIITVSVPKETPGQHFEGLDLLTSLLAP-RGSKSAKPLVEEIGSSDNVVEE 119

Query: 121 DEDEDDDTMWFIEQEPQHQPEENS--TTYGYGFANKTKGTLTNMKVTISKSDLGFDLEEL 178
           +EDE D   W IEQ P  +P E +  +   YGF N   G    ++  ++      D+ +L
Sbjct: 120 EEDEFD---WQIEQTPFVEPTEEALQSQCTYGFGNLRSGVFRRLQEELN------DVIDL 170

Query: 179 ETAARIVEEEEVERALCNHVSTL----VLCSNSEQSERSIIFFIGLDFWVVSRDYA--SD 232
                    E   R L    +       L    E  E  +   +    W V+  +A  S 
Sbjct: 171 RDPDVTPASERTRRRLAAEKAKFDPDHYLADLFE--EEPVQHLLKYQPWWVAEIHAGCSL 228

Query: 233 VRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHT 292
             ++Q+ R   +  + + +++  N+ +LL  + +    L L+++L AYCY+VR T G+  
Sbjct: 229 SAESQERRVSFSDKQKEQLRKFTNKSHLLDKKTQQQAYLGLIDLLLAYCYEVRVTEGDQN 288

Query: 293 VESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWR---------------- 336
           VES W + KLSS L W ++FT +K +L+S  RR LCYPLYR ++                
Sbjct: 289 VESAWNIRKLSSTLSWFENFTCVKDILVSFGRRVLCYPLYRNFQLVEKAIADTVSLLKLG 348

Query: 337 ----LSCAI-------QQDVNTILS-----------QDILGYKV------MKQVTISKSD 368
               L C +       + D   IL+           Q +   KV      ++ ++ISKSD
Sbjct: 349 KAAVLKCLLEIHAIFQENDPAYILNDLYITDYCIWIQKVKSKKVASLSDCVQSLSISKSD 408

Query: 369 LGFDLDELETAARIVEEEEVERALCN 394
           LGF+L ELE AAR+V+EEE +  L +
Sbjct: 409 LGFELGELEEAARLVQEEETQGQLAS 434

Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs).
Xenopus tropicalis (taxid: 8364)

>sp|Q7TMX5|SHQ1_MOUSE Protein SHQ1 homolog OS=Mus musculus GN=Shq1 PE=2 SV=2

 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 146/467 (31%), Positives = 224/467 (47%), Gaps = 96/467 (20%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP FEL Q  + +T+ I+ P+A  ++ +VY E  DF+F + PY+LRL  PG I E   
Sbjct: 1   MLTPAFELTQDCDFLTVAIRVPHARASEFDVYFEGVDFKFYAKPYFLRLTLPGRIVENGS 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSDE 120
             G YD+DKG FT  + K   G+HF  L++++ LL  P K R AKP +E +       + 
Sbjct: 61  EQGTYDADKGIFTIRLPKETPGQHFEGLNMLTALLA-PRKSRSAKPLVEEIGASGVAEEG 119

Query: 121 DEDEDDDTMWFIEQEPQHQPEENS--TTYGYGFANKTKGTLTNMKVTIS----------- 167
            +DED++  W IEQ P  +  E++  +   YGF N   G +  ++  +S           
Sbjct: 120 ADDEDEEFDWEIEQTPYEEVSESTLQSQCHYGFGNLRAGVVQRLQDELSEVIDIKDPDFT 179

Query: 168 ------KSDLGFDLEELET---AARIVEEEEVERAL-----CNHVSTLVLCSNSEQSERS 213
                 +  L  +L + +     A   E+E VE+ L      N     ++ S  +  E+ 
Sbjct: 180 PVTERRQKRLAAELAKFDPDHYLADFFEDEAVEQILKYSPWWNDAHAEMVASLGKNQEQG 239

Query: 214 IIFFIGLDFWVVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSL 273
                         D A+ V  +++++ Q        +++  N+ YLL       V   L
Sbjct: 240 --------------DSAALVSFSEEEKYQ--------LRKFVNKSYLLDKTAHRQVYYGL 277

Query: 274 VNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYR 333
           V+IL AYCY+VR T GEH+VES WT+ KLS  LCW +++T + ++L+S  RR LCYPLYR
Sbjct: 278 VDILLAYCYEVRVTEGEHSVESAWTIRKLSPTLCWFETWTDVHEILVSFGRRVLCYPLYR 337

Query: 334 EWRL-------SCAIQQ-----------DVNTILSQDILGY------------------- 356
            ++L       +  I Q           DV+ +  ++   Y                   
Sbjct: 338 HFKLVLKAYRDTIKILQLGKSAVLKCLLDVHKVFQENDPAYILNDLYISDYCVWIQKAKS 397

Query: 357 -------KVMKQVTISKSDLGFDLDELETAARIVEEEE--VERALCN 394
                  + +K V++SK+ LG +L ELE AA +V+EEE     A CN
Sbjct: 398 KKLAALTEALKAVSLSKAQLGLELPELEAAALLVQEEEGAGRAAQCN 444

Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs), including telomerase, probably through the stabilization of DKC1, from the time of its synthesis until its association with NOP10, NHP2, and NAF1 at the nascent H/ACA RNA.

Mus musculus (taxid: 10090)

>sp|A1L1R0|SHQ1_DANRE Protein SHQ1 homolog OS=Danio rerio GN=shq1 PE=1 SV=1

 Score =  190 bits (483), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 189/371 (50%), Gaps = 19/371 (5%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           M+TP FEL Q  + + ++I+ PY   +D ++Y+++ +F+F + PY+LRL  PG I E   
Sbjct: 1   MITPAFELSQDADFLIVVIRVPYTRTSDFDIYIQEEEFKFYAKPYFLRLTLPGRIVEDGR 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSDE 120
               +D DKG FT  V K   G+HF  L++++ LL P    R AKP +E         +E
Sbjct: 61  EKASFDIDKGLFTLHVPKETAGQHFEGLEMLTSLLAPK-GSRSAKPLVEDSEACGEGCEE 119

Query: 121 DEDEDDDTMWFIEQEPQHQPEENSTT--YGYGFANKTKGTLTNMKVTISKSDLGFDLEEL 178
           +++E D   W IEQE   +   ++    + YGF N   G  + ++  +++     D +  
Sbjct: 120 EDEEFD---WQIEQEVYTEAPADTLKEYHKYGFGNLRSGVFSRLQEELNEVIDMKDPDNT 176

Query: 179 ETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVSRDYASDVRQAQD 238
               R     + E A+      LV     ++  R+++ F    +W   R    D     D
Sbjct: 177 NAELRRRNRLDTETAVFCADHYLVNLYEDKEEIRNLLKFK--PWW---RKLNPDPSAGYD 231

Query: 239 DRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWT 298
                T  E + M++  NR YLL  + +  V L LV+I+ AY YDVRTT GEH VES WT
Sbjct: 232 ISMTFTEEEREQMRRFTNRSYLLDKKARFHVWLGLVDIILAYVYDVRTTEGEHNVESAWT 291

Query: 299 VNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRL--------SCAIQQDVNTILS 350
           + KLS  L WL+++ S++ VL+S  RR+ CYPLYR + L        +C  Q     IL 
Sbjct: 292 IRKLSGTLSWLETYHSVQDVLVSFGRRTYCYPLYRHFSLVTLAVKDAACIFQAGKACILK 351

Query: 351 QDILGYKVMKQ 361
             +  +K+ ++
Sbjct: 352 CLLAIHKIFRE 362

Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs).

Danio rerio (taxid: 7955)

>sp|Q6PI26|SHQ1_HUMAN Protein SHQ1 homolog OS=Homo sapiens GN=SHQ1 PE=1 SV=2

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 121/374 (32%), Positives = 190/374 (50%), Gaps = 48/374 (12%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP F+L Q  + +TI I+ PYA +++ +VY E +DF+F + PY+LRL  PG I E   
Sbjct: 1   MLTPAFDLSQDPDFLTIAIRVPYARVSEFDVYFEGSDFKFYAKPYFLRLTLPGRIVENGS 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSE---PNNV 117
             G YD+DKG FT  + K   G+HF  L++++ LL  P K R AKP +E +     P  V
Sbjct: 61  EQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLA-PRKSRTAKPLVEEIGASEIPEEV 119

Query: 118 SDEDEDEDDDTMWFIEQEPQHQPEENSTT--YGYGFANKTKGTLTNMKVTIS-------- 167
            D++E +     W IEQ P  +  E++      YGF N   G L  ++  +S        
Sbjct: 120 VDDEEFD-----WEIEQTPCEEVSESALNPQCHYGFGNLRSGVLQRLQDELSDVIDIKDP 174

Query: 168 ---------KSDLGFDLEELET---AARIVEEEEVERALCNHVSTLVLCSNSEQSERSII 215
                    +  L  +L + +     A   E+E +E+         +L  N   +++   
Sbjct: 175 DFTPAAERRQKRLAAELAKFDPDHYLADFFEDEAIEQ---------ILKYNPWWTDKYSK 225

Query: 216 FFIGLDFWVVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVN 275
               L+      ++A+ V  +++++ Q        +++  N+ YLL       V  SL++
Sbjct: 226 MMAFLEKSQEQENHATLVSFSEEEKYQ--------LRKFVNKSYLLDKRACRQVCYSLID 277

Query: 276 ILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREW 335
           IL AYCY+ R T GE  VES W + KLS  LCW +++T++  +++S  RR LCYPLYR +
Sbjct: 278 ILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFETWTNVHDIMVSFGRRVLCYPLYRHF 337

Query: 336 RLSCAIQQDVNTIL 349
           +L     +D   IL
Sbjct: 338 KLVMKAYRDTIKIL 351

Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs), including telomerase, probably through the stabilization of DKC1, from the time of its synthesis until its association with NOP10, NHP2, and NAF1 at the nascent H/ACA RNA.

Homo sapiens (taxid: 9606)

>sp|Q3MHH1|SHQ1_BOVIN Protein SHQ1 homolog OS=Bos taurus GN=SHQ1 PE=2 SV=1

 Score =  177 bits (450), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 190/377 (50%), Gaps = 52/377 (13%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP F+L Q  + +T+ I+ PYA +++ +VY E  DF+F + PY+LRL  PG I E  +
Sbjct: 1   MLTPAFDLSQDPDFLTVAIRVPYARVSEFDVYFEGVDFKFYAKPYFLRLTLPGRIVENGN 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSDE 120
             G YD+DKG FT  + K   G+HF  L++++ LL  P K R AKP +E +         
Sbjct: 61  EQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLA-PRKSRTAKPLVEEIGASEVSEGG 119

Query: 121 DEDEDDDTMWFIEQEPQHQPEENSTTYG--YGFANKTKGTLTNMKVTIS----------- 167
            ED+DD+  W IEQ P  +  E++      YGF N   G    ++  +S           
Sbjct: 120 VEDDDDEFDWEIEQSPYEEVPESALNPNCRYGFGNLRSGVFQRLQDELSDVIDIKDPDFT 179

Query: 168 ------KSDLGFDLEELET---AARIVEEEEVERAL------CNHVSTLVLCSNSEQSER 212
                 +  L  +L + +     A  +E+E V++ L       +  S ++      Q E 
Sbjct: 180 SAAERRQKRLAAELAKFDPDHYLADFMEDEAVKQVLEYNPWWSDLYSEMMTSLGKSQEEE 239

Query: 213 SIIFFIGLDFWVVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLS 272
           ++               A+ V  +++++ Q        +++  N+ YLL  +    V  S
Sbjct: 240 NL---------------AALVSFSEEEKYQ--------LRKFVNKSYLLDKKAHRQVYYS 276

Query: 273 LVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLY 332
           L++IL AYCY+ R T GE  VES W + KLS  LCW +++T++ ++L+S  RR LCYPLY
Sbjct: 277 LIDILLAYCYETRVTEGERNVESAWNIRKLSPTLCWFETWTNVHEILVSFGRRVLCYPLY 336

Query: 333 REWRLSCAIQQDVNTIL 349
           R ++L     +D   IL
Sbjct: 337 RHFKLVMKTYRDTIKIL 353

Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs), including telomerase, probably through the stabilization of DKC1, from the time of its synthesis until its association with NOP10, NHP2, and NAF1 at the nascent H/ACA RNA.

Bos taurus (taxid: 9913)

>sp|Q9TYM6|SHQ1_CAEEL Protein SHQ1 homolog OS=Caenorhabditis elegans GN=Y48A5A.1 PE=3 SV=4

 Score =  149 bits (375), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 180/359 (50%), Gaps = 31/359 (8%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP+F + Q ++ + I I+AP+ NIA+ +    D  F F+  PY+LRL+F   ++E   
Sbjct: 1   MLTPVFWITQDDDALLIRIRAPHGNIAELDYDHGDYMFVFTCPPYFLRLHFKQMVEEYGS 60

Query: 61  TSG--KYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVS 118
            +G  ++ SD+G+F   V K++  EHF +LD+I++LL P   H        V    ++  
Sbjct: 61  GNGSVEWKSDEGEFHIKVPKMHKKEHFSNLDMITELLTPSTTHHQPHGNQLVEEMDDSED 120

Query: 119 DEDEDEDDDTMWFIEQEPQHQPEENST-----TYGYGFANKTKGTLTNMKVTISKSDLGF 173
           D++ D    + + +EQ+P  +PEE  +      +GYGF     G +  ++  I K     
Sbjct: 121 DDEGDG---SEFLVEQQPAAEPEEPKSDGKIEKFGYGFGWSKFGVIERLRDEIGKIVDIL 177

Query: 174 DLEELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVSRDYASDV 233
           + E +E   R   ++ +E    N      L    E  E  +         V+S  +A  +
Sbjct: 178 EPENVEIEKR--ADKLMEFDWENFDEGRYLADTLEPEEELLA--------VISSKFAQKL 227

Query: 234 RQAQDDRTQMT--PSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEH 291
             + +DRT++        + K  GN            ++ SL++I++ YCYD R    E 
Sbjct: 228 EISDEDRTKLKDLKKSKTSAKINGN---------DVEIMTSLIDIVFGYCYDQRVNDWES 278

Query: 292 TVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILS 350
             ESGW   KLS +L +   F+S+K+ L++  RR+L YPLYR ++L+  + QDV  +++
Sbjct: 279 ACESGWNCAKLSPSLSFFAKFSSVKECLLACTRRALTYPLYRSFQLTQRVIQDVCHVIT 337

Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs).

Caenorhabditis elegans (taxid: 6239)

>sp|O43076|SHQ1_SCHPO Protein shq1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=shq1 PE=3 SV=1

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 188/391 (48%), Gaps = 36/391 (9%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           M+TP FEL Q EE V + +  PY    + E+   + +  F  +PY+L+L  PG + + D 
Sbjct: 1   MITPKFELRQDEEFVYLDVHTPYIKAKNVEIDAFNNEVNFCIAPYFLKLELPGNVLDDDR 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVM------SEP 114
            +  YD   G       K   GE FPDLDL++ LL+   K  V KP IE +      S  
Sbjct: 61  ANASYDISSGFVHIKFPKETPGEVFPDLDLLTTLLVNQNKEPVKKPLIEEVEDTPSPSTS 120

Query: 115 NNVSDEDEDE-----------DDDTMWFIEQEPQHQPEENSTTYGYGFANKTKGTLTNMK 163
            N S ++E E           D D  W + Q    +  + ++T  YGF N+  G L    
Sbjct: 121 QNASKDEEKEVKIDWQNIHFDDPDFDWGLLQRLDDEKMQYTSTSQYGFNNQYSGLLKYNA 180

Query: 164 VTISKSDLGFDLEELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFW 223
           +  ++ +   + E    + R     ++E    +    +    + E  +  I+ +I     
Sbjct: 181 LVGNEINQIPEPERTPPSTRSEIRVQLEDEKFDAEHYMADFYDREMIDE-ILHYIP---- 235

Query: 224 VVSRDYASD---VRQAQDDRT-QMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYA 279
               DY  +   V+Q + DR  + T  E + + +L  R YL+ + +   V L LV +++A
Sbjct: 236 ----DYIGEFLLVQQGKSDRLLEFTSEEKEALAKLPKRSYLIDNPKN--VYLCLVPLIFA 289

Query: 280 YCYDVRTTMGEHTVESGWTVNKLSSAL-CWLQSFTSLKQVLISSMRRSLCYPLYREWRLS 338
           Y YD RTT+G+ T+ES W +  LSS + C   +F ++K + I+ +RRSL YPLYR W L+
Sbjct: 290 YAYDNRTTLGDPTIESCWNIGTLSSTISCLDTNFLAIKDIFIACIRRSLAYPLYRNWDLA 349

Query: 339 CAIQQDVNTILSQDILGYKVMKQVTISKSDL 369
               +D + ILS   LG + + +V +   +L
Sbjct: 350 LTCWKDTHAILS---LGKRWILRVLLRIRNL 377

Involved in the early biogenesis steps of box H/ACA snoRNP assembly.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40486|SHQ1_YEAST Protein SHQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHQ1 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 171/402 (42%), Gaps = 76/402 (18%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANI----ADTEVYVEDTDFRFSSSPYYLRLNFPGPIK 56
           M+TP F + Q EE   I +K   +NI       E+ +++    F  SPYYLRL FP  + 
Sbjct: 1   MITPRFSITQDEE--FIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELI 58

Query: 57  ETDHTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPV-------------KHRV 103
           + + ++ +YDS        V K+N  E+F DLDL +KLL                   + 
Sbjct: 59  DDERSTAQYDSKDECINVKVAKLNKNEYFEDLDLPTKLLARQGDLAGADALTENTDAKKT 118

Query: 104 AKPGIEVMSEPNNVSDEDEDE-------DDDTMWFIEQEPQHQPEENSTTYGYGFANKTK 156
            KP I+ + E + VS+  +D+        +   W IEQ+             YGF N   
Sbjct: 119 QKPLIQEV-ETDGVSNNIKDDVKTIGQMGEGFNWEIEQKMDSSTNNGILKTKYGFDN--- 174

Query: 157 GTLTNMKVTISKSDLGFDLEEL------ETAARIVEEEEVERALCN---HVSTLVLCSNS 207
             L +  +++S S+ G D+ EL      +   R++E    E    +   +VS  +     
Sbjct: 175 --LYDTVISVSTSN-GNDINELDDPEHTDANDRVIERLRKENLKFDPEYYVSEYMTHKYG 231

Query: 208 EQSERSIIFFIGLDFWVVS--RDYASDVRQAQDDRTQM----TPSELDTMK-QLGNREYL 260
            + +  I     L  +  S  + Y    + + +    M    T  E   M+  L  + YL
Sbjct: 232 NEEDLEINGIKELLKFTPSIVKQYLQWYKDSTNPNLVMPIEFTDEEQKQMQDNLPKKSYL 291

Query: 261 LSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQV-- 318
           +  E+   + ++++++L++Y ++     G HT ES WT+ KL   + +L     LKQV  
Sbjct: 292 V--EDIKPLYVTILSVLFSYVFEQIENEGTHTTESAWTMGKLCPQISFLDQ--QLKQVNE 347

Query: 319 ---------------------LISSMRRSLCYPLYREWRLSC 339
                                +I+ +RR+L YPL+R + L+ 
Sbjct: 348 LQDGMKEISKVNKDSSLIKIAIITGIRRALSYPLHRNYDLAM 389

Involved in the early biogenesis steps of box H/ACA snoRNP assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9VI74|SHQ1_DROME Protein SHQ1 homolog OS=Drosophila melanogaster GN=CG10055 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 32/216 (14%)

Query: 144 STTYGYGFANKTKGTLTNMKVTISKSDLGFDLEELETAARIVEEEEVERALCNHVSTLVL 203
           +  +GYG+A++  G L              DL EL+ A   V E      +      +V 
Sbjct: 202 TNNFGYGYASEYSGPL--------------DLSELDRATCRVSEPHRMSPIQRRQERVVD 247

Query: 204 CSNSEQSERSIIFFIGLDFWVVSRDYASDVR-QAQDDRTQMTPSE---LDTMKQLGNREY 259
                  E+  I F+ L    V   + + +R + +   T MT  +   L  + ++  RE 
Sbjct: 248 EMKRFSREQYKINFVELQ---VPSGHQNPLRYKPKIYETSMTQEQAHLLHNISRMQTRE- 303

Query: 260 LLSSEEKCAVL------LSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFT 313
               ++ C V         L++IL A CYDVRTT  E T ESGWT + L    C+ + F 
Sbjct: 304 ----QQPCDVFRQNEIDCGLISILLAICYDVRTTNNEPTCESGWTRSILCPLYCYFEQFD 359

Query: 314 SLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTIL 349
           + + VL++ +RR + YPLYR + L     +D   +L
Sbjct: 360 NYRDVLVAFLRRMITYPLYRNFELGRQCVRDAIEVL 395

Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs).

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
307196323	521	Protein SHQ1-like protein [Harpegnathos	0.805	0.629	0.434	1e-71
307180275	504	Protein SHQ1-like protein [Camponotus fl	0.953	0.769	0.373	2e-71
322790224	519	hypothetical protein SINV_05706 [Solenop	0.909	0.712	0.380	8e-70
345481226	532	PREDICTED: protein SHQ1 homolog [Nasonia	0.791	0.605	0.413	7e-68
383860776	521	PREDICTED: protein SHQ1 homolog [Megachi	0.899	0.702	0.371	1e-67
380020356	521	PREDICTED: LOW QUALITY PROTEIN: protein	0.909	0.710	0.368	7e-65
328784198	521	PREDICTED: protein SHQ1 homolog [Apis me	0.911	0.712	0.363	4e-64
332018136	448	Protein SHQ1-like protein [Acromyrmex ec	0.965	0.877	0.351	5e-62
350414575	524	PREDICTED: protein SHQ1 homolog [Bombus	0.911	0.708	0.350	6e-61
260822529	707	hypothetical protein BRAFLDRAFT_91747 [B	0.891	0.513	0.343	1e-56

>gi|307196323|gb|EFN77936.1| Protein SHQ1-like protein [Harpegnathos saltator]

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 157/361 (43%), Positives = 212/361 (58%), Gaps = 33/361 (9%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP FE+ Q+E +V I+I APY NI  TEVYV+ TDFRF S+PY+LRL  PG I+E D 
Sbjct: 1   MLTPRFEITQTETEVIIVIHAPYTNIKTTEVYVDGTDFRFYSTPYFLRLKLPGEIEENDS 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPN----- 115
           +SG YD +KG FT  + KVN GE+F +LD+I+  L PP KH +  P IEV+  P+     
Sbjct: 61  SSGSYDCEKGYFTLKLSKVNKGEYFENLDMITIFLEPPKKHNIIAPSIEVIGNPSTSSAD 120

Query: 116 ------NVSDEDEDEDDDT--MWFIEQEPQHQPEENST----TYGYGFANKTKGTLTNMK 163
                 N++D D     D+  +WFI   PQ Q  EN T    +  YGFANK  G L+  +
Sbjct: 121 IDGNLQNITDVDMSSGADSGDIWFI---PQKQAVENITLLTNSPKYGFANKISGALSAFE 177

Query: 164 VTISKSDLGFDLEELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFW 223
               K     D+ +L T        E+ER          L  + + +E   +       W
Sbjct: 178 PVWIK-----DIIDLPTPDIT---PEIERKTLRQ-----LHEDKDFNEDHYLADYFEPEW 224

Query: 224 VVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYD 283
                Y ++    Q D+      E+D +K+L N+EYLL +E+   + L+LV+ILYA CY+
Sbjct: 225 TEHIAYVAEWDTLQKDQIMFNEVEVDLLKELPNKEYLLEAEDIQKLCLNLVDILYANCYN 284

Query: 284 VRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQ 343
            RTT+GE+TVESGWT+NKLSS LCW Q+FTS+ +V+I+  RRSLCYPLYR W LS  + +
Sbjct: 285 RRTTLGENTVESGWTINKLSSTLCWFQNFTSMDEVIIACFRRSLCYPLYRNWELSMKVFE 344

Query: 344 D 344
           D
Sbjct: 345 D 345

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180275|gb|EFN68308.1| Protein SHQ1-like protein [Camponotus floridanus]

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 178/477 (37%), Positives = 250/477 (52%), Gaps = 89/477 (18%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP FE+ Q++ +V I I APYANI D EVYVE+TD RF ++PYYLRL  PG I+E + 
Sbjct: 1   MLTPRFEITQTDAEVVITIHAPYANIKDAEVYVEETDVRFYATPYYLRLQLPGEIEEDNS 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSDE 120
           +SG YD +KG F     KVN GEHF +LD+I+ LL PP K     P IEV+  P+  S  
Sbjct: 61  SSGSYDYEKGDFILHFSKVNKGEHFENLDMITVLLAPPKKKSTVIPNIEVIGNPSANSAN 120

Query: 121 DED-------------EDDDTMWFIEQEPQHQPEENSTTY----GYGFANKTKGTLTNMK 163
            +D             ED+   WFI   PQ+ P EN T       YGFANK  G LT  +
Sbjct: 121 IDDSLNDNDVTNNDDSEDN---WFI---PQNNPSENVTILINSPKYGFANKISGALTAFE 174

Query: 164 VTISKSDLGFDLEELETAA---RIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGL 220
               K  +  DL   +T     R   +E+ E    N    +      E  E  I +    
Sbjct: 175 TAWIKEII--DLPNPDTTPETERKSLQEKRELTDFNEEHYMADLMEPECIESYITY---- 228

Query: 221 DFWVVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAY 280
                + D+  D+   + D+   + +E+D +K+L N+EYLL +E+   + L+L++ILYA 
Sbjct: 229 -----TADW--DIMGLEKDKVTFSEAEIDLLKELPNKEYLLDAEDIKKLSLNLIDILYAS 281

Query: 281 CYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCA 340
           CY+ RTT+GE+TVES WT+NKLSS LCW ++FTS+ +++I+  RRSLCYPLYR W LS  
Sbjct: 282 CYNHRTTLGENTVESSWTINKLSSTLCWFRNFTSVDEIIIACFRRSLCYPLYRNWNLSMK 341

Query: 341 IQQDVNTILS--------------------------------QDILGY------------ 356
           + +DV  +++                                +D L +            
Sbjct: 342 VFEDVKKVITLGKKYIIKIFCEIHSLFNNSYEPRYILNQLYIKDFLIWLQASPESLIESL 401

Query: 357 -KVMKQVTISKSDLGFDLDELETAARIVEEEE--VERA---LCNHVSTLVLCSDSEQ 407
             ++K +  SK+ +G DL ELE AA  V+EE   +E A   +   +  L L +DSE+
Sbjct: 402 QSMLKDIHPSKASMGLDLVELEVAAYSVQEEGLVIENAVHEMVGQIDELCLNNDSEK 458

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790224|gb|EFZ15223.1| hypothetical protein SINV_05706 [Solenopsis invicta]

 Score =  270 bits (691), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 168/442 (38%), Positives = 231/442 (52%), Gaps = 72/442 (16%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP FE+ Q++EDVTII+ APYANI D E  V+ TDF F+++PY+LRL  PG ++E D 
Sbjct: 1   MLTPRFEITQTDEDVTIIVHAPYANIKDAEACVDGTDFLFTATPYFLRLQLPGKVEENDT 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPN----N 116
           + G YD +KG FT    KVN GEHF +L++I+ LL PP K     P IEV+  P+    +
Sbjct: 61  SFGSYDCEKGDFTLRFSKVNKGEHFDNLEMITTLLAPPKKKSTVIPNIEVIGNPSVASVD 120

Query: 117 VSDEDEDEDDDTMWFIEQEPQHQPEENSTTY----GYGFANKTKGTLTNMKVTISKS--D 170
           +S+ +   D    WF+   PQ     NST       YGFANK  G LT  +    K   D
Sbjct: 121 ISEGNAVADSGNNWFL---PQDNFAGNSTLLVNFPKYGFANKISGALTAFEAAWIKEIID 177

Query: 171 LGFDLEELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVSRDYA 230
           L      LET  + + E+   R L +              E  +   +  D       Y 
Sbjct: 178 LPTPDTTLETERKSLREQ---RELSDF-----------SEEHYMADLMQSDCIEPCITYT 223

Query: 231 SDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGE 290
            +    + D+     SE+D +K+L N+EYLL +E+   + L+LV+ILYA CY+ RTT+G+
Sbjct: 224 PEWDTLKKDQIAFNDSEVDLLKELPNKEYLLDAEDVQKLSLNLVDILYASCYNHRTTLGD 283

Query: 291 HTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILS 350
           +T ESGWT+NKLSS LCW Q+FTSL +V+ +  RRSLCYPLYR W LS  + +DV  +LS
Sbjct: 284 NTSESGWTINKLSSTLCWFQNFTSLDEVITACFRRSLCYPLYRNWELSLKVFEDVKQVLS 343

Query: 351 --------------------------------QDILGY-------------KVMKQVTIS 365
                                           +D L +               +  +  +
Sbjct: 344 LGRIYIVKRFCEIHNLFNTSYEPRYILNQLYIKDFLIWLQRIPESLIESLLSALSNINPN 403

Query: 366 KSDLGFDLDELETAARIVEEEE 387
           K  +G DL ELETAA  V+EE+
Sbjct: 404 KPSMGLDLVELETAAYSVQEED 425

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481226|ref|XP_001604098.2| PREDICTED: protein SHQ1 homolog [Nasonia vitripennis]

 Score =  264 bits (674), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 211/370 (57%), Gaps = 48/370 (12%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP FEL Q++ +VT++I APYANI DT V+V+ TDFRF S+PYYLRLN PG I+E D 
Sbjct: 1   MLTPRFELSQTDNEVTVVIHAPYANIKDTVVHVDGTDFRFYSTPYYLRLNLPGKIEENDA 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEP------ 114
           ++G YD +KG FT    KV+ GEHF +LD+I+ LL PP K     P IEV+S P      
Sbjct: 61  STGDYDCEKGDFTLKFSKVHKGEHFENLDMITTLLAPPKKKNNLVPTIEVISNPCATADE 120

Query: 115 ----NNVSDEDEDE-----DDDTMWFIEQEP--------QHQPEENSTTYGYGFANKTKG 157
               N  + EDE+E     D    W+ +Q P         H P+       YGFANK  G
Sbjct: 121 KINDNKTNGEDENESLMMGDAGNEWYTKQNPLTESIDISLHSPK-------YGFANKISG 173

Query: 158 TLTNMKVTISKSDLGFDLEE---LETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSI 214
            L   +    K  +   L +   LE   ++ E+ E+E     H    ++ S+S +     
Sbjct: 174 ALGAFEDGWIKEIVDLPLPDKTLLEDRKKLREQHELESFNEEHYMADLVESDSVKP---- 229

Query: 215 IFFIGLDFWVVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLV 274
                     ++ +   D   A+D   Q+T  E D +K+L N+EYLL   E    L S++
Sbjct: 230 ---------YLTYECEWDKLAAED--VQLTGEEKDLLKELPNKEYLLDENEIKTALYSMI 278

Query: 275 NILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYRE 334
           +IL+A CY+ RTT+G++TVESGWT+NKLSS L W QSFT+L   ++S+++RSLCYPL R 
Sbjct: 279 DILFASCYNCRTTLGDNTVESGWTINKLSSTLSWFQSFTNLNDAILSNIKRSLCYPLVRN 338

Query: 335 WRLSCAIQQD 344
           W LS  + +D
Sbjct: 339 WDLSMKVFED 348

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860776|ref|XP_003705865.1| PREDICTED: protein SHQ1 homolog [Megachile rotundata]

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 169/455 (37%), Positives = 235/455 (51%), Gaps = 89/455 (19%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP FE+ Q++ +V III APYANI DTEVYVE TDFRF S+PYYLRL  PG I+E D 
Sbjct: 1   MLTPRFEITQTDTEVVIIIHAPYANIKDTEVYVEGTDFRFYSTPYYLRLKLPGEIEENDS 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEP------ 114
           + G YD +KG F     KVN GE+F +LD+IS LL P  K  +  P IEV+  P      
Sbjct: 61  SFGSYDCEKGDFCLRFSKVNQGEYFENLDMISTLLAPSKKKNINVPNIEVIGNPSANSED 120

Query: 115 --------NNVSDEDEDEDDDTMWFIEQEPQHQPEEN----STTYGYGFANKTKGTLTNM 162
                   NN+ DE+ + D+   W+I    Q+ P E     S++  YGFANK  G L   
Sbjct: 121 INEVSNECNNILDENTNGDE---WYIH---QNNPNETVPLLSSSPKYGFANKISGALVAF 174

Query: 163 KVTISKSDLGFDLEEL-ETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLD 221
           + +  K  +   + ++   + R +  E+ E +  N    L      E  E  I+F    D
Sbjct: 175 ESSWIKEVIDLPMPDVTPQSERKILREKRELSDFNEEHYLADLMQPECIEPYIMFTAEWD 234

Query: 222 FWVVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYC 281
                          + D       E+D +K+L N+EYLL++EE   +LLSLV+IL+  C
Sbjct: 235 -------------NLEKDNISFNEIEVDLLKELPNKEYLLNNEETHKLLLSLVDILFGNC 281

Query: 282 YDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAI 341
           Y+ RTT+GE+TVES WTVNKLSS L W   F++ ++V+ +  RRS+CYPL+R W+LS  +
Sbjct: 282 YNHRTTLGENTVESSWTVNKLSSTLTWFDDFSTPEEVVRACFRRSICYPLFRNWKLSTKV 341

Query: 342 QQDVNTILSQDILGYK---------------------VMKQVTI---------------- 364
            +DV  ++    LG K                     ++ Q+ I                
Sbjct: 342 FEDVKKVIK---LGKKYIIKRFCEIHGMFNNSCEPRYILNQLYIKDYLIWLQQINESLIE 398

Query: 365 -----------SKSDLGFDLDELETAARIVEEEEV 388
                      SK ++G DL ELE AA  V+EE++
Sbjct: 399 LLDSLIANIQPSKEEMGLDLIELEQAAYSVQEEDL 433

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020356|ref|XP_003694053.1| PREDICTED: LOW QUALITY PROTEIN: protein SHQ1 homolog [Apis florea]

 Score =  254 bits (648), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 228/448 (50%), Gaps = 78/448 (17%)

Query: 2   LTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHT 61
           LTP FE+ Q++ +V III APYANI DTEVYV+ TDFRF S+PYYLRL  PG I+E D +
Sbjct: 18  LTPRFEISQTDTEVAIIIHAPYANIKDTEVYVDATDFRFYSTPYYLRLKLPGEIEENDSS 77

Query: 62  SGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEP------- 114
            G YD +KG FT    KV  GE+F +LD+IS LL PP K     P IEV+  P       
Sbjct: 78  FGSYDCEKGDFTLKFTKVIKGEYFENLDMISTLLAPPKKKGTIVPNIEVIGNPSANSEDI 137

Query: 115 NNVSDE------DEDEDDDTMWFIEQEPQHQPEENSTTYGYGFANKTKGTLTNMKVTISK 168
           N++S+E      DE+ + D  W++ Q          T+  YGFANK  G L   +    K
Sbjct: 138 NDISNESDFISNDENTNGDE-WYMHQNNVQTVSLLPTSPKYGFANKISGALAAFESAWIK 196

Query: 169 SDLGFDLEELETAA-RIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVSR 227
             +   + +    + R    E+ E +  N    L      +  E  I F    D      
Sbjct: 197 EXIDLPMPDTTPQSERKKLREKREISDFNEEHYLADLMQPDCIEPYISFITEWD------ 250

Query: 228 DYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTT 287
                    + +      +E+D +K+L N+EYLL++EE   +LLSLV+IL+A CY+ RTT
Sbjct: 251 -------TLKKENVSFNETEVDLLKELPNKEYLLNNEETHKLLLSLVDILFASCYNHRTT 303

Query: 288 MGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNT 347
           +GE+TVES WT+NKLSS L W   F+  ++V+ +  RRS+CYPL+R W+LS  I +DV  
Sbjct: 304 LGENTVESSWTINKLSSTLSWFDDFSDSEEVIKTCFRRSICYPLFRNWKLSIKIFEDVRK 363

Query: 348 ILSQDILGYK---------------------VMKQVTI---------------------- 364
           ++    LG K                     ++ Q+ I                      
Sbjct: 364 VIK---LGKKYIIKRFCEIHNLFNNSCEPRYILNQLYIKDYLIWLQQINESLIESLESLI 420

Query: 365 ----SKSDLGFDLDELETAARIVEEEEV 388
               SK D+  DL ELE AA  V+EE++
Sbjct: 421 IFLPSKEDMQLDLAELEQAAYSVQEEDL 448

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784198|ref|XP_623827.3| PREDICTED: protein SHQ1 homolog [Apis mellifera]

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 163/449 (36%), Positives = 227/449 (50%), Gaps = 78/449 (17%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP FE+ Q++ +V I I APYANI DTEVYV+ TDFRF S+PYYLRL  PG I+E D 
Sbjct: 1   MLTPRFEISQTDTEVAITIHAPYANIKDTEVYVDATDFRFYSTPYYLRLKLPGEIEENDS 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEP------ 114
           + G YD +KG FT    KV  GE+F +LD+IS LL PP K     P IEV+  P      
Sbjct: 61  SFGSYDCEKGDFTLKFTKVIKGEYFENLDMISTLLAPPKKKGTIVPNIEVIGNPSANSED 120

Query: 115 -NNVSDE------DEDEDDDTMWFIEQEPQHQPEENSTTYGYGFANKTKGTLTNMKVTIS 167
            N++S+E      DE+ + D  W++ Q          T+  YGFANK  G L   +    
Sbjct: 121 INDISNEPDFISNDENTNGDE-WYMHQNNVQTVSLLPTSPKYGFANKISGALAAFESAWI 179

Query: 168 KSDLGFDL-EELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVS 226
           K  +   + +    + R    E+ E +  N    L      +  E  I F    D     
Sbjct: 180 KEIIDLPMPDSTPQSERKKLREKREISDFNEEHYLADLMQPDCIEPYISFITEWD----- 234

Query: 227 RDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRT 286
                     + +      +E+D +K+L N+EYLL++EE   +LL LV+IL+A CY+ RT
Sbjct: 235 --------TLKKENVSFNETEVDLLKELPNKEYLLNNEETHKLLLGLVDILFASCYNHRT 286

Query: 287 TMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVN 346
           T+GE+TVES WT+NKLSS L W   F+  ++V+ +  RRS+CYPL+R W+LS  I +D+ 
Sbjct: 287 TLGENTVESSWTINKLSSTLSWFDDFSDSEEVIKTCFRRSICYPLFRNWKLSIKIFEDIK 346

Query: 347 TILSQDILGYK---------------------VMKQVTI--------------------- 364
            ++    LG K                     ++ Q+ I                     
Sbjct: 347 KVIK---LGKKYIIKCFCEIHNLFNNSCEPRYILNQLYIKDYLIWLQQINESLIESLESL 403

Query: 365 -----SKSDLGFDLDELETAARIVEEEEV 388
                SK D+  DL ELE AA  V+EE++
Sbjct: 404 IIFLPSKEDMQLDLTELEQAAYSVQEEDL 432

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018136|gb|EGI58745.1| Protein SHQ1-like protein [Acromyrmex echinatior]

 Score =  244 bits (623), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 228/461 (49%), Gaps = 68/461 (14%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP F + Q++E VTIII APYANI D E+Y +  DF F S+PY+L+L  PG IK+ D 
Sbjct: 1   MLTPRFGITQTDEVVTIIIHAPYANIKDAEMYADGIDFLFYSTPYFLKLQLPGKIKDNDS 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSDE 120
            SG YD DKG FT +  KVN GEHF +L++I+ LL P  K  V  P IEV+  P+ V+  
Sbjct: 61  FSGTYDCDKGDFTLSFSKVNKGEHFENLEMITSLLAPKKKSTVI-PNIEVIGNPS-VALA 118

Query: 121 DEDEDDDTMWFIEQEPQHQPEENSTTY-----GYGFANKTKGTLTNMKVTISKSDLGFDL 175
           D  E++         P       S T       YGFANK  G L   +    K  +    
Sbjct: 119 DMSENNTNNSGNNCFPSQDNFVGSATNLINSPKYGFANKISGALAAFEDIWIKEIIDLPT 178

Query: 176 EELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVVSRDYASDVRQ 235
            ++          EVER        L    N    E  +   +  D       Y ++   
Sbjct: 179 PDVTP--------EVERKSLREQREL----NDFSEEHYMADLMESDVMKPCLIYQAEWDT 226

Query: 236 AQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVES 295
            Q D+   + +E+D +K+L N+EYLL+ E+   +  +LV+ILYA CY+ RTT GE++ ES
Sbjct: 227 LQKDQIAFSKAEIDLLKELPNKEYLLNVEDVEKLCFNLVDILYANCYNHRTTFGENSSES 286

Query: 296 GWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILS----- 350
           GWT+NKLSS LCW Q+F SL +V+ + +RR+LCYPL+R W LS  + +DV  +LS     
Sbjct: 287 GWTINKLSSTLCWFQNFASLDEVITACIRRALCYPLHRNWELSIKLLEDVKKVLSLGRKY 346

Query: 351 ---------------------------QDIL-------------GYKVMKQVTISKSDLG 370
                                      +D L              Y  +  V  +K ++G
Sbjct: 347 VVKRFCEIHSLFNNSFEPRYILNQLYIKDFLIWLQTLPDSVIESVYSALSNVHPNKENMG 406

Query: 371 FDLDELETAARIVEE----EEVERALCNHVSTLVLCSDSEQ 407
            +L ELE AA  V+E    E     + N++  L +  D ++
Sbjct: 407 LELVELEMAAYSVQEDFVIENAIHKMTNNIEALSMNGDKQK 447

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414575|ref|XP_003490358.1| PREDICTED: protein SHQ1 homolog [Bombus impatiens]

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 230/451 (50%), Gaps = 80/451 (17%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP FE+ Q++ +V III APYANI DTEVYV+ TDFRF S+PYYLRL  PG I+E D 
Sbjct: 1   MLTPRFEITQTDTEVAIIIHAPYANIKDTEVYVDGTDFRFYSTPYYLRLRLPGEIEENDS 60

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEP------ 114
           + G YD +KG F+    KV  GE+F +LD+IS LL PP K     P IEV+  P      
Sbjct: 61  SFGSYDCEKGDFSLRFSKVVKGEYFENLDMISTLLAPPKKKSTIVPNIEVIGNPSANSED 120

Query: 115 -NNVSDE------DEDEDDDTMWFIEQEPQHQPEE-NSTTYGYGFANKTKGTLTNMKVTI 166
            N++ +E      DE+ + D  W++ Q+   +       +  YGFANK    L   +   
Sbjct: 121 INDIPNEHEFTPNDENTNGDE-WYMHQDNTIETVPLLPVSPKYGFANKISVALAAFESAW 179

Query: 167 SKSDLGFDLEE-LETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFFIGLDFWVV 225
            K  +   + + +  + R    E+ E +  N    L      E  E  I+F         
Sbjct: 180 IKEIIDLPMPDTIPQSERRKLREKREISDFNEEHYLADLMQPECIEPYILF--------- 230

Query: 226 SRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVR 285
               +++    + +      +++D +K+L N+EYLL++EE   +LL L++IL+  CY+ R
Sbjct: 231 ----SAEWDTLKKEDISFNETQVDLLKELPNKEYLLNNEETHKLLLGLMDILFGCCYNHR 286

Query: 286 TTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDV 345
           TT+GE+TVES WT+NKLSS LCW   F+  ++V+ +  RRS+CYPL+R W LS  + +DV
Sbjct: 287 TTLGENTVESSWTINKLSSTLCWFDEFSDAEEVVKACFRRSICYPLFRNWDLSKKVFEDV 346

Query: 346 NTILSQDILGYK---------------------VMKQVTI-------------------- 364
             ++    LG K                     ++ Q+ I                    
Sbjct: 347 KKVIK---LGKKYIIKHFCEVHSLFNNSCEPRYILNQLYIKDYLIWLQQINESLIESLES 403

Query: 365 -------SKSDLGFDLDELETAARIVEEEEV 388
                  SK D+  DL ELE AA  V+EE++
Sbjct: 404 LIANVQPSKDDMQLDLAELEQAAYSVQEEDL 434

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260822529|ref|XP_002606654.1| hypothetical protein BRAFLDRAFT_91747 [Branchiostoma floridae] gi|229291998|gb|EEN62664.1| hypothetical protein BRAFLDRAFT_91747 [Branchiostoma floridae]

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 157/457 (34%), Positives = 230/457 (50%), Gaps = 94/457 (20%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
           MLTP F++ Q    + I+I+AP A ++DTEVY+EDT+F+F S PYYLRLN PG + E   
Sbjct: 26  MLTPRFDISQDRNSLKIVIRAPCARVSDTEVYIEDTEFKFYSKPYYLRLNLPGKVVEDGR 85

Query: 61  TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSDE 120
               YD+D+G FT  V K   GEHF  LDL++KLL P         G    +       +
Sbjct: 86  EKATYDADRGTFTVLVPKECPGEHFEGLDLLTKLLAP--------KGTRSAAGAGADDAK 137

Query: 121 DEDEDDDTMWFIEQEP--QHQPE-ENSTTYGYGFANKTKGTLTNMKVTISKSDLGFDLEE 177
           DE+E+++  W +EQ P  ++QP+ E      YGFAN+  G  + ++            EE
Sbjct: 138 DEEEEEEIDWQVEQVPWWENQPQAEVQPGMKYGFANRRSGVFSKLQ------------EE 185

Query: 178 LETAARIVEEEEVERALCNHVSTLVLCSNSEQ-----------SERSIIFFIG------- 219
           L+    + E + +  A C       L +  EQ            + +I   +G       
Sbjct: 186 LQDVVDVREPDRLTHAECREAR---LAAELEQFDPDHYLADLYEDDAIQELLGYKPPWTE 242

Query: 220 ----LDFWVVSRDYASDVRQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVN 275
               L   V+  D ++D  Q  ++    +  E + +  L  REYLL  +    V  SLV+
Sbjct: 243 ELHKLKTKVLGTDCSTD--QPGEEAVVFSEEEKEQLLSLPKREYLLDGKTLPVVCFSLVD 300

Query: 276 ILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREW 335
           IL+AY Y+ RTT GE  VES WT+ KLS+ L WL+SF+SL++ ++SS RRSL +PLYR W
Sbjct: 301 ILFAYAYNYRTTEGEGNVESAWTICKLSATLSWLESFSSLREAVLSSCRRSLGFPLYRSW 360

Query: 336 RLSCAIQQD------------------VNTILSQD-------------------ILGYKV 358
            L+ A+ QD                  ++++LS D                     G KV
Sbjct: 361 DLTRAVLQDTMDIITSGRRRILRCLLHIHSLLSADDNKYLLNDLYITDYCVWVQTAGDKV 420

Query: 359 -------MKQVTISKSDLGFDLDELETAARIVEEEEV 388
                  + ++ +SKS++  DL+ELE AAR+V+EEEV
Sbjct: 421 FCSMALALTEIHLSKSEMNLDLEELEHAARLVQEEEV 457

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
MGI|MGI:1919421	569	Shq1 "SHQ1 homolog (S. cerevis	0.410	0.293	0.358	2.5e-49
UNIPROTKB|Q6PI26	577	SHQ1 "Protein SHQ1 homolog" [H	0.395	0.279	0.389	4e-49
UNIPROTKB|Q05B18	604	shq1 "Protein SHQ1 homolog" [X	0.390	0.263	0.363	9.4e-49
UNIPROTKB|Q3MHH1	579	SHQ1 "Protein SHQ1 homolog" [B	0.405	0.284	0.370	7.3e-47
UNIPROTKB|E2QW11	579	SHQ1 "Uncharacterized protein"	0.405	0.284	0.376	8.4e-47
ZFIN|ZDB-GENE-070112-1412	586	shq1 "SHQ1 homolog (S. cerevis	0.828	0.575	0.338	1e-45
UNIPROTKB|F1SFN0	579	SHQ1 "Uncharacterized protein"	0.407	0.286	0.368	1.8e-44
UNIPROTKB|E1C0W2	580	SHQ1 "Uncharacterized protein"	0.407	0.286	0.339	1.3e-43
POMBASE|SPBC8D2.13	451	shq1 "box H/ACA snoRNP assembl	0.297	0.268	0.390	8.1e-35
UNIPROTKB|Q9TYM6	431	Y48A5A.1 "Protein SHQ1 homolog	0.402	0.380	0.318	5.9e-32

MGI|MGI:1919421 Shq1 "SHQ1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 276 (102.2 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
 Identities = 61/170 (35%), Positives = 90/170 (52%)

Query:     1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
             MLTP FEL Q  + +T+ I+ P+A  ++ +VY E  DF+F + PY+LRL  PG I E   
Sbjct:     1 MLTPAFELTQDCDFLTVAIRVPHARASEFDVYFEGVDFKFYAKPYFLRLTLPGRIVENGS 60

Query:    61 TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSXX 120
               G YD+DKG FT  + K   G+HF  L++++ LL P  K R AKP +E +         
Sbjct:    61 EQGTYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPR-KSRSAKPLVEEIGASGVAEEG 119

Query:   121 XXXXXXXTMWFIEQEPQHQPEENS--TTYGYGFANKTKGTLTNMKVTISK 168
                      W IEQ P  +  E++  +   YGF N   G +  ++  +S+
Sbjct:   120 ADDEDEEFDWEIEQTPYEEVSESTLQSQCHYGFGNLRAGVVQRLQDELSE 169

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0022618 "ribonucleoprotein complex assembly" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:2000233 "negative regulation of rRNA processing" evidence=ISO

UNIPROTKB|Q6PI26 SHQ1 "Protein SHQ1 homolog" [Homo sapiens (taxid:9606)]

 Score = 282 (104.3 bits), Expect = 4.0e-49, Sum P(3) = 4.0e-49
 Identities = 67/172 (38%), Positives = 94/172 (54%)

Query:     1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
             MLTP F+L Q  + +TI I+ PYA +++ +VY E +DF+F + PY+LRL  PG I E   
Sbjct:     1 MLTPAFDLSQDPDFLTIAIRVPYARVSEFDVYFEGSDFKFYAKPYFLRLTLPGRIVENGS 60

Query:    61 TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVM--SE-PNNV 117
               G YD+DKG FT  + K   G+HF  L++++ LL P  K R AKP +E +  SE P  V
Sbjct:    61 EQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPR-KSRTAKPLVEEIGASEIPEEV 119

Query:   118 SXXXXXXXXXTMWFIEQEPQHQPEENSTT--YGYGFANKTKGTLTNMKVTIS 167
                         W IEQ P  +  E++      YGF N   G L  ++  +S
Sbjct:   120 VDDEEFD-----WEIEQTPCEEVSESALNPQCHYGFGNLRSGVLQRLQDELS 166

GO:0005829 "cytosol" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0022618 "ribonucleoprotein complex assembly" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:2000233 "negative regulation of rRNA processing" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q05B18 shq1 "Protein SHQ1 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 270 (100.1 bits), Expect = 9.4e-49, Sum P(3) = 9.4e-49
 Identities = 60/165 (36%), Positives = 88/165 (53%)

Query:     1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
             M+TP F++ Q  + +TIIIK PYA  ++ ++Y+E  DF+F + PY+LRL  PG I E   
Sbjct:     1 MITPAFDISQDSDFLTIIIKVPYARASEIDIYIEGDDFKFYAKPYFLRLALPGRIVEDGR 60

Query:    61 TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSXX 120
                 Y++D G  T +V K   G+HF  LDL++ LL P    + AKP +E +   +NV   
Sbjct:    61 QKATYNADDGIITVSVPKETPGQHFEGLDLLTSLLAPRGS-KSAKPLVEEIGSSDNVVEE 119

Query:   121 XXXXXXXTMWFIEQEPQHQPEENS--TTYGYGFANKTKGTLTNMK 163
                      W IEQ P  +P E +  +   YGF N   G    ++
Sbjct:   120 EEDEFD---WQIEQTPFVEPTEEALQSQCTYGFGNLRSGVFRRLQ 161

GO:0022618 "ribonucleoprotein complex assembly" evidence=ISS

UNIPROTKB|Q3MHH1 SHQ1 "Protein SHQ1 homolog" [Bos taurus (taxid:9913)]

 Score = 286 (105.7 bits), Expect = 7.3e-47, Sum P(2) = 7.3e-47
 Identities = 63/170 (37%), Positives = 92/170 (54%)

Query:     1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
             MLTP F+L Q  + +T+ I+ PYA +++ +VY E  DF+F + PY+LRL  PG I E  +
Sbjct:     1 MLTPAFDLSQDPDFLTVAIRVPYARVSEFDVYFEGVDFKFYAKPYFLRLTLPGRIVENGN 60

Query:    61 TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSXX 120
               G YD+DKG FT  + K   G+HF  L++++ LL P  K R AKP +E +   + VS  
Sbjct:    61 EQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPR-KSRTAKPLVEEIGA-SEVSEG 118

Query:   121 XXXXXXXTM-WFIEQEPQHQPEENSTTYG--YGFANKTKGTLTNMKVTIS 167
                       W IEQ P  +  E++      YGF N   G    ++  +S
Sbjct:   119 GVEDDDDEFDWEIEQSPYEEVPESALNPNCRYGFGNLRSGVFQRLQDELS 168

GO:0022618 "ribonucleoprotein complex assembly" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=IEA

GO:2000233 "negative regulation of rRNA processing" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

UNIPROTKB|E2QW11 SHQ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 293 (108.2 bits), Expect = 8.4e-47, Sum P(2) = 8.4e-47
 Identities = 64/170 (37%), Positives = 91/170 (53%)

Query:     1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
             MLTP F+L Q    +T+ I+ PYA +++ +VY E  DFRF + PY+LRL  PG + E   
Sbjct:     1 MLTPAFDLSQDPAFLTVAIRVPYARVSEFDVYFEGVDFRFYAKPYFLRLTLPGRVVENGS 60

Query:    61 TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSXX 120
               G YD+DKG FT  + K   G+HF  L++++ LL P  K R AKP +E +   + VS  
Sbjct:    61 EQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPR-KSRTAKPLVEEIGA-SEVSEE 118

Query:   121 XXXXXXXTM-WFIEQEPQHQPEENSTT--YGYGFANKTKGTLTNMKVTIS 167
                       W IEQ P  +  E++    Y YGF N   G    ++  +S
Sbjct:   119 RVEEEDEEFDWEIEQSPYEEASESALNPQYHYGFGNLRSGVFQRLQDELS 168

GO:2000233 "negative regulation of rRNA processing" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0022618 "ribonucleoprotein complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

ZFIN|ZDB-GENE-070112-1412 shq1 "SHQ1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 119/352 (33%), Positives = 175/352 (49%)

Query:     1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
             M+TP FEL Q  + + ++I+ PY   +D ++Y+++ +F+F + PY+LRL  PG I E   
Sbjct:     1 MITPAFELSQDADFLIVVIRVPYTRTSDFDIYIQEEEFKFYAKPYFLRLTLPGRIVEDGR 60

Query:    61 TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSXX 120
                 +D DKG FT  V K   G+HF  L++++ LL P    R AKP +E  SE       
Sbjct:    61 EKASFDIDKGLFTLHVPKETAGQHFEGLEMLTSLLAPKGS-RSAKPLVED-SEACGEGCE 118

Query:   121 XXXXXXXTMWFIEQEPQHQ-PEENSTTYG-YGFANKTKGTLTNMKVTISKS-DLGFDLXX 177
                      W IEQE   + P +    Y  YGF N   G  + ++  +++  D+      
Sbjct:   119 EEDEEFD--WQIEQEVYTEAPADTLKEYHKYGFGNLRSGVFSRLQEELNEVIDMKDPDNT 176

Query:   178 XXXXXXXXXXXXXXXXXC-NHVSTLVLCSNSEQSERSIIFFIGLDFWVVSRDYASDVRQA 236
                              C +H   LV     ++  R+++ F    +W   R    D    
Sbjct:   177 NAELRRRNRLDTETAVFCADHY--LVNLYEDKEEIRNLLKF--KPWW---RKLNPDPSAG 229

Query:   237 QDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESG 296
              D     T  E + M++  NR YLL  + +  V L LV+I+ AY YDVRTT GEH VES 
Sbjct:   230 YDISMTFTEEEREQMRRFTNRSYLLDKKARFHVWLGLVDIILAYVYDVRTTEGEHNVESA 289

Query:   297 WTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTI 348
             WT+ KLS  L WL+++ S++ VL+S  RR+LCYPLYR + L     +D   I
Sbjct:   290 WTIRKLSGTLSWLETYHSVQDVLVSFGRRTLCYPLYRHFSLVTLAVKDAACI 341

GO:0003674 "molecular_function" evidence=ND

GO:0022618 "ribonucleoprotein complex assembly" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

UNIPROTKB|F1SFN0 SHQ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 274 (101.5 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 63/171 (36%), Positives = 91/171 (53%)

Query:     1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
             MLTP F+L Q  + +TI I+ PYA +++ +VY E  DF+F + PY+LRL  PG I E   
Sbjct:     1 MLTPAFDLSQDPDFLTIAIRVPYARVSEFDVYFEGLDFKFYAKPYFLRLTLPGRIVENGR 60

Query:    61 TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSXX 120
               G YD+DKG FT  + K   G+HF  L++++ LL P  K R AK  +E +   + VS  
Sbjct:    61 EQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPR-KSRTAKLLVEEIGV-SEVSEE 118

Query:   121 XXXXXXXTM-WFIEQEPQHQPEENSTT--YGYGFANKTKGTLTNMKVTISK 168
                       W IEQ P  +  E++      YGF N   G    ++  +S+
Sbjct:   119 GVEDDDEEFDWEIEQSPYEEVPESALNPECRYGFGNLRSGVFQRLQDELSE 169

GO:2000233 "negative regulation of rRNA processing" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0022618 "ribonucleoprotein complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

UNIPROTKB|E1C0W2 SHQ1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 257 (95.5 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
 Identities = 58/171 (33%), Positives = 87/171 (50%)

Query:     1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
             M+TP FEL Q  + +T+II+ PYA +++ +++ E  DF+F + PY+LRL  PG + E   
Sbjct:     1 MITPDFELSQDPDFLTVIIRVPYARVSELDLFFEGEDFKFYAKPYFLRLTLPGRVVEDGR 60

Query:    61 TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIE-VMSEPNNVSX 119
                 YD+DKG FT  + K + G++F  LD+++ LL P  K R AKP +E +      V  
Sbjct:    61 EKASYDTDKGVFTIQLPKESPGQYFEGLDMLTSLLAPK-KSRTAKPLVEEIDGGSKGVPA 119

Query:   120 XXXXXXXXTM-WFIEQEPQHQPEENSTTYG--YGFANKTKGTLTNMKVTIS 167
                        W IEQ    +  E        YGF N   G    ++  +S
Sbjct:   120 EEEEEEEEEFDWEIEQTLYKEAAEGPVPLQCYYGFGNLRSGVFQRLQDELS 170

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0022618 "ribonucleoprotein complex assembly" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:2000233 "negative regulation of rRNA processing" evidence=IEA

POMBASE|SPBC8D2.13 shq1 "box H/ACA snoRNP assembly protein Shq1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 233 (87.1 bits), Expect = 8.1e-35, Sum P(3) = 8.1e-35
 Identities = 50/128 (39%), Positives = 77/128 (60%)

Query:   228 DYASD---VRQAQDDRT-QMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYD 283
             DY  +   V+Q + DR  + T  E + + +L  R YL+ + +   V L LV +++AY YD
Sbjct:   236 DYIGEFLLVQQGKSDRLLEFTSEEKEALAKLPKRSYLIDNPKN--VYLCLVPLIFAYAYD 293

Query:   284 VRTTMGEHTVESGWTVNKLSSAL-CWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQ 342
              RTT+G+ T+ES W +  LSS + C   +F ++K + I+ +RRSL YPLYR W L+    
Sbjct:   294 NRTTLGDPTIESCWNIGTLSSTISCLDTNFLAIKDIFIACIRRSLAYPLYRNWDLALTCW 353

Query:   343 QDVNTILS 350
             +D + ILS
Sbjct:   354 KDTHAILS 361

GO:0000493 "box H/ACA snoRNP assembly" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=IC

UNIPROTKB|Q9TYM6 Y48A5A.1 "Protein SHQ1 homolog" [Caenorhabditis elegans (taxid:6239)]

 Score = 223 (83.6 bits), Expect = 5.9e-32, Sum P(2) = 5.9e-32
 Identities = 56/176 (31%), Positives = 97/176 (55%)

Query:     1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDH 60
             MLTP+F + Q ++ + I I+AP+ NIA+ +    D  F F+  PY+LRL+F   ++E   
Sbjct:     1 MLTPVFWITQDDDALLIRIRAPHGNIAELDYDHGDYMFVFTCPPYFLRLHFKQMVEEYGS 60

Query:    61 TSG--KYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKP-GIEVMSEPNNV 117
              +G  ++ SD+G+F   V K++  EHF +LD+I++LL P   H   +P G +++ E ++ 
Sbjct:    61 GNGSVEWKSDEGEFHIKVPKMHKKEHFSNLDMITELLTPSTTHH--QPHGNQLVEEMDD- 117

Query:   118 SXXXXXXXXXTMWFIEQEPQHQPEENSTT-----YGYGFANKTKGTLTNMKVTISK 168
                       + + +EQ+P  +PEE  +      +GYGF     G +  ++  I K
Sbjct:   118 -SEDDDEGDGSEFLVEQQPAAEPEEPKSDGKIEKFGYGFGWSKFGVIERLRDEIGK 172

GO:0022618 "ribonucleoprotein complex assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05B18	SHQ1_XENTR	No assigned EC number	0.3251	0.9385	0.6324	yes	N/A
Q7TMX5	SHQ1_MOUSE	No assigned EC number	0.3126	0.9115	0.6520	yes	N/A
A1L1R0	SHQ1_DANRE	No assigned EC number	0.3261	0.8648	0.6017	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	407
pfam04925	185	pfam04925, SHQ1, SHQ1 protein	5e-39
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	0.002

>gnl|CDD|218330 pfam04925, SHQ1, SHQ1 protein

 Score =  138 bits (349), Expect = 5e-39
 Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 2/116 (1%)

Query: 234 RQAQDDRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTV 293
           +   +   + T  E + ++ L  + YL+  +++  V L LV+IL+AYCYD R T GEH V
Sbjct: 5   KSKFNLPVEFTDEEQEQLRNLPKKSYLIDDKKE--VYLGLVDILFAYCYDQRVTEGEHNV 62

Query: 294 ESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTIL 349
           ES WT+ KLS  L WL SF+++K  LI+ +RR+L YPLYR + L+  + +DV  IL
Sbjct: 63  ESAWTIGKLSPQLSWLDSFSNVKDALIAFIRRALTYPLYRNFDLAQKVWKDVYYIL 118

S. cerevisiae SHQ1 protein is required for SnoRNAs of the box H/ACA Quantitative accumulation (unpublished). Length = 185

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 10 QSEEDVTIIIKAPYANIADTEVYVEDTDFRFS-----SSPYYLRLNFPGPIKETDHTSGK 64
          Q+ ++VTI I        D +V         S        Y L     GPI   D    K
Sbjct: 3  QTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPI---DPEESK 59

Query: 65 YDSDKGQFTFTVIKVNTGEHFPDL 88
          +  +  +   T+ K   GE +P L
Sbjct: 60 WTVEDRKIEITLKKKEPGEWWPRL 83

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	407
KOG3247|consensus	466		100.0
PF04925	189	SHQ1: SHQ1 protein; InterPro: IPR007009 This conse	100.0
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.02
cd06463	84	p23_like Proteins containing this p23_like domain	98.75
cd00298	80	ACD_sHsps_p23-like This domain family includes the	98.17
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	98.17
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	98.13
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	98.1
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	98.0
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	97.75
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	97.75
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	97.62
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	97.56
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	97.46
cd06488	87	p23_melusin_like p23_like domain similar to the C-	97.44
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	97.41
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	97.39
COG0071	146	IbpA Molecular chaperone (small heat shock protein	97.34
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	97.08
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	96.94
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	96.94
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	96.9
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	96.89
PRK11597	142	heat shock chaperone IbpB; Provisional	96.79
PRK10743	137	heat shock protein IbpA; Provisional	96.76
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	96.19
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	95.99
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	95.86
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	95.77
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	95.38
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.77
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	94.23
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	92.76
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	91.23
KOG3158|consensus	180		89.29
KOG1309|consensus	196		89.14
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	88.55
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	88.04

>KOG3247|consensus

Probab=100.00  E-value=2.7e-105  Score=798.85  Aligned_cols=359  Identities=33%  Similarity=0.561  Sum_probs=327.8

Q ss_pred             CCCceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeecCceeeecCCCCcccCCCCcceeeCCCcEEEEEEeccC
Q psy5045           1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVN   80 (407)
Q Consensus         1 MiTP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~   80 (407)
                      ||||+|++|||++|++++|++|+.+++++|+.+.+++|.||+.||||||+|||.+.++++..|+||+.+|.++||+||.+
T Consensus         1 Mltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK~~K~~   80 (466)
T KOG3247|consen    1 MLTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAGPYFLRLAGPGMVEDDARPNASYDAKDGYAHVKVPKFH   80 (466)
T ss_pred             CCCceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccchhHHhhcCcchhhhhccccCccccccceeEEeecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcchhhhcCCCCCCCCCCCceEEcCCCCCCC-------CCcc----------ccCCcCCceecccCCCCCCCC
Q psy5045          81 TGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVS-------DEDE----------DEDDDTMWFIEQEPQHQPEEN  143 (407)
Q Consensus        81 ~Ge~F~dLDm~tkLLap~~~~~~~~plIe~i~~~~~~~-------~~~~----------~~~e~~dw~ieQ~~~~~~~~~  143 (407)
                      |||||+||||+||||+|+++.+.++||+|+++.+...+       +.++          .++++|+|+++|.+.+.....
T Consensus        81 ~~e~F~~Ldllt~lL~~q~~~~~~~~LvEe~~~se~P~~~~~~~~g~~e~~k~d~~ti~~d~~eFdWeieq~~dee~~~~  160 (466)
T KOG3247|consen   81 PGEHFSDLDLLTKLLTPQNKSPTAKPLVEEAGDSEIPGGERGGGGGTEEAAKQDLPTISVDDEEFDWEIEQTPDEETREY  160 (466)
T ss_pred             ccccccchhhhHHhcccCCcccccchhhhhhccCCCCcccccCCCCchhhhhhcccccccCCccccceeccccccccccc
Confidence            99999999999999999888999999999887654442       1122          567889999999965443333


Q ss_pred             CCCCcccCCCCcccccccchhhhccCCCCCCcccccCccch--HHHHHHHHh------CcchhhhcccccCchhhhhhhh
Q psy5045         144 STTYGYGFANKTKGTLTNMKVTISKSDLGFDLEELETAARI--VEEEEVERA------LCNHVSTLVLCSNSEQSERSII  215 (407)
Q Consensus       144 ~~~~~YGF~n~~sg~f~~l~~e~i~~~~g~dI~dl~dPe~t--~eR~~~Rl~------D~d~YlaD~~~~ede~i~~lL~  215 (407)
                      ...++|||+|.|||++.+++.    +  ||||++|++||+|  .+|+++|++      |||||+||||  +.+.+  +|+
T Consensus       161 ~l~~~YGF~n~ysgvl~~~~~----~--~n~i~~i~ePe~t~~~~R~~eRv~~E~~kFD~e~Yladf~--e~e~~--~l~  230 (466)
T KOG3247|consen  161 KLTFGYGFGNLYSGVLDRSEL----E--GNDINDISEPERTPPIQRRQERVVDEMEKFDPEHYLADFV--ELEVI--ILH  230 (466)
T ss_pred             ceeecccccccccchhhhhhh----c--cccccccCCcccCCHHHHHHHHHHHHHhccCHHHhHHhhh--hhhhh--hcc
Confidence            345899999999999999863    3  7889999999999  999999999      9999999999  88888  999


Q ss_pred             ccccccc----cccccccchhhhcccCCCCCCCHHHHHHHhh-cCCccccCChhhHHHHHHHHHHHHHHhhheeeecCCC
Q psy5045         216 FFIGLDF----WVVSRDYASDVRQAQDDRTQMTPSELDTMKQ-LGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGE  290 (407)
Q Consensus       216 ~~p~~~~----w~~~~~~~~~~~~~~~~~~~fT~eE~~~L~~-Lp~keyl~~~~~~~~l~l~LvdILfAY~Yd~R~teGe  290 (407)
                      |.|++.+    |+++         .+..+++||+|||.||++ +|+|+|++++  .+.+|++++|||||||||+|||+||
T Consensus       231 ~~P~~~k~~l~~~~~---------k~~~~~eftdeer~ql~d~~p~ksyl~~~--~~~~~i~~~~ilfaycYd~r~t~ge  299 (466)
T KOG3247|consen  231 YNPWRIKEKLYVTSM---------KSEQLLEFTDEERMQLRDQLPKKSYLQDN--IKCVYICLSDILFAYCYDQRTTEGE  299 (466)
T ss_pred             cChHHHHHHHHHhhh---------ccccccccchHHHHHHHhhcccchhhhcC--CCceEEeehhhhhhhhhheeccCCC
Confidence            9998653    3332         233479999999999995 9999999975  6889999999999999999999999


Q ss_pred             CCccccchhhhhccccccccCcCCHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHHhh--------------------
Q psy5045         291 HTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILS--------------------  350 (407)
Q Consensus       291 ~tvES~WTI~KLSptLS~ld~~~~l~~vlia~~RRsL~YPLyRnf~L~~kv~~Dv~~iL~--------------------  350 (407)
                      |||||||||.+|||.+|||.+|.++++++|||+||+|||||||||+|++|||+||++||+                    
T Consensus       300 ~t~ES~Wn~~~lspi~c~feqf~nv~dilva~~RR~LtYPLYRnf~Lamk~~~d~~~IL~~Gk~~vl~~LLdiH~~F~~~  379 (466)
T KOG3247|consen  300 PTCESGWNIRLLSPILCLFEQFTNVKDILVAFIRRALTYPLYRNFDLAMKAWRDTIKILQLGKRAVLRCLLDIHKIFQEH  379 (466)
T ss_pred             cchhhccchhccChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999998                    


Q ss_pred             -----------hhhhH-------------HHhhhhccccccccCCChHHHHHHH
Q psy5045         351 -----------QDILG-------------YKVMKQVTISKSDLGFDLDELETAA  380 (407)
Q Consensus       351 -----------~DYcv-------------~~~l~~~~i~K~~lgl~LeelE~aa  380 (407)
                                 .|||+             |.+|+++.|+|.++||+||+||++|
T Consensus       380 d~~Yi~N~l~l~DY~~Wiqs~~s~vl~~LA~~lkevsitK~~lglelEeiEa~~  433 (466)
T KOG3247|consen  380 DVYYILNDLYLSDYIVWIQSVKSNVLAALAEALKEVSITKAQLGLELEEIEAEA  433 (466)
T ss_pred             cHHHHHHHHHHHhhhhheeccChHHHHHHHHHHHHhhhhHHhcCCcHHHHHHHh
Confidence                       69998             8889999999999999999999998

>PF04925 SHQ1: SHQ1 protein; InterPro: IPR007009 This conserved region identifies a set of hypothetical protein sequences from the Metazoa and Ascomycota which include SHQ1 from Saccharomyces cerevisiae

Probab=100.00  E-value=3.7e-51  Score=379.59  Aligned_cols=112  Identities=52%  Similarity=0.929  Sum_probs=86.0

Q ss_pred             CCCCCCHHHHHHHhhcCCccccCChhhHHHHHHHHHHHHHHhhheeeecCCCCCccccchhhhhccccccccCcCCHHHH
Q psy5045         239 DRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQV  318 (407)
Q Consensus       239 ~~~~fT~eE~~~L~~Lp~keyl~~~~~~~~l~l~LvdILfAY~Yd~R~teGe~tvES~WTI~KLSptLS~ld~~~~l~~v  318 (407)
                      .+++||+||+++|++||||+||+++...+.+|+||||||||||||+|+|+||||+||||||+||||||||||+|+++++|
T Consensus        10 ~~~eft~eE~~~l~~Lp~k~yl~~~~~~~~~~~~LvdILfAY~Yd~R~~~Ge~~~ES~WtI~kLSptls~ld~~~~v~~~   89 (189)
T PF04925_consen   10 KPVEFTEEEQEQLKNLPKKEYLISDEEEKQLYLGLVDILFAYCYDQRTTEGEHNVESAWTIGKLSPTLSWLDQFSSVKEV   89 (189)
T ss_dssp             T-----HHHHHHHHHS-------S----HHHHHHHHHHHHHHHHHHHHTTT---TTHHHHHHHH-HHHHT--SHHHHHHH
T ss_pred             CCCCCCHHHHHHHHhCCCchhcCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhHHHHHHhccCcHHHH
Confidence            48999999999999999999999987889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhcccccchhHHHHHHHHHHHHHHhh
Q psy5045         319 LISSMRRSLCYPLYREWRLSCAIQQDVNTILS  350 (407)
Q Consensus       319 lia~~RRsL~YPLyRnf~L~~kv~~Dv~~iL~  350 (407)
                      |++|+||||||||||||+|+++||+||++||+
T Consensus        90 li~~~RRsL~yPL~R~~~L~~~v~~Dv~~iL~  121 (189)
T PF04925_consen   90 LIACIRRSLCYPLYRNFDLAMKVWKDVYYILR  121 (189)
T ss_dssp             HHHHHHHHTTSSS---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998

; PDB: 3ZV0_A 3ZUZ_A 3UAH_A 3UAI_D.

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.02  E-value=1.4e-09  Score=86.10  Aligned_cols=76  Identities=25%  Similarity=0.516  Sum_probs=66.9

Q ss_pred             eecCCeEEEEEecccccCCcceEEEeCcEEEEeecCceeeecCCCCcccCCCCcceeeCCCcEEEEEEeccCCCCCCCCC
Q psy5045           9 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGEHFPDL   88 (407)
Q Consensus         9 tQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~~Ge~F~dL   88 (407)
                      .|+++.|+|.|.+|.++..++++.+.++.|.++++||++.++||+.|. .+.+++++  ++|.+.|+|||+.+| .++.|
T Consensus         2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~~~~~~~~l~~~I~-~e~~~~~~--~~~~l~i~L~K~~~~-~W~~L   77 (78)
T cd06469           2 SQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLFELDLAAPID-DEKSSAKI--GNGVLVFTLVKKEPG-IWEAL   77 (78)
T ss_pred             cccCCEEEEEEEeCCCccccceEEEecCEEEEcCCCEEEEEeCccccc-ccccEEEE--eCCEEEEEEEeCCCC-ccccc
Confidence            699999999999999999999999999999999999999999999994 44455554  568999999999986 66665

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=98.75  E-value=4.7e-08  Score=76.69  Aligned_cols=77  Identities=26%  Similarity=0.396  Sum_probs=69.8

Q ss_pred             eecCCeEEEEEecccccCCcceEEEeCcEEEEee-----cCceeeecCCCCcccCCCCcceeeCCCcEEEEEEeccCCCC
Q psy5045           9 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-----SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGE   83 (407)
Q Consensus         9 tQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-----~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~~Ge   83 (407)
                      +|+++.|+|.|.+|.+...++++.+.++.+.+.+     .+|++.+.|+++|..++   ++|...+|.+.|+|+|..+|+
T Consensus         2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~---s~~~~~~~~l~i~L~K~~~~~   78 (84)
T cd06463           2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEE---SKWTVEDRKIEITLKKKEPGE   78 (84)
T ss_pred             cccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhh---cEEEEeCCEEEEEEEECCCCC
Confidence            6999999999999999999999999999999887     68999999999998763   556667899999999999999


Q ss_pred             CCCCC
Q psy5045          84 HFPDL   88 (407)
Q Consensus        84 ~F~dL   88 (407)
                      .++.|
T Consensus        79 ~W~~l   83 (84)
T cd06463          79 WWPRL   83 (84)
T ss_pred             CCccc
Confidence            99876

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=98.17  E-value=6.1e-06  Score=62.82  Aligned_cols=67  Identities=19%  Similarity=0.372  Sum_probs=59.4

Q ss_pred             eecCCeEEEEEecccccCCcceEEEeCcEEEEe------------ecCceeeecCCCCcccCCCCcceeeCCCcEEEEEE
Q psy5045           9 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFS------------SSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTV   76 (407)
Q Consensus         9 tQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~------------~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~l   76 (407)
                      .|+++.++|.|.+|.....++.+.++++.+.+.            ..+|++++.||+.+..+ ..+++|+  +|.++|++
T Consensus         2 ~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~-~~~~~~~--~~~l~i~l   78 (80)
T cd00298           2 YQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPE-KSKASLE--NGVLEITL   78 (80)
T ss_pred             EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHH-HCEEEEE--CCEEEEEE
Confidence            689999999999999999999999999999998            46999999999999876 3555555  59999999


Q ss_pred             ec
Q psy5045          77 IK   78 (407)
Q Consensus        77 pK   78 (407)
                      ||
T Consensus        79 ~K   80 (80)
T cd00298          79 PK   80 (80)
T ss_pred             cC
Confidence            98

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=98.17  E-value=1.4e-05  Score=64.24  Aligned_cols=80  Identities=20%  Similarity=0.329  Sum_probs=70.7

Q ss_pred             eEeeecCCeEEEEEeccc-ccCCcceEEEeCcEEEEeec--CceeeecCCCCcccCCCCcceeeCCC-cEEEEEEeccCC
Q psy5045           6 FELLQSEEDVTIIIKAPY-ANIADTEVYVEDTDFRFSSS--PYYLRLNFPGPIKETDHTSGKYDSDK-GQFTFTVIKVNT   81 (407)
Q Consensus         6 F~itQd~~fv~I~I~~p~-~~~~~~ei~vd~~~F~F~~~--PYyLRL~fp~~lved~~~~a~Yd~d~-g~~tv~lpKe~~   81 (407)
                      |.-+|+++.|+|.|.+|. ++..++.+.+.++-+.+..+  +|+|-++|.++|..++   +.|..++ ..+.|+|+|+.+
T Consensus         1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~---s~w~~~~~~~v~i~L~K~~~   77 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDE---STWTLEDGKLLEITLEKRNE   77 (85)
T ss_pred             CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcC---CEEEEeCCCEEEEEEEECCC
Confidence            456899999999999985 68999999999999999986  7889999999999876   5688888 999999999999


Q ss_pred             CCCCCCC
Q psy5045          82 GEHFPDL   88 (407)
Q Consensus        82 Ge~F~dL   88 (407)
                      |...+.|
T Consensus        78 ~~~W~~L   84 (85)
T cd06467          78 GEWWPSL   84 (85)
T ss_pred             Ccccccc
Confidence            8888765

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=98.13  E-value=1.8e-05  Score=61.60  Aligned_cols=72  Identities=24%  Similarity=0.426  Sum_probs=63.0

Q ss_pred             ceeEeeecCCeEEEEEec-cc-ccCCcceEEEeCcEEEEeec-----CceeeecCCCCcccCCCCcceeeCCCcEEEEEE
Q psy5045           4 PMFELLQSEEDVTIIIKA-PY-ANIADTEVYVEDTDFRFSSS-----PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTV   76 (407)
Q Consensus         4 P~F~itQd~~fv~I~I~~-p~-~~~~~~ei~vd~~~F~F~~~-----PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~l   76 (407)
                      |+|.-.|+++.|+|.|.+ |. ++..++.+.+.++.+.+.++     +|++.+.|.|+|..++   ++|...++.+.|+|
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~---s~~~~~~~~i~i~L   77 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDE---STWKVKDNKIEITL   77 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCC---EEEEEETTEEEEEE
T ss_pred             CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchh---cEEEEECCEEEEEE
Confidence            899999999999999999 44 46999999999999999985     8999999999999875   67888888999999


Q ss_pred             ec
Q psy5045          77 IK   78 (407)
Q Consensus        77 pK   78 (407)
                      .|
T Consensus        78 ~K   79 (79)
T PF04969_consen   78 KK   79 (79)
T ss_dssp             EB
T ss_pred             EC
Confidence            88

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=98.10  E-value=1.2e-05  Score=64.14  Aligned_cols=77  Identities=27%  Similarity=0.403  Sum_probs=68.0

Q ss_pred             eeecCCeEEEEEecccccCCcceEEEeCcEEEEee-----cCceeeecCCCCcccCCCCcceeeCCCcEEEEEEeccCCC
Q psy5045           8 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-----SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTG   82 (407)
Q Consensus         8 itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-----~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~~G   82 (407)
                      -.|+++.|+|.|.+|-+...++.+.+.++.+.|.+     ++|.+.+.|++.|..+   .++|-..++.+.|+|.|+.+|
T Consensus         2 W~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~---~s~~~~~~~~vei~L~K~~~~   78 (84)
T cd06466           2 WYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPE---QSKVSVLPTKVEITLKKAEPG   78 (84)
T ss_pred             ccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCch---hcEEEEeCeEEEEEEEcCCCC
Confidence            36999999999999998889999999999999976     3799999999999865   467888899999999999985


Q ss_pred             CCCCCC
Q psy5045          83 EHFPDL   88 (407)
Q Consensus        83 e~F~dL   88 (407)
                       .++.|
T Consensus        79 -~W~~L   83 (84)
T cd06466          79 -SWPSL   83 (84)
T ss_pred             -CCccC
Confidence             77766

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=98.00  E-value=4.1e-05  Score=64.91  Aligned_cols=80  Identities=29%  Similarity=0.443  Sum_probs=71.1

Q ss_pred             ceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeec--C----ceeeecCCCCcccCCCCcceeeCCCcEEEEEEe
Q psy5045           4 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS--P----YYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVI   77 (407)
Q Consensus         4 P~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~--P----YyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lp   77 (407)
                      |.|.-.|+.+.|+|.|.+|.+  .++.+.+..+.+.|.+.  +    |+|-+.|.++|..++   ++|....+.+.|+|.
T Consensus         1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~---s~~~v~~~kveI~L~   75 (108)
T cd06465           1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEE---SKYKVTGRQIEFVLR   75 (108)
T ss_pred             CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccc---cEEEecCCeEEEEEE
Confidence            778899999999999999987  88999999999999875  2    999999999998764   678888899999999


Q ss_pred             ccCCCCCCCCC
Q psy5045          78 KVNTGEHFPDL   88 (407)
Q Consensus        78 Ke~~Ge~F~dL   88 (407)
                      |+.+|+..+.|
T Consensus        76 K~~~~~~W~~L   86 (108)
T cd06465          76 KKEAGEYWPRL   86 (108)
T ss_pred             ECCCCCCCccc
Confidence            99966678777

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=97.75  E-value=9.1e-05  Score=73.42  Aligned_cols=67  Identities=28%  Similarity=0.476  Sum_probs=61.5

Q ss_pred             ecCCeEEEEEecccc-cCCcceEEEeCcEEEEeecC--ceeeecCCCCcccCCCCcceeeCCCcEEEEEEe
Q psy5045          10 QSEEDVTIIIKAPYA-NIADTEVYVEDTDFRFSSSP--YYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVI   77 (407)
Q Consensus        10 Qd~~fv~I~I~~p~~-~~~~~ei~vd~~~F~F~~~P--YyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lp   77 (407)
                      .-.+.|.|.|..|-+ .++++++.|.++.....+..  |+|+|.||++|-+ +.++|.||.++++++|+||
T Consensus       258 ~~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~~V~~-~~~~Akf~~~~~~L~vtlp  327 (328)
T PF08190_consen  258 GSPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPYPVDE-DNGKAKFDKKTKTLTVTLP  327 (328)
T ss_pred             CCCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCCcccC-CCceEEEccCCCEEEEEEE
Confidence            346899999999998 79999999999999999999  9999999997765 4588999999999999998

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=97.75  E-value=0.00018  Score=58.55  Aligned_cols=80  Identities=19%  Similarity=0.319  Sum_probs=68.7

Q ss_pred             eEeeecCCeEEEEEecc-cccCCcceEEEeCcEEEEeec--CceeeecCCCCcccCCCCcceeeCCCc-EEEEEEeccCC
Q psy5045           6 FELLQSEEDVTIIIKAP-YANIADTEVYVEDTDFRFSSS--PYYLRLNFPGPIKETDHTSGKYDSDKG-QFTFTVIKVNT   81 (407)
Q Consensus         6 F~itQd~~fv~I~I~~p-~~~~~~~ei~vd~~~F~F~~~--PYyLRL~fp~~lved~~~~a~Yd~d~g-~~tv~lpKe~~   81 (407)
                      |.-+|+++.|+|.|.+| .++..++.+.+..+-+.++.+  +.++-..|.++|.-|+   ++|-..++ .+.|+|.|..+
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~---Stw~i~~~~~l~i~L~K~~~   77 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHES---STWIIKENKSLEVSLIKKDE   77 (85)
T ss_pred             CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccC---cEEEEeCCCEEEEEEEECCC
Confidence            34589999999999996 678999999999999999986  5778889999998776   56887555 69999999999


Q ss_pred             CCCCCCC
Q psy5045          82 GEHFPDL   88 (407)
Q Consensus        82 Ge~F~dL   88 (407)
                      |+.++.|
T Consensus        78 ~~~W~~L   84 (85)
T cd06493          78 GPTWPEL   84 (85)
T ss_pred             Ccccccc
Confidence            9888765

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=97.62  E-value=0.00028  Score=57.07  Aligned_cols=76  Identities=21%  Similarity=0.298  Sum_probs=67.0

Q ss_pred             eecCCeEEEEEecccccCCcceEEEeCcEEEEee-----cCceeeecCCCCcccCCCCcceeeCCCcEEEEEEeccCCCC
Q psy5045           9 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-----SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGE   83 (407)
Q Consensus         9 tQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-----~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~~Ge   83 (407)
                      .|++++|+|.|.++-+...++.+.+.++.+.|.+     +.|.+-+.|.+.|..+   .++|....+.+.|+|.|+.+ .
T Consensus         3 ~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~---~s~~~v~~~kiei~L~K~~~-~   78 (84)
T cd06489           3 YQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPE---QSSYKILSTKIEIKLKKTEA-I   78 (84)
T ss_pred             cccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecch---hcEEEEeCcEEEEEEEcCCC-C
Confidence            5999999999999988889999999999999976     4799999999999865   36798889999999999974 5


Q ss_pred             CCCCC
Q psy5045          84 HFPDL   88 (407)
Q Consensus        84 ~F~dL   88 (407)
                      .++.|
T Consensus        79 ~W~~L   83 (84)
T cd06489          79 RWSKL   83 (84)
T ss_pred             CCccC
Confidence            78776

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=97.56  E-value=0.00051  Score=56.19  Aligned_cols=80  Identities=16%  Similarity=0.266  Sum_probs=68.9

Q ss_pred             eeEeeecCCeEEEEEecccccC---CcceEEEeCcEEEEeec-----Cceeeec-CCCCcccCCCCcceeeCCCcEEEEE
Q psy5045           5 MFELLQSEEDVTIIIKAPYANI---ADTEVYVEDTDFRFSSS-----PYYLRLN-FPGPIKETDHTSGKYDSDKGQFTFT   75 (407)
Q Consensus         5 ~F~itQd~~fv~I~I~~p~~~~---~~~ei~vd~~~F~F~~~-----PYyLRL~-fp~~lved~~~~a~Yd~d~g~~tv~   75 (407)
                      +|.-+|.++.|+|.|.+|.+..   .++++.+..+.|.|.+.     +|.|.+. |-++|..++   ++|......+.|+
T Consensus         3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~---s~~~~~~~ki~i~   79 (92)
T cd06468           3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEK---SSFKVKTDRIVIT   79 (92)
T ss_pred             eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccc---cEEEEeCCEEEEE
Confidence            4677999999999999999865   89999999999999873     5888885 999998875   6788889999999


Q ss_pred             EeccCCCCCCCCC
Q psy5045          76 VIKVNTGEHFPDL   88 (407)
Q Consensus        76 lpKe~~Ge~F~dL   88 (407)
                      |.|+.+ +.++.|
T Consensus        80 L~K~~~-~~W~~L   91 (92)
T cd06468          80 LAKKKE-KKWESL   91 (92)
T ss_pred             EEeCCC-CccCcc
Confidence            999998 467665

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=97.46  E-value=0.00088  Score=57.47  Aligned_cols=80  Identities=18%  Similarity=0.184  Sum_probs=69.7

Q ss_pred             ceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeec-----CceeeecCCCCcccCCCCcceeeCCCcEEEEEEec
Q psy5045           4 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS-----PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIK   78 (407)
Q Consensus         4 P~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~-----PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpK   78 (407)
                      |...--|..+.|+|+|.+|-  +.++.+.+.++.+.|.++     .|++-|.|=+.|..++   ++|....-.+.|+|.|
T Consensus         2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~---Sk~~v~~r~ve~~L~K   76 (106)
T cd00237           2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPND---SKHKRTDRSILCCLRK   76 (106)
T ss_pred             CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCccc---CeEEeCCceEEEEEEe
Confidence            55667799999999999997  689999999999999983     4999999999997654   6799999999999999


Q ss_pred             cCCCCCCCCC
Q psy5045          79 VNTGEHFPDL   88 (407)
Q Consensus        79 e~~Ge~F~dL   88 (407)
                      ...|+..+-|
T Consensus        77 ~~~~~~WprL   86 (106)
T cd00237          77 GKEGVAWPRL   86 (106)
T ss_pred             CCCCCCCchh
Confidence            9988777654

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=97.44  E-value=0.00085  Score=55.01  Aligned_cols=80  Identities=15%  Similarity=0.167  Sum_probs=68.4

Q ss_pred             eeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee-----cCceeeecCCCCcccCCCCcceeeCCCcEEEEEEecc
Q psy5045           5 MFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-----SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKV   79 (407)
Q Consensus         5 ~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-----~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe   79 (407)
                      ||.--|.+++|+|+|.+..+....+.+.++.+...|.+     ++|-+.|.|-|+|..+.   ++|.+....+-|+|.|+
T Consensus         2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~---s~~~v~~~kvei~L~K~   78 (87)
T cd06488           2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEK---SSVNMLPTKVEIKLRKA   78 (87)
T ss_pred             CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhH---cEEEecCcEEEEEEEeC
Confidence            56778999999999999988888899999887755543     47999999999998654   78999999999999999


Q ss_pred             CCCCCCCCC
Q psy5045          80 NTGEHFPDL   88 (407)
Q Consensus        80 ~~Ge~F~dL   88 (407)
                      .+| .++.|
T Consensus        79 ~~~-~W~~L   86 (87)
T cd06488          79 EPG-SWAKL   86 (87)
T ss_pred             CCC-cCccC
Confidence            976 77766

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=97.41  E-value=0.00049  Score=54.59  Aligned_cols=68  Identities=18%  Similarity=0.294  Sum_probs=60.1

Q ss_pred             eeecCCeEEEEEecccccCCcceEEEeCcEEEEe-------------------ecCceeeecCCCCcccCCCCcceeeCC
Q psy5045           8 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFS-------------------SSPYYLRLNFPGPIKETDHTSGKYDSD   68 (407)
Q Consensus         8 itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~-------------------~~PYyLRL~fp~~lved~~~~a~Yd~d   68 (407)
                      +.++++.++|.|.+|.++..++++.++++...-+                   ...|..++.||..+-.+ ..+|+|+- 
T Consensus         2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~-~i~a~~~~-   79 (88)
T cd06464           2 VYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPD-KIKASLEN-   79 (88)
T ss_pred             cEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHH-HcEEEEeC-
Confidence            5678899999999999999999999999887777                   78899999999988776 66777775 


Q ss_pred             CcEEEEEEec
Q psy5045          69 KGQFTFTVIK   78 (407)
Q Consensus        69 ~g~~tv~lpK   78 (407)
                       |.++|++||
T Consensus        80 -G~L~I~~pk   88 (88)
T cd06464          80 -GVLTITLPK   88 (88)
T ss_pred             -CEEEEEEcC
Confidence             999999998

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=97.39  E-value=0.00052  Score=56.40  Aligned_cols=71  Identities=14%  Similarity=0.282  Sum_probs=57.4

Q ss_pred             ceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee----------------------cCceeeecCCCCcccCCCC
Q psy5045           4 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS----------------------SPYYLRLNFPGPIKETDHT   61 (407)
Q Consensus         4 P~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~----------------------~PYyLRL~fp~~lved~~~   61 (407)
                      |+..|..+++.++|.+.+|-++..++++.++|+...-..                      ..|--++.|| . ++-+..
T Consensus         1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~-v~~~~i   78 (93)
T cd06471           1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-N-VDEEEI   78 (93)
T ss_pred             CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-C-CCHHHC
Confidence            567899999999999999999999999999998776632                      2334456788 4 455557


Q ss_pred             cceeeCCCcEEEEEEec
Q psy5045          62 SGKYDSDKGQFTFTVIK   78 (407)
Q Consensus        62 ~a~Yd~d~g~~tv~lpK   78 (407)
                      +|+|  ++|.++|++||
T Consensus        79 ~A~~--~dGvL~I~lPK   93 (93)
T cd06471          79 KAKY--ENGVLKITLPK   93 (93)
T ss_pred             EEEE--ECCEEEEEEcC
Confidence            8888  79999999998

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0011  Score=59.36  Aligned_cols=78  Identities=19%  Similarity=0.345  Sum_probs=68.8

Q ss_pred             CCceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee--------------------cCceeeecCCCCcccCCCC
Q psy5045           2 LTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS--------------------SPYYLRLNFPGPIKETDHT   61 (407)
Q Consensus         2 iTP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~--------------------~PYyLRL~fp~~lved~~~   61 (407)
                      .+|...|.++++.+.|.+-+|-++-.+++|.++++.+.-..                    ..|..++.||..+-.+ ..
T Consensus        39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~-~~  117 (146)
T COG0071          39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPE-VI  117 (146)
T ss_pred             CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccccccc-ce
Confidence            58999999999999999999999999999999999776554                    4478899999999887 47


Q ss_pred             cceeeCCCcEEEEEEeccCCC
Q psy5045          62 SGKYDSDKGQFTFTVIKVNTG   82 (407)
Q Consensus        62 ~a~Yd~d~g~~tv~lpKe~~G   82 (407)
                      +|+|.  +|.++|+|||..+-
T Consensus       118 ~A~~~--nGvL~I~lpk~~~~  136 (146)
T COG0071         118 KAKYK--NGLLTVTLPKAEPE  136 (146)
T ss_pred             eeEee--CcEEEEEEeccccc
Confidence            78875  99999999998874

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=97.08  E-value=0.0029  Score=52.21  Aligned_cols=70  Identities=16%  Similarity=0.328  Sum_probs=59.5

Q ss_pred             ceeEeeec-CCeEEEEEecccccCCcceEEEeCcEEEEe-------------------ecCceeeecCCCCcccCCCCcc
Q psy5045           4 PMFELLQS-EEDVTIIIKAPYANIADTEVYVEDTDFRFS-------------------SSPYYLRLNFPGPIKETDHTSG   63 (407)
Q Consensus         4 P~F~itQd-~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~-------------------~~PYyLRL~fp~~lved~~~~a   63 (407)
                      |...|.++ ++...|.+.+|-++-.+++|.++|+..+-.                   ...|.-++.||..+-.+   +|
T Consensus         1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~---~A   77 (90)
T cd06470           1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK---GA   77 (90)
T ss_pred             CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC---ee
Confidence            67889886 489999999999999999999999877766                   57788999999987542   56


Q ss_pred             eeeCCCcEEEEEEec
Q psy5045          64 KYDSDKGQFTFTVIK   78 (407)
Q Consensus        64 ~Yd~d~g~~tv~lpK   78 (407)
                      +|  ++|.++|+||+
T Consensus        78 ~~--~~GvL~I~l~~   90 (90)
T cd06470          78 EL--ENGLLTIDLER   90 (90)
T ss_pred             EE--eCCEEEEEEEC
Confidence            65  59999999985

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=96.94  E-value=0.0056  Score=50.55  Aligned_cols=80  Identities=15%  Similarity=0.218  Sum_probs=68.7

Q ss_pred             eEeeecCCeEEEEEeccc---ccCCcceEEEeCcEEEEeec--CceeeecCCCCcccCCCCcceeeCCCc-EEEEEEecc
Q psy5045           6 FELLQSEEDVTIIIKAPY---ANIADTEVYVEDTDFRFSSS--PYYLRLNFPGPIKETDHTSGKYDSDKG-QFTFTVIKV   79 (407)
Q Consensus         6 F~itQd~~fv~I~I~~p~---~~~~~~ei~vd~~~F~F~~~--PYyLRL~fp~~lved~~~~a~Yd~d~g-~~tv~lpKe   79 (407)
                      |.-+|+.+-|.|.|.+|.   ++++++.+.+.-+.+++..+  |++|-=.|.++|.-|+   +.+-.++| .+.|.|-|.
T Consensus         1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~de---s~Wtled~~~l~i~L~K~   77 (87)
T cd06492           1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEE---SSWLIEDGKVVTVNLEKI   77 (87)
T ss_pred             CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccc---cEEEEeCCCEEEEEEEEC
Confidence            345899999999999865   78999999999999999986  6899999999999887   55777665 799999999


Q ss_pred             CCCCCCCCC
Q psy5045          80 NTGEHFPDL   88 (407)
Q Consensus        80 ~~Ge~F~dL   88 (407)
                      ++|+..+-|
T Consensus        78 ~~~~wW~~l   86 (87)
T cd06492          78 NKMEWWSRL   86 (87)
T ss_pred             CCCcccccc
Confidence            999887754

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=96.94  E-value=0.0059  Score=50.53  Aligned_cols=73  Identities=19%  Similarity=0.412  Sum_probs=57.5

Q ss_pred             EeeecCCeEEEEEecccccCCcceEEEeCcEEEEee------------------cCceeeecCCCCcccCCCCcceeeCC
Q psy5045           7 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS------------------SPYYLRLNFPGPIKETDHTSGKYDSD   68 (407)
Q Consensus         7 ~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~------------------~PYyLRL~fp~~lved~~~~a~Yd~d   68 (407)
                      .|.++++++.|.+.+|-+...++.+.++++.....+                  .+|.-++.||..+ +.+.-+|+|  .
T Consensus         1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~v-d~~~i~a~~--~   77 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDV-DPDKIKASY--E   77 (102)
T ss_dssp             EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB--GGG-EEEE--T
T ss_pred             CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcC-CcceEEEEe--c
Confidence            478999999999999999999999999988766544                  3567789999975 556677888  8


Q ss_pred             CcEEEEEEeccCCC
Q psy5045          69 KGQFTFTVIKVNTG   82 (407)
Q Consensus        69 ~g~~tv~lpKe~~G   82 (407)
                      +|.++|++||....
T Consensus        78 ~GvL~I~~pk~~~~   91 (102)
T PF00011_consen   78 NGVLTITIPKKEEE   91 (102)
T ss_dssp             TSEEEEEEEBSSSC
T ss_pred             CCEEEEEEEccccc
Confidence            99999999999886

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=96.90  E-value=0.0035  Score=51.61  Aligned_cols=70  Identities=26%  Similarity=0.335  Sum_probs=57.3

Q ss_pred             eEeeecCCeEEEEEecccccCCcceEEEeCc-EEEEe--------------------ecCceeeecCCCCcccCCCCcce
Q psy5045           6 FELLQSEEDVTIIIKAPYANIADTEVYVEDT-DFRFS--------------------SSPYYLRLNFPGPIKETDHTSGK   64 (407)
Q Consensus         6 F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~-~F~F~--------------------~~PYyLRL~fp~~lved~~~~a~   64 (407)
                      ..+..+++.++|.+.+|-++..+++|.++++ ..+..                    ...|.-++.||..+- -+..+|+
T Consensus         2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~-~~~i~A~   80 (92)
T cd06472           2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENAD-ADEVKAF   80 (92)
T ss_pred             ccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCC-HHHCEEE
Confidence            4678899999999999999999999999864 44333                    347888899999864 4557788


Q ss_pred             eeCCCcEEEEEEec
Q psy5045          65 YDSDKGQFTFTVIK   78 (407)
Q Consensus        65 Yd~d~g~~tv~lpK   78 (407)
                      |+  +|.++|+|||
T Consensus        81 ~~--nGvL~I~lPK   92 (92)
T cd06472          81 LE--NGVLTVTVPK   92 (92)
T ss_pred             EE--CCEEEEEecC
Confidence            86  7999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=96.89  E-value=0.0071  Score=50.76  Aligned_cols=83  Identities=16%  Similarity=0.242  Sum_probs=68.9

Q ss_pred             CceeEeeecCCeEEEEEeccc-ccCCcceEEEeCcEEEEeecCc-eeeecCCCCcccCCCCcceeeCCCcE-EEEEEecc
Q psy5045           3 TPMFELLQSEEDVTIIIKAPY-ANIADTEVYVEDTDFRFSSSPY-YLRLNFPGPIKETDHTSGKYDSDKGQ-FTFTVIKV   79 (407)
Q Consensus         3 TP~F~itQd~~fv~I~I~~p~-~~~~~~ei~vd~~~F~F~~~PY-yLRL~fp~~lved~~~~a~Yd~d~g~-~tv~lpKe   79 (407)
                      |+.+.-+|+.+-|.|.|.+|. ++++++.+.+..+-+++.++.- +|-=.|.++|.-|+   +.+-.+.+. +.|+|.|.
T Consensus         5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~~l~G~L~~~I~~de---stWtled~k~l~I~L~K~   81 (93)
T cd06494           5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQEVLKGKLFDSVVADE---CTWTLEDRKLIRIVLTKS   81 (93)
T ss_pred             CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEEEEcCcccCccCccc---CEEEEECCcEEEEEEEeC
Confidence            788999999999999999776 7899999999999999987632 55557888888877   668887777 79999999


Q ss_pred             C--CCCCCCCC
Q psy5045          80 N--TGEHFPDL   88 (407)
Q Consensus        80 ~--~Ge~F~dL   88 (407)
                      +  +|+-++.|
T Consensus        82 ~~~~~~~W~sl   92 (93)
T cd06494          82 NRDAGNCWKSL   92 (93)
T ss_pred             CCCCCcccccc
Confidence            6  55666654

Little is known about the function of the proteins in this subgroup.

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=96.79  E-value=0.0069  Score=54.70  Aligned_cols=73  Identities=12%  Similarity=0.320  Sum_probs=61.8

Q ss_pred             CceeEeee-cCCeEEEEEecccccCCcceEEEeCcEEEEeec------------------CceeeecCCCCcccCCCCcc
Q psy5045           3 TPMFELLQ-SEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS------------------PYYLRLNFPGPIKETDHTSG   63 (407)
Q Consensus         3 TP~F~itQ-d~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~------------------PYyLRL~fp~~lved~~~~a   63 (407)
                      .|...|.. +++.+.|.+-+|-++-.+++|.|+++..+-...                  .|.-+++||..|-.+   +|
T Consensus        32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~---~A  108 (142)
T PRK11597         32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS---GA  108 (142)
T ss_pred             CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC---cC
Confidence            48889997 578999999999999999999999998776654                  466779999998554   58


Q ss_pred             eeeCCCcEEEEEEeccC
Q psy5045          64 KYDSDKGQFTFTVIKVN   80 (407)
Q Consensus        64 ~Yd~d~g~~tv~lpKe~   80 (407)
                      +|+  +|.++|+|||..
T Consensus       109 ~~~--nGVL~I~lPK~~  123 (142)
T PRK11597        109 TFV--NGLLHIDLIRNE  123 (142)
T ss_pred             EEc--CCEEEEEEeccC
Confidence            886  999999999974

>PRK10743 heat shock protein IbpA; Provisional

Probab=96.76  E-value=0.0083  Score=53.78  Aligned_cols=72  Identities=13%  Similarity=0.174  Sum_probs=61.1

Q ss_pred             ceeEeee-cCCeEEEEEecccccCCcceEEEeCcEEEEee------------------cCceeeecCCCCcccCCCCcce
Q psy5045           4 PMFELLQ-SEEDVTIIIKAPYANIADTEVYVEDTDFRFSS------------------SPYYLRLNFPGPIKETDHTSGK   64 (407)
Q Consensus         4 P~F~itQ-d~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~------------------~PYyLRL~fp~~lved~~~~a~   64 (407)
                      |.+.|.. +++.+.|.+-+|-++-.+++|.|+++..+-..                  ..|.=+++||..|-.+   +|+
T Consensus        35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~---~A~  111 (137)
T PRK10743         35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR---GAN  111 (137)
T ss_pred             CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC---cCE
Confidence            8889985 89999999999999999999999998775443                  3566789999999765   388


Q ss_pred             eeCCCcEEEEEEeccC
Q psy5045          65 YDSDKGQFTFTVIKVN   80 (407)
Q Consensus        65 Yd~d~g~~tv~lpKe~   80 (407)
                      |+  +|.++|+|||..
T Consensus       112 ~~--dGVL~I~lPK~~  125 (137)
T PRK10743        112 LV--NGLLYIDLERVI  125 (137)
T ss_pred             Ee--CCEEEEEEeCCC
Confidence            86  999999999964

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=96.19  E-value=0.016  Score=47.31  Aligned_cols=70  Identities=10%  Similarity=0.155  Sum_probs=55.7

Q ss_pred             EeeecCCeEEEEEecccccCCcceEEEeCcEEEEee-------------cCceeeecCCCCcccCCCCcceeeCCCcEEE
Q psy5045           7 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-------------SPYYLRLNFPGPIKETDHTSGKYDSDKGQFT   73 (407)
Q Consensus         7 ~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-------------~PYyLRL~fp~~lved~~~~a~Yd~d~g~~t   73 (407)
                      +|+-+++.+.|.+.+|-++..+++|.++|+...-+.             .-|.-+++||..+ +.+.-+|+|. .+|.++
T Consensus         1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~v-d~~~i~A~~~-~dGvL~   78 (83)
T cd06478           1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGV-DPAAITSSLS-ADGVLT   78 (83)
T ss_pred             CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCc-ChHHeEEEEC-CCCEEE
Confidence            467889999999999999999999999988765443             3366779999885 4444567763 489999


Q ss_pred             EEEec
Q psy5045          74 FTVIK   78 (407)
Q Consensus        74 v~lpK   78 (407)
                      |++||
T Consensus        79 I~~PK   83 (83)
T cd06478          79 ISGPR   83 (83)
T ss_pred             EEecC
Confidence            99998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=95.99  E-value=0.019  Score=46.40  Aligned_cols=67  Identities=18%  Similarity=0.305  Sum_probs=54.2

Q ss_pred             ecCCeEEEEEecccccCCcceEEEeCcEEEEe-------------ecCceeeecCCCCcccCCCCcceeeCCCcEEEEEE
Q psy5045          10 QSEEDVTIIIKAPYANIADTEVYVEDTDFRFS-------------SSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTV   76 (407)
Q Consensus        10 Qd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~-------------~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~l   76 (407)
                      .+.+.+.|.+.+|-++..++++.++++...-+             ..-|.-+++||..+ +.+..+|+|+. +|.++|++
T Consensus         4 ~~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~v-d~~~i~A~~~~-~GvL~I~~   81 (83)
T cd06526           4 DDDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGV-DPDSVTSSLSS-DGVLTIEA   81 (83)
T ss_pred             ccCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCC-ChHHeEEEeCC-CcEEEEEe
Confidence            34468999999999999999999998865543             45788899999984 55556788875 59999999


Q ss_pred             ec
Q psy5045          77 IK   78 (407)
Q Consensus        77 pK   78 (407)
                      ||
T Consensus        82 Pk   83 (83)
T cd06526          82 PK   83 (83)
T ss_pred             cC
Confidence            98

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=95.86  E-value=0.043  Score=45.18  Aligned_cols=79  Identities=16%  Similarity=0.341  Sum_probs=56.3

Q ss_pred             EeeecCCeEEEEEecccccCCcceEEEeCcE------EEEeecCceeeecCCCCcccCCCCcceeeCCCcEEEEEEeccC
Q psy5045           7 ELLQSEEDVTIIIKAPYANIADTEVYVEDTD------FRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVN   80 (407)
Q Consensus         7 ~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~------F~F~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~   80 (407)
                      +--|+++.|+|+|.++.....+..+.++...      |.|.-+-|.+.+.|-|.|.  +..+..+-+-.+.+-|+|.|+.
T Consensus         2 DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~--~~~~~~~~~~~~KVEI~L~K~e   79 (87)
T cd06490           2 DWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQ--WPCEVRISTETGKIELVLKKKE   79 (87)
T ss_pred             CceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCC--CCcEEEEcccCceEEEEEEcCC
Confidence            3469999999999998766666665554433      4444566888999999993  3223344444889999999999


Q ss_pred             CCCCCCCC
Q psy5045          81 TGEHFPDL   88 (407)
Q Consensus        81 ~Ge~F~dL   88 (407)
                      ++ .++.|
T Consensus        80 ~~-~W~~L   86 (87)
T cd06490          80 PE-KWTSL   86 (87)
T ss_pred             CC-ccccC
Confidence            75 56554

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=95.77  E-value=0.037  Score=45.54  Aligned_cols=70  Identities=19%  Similarity=0.248  Sum_probs=55.8

Q ss_pred             EeeecCCeEEEEEecccccCCcceEEEeCcEEEEee-------------cCceeeecCCCCcccCCCCcceeeCCCcEEE
Q psy5045           7 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-------------SPYYLRLNFPGPIKETDHTSGKYDSDKGQFT   73 (407)
Q Consensus         7 ~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-------------~PYyLRL~fp~~lved~~~~a~Yd~d~g~~t   73 (407)
                      .|.-+++.+.|.+.+|-++..+++|.+.++...-+.             +-|.=+++||..+- .+.-+|+|. ++|.++
T Consensus         4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd-~~~i~A~~~-~dGvL~   81 (86)
T cd06497           4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVD-QSAITCSLS-ADGMLT   81 (86)
T ss_pred             eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCC-hHHeEEEeC-CCCEEE
Confidence            467789999999999999999999999988776544             33666799998854 444566663 489999


Q ss_pred             EEEec
Q psy5045          74 FTVIK   78 (407)
Q Consensus        74 v~lpK   78 (407)
                      |++||
T Consensus        82 I~~PK   86 (86)
T cd06497          82 FSGPK   86 (86)
T ss_pred             EEecC
Confidence            99998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=95.38  E-value=0.062  Score=44.10  Aligned_cols=70  Identities=7%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             eeecCCeEEEEEecccccCCcceEEEeCcEEEEee-------------cCceeeecCCCCcccCCCCcceeeCCCcEEEE
Q psy5045           8 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-------------SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTF   74 (407)
Q Consensus         8 itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-------------~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv   74 (407)
                      ++-+++...|.+-+|-++..+++|.|+|+...-+.             .-|.=+++||.. ++.+.-+|+|+ ++|.++|
T Consensus         2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~-vd~~~i~A~~~-~dGvL~I   79 (84)
T cd06498           2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPAD-VDPLTITSSLS-PDGVLTV   79 (84)
T ss_pred             eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCC-CChHHcEEEeC-CCCEEEE
Confidence            45567888999999999999999999888665444             447777999988 45556777874 3899999


Q ss_pred             EEecc
Q psy5045          75 TVIKV   79 (407)
Q Consensus        75 ~lpKe   79 (407)
                      ++||.
T Consensus        80 ~lPk~   84 (84)
T cd06498          80 CGPRK   84 (84)
T ss_pred             EEeCC
Confidence            99994

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.77  E-value=0.11  Score=53.09  Aligned_cols=84  Identities=17%  Similarity=0.184  Sum_probs=72.6

Q ss_pred             ceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee-----cCceeeecCCCCcccCCCCcceeeCCCcEEEEEEec
Q psy5045           4 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-----SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIK   78 (407)
Q Consensus         4 P~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-----~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpK   78 (407)
                      +|+.--|++++|+|.|.+..+...++.+.+.++.+.+..     ++|-|-++|-|.|+-+.   ++|.+....|-|+|.|
T Consensus       157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~---s~~~v~~~Kiei~l~K  233 (356)
T PLN03088        157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDK---CKYEVLSTKIEIRLAK  233 (356)
T ss_pred             cccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccc---cEEEEecceEEEEEec
Confidence            578899999999999999999999999999999887765     47988899999997644   6799998999999999


Q ss_pred             cCCCCCCCCCcch
Q psy5045          79 VNTGEHFPDLDLI   91 (407)
Q Consensus        79 e~~Ge~F~dLDm~   91 (407)
                      ..+ ..++.|..-
T Consensus       234 ~~~-~~W~~L~~~  245 (356)
T PLN03088        234 AEP-ITWASLEYG  245 (356)
T ss_pred             CCC-CCccccccC
Confidence            987 489988643

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=94.23  E-value=0.35  Score=41.35  Aligned_cols=82  Identities=13%  Similarity=0.233  Sum_probs=67.0

Q ss_pred             CCceeEeeecCCeEEEEEecccc--cCCcceEEEeCcEEEEeec------CceeeecCCCCcccCCCCcceeeCCCcE-E
Q psy5045           2 LTPMFELLQSEEDVTIIIKAPYA--NIADTEVYVEDTDFRFSSS------PYYLRLNFPGPIKETDHTSGKYDSDKGQ-F   72 (407)
Q Consensus         2 iTP~F~itQd~~fv~I~I~~p~~--~~~~~ei~vd~~~F~F~~~------PYyLRL~fp~~lved~~~~a~Yd~d~g~-~   72 (407)
                      .|+.|.-+|+.+-|.|.|.+|.-  |++++.+.+..+-.++.++      | +|-=.|.++|.-|+   +.+-.++|. +
T Consensus         3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~-~i~G~L~~~V~~de---s~Wtled~~~l   78 (102)
T cd06495           3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKV-LMEGEFTHKINTEN---SLWSLEPGKCV   78 (102)
T ss_pred             cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCce-EEeCcccCcccCcc---ceEEEeCCCEE
Confidence            47899999999999999999973  6999999999999999995      5 57667899998887   557776654 8


Q ss_pred             EEEEeccCCCCCCCCC
Q psy5045          73 TFTVIKVNTGEHFPDL   88 (407)
Q Consensus        73 tv~lpKe~~Ge~F~dL   88 (407)
                      +|+|-|.+. +.++-|
T Consensus        79 ~I~L~K~~~-~wW~~v   93 (102)
T cd06495          79 LLSLSKCSE-VWWNAV   93 (102)
T ss_pred             EEEEEECCC-cccchh
Confidence            999999853 344443

Little is known about the function of the proteins in this subgroup.

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=92.76  E-value=0.41  Score=39.25  Aligned_cols=68  Identities=7%  Similarity=0.079  Sum_probs=49.7

Q ss_pred             eecCCeEEEEEecccccCCcceEEEeCcEEEE-------------eecCceeeecCCCCcccCCCCcceeeCCCcEEEEE
Q psy5045           9 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRF-------------SSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFT   75 (407)
Q Consensus         9 tQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F-------------~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~   75 (407)
                      .-+++...|.+-+|..+..++++.++|+..+-             +...|.-++.||..+-. +.-+|+|. ++|.++|+
T Consensus         3 ~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~-~~v~A~~~-~dGvL~I~   80 (83)
T cd06476           3 ESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDP-LLVRASLS-HDGILCIQ   80 (83)
T ss_pred             eccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCCh-hhEEEEec-CCCEEEEE
Confidence            34677778888888888888888888775543             44456667889988544 44566663 48999999


Q ss_pred             Eec
Q psy5045          76 VIK   78 (407)
Q Consensus        76 lpK   78 (407)
                      +||
T Consensus        81 ~Pr   83 (83)
T cd06476          81 APR   83 (83)
T ss_pred             ecC
Confidence            997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=91.23  E-value=0.64  Score=38.03  Aligned_cols=69  Identities=9%  Similarity=0.187  Sum_probs=54.2

Q ss_pred             eeecCCeEEEEEecccccCCcceEEEeCcEEEEeec----------CceeeecCCCCcccCCCCcceeeCCCcEEEEEEe
Q psy5045           8 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS----------PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVI   77 (407)
Q Consensus         8 itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~----------PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lp   77 (407)
                      |.-+++.+.|.+-+|.++..++++.|+|+...-+..          .|.=++.||..|-. +.-+|+| .++|.++|+++
T Consensus         3 v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~-e~v~A~l-~~~GvL~I~~~   80 (81)
T cd06479           3 VKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDP-TSVSSSL-GEDGTLTIKAR   80 (81)
T ss_pred             ccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCH-HHeEEEe-cCCCEEEEEec
Confidence            456788999999999999999999999998877763          56667889988544 4455664 25899999987


Q ss_pred             c
Q psy5045          78 K   78 (407)
Q Consensus        78 K   78 (407)
                      +
T Consensus        81 ~   81 (81)
T cd06479          81 R   81 (81)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>KOG3158|consensus

Probab=89.29  E-value=1.1  Score=42.17  Aligned_cols=83  Identities=22%  Similarity=0.263  Sum_probs=68.5

Q ss_pred             CCCceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeecC------ceeeecCCCCcccCCCCcceeeCCCcEEEE
Q psy5045           1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSP------YYLRLNFPGPIKETDHTSGKYDSDKGQFTF   74 (407)
Q Consensus         1 MiTP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~P------YyLRL~fp~~lved~~~~a~Yd~d~g~~tv   74 (407)
                      |+-|...--|-.+.|+++|-++-++.  .++.++++-|.|.|+-      |++.|.|=+.|--   ++.++......+++
T Consensus         5 ~~~p~v~Waqr~~~vyltv~Ved~~d--~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdp---e~sk~k~~~r~if~   79 (180)
T KOG3158|consen    5 MQPPEVKWAQRRDLVYLTVCVEDAKD--VHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDP---EKSKHKRTSRSIFC   79 (180)
T ss_pred             ccCCcchhhhhcCeEEEEEEeccCcc--ceeeccccEEEEEeccCCCceeeEEeeehhhhcCH---hhccccccceEEEE
Confidence            67788888999999999999987765  7889999999999987      8888999888754   34566666777788


Q ss_pred             EEeccCCCCCCCCC
Q psy5045          75 TVIKVNTGEHFPDL   88 (407)
Q Consensus        75 ~lpKe~~Ge~F~dL   88 (407)
                      .+-|...|+.+|-|
T Consensus        80 i~~K~e~~~~WprL   93 (180)
T KOG3158|consen   80 ILRKKELGEYWPRL   93 (180)
T ss_pred             EEEccccccccchh
Confidence            88888888998864

>KOG1309|consensus

Probab=89.14  E-value=1  Score=42.65  Aligned_cols=82  Identities=18%  Similarity=0.201  Sum_probs=68.3

Q ss_pred             ceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeecC-----ceeeecCCCCcccCCCCcceeeCCCcEEEEEEec
Q psy5045           4 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSP-----YYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIK   78 (407)
Q Consensus         4 P~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~P-----YyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpK   78 (407)
                      ++..--|.+..|+|+|.++.+.-.++.|.+..+...-...=     |.|-|.|-|.|+-+.   .+|.+=.-.+-|+|+|
T Consensus         4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~---~s~k~~stKVEI~L~K   80 (196)
T KOG1309|consen    4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEK---SSFKVFSTKVEITLAK   80 (196)
T ss_pred             ccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccc---eeeEeeeeeEEEEecc
Confidence            46677899999999999999999999999997766555443     999999999999876   5688888899999999


Q ss_pred             cCCCCCCCCCc
Q psy5045          79 VNTGEHFPDLD   89 (407)
Q Consensus        79 e~~Ge~F~dLD   89 (407)
                       ..+.-++.|.
T Consensus        81 -~~~irW~~Le   90 (196)
T KOG1309|consen   81 -AEIIRWESLE   90 (196)
T ss_pred             -ccchhhhhhh
Confidence             5666776665

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=88.55  E-value=2.1  Score=35.21  Aligned_cols=69  Identities=12%  Similarity=0.156  Sum_probs=51.9

Q ss_pred             EeeecCCeEEEEEecccccCCcceEEEeCcEEEEee-------------cCceeeecCCCCcccCCCCcceeeCCCcEEE
Q psy5045           7 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-------------SPYYLRLNFPGPIKETDHTSGKYDSDKGQFT   73 (407)
Q Consensus         7 ~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-------------~PYyLRL~fp~~lved~~~~a~Yd~d~g~~t   73 (407)
                      +|-.+++.+.|.+-+|-++..+++|.|+++..+-+.             .-|.-+++||..+-.+ +-+|+|. ++|.++
T Consensus         4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~-~v~A~~~-~dGvL~   81 (86)
T cd06475           4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPT-AVTSSLS-PDGILT   81 (86)
T ss_pred             eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHH-HcEEEEC-CCCeEE
Confidence            467788999999999999999999999887665443             4466677888776543 3455553 378888


Q ss_pred             EEEe
Q psy5045          74 FTVI   77 (407)
Q Consensus        74 v~lp   77 (407)
                      |++|
T Consensus        82 I~lP   85 (86)
T cd06475          82 VEAP   85 (86)
T ss_pred             EEec
Confidence            8887

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=88.04  E-value=1.3  Score=36.43  Aligned_cols=65  Identities=9%  Similarity=0.212  Sum_probs=47.7

Q ss_pred             CCeEEEEEecccccCCcceEEEeCcEEE-----------------EeecCceeeecCCCCcccCCCCcceeeCCCcEEEE
Q psy5045          12 EEDVTIIIKAPYANIADTEVYVEDTDFR-----------------FSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTF   74 (407)
Q Consensus        12 ~~fv~I~I~~p~~~~~~~ei~vd~~~F~-----------------F~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv   74 (407)
                      .+.+.|.+.+|-++..+++|.|+++...                 ++...|.=+++||..|-. +.-+|+|. .+|.++|
T Consensus         6 ~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~-~~i~A~~~-~dGvL~I   83 (87)
T cd06481           6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDP-EAVTCSLS-PSGHLHI   83 (87)
T ss_pred             cceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcCh-HHeEEEeC-CCceEEE
Confidence            3677888889999888888888876543                 344556777999998544 44556662 5899999


Q ss_pred             EEec
Q psy5045          75 TVIK   78 (407)
Q Consensus        75 ~lpK   78 (407)
                      ++|.
T Consensus        84 ~~P~   87 (87)
T cd06481          84 RAPR   87 (87)
T ss_pred             EcCC
Confidence            9983

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	407
2k8q_A	134	Nmr Structure Of Shq1p N-Terminal Domain Length = 1		1e-09
3eud_A	115	Structure Of The Cs Domain Of The Essential HACA RN		3e-08
3zuz_A	365	Structure Of Shq1p C-Terminal Domain Length = 365		5e-05
3uah_A	366	Structure Of The Shq1 Specific Domain From Saccharo		6e-05
3zv0_A	369	Structure Of The Shq1p-Cbf5p Complex Length = 369		6e-05

>pdb|2K8Q|A Chain A, Nmr Structure Of Shq1p N-Terminal Domain Length = 134

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 2  LTPMFELLQSEEDVTIIIKAPYANI----ADTEVYVEDTDFRFSSSPYYLRLNFPGPIKE 57
          +TP F + Q EE   I +K   +NI       E+ +++    F  SPYYLRL FP  + +
Sbjct: 2  ITPRFSITQDEE--FIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELID 59
Query: 58 TDHTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLL 95
           + ++ +YDS        V K+N  E+F DLDL +KLL
Sbjct: 60 DERSTAQYDSKDECINVKVAKLNKNEYFEDLDLPTKLL 97

>pdb|3EUD|A Chain A, Structure Of The Cs Domain Of The Essential HACA RNP Assembly Protein Shq1p Length = 115

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 2   LTPMFELLQSEEDVTIIIKAPYANIADTEV----YVEDTDFRFSSSPYYLRLNFPGPIKE 57
           +TP F + Q EE   I +K   +NI  + V     +++    F  SPYYLRL FP  + +
Sbjct: 16  ITPRFSITQDEE--FIFLKIFISNIRFSAVGLEIIIQENXIIFHLSPYYLRLRFPHELID 73
Query: 58  TDHTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLL 95
            + ++ +YDS        V K+N  E+F DLDL +KLL
Sbjct: 74  DERSTAQYDSKDECINVKVAKLNKNEYFEDLDLPTKLL 111

>pdb|3ZUZ|A Chain A, Structure Of Shq1p C-Terminal Domain Length = 365

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 27/109 (24%)
Query: 254 LGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFT 313
           L  + YL+  E+   + ++++++L++Y ++     G HT ES WT+ KL   + +L    
Sbjct: 143 LPKKSYLV--EDIKPLYVTILSVLFSYVFEQIENEGTHTTESAWTMGKLCPQISFLDQ-- 198
Query: 314 SLKQV-----------------------LISSMRRSLCYPLYREWRLSC 339
            LKQV                       +I+ +RR+L YPL+R + L+ 
Sbjct: 199 QLKQVNELQDGMKEISKVNKDSSLIKIAIITGIRRALSYPLHRNYDLAM 247

>pdb|3UAH|A Chain A, Structure Of The Shq1 Specific Domain From Saccharomyces Cerevisiae Length = 366

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 27/109 (24%)
Query: 254 LGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFT 313
           L  + YL+  E+   + ++++++L++Y ++     G HT ES WT+ KL   + +L    
Sbjct: 144 LPKKSYLV--EDIKPLYVTILSVLFSYVFEQIENEGTHTTESAWTMGKLCPQISFLDQ-- 199
Query: 314 SLKQV-----------------------LISSMRRSLCYPLYREWRLSC 339
            LKQV                       +I+ +RR+L YPL+R + L+ 
Sbjct: 200 QLKQVNELQDGMKEISKVNKDSSLIKIAIITGIRRALSYPLHRNYDLAM 248

>pdb|3ZV0|A Chain A, Structure Of The Shq1p-Cbf5p Complex Length = 369

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 27/109 (24%)
Query: 254 LGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFT 313
           L  + YL+  E+   + ++++++L++Y ++     G HT ES WT+ KL   + +L    
Sbjct: 141 LPKKSYLV--EDIKPLYVTILSVLFSYVFEQIENEGTHTTESAWTMGKLCPQISFLDQ-- 196
Query: 314 SLKQV-----------------------LISSMRRSLCYPLYREWRLSC 339
            LKQV                       +I+ +RR+L YPL+R + L+ 
Sbjct: 197 QLKQVNELQDGMKEISKVNKDSSLIKIAIITGIRRALSYPLHRNYDLAM 245
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	407
3zuz_A	365	Protein SHQ1; cell cycle, RNP assembly, X-linked d	4e-40
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	4e-39
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	1e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	8e-04

>3zuz_A Protein SHQ1; cell cycle, RNP assembly, X-linked dyskeratosis congenita; HET: CME; 1.50A {Saccharomyces cerevisiae} PDB: 3zv0_A 3uah_A 3uai_D Length = 365

 Score =  145 bits (367), Expect = 4e-40
 Identities = 48/261 (18%), Positives = 95/261 (36%), Gaps = 37/261 (14%)

Query: 122 EDEDDDTMWFIEQEPQHQPEENSTTYGYGFANKTKGTLTNMKVTISK-SDLGFDLEELET 180
             E  +  W IEQ+             YGF N     ++      +  ++L  D E  + 
Sbjct: 3   MGEGFN--WEIEQKMDSSTNNGILKTKYGFDNLYDTVISVSTSNGNDINELD-DPEHTDA 59

Query: 181 AARIVEEEEVERA-------LCNHVSTLVLCSNSEQSE--RSIIFFIGLDFWVVSRDYAS 231
             R++E    E         +  +++         +    + ++ F         + Y  
Sbjct: 60  NDRVIERLRKENLKFDPEYYVSEYMTHKYGNEEDLEINGIKELLKFTPSIVKQYLQWYKD 119

Query: 232 DVRQAQDDRTQMTPSELDTMK-QLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGE 290
                     + T  E   M+  L  + YL+   +   + ++++++L++Y ++     G 
Sbjct: 120 STNPNLVMPIEFTDEEQKQMQDNLPKKSYLVEDIKP--LYVTILSVLFSYVFEQIENEGT 177

Query: 291 HTVESGWTVNKLSSALCWLQS---------------------FTSLKQVLISSMRRSLCY 329
           HT ES WT+ KL   + +L                        + +K  +I+ +RR+L Y
Sbjct: 178 HTTESAWTMGKLCPQISFLDQQLKQVNELQDGMKEISKVNKDSSLIKIAIITGIRRALSY 237

Query: 330 PLYREWRLSCAIQQDVNTILS 350
           PL+R + L+      V  IL 
Sbjct: 238 PLHRNYDLAMKAWTFVYYILR 258

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Length = 115

 Score =  135 bits (341), Expect = 4e-39
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANI--ADTEVYVEDTDFRFSSSPYYLRLNFPGPIKET 58
           M+TP F + Q EE + + I            E+ +++    F  SPYYLRL FP  + + 
Sbjct: 15  MITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELIDD 74

Query: 59  DHTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIP 97
           + ++ +YDS        V K+N  E+F DLDL +KLL  
Sbjct: 75  ERSTAQYDSKDECINVKVAKLNKNEYFEDLDLPTKLLAR 113

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Length = 134

 Score =  134 bits (339), Expect = 1e-38
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 2   LTPMFELLQSEEDVTIIIKAPYANI--ADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETD 59
           +TP F + Q EE + + I            E+ +++    F  SPYYLRL FP  + + +
Sbjct: 2   ITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELIDDE 61

Query: 60  HTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVSD 119
            ++ +YDS        V K+N  E+F DLDL +KLL        A    E          
Sbjct: 62  RSTAQYDSKDECINVKVAKLNKNEYFEDLDLPTKLLARQGDLAGADALTENTDAKKTQKP 121

Query: 120 --EDEDEDDDT 128
             ++ + D  +
Sbjct: 122 LIQEVETDGVS 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 70/463 (15%), Positives = 131/463 (28%), Gaps = 124/463 (26%)

Query: 30  EVYVEDTDFRFSSSPYYLRLNFPGPI---KETDHTSGKYDSDKG-QFTFTVIKV---NTG 82
           + +V++ D +          + P  I   +E DH     D+  G    F  +        
Sbjct: 27  DAFVDNFDCKDV-------QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 83  EHFPD--LDLISKLLIPPVKHRVAKPGIEVMSEPNNVSDEDEDEDDDTMWFIEQEPQH-- 138
           + F +  L +  K L+ P+K    +P +              D      + + +   +  
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 139 --------QPEENSTTYGYGFANKT---KGTLTNMKVTISKSDLGF------------DL 175
                   +P +N    G   + KT        + KV        F             L
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 176 EELETAARIVEEEEVERALCNHVSTLVLCSNSEQSERSIIFF-----IGL----DFW--- 223
           E L+     ++     R   +H S + L  +S Q+E   +         L    +     
Sbjct: 200 EMLQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 224 ------------VVSRDYA-SDVRQAQ--------DDRTQMTPSELDTM--KQLGNREYL 260
                       + +R    +D   A              +TP E+ ++  K L  R   
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 261 LSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQVLI 320
           L   E        ++I+     D   T         W  N       W          +I
Sbjct: 318 LP-REVLTTNPRRLSIIAESIRDGLAT---------WD-N-------WKHVNCDKLTTII 359

Query: 321 SSMRRSLCYPLYREWRLSCAI-QQDVN------TILSQDILGYKVM-------------- 359
            S    L    YR+     ++     +      +++  D++   VM              
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 360 --KQVTISKSDLGFDL-----DELETAARIVEEEEVERALCNH 395
             K+ TIS   +  +L     +E      IV+   + +   + 
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 42/395 (10%), Positives = 114/395 (28%), Gaps = 117/395 (29%)

Query: 60  HTSGKYDSDKGQFTFT---VIKVNTGEHFPDLDL--ISKLLIPPVKHRVAKPGIEVMSEP 114
           H     D + G+  +    ++ V       + D   +  +    +          ++   
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIMSK 58

Query: 115 NNVSDEDEDEDDDTMWFIEQEPQHQPE---ENSTTYGYGF-----ANKTKGTLTNMKVTI 166
           + VS           W +  + +   +   E      Y F       + +      ++ I
Sbjct: 59  DAVSGTLR-----LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 167 SKSDLGF-DLEELE--TAARIVEEEEVERALCN-----HV----------STLVL--CSN 206
            + D  + D +       +R+    ++ +AL       +V          + + L  C +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 207 SEQSERSIIFFIGLDFWVVSRDYASD----------------VRQAQDDRTQMTPSELDT 250
            +   +       + FW+  ++  S                    ++ D +      + +
Sbjct: 174 YKVQCK---MDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 251 MKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQ 310
           ++    R  LL S+     LL L+N                 V++    N  + + C   
Sbjct: 230 IQAELRR--LLKSKPYENCLLVLLN-----------------VQNAKAWNAFNLS-C--- 266

Query: 311 SFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILSQDILGYKVMKQVTISKSDLG 370
                 ++L+++                    +        D L       +++    + 
Sbjct: 267 ------KILLTT--------------------RFKQVT---DFLSAATTTHISLDHHSMT 297

Query: 371 FDLDELETA-ARIVE--EEEVERALCNHVSTLVLC 402
              DE+++   + ++   +++ R +    +   L 
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLT-TNPRRLS 331

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Length = 125

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 23/133 (17%)

Query: 1   MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFS------SSPYYLRLNFPGP 54
           M     +     + V I       +  D  V  E +   FS      +  +   ++    
Sbjct: 1   MQPASAKWYDRRDYVFIEFCVE--DSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHC 58

Query: 55  IKETDHTSGKYDSDKGQFTFTVIKVNTGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEP 114
           I   D    K+          + K  +G+ +P      +L     K            + 
Sbjct: 59  I---DPNDSKHKRTDRSILCCLRKGESGQSWP------RLTKERAKLNWLSV------DF 103

Query: 115 NNVSDEDEDEDDD 127
           NN  D ++D D+D
Sbjct: 104 NNWKDWEDDSDED 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	407
3zuz_A	365	Protein SHQ1; cell cycle, RNP assembly, X-linked d	100.0
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	100.0
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	100.0
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	98.72
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	98.62
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	98.24
4fei_A	102	Heat shock protein-related protein; stress respons	98.21
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	98.17
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	98.09
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	97.99
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	97.96
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	97.91
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	97.85
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	97.85
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	97.76
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	97.71
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	97.68
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	97.51
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	97.49
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	97.48
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	97.05
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	96.95
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	96.94
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	96.89
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	95.78
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	95.46
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	88.59

>3zuz_A Protein SHQ1; cell cycle, RNP assembly, X-linked dyskeratosis congenita; HET: CME; 1.50A {Saccharomyces cerevisiae} PDB: 3zv0_A 3uah_A 3uai_D

Probab=100.00  E-value=3.4e-76  Score=587.87  Aligned_cols=238  Identities=21%  Similarity=0.358  Sum_probs=197.3

Q ss_pred             ccCCcCCceecccCCCCCCCCCCCCcccCCCCcccccccchhhhccCCCCCCcccccCccch--HHHHHHHHh------C
Q psy5045         123 DEDDDTMWFIEQEPQHQPEENSTTYGYGFANKTKGTLTNMKVTISKSDLGFDLEELETAARI--VEEEEVERA------L  194 (407)
Q Consensus       123 ~~~e~~dw~ieQ~~~~~~~~~~~~~~YGF~n~~sg~f~~l~~e~i~~~~g~dI~dl~dPe~t--~eR~~~Rl~------D  194 (407)
                      +++|+|||+|+|++.++....+.+++|||+|+|||+|++++    .+  ||||+||+|||+|  .+|+++|++      |
T Consensus         2 ~~~e~fdWeieQ~~~~~~~~~~~~~~YGF~n~ysgv~~~~~----~~--~ndI~eL~dPe~t~~~eR~~~Rl~~E~~kFD   75 (365)
T 3zuz_A            2 QMGEGFNWEIEQKMDSSTNNGILKTKYGFDNLYDTVISVST----SN--GNDINELDDPEHTDANDRVIERLRKENLKFD   75 (365)
T ss_dssp             --------------------CCSCCCBSGGGCBCSHHHHHH----TT--TCCSCCCSCGGGCCHHHHHHHHHHHHHHHCC
T ss_pred             CcccccCCcccccCCCCcccccccCCCCCCcccccHHHHHH----hh--cccccccCCcccCCHHHHHHHHHHHHHhCCC
Confidence            35688999999994443334466889999999999999985    34  7789999999999  999999999      9


Q ss_pred             cchhhhcccccC-----c---hhhhhhhhcccccc----ccccccccchhhhcccCCCCCCCHHHHHHHh-hcCCccccC
Q psy5045         195 CNHVSTLVLCSN-----S---EQSERSIIFFIGLD----FWVVSRDYASDVRQAQDDRTQMTPSELDTMK-QLGNREYLL  261 (407)
Q Consensus       195 ~d~YlaD~~~~e-----d---e~i~~lL~~~p~~~----~w~~~~~~~~~~~~~~~~~~~fT~eE~~~L~-~Lp~keyl~  261 (407)
                      |||||||||..+     +   ++|++||+|+|||.    +|+|++.     .+...|+++||++||++|+ +||||+||+
T Consensus        76 ~e~YlaD~~e~~~~~~ed~d~~~i~~lL~~~p~~~~~~~~w~k~~~-----~~~~~~~~eFT~eE~~~m~~~Lp~keyLi  150 (365)
T 3zuz_A           76 PEYYVSEYMTHKYGNEEDLEINGIKELLKFTPSIVKQYLQWYKDST-----NPNLVMPIEFTDEEQKQMQDNLPKKSYLV  150 (365)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHCHHHHHTCCCHHHHHHHHHHTTCS-----STTSCCCCCCCHHHHHHHHHHSCCCCCCC
T ss_pred             HHHHHHHHhhhcccccchhhhHHHHHHHhcCCchhhHHHHhhhhcc-----ccccCCCCCCCHHHHHHHHhhCCcccccC
Confidence            999999999432     1   57999999999987    5988543     2245789999999999999 999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhhheeeecCCCCCccccchhhhhccccccccC---------------------cCCHHHHHH
Q psy5045         262 SSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQS---------------------FTSLKQVLI  320 (407)
Q Consensus       262 ~~~~~~~l~l~LvdILfAY~Yd~R~teGe~tvES~WTI~KLSptLS~ld~---------------------~~~l~~vli  320 (407)
                      ++  .+.+|+||||||||||||+|||+||||||||||||||||||||||+                     |+++++||+
T Consensus       151 ~~--~~~~y~~LldILfAY~Yd~r~teGe~~~ES~WTI~KLSp~lS~ld~~~~~~~~~~~~~~~~~~~~~~~~~v~~vli  228 (365)
T 3zuz_A          151 ED--IKPLYVTILSVLFSYVFEQIENEGTHTTESAWTMGKLCPQISFLDQQLKQVNELQDGMKEISKVNKDSSLIKIAII  228 (365)
T ss_dssp             SC--CHHHHHHHHHHHHHHHHHHHHTTTCCCTTHHHHHHHHCHHHHTCCSCCCC-----------------CCHHHHHHH
T ss_pred             Cc--hHHHHHHHHHHHHHHHHhhhccCCCCCchhhchHhhhhhHHHHhhcccccccccccccccccccccchhhHHHHHH
Confidence            86  7999999999999999999999999999999999999999999998                     578999999


Q ss_pred             HhhhhhcccccchhHHHHHHHHHHHHHHhh-------------------------------hhhhH--------------
Q psy5045         321 SSMRRSLCYPLYREWRLSCAIQQDVNTILS-------------------------------QDILG--------------  355 (407)
Q Consensus       321 a~~RRsL~YPLyRnf~L~~kv~~Dv~~iL~-------------------------------~DYcv--------------  355 (407)
                      +|+||||||||||||+|+++||+||+++|+                               +|||+              
T Consensus       229 a~~RRsL~YPL~Rn~~L~~~~~~Dv~~iL~~Gkr~VLk~LLdi~~lf~~~d~~Yvln~lyi~Dyc~Wiqs~~~e~~L~~L  308 (365)
T 3zuz_A          229 TGIRRALSYPLHRNYDLAMKAWTFVYYILRGGKRLVIRALLDIHETFRFHDVYYVYDKVLLDDLTAWFISQGSENVIRSL  308 (365)
T ss_dssp             HHHHHHTTSSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCTTTTHHHHHTHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHcccchhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccCCHHHHHHH
Confidence            999999999999999999999999999998                               79999              


Q ss_pred             HHhhhhc--cccccccCCCh
Q psy5045         356 YKVMKQV--TISKSDLGFDL  373 (407)
Q Consensus       356 ~~~l~~~--~i~K~~lgl~L  373 (407)
                      |..|++.  .|+|+++||+.
T Consensus       309 a~~l~k~~~~itK~~i~fe~  328 (365)
T 3zuz_A          309 ALEMRKEQESLSKQDIEFEC  328 (365)
T ss_dssp             HHHHHHHHHHCCGGGCEEEE
T ss_pred             HHHHHHHHhhcchhhcccee
Confidence            6667775  79999988765

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-48  Score=339.38  Aligned_cols=115  Identities=31%  Similarity=0.483  Sum_probs=108.9

Q ss_pred             CCCceeEeeecCCeEEEEEeccccc--CCcceEEEeCcEEEEeecCceeeecCCCCcccCCCCcceeeCCCcEEEEEEec
Q psy5045           1 MLTPMFELLQSEEDVTIIIKAPYAN--IADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIK   78 (407)
Q Consensus         1 MiTP~F~itQd~~fv~I~I~~p~~~--~~~~ei~vd~~~F~F~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpK   78 (407)
                      ||||+|+|+||++||+|+|||||+|  ++++||+|+|++|.||++||||||+|||+|+|+++++|+||+++|+|+|+|||
T Consensus         1 MiTP~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~~~PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLpK   80 (134)
T 2k8q_A            1 GITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAK   80 (134)
T ss_dssp             CCCSEEEEEECSSEEEEEEECCSSCCCSSSCCCEECSSSEEECSSSSCEEECCSSCEECCSSCEEEEETTTTEEEEEEEE
T ss_pred             CcCceEEEEECCCEEEEEEEcCccccCccccEEEEeCCEEEEecCCeEEEecCCCeeecCCCcceeEeccCCEEEEEEeC
Confidence            9999999999999999999999999  99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhhcCCCCCC-------------CCCCCceEEcCCCC
Q psy5045          79 VNTGEHFPDLDLISKLLIPPVKH-------------RVAKPGIEVMSEPN  115 (407)
Q Consensus        79 e~~Ge~F~dLDm~tkLLap~~~~-------------~~~~plIe~i~~~~  115 (407)
                      ++|||||+||||+|+||||+++.             +++|||||||++++
T Consensus        81 ~~~Ge~F~dLD~~t~LLap~~~~~~~~~~~~~~~~~~~~~pLieei~~~~  130 (134)
T 2k8q_A           81 LNKNEYFEDLDLPTKLLARQGDLAGADALTENTDAKKTQKPLIQEVETDG  130 (134)
T ss_dssp             SSTTCCCSSTTCSHHHHCCCTTSCSCCCCCCCCCSCCCCCCCCCCCCCCC
T ss_pred             CCCCCCCCCccchhHHhCCCCccccccccccccccccccCCceeeeecCC
Confidence            99999999999999999995433             15699999998653

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-47  Score=323.53  Aligned_cols=98  Identities=35%  Similarity=0.561  Sum_probs=95.4

Q ss_pred             CCCceeEeeecCCeEEEEEeccccc--CCcceEEEeCcEEEEeecCceeeecCCCCcccCCCCcceeeCCCcEEEEEEec
Q psy5045           1 MLTPMFELLQSEEDVTIIIKAPYAN--IADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIK   78 (407)
Q Consensus         1 MiTP~F~itQd~~fv~I~I~~p~~~--~~~~ei~vd~~~F~F~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpK   78 (407)
                      ||||+|+||||++||+|+|+|||+|  ++++||+|+|++|+||++||||||+|||+|+||++++|+||+++|+|+|+|||
T Consensus        15 ~iTP~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~lpK   94 (115)
T 3eud_A           15 MITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAK   94 (115)
T ss_dssp             CBCCCEEEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEETTEEEEEECSSCEECSTTCEEEEETTTTEEEEEEEE
T ss_pred             EeCCcEEEEECCCEEEEEEEcCceecccCccEEEEeCCEEEEecCCeEEEEecCcceecCCCcceEEeCCCcEEEEEEcC
Confidence            9999999999999999999999999  88999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcchhhhcCCC
Q psy5045          79 VNTGEHFPDLDLISKLLIPP   98 (407)
Q Consensus        79 e~~Ge~F~dLDm~tkLLap~   98 (407)
                      ++|||||+||||+|+||||+
T Consensus        95 ~~~GE~F~dLDm~t~LLa~~  114 (115)
T 3eud_A           95 LNKNEYFEDLDLPTKLLARQ  114 (115)
T ss_dssp             SSTTCCCCCTTCHHHHBC--
T ss_pred             CcCCCcCCCccchHHHhccC
Confidence            99999999999999999994

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=98.72  E-value=3.1e-08  Score=83.20  Aligned_cols=83  Identities=16%  Similarity=0.258  Sum_probs=75.0

Q ss_pred             CceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeec-----CceeeecCCCCcccCCCCcceeeCCCcEEEEEEe
Q psy5045           3 TPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS-----PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVI   77 (407)
Q Consensus         3 TP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~-----PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lp   77 (407)
                      .|+|...|+++.|+|.|.+|-++..++.+.+.++.|.|.++     +|++.+.|++.|..++   ++|....|.+.|+|+
T Consensus         9 ~~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~---s~~~~~~~~l~i~L~   85 (114)
T 1rl1_A            9 KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ---STFKVLSTKIEIKLK   85 (114)
T ss_dssp             CCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGG---EEEEECSSSEEEEEE
T ss_pred             CCCccEEeCCCEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeCCCcEEEEEeeCCCcCCccc---cEEEEECCEEEEEEE
Confidence            46799999999999999999988899999999999999984     8999999999998854   567777799999999


Q ss_pred             ccCCCCCCCCCc
Q psy5045          78 KVNTGEHFPDLD   89 (407)
Q Consensus        78 Ke~~Ge~F~dLD   89 (407)
                      |..+| .++.|.
T Consensus        86 K~~~~-~W~~L~   96 (114)
T 1rl1_A           86 KPEAV-RWEKLE   96 (114)
T ss_dssp             CSSCC-CCSSSB
T ss_pred             cCCCC-cCcccc
Confidence            99998 898875

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=98.62  E-value=1.9e-07  Score=74.99  Aligned_cols=83  Identities=17%  Similarity=0.219  Sum_probs=74.8

Q ss_pred             CceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeec-----CceeeecCCCCcccCCCCcceeeCCCcEEEEEEe
Q psy5045           3 TPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS-----PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVI   77 (407)
Q Consensus         3 TP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~-----PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lp   77 (407)
                      .|++...|+++.|+|.|.+|-++..++.+.+.++.+.|.++     +|.+.+.|++.|..++   ++|....+.+.|+|+
T Consensus         2 ~~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~---s~~~~~~~~l~i~L~   78 (92)
T 2xcm_C            2 KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDK---CKYEVLSTKIEICLA   78 (92)
T ss_dssp             CSEEEEEEETTEEEEEEECCSCCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGG---CEEEECSSCEEEEEE
T ss_pred             CccccEEeCCCEEEEEEEECCCChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchh---EEEEEECCEEEEEEE
Confidence            58999999999999999999999999999999999999985     7999999999998865   456667789999999


Q ss_pred             ccCCCCCCCCCc
Q psy5045          78 KVNTGEHFPDLD   89 (407)
Q Consensus        78 Ke~~Ge~F~dLD   89 (407)
                      |..+| .++.|.
T Consensus        79 K~~~~-~W~~L~   89 (92)
T 2xcm_C           79 KADII-TWASLE   89 (92)
T ss_dssp             BSSSC-CCSCSB
T ss_pred             cCCCC-cchhcc
Confidence            99998 888773

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=98.24  E-value=5.5e-06  Score=70.88  Aligned_cols=84  Identities=15%  Similarity=0.190  Sum_probs=76.4

Q ss_pred             CCceeEeeecCCeEEEEEeccc---ccCCcceEEEeCcEEEEeec--CceeeecCCCCcccCCCCcceeeCCCc-EEEEE
Q psy5045           2 LTPMFELLQSEEDVTIIIKAPY---ANIADTEVYVEDTDFRFSSS--PYYLRLNFPGPIKETDHTSGKYDSDKG-QFTFT   75 (407)
Q Consensus         2 iTP~F~itQd~~fv~I~I~~p~---~~~~~~ei~vd~~~F~F~~~--PYyLRL~fp~~lved~~~~a~Yd~d~g-~~tv~   75 (407)
                      .+|.+.-+|+.+.|+|.|.+|-   +++.++.+.+..+-+.|.++  ||++...|.++|..++   ++|-..++ .+.|+
T Consensus        15 ~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~g~L~~~I~~de---S~w~i~~~~~i~i~   91 (121)
T 3qor_A           15 DLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEE---SSWLIADGAVVTVH   91 (121)
T ss_dssp             BCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETTSCCSEEEEBSSCBCGGG---CEEEEETTTEEEEE
T ss_pred             cCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcCcceEEeccccccccccc---cEEEEcCCCEEEEE
Confidence            4799999999999999999985   79999999999999999998  8999999999999876   46888777 99999


Q ss_pred             EeccCCCCCCCCC
Q psy5045          76 VIKVNTGEHFPDL   88 (407)
Q Consensus        76 lpKe~~Ge~F~dL   88 (407)
                      |-|.++|+.++.|
T Consensus        92 L~K~~~~~~W~~L  104 (121)
T 3qor_A           92 LEKINKMEWWSRL  104 (121)
T ss_dssp             EEBSSSSCCCSCS
T ss_pred             EEECCCCCCChhh
Confidence            9999999888776

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=98.21  E-value=7.5e-06  Score=67.64  Aligned_cols=78  Identities=14%  Similarity=0.283  Sum_probs=69.6

Q ss_pred             CCceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee---------------cCceeeecCCCCcccCCCCcceee
Q psy5045           2 LTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS---------------SPYYLRLNFPGPIKETDHTSGKYD   66 (407)
Q Consensus         2 iTP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~---------------~PYyLRL~fp~~lved~~~~a~Yd   66 (407)
                      ..|.+.|.++++.++|.+.+|-++..++++.++++......               ..|.-++.||..+ +-+..+|+|+
T Consensus         5 ~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~v-d~~~i~A~~~   83 (102)
T 4fei_A            5 WTPAADWRDAGTHLDLLLDVPGVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPV-RPASGVASLA   83 (102)
T ss_dssp             CCCCEEEEEETTEEEEEEECTTCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCB-CTTCCEEEEE
T ss_pred             ccCcEEEEEcCCEEEEEEECCCCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCc-chhHcEEEEE
Confidence            57999999999999999999999999999999999998854               3578889999987 6677889995


Q ss_pred             CCCcEEEEEEeccCCC
Q psy5045          67 SDKGQFTFTVIKVNTG   82 (407)
Q Consensus        67 ~d~g~~tv~lpKe~~G   82 (407)
                        +|.++|++||..+-
T Consensus        84 --~GvL~I~lpK~~~~   97 (102)
T 4fei_A           84 --GGVLTVRFEKLRPT   97 (102)
T ss_dssp             --TTEEEEEEEBSSCC
T ss_pred             --CCEEEEEEEccCcc
Confidence              89999999998764

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=98.17  E-value=1e-05  Score=69.79  Aligned_cols=85  Identities=15%  Similarity=0.192  Sum_probs=76.4

Q ss_pred             CCceeEeeecCCeEEEEEeccc---ccCCcceEEEeCcEEEEeec--CceeeecCCCCcccCCCCcceeeCCCc-EEEEE
Q psy5045           2 LTPMFELLQSEEDVTIIIKAPY---ANIADTEVYVEDTDFRFSSS--PYYLRLNFPGPIKETDHTSGKYDSDKG-QFTFT   75 (407)
Q Consensus         2 iTP~F~itQd~~fv~I~I~~p~---~~~~~~ei~vd~~~F~F~~~--PYyLRL~fp~~lved~~~~a~Yd~d~g-~~tv~   75 (407)
                      .+|.+.-+|+.+.|+|.|.+|-   +++.++.+.+..+-+.|.++  ||++-+.|.++|..++   ++|...++ .+.|+
T Consensus         6 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~~~L~~~I~~e~---s~w~i~~~k~v~i~   82 (131)
T 1wfi_A            6 SGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEE---SSWLIEDGKVVTVH   82 (131)
T ss_dssp             SCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTT---CEEEEETTTEEEEE
T ss_pred             CCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEECCceEEEeccccccccccc---CEEEEcCCCEEEEE
Confidence            4899999999999999999984   78999999999999999885  7899999999999876   56888777 79999


Q ss_pred             EeccCCCCCCCCCc
Q psy5045          76 VIKVNTGEHFPDLD   89 (407)
Q Consensus        76 lpKe~~Ge~F~dLD   89 (407)
                      |-|.++|+.++.|-
T Consensus        83 L~K~~~~~~W~~L~   96 (131)
T 1wfi_A           83 LEKINKMEWWNRLV   96 (131)
T ss_dssp             EEBSSSCCCCSCSB
T ss_pred             EEECCCCCCChhhh
Confidence            99999999998763

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=98.09  E-value=8.7e-06  Score=69.87  Aligned_cols=83  Identities=18%  Similarity=0.225  Sum_probs=73.7

Q ss_pred             CCc-eeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee------cCceeeecCCCCcccCCCCcceeeCCCcEEEE
Q psy5045           2 LTP-MFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS------SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTF   74 (407)
Q Consensus         2 iTP-~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~------~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv   74 (407)
                      ++| ++.-.|..+.|+|+|.+|-+  .++.+.+..+.+.|.+      ++|.+.|.|-+.|..++   ++|......+.|
T Consensus         1 ~~P~~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~---S~~~v~~~kiei   75 (125)
T 1ejf_A            1 MQPASAKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPND---SKHKRTDRSILC   75 (125)
T ss_dssp             CBCCCEEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEE---EEEEECSSCEEE
T ss_pred             CCCCceeEEeCCCEEEEEEEecCC--CceEEEEECCEEEEEEEeCCCCceEEEEEEccceecccc---CEEEECCCEEEE
Confidence            367 99999999999999999985  6888999999999986      46999999999998864   678887788999


Q ss_pred             EEeccCCCCCCCCCc
Q psy5045          75 TVIKVNTGEHFPDLD   89 (407)
Q Consensus        75 ~lpKe~~Ge~F~dLD   89 (407)
                      +|.|.++|+.++-|-
T Consensus        76 ~L~K~~~~~~W~rL~   90 (125)
T 1ejf_A           76 CLRKGESGQSWPRLT   90 (125)
T ss_dssp             EEEESSTTCCCSSSB
T ss_pred             EEEECCCCCCCCcee
Confidence            999999999999874

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=97.99  E-value=4.1e-05  Score=62.50  Aligned_cols=77  Identities=12%  Similarity=0.231  Sum_probs=66.7

Q ss_pred             CCceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeec--------------------CceeeecCCCCcccCCCC
Q psy5045           2 LTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS--------------------PYYLRLNFPGPIKETDHT   61 (407)
Q Consensus         2 iTP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~--------------------PYyLRL~fp~~lved~~~   61 (407)
                      ..|.+.|..+++.++|.+.+|-++..+++|.++++......+                    .|.-++.||..+ +-+..
T Consensus         3 ~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~v-d~~~i   81 (100)
T 3gla_A            3 WVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSA-DADGI   81 (100)
T ss_dssp             SCCCEEEEECSSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTB-CTTSC
T ss_pred             ccCcEEEEECCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCc-ChHHe
Confidence            479999999999999999999999999999999999888753                    466689999995 77778


Q ss_pred             cceeeCCCcEEEEEEeccCC
Q psy5045          62 SGKYDSDKGQFTFTVIKVNT   81 (407)
Q Consensus        62 ~a~Yd~d~g~~tv~lpKe~~   81 (407)
                      +|+|.  +|.++|++||...
T Consensus        82 ~A~~~--~GvL~I~~pK~~~   99 (100)
T 3gla_A           82 TAAGR--NGVLEIRIPKRPA   99 (100)
T ss_dssp             EEEEE--TTEEEEEEEBC--
T ss_pred             EEEEe--CCEEEEEEecCCC
Confidence            89996  7999999999753

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.96  E-value=6.5e-05  Score=64.47  Aligned_cols=92  Identities=15%  Similarity=0.137  Sum_probs=79.9

Q ss_pred             CceeEeeecCCeEEEEEecccc---cCCcceEEEeCcEEEEeec-----Cceeeec-CCCCcccCCCCcceeeCCCcEEE
Q psy5045           3 TPMFELLQSEEDVTIIIKAPYA---NIADTEVYVEDTDFRFSSS-----PYYLRLN-FPGPIKETDHTSGKYDSDKGQFT   73 (407)
Q Consensus         3 TP~F~itQd~~fv~I~I~~p~~---~~~~~ei~vd~~~F~F~~~-----PYyLRL~-fp~~lved~~~~a~Yd~d~g~~t   73 (407)
                      .|+|.-.|+.++|+|.|.+|-+   +..++.+.+..+.|.|.++     +|.+-+. |-+.|..++   ++|....+.+.
T Consensus        20 ~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~---S~~~v~~~kVe   96 (127)
T 1x5m_A           20 ISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEG---SSKKVKTDTVL   96 (127)
T ss_dssp             CCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTT---CEEEEETTEEE
T ss_pred             ccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCccc---CEEEEeCCEEE
Confidence            3688999999999999999987   7789999999999999986     7999995 999998865   46888889999


Q ss_pred             EEEeccCCCCCCCCCcchhhhcCC
Q psy5045          74 FTVIKVNTGEHFPDLDLISKLLIP   97 (407)
Q Consensus        74 v~lpKe~~Ge~F~dLDm~tkLLap   97 (407)
                      |+|-|.++|+.++.|-.-.+-+..
T Consensus        97 i~L~K~~~~~~W~~L~~~~~k~k~  120 (127)
T 1x5m_A           97 ILCRKKVENTRWDYLTQVEKECKE  120 (127)
T ss_dssp             EEEECSSSSCCCSSSBHHHHHHHS
T ss_pred             EEEEECCCCCCCCccccccccccc
Confidence            999999999999999766554433

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=97.91  E-value=4.3e-05  Score=65.04  Aligned_cols=77  Identities=16%  Similarity=0.252  Sum_probs=68.1

Q ss_pred             CceeEeeecCCeEEEEEecccccCCcceEEEeC-cEEEEeec----------------CceeeecCCCCcccCCCC-cce
Q psy5045           3 TPMFELLQSEEDVTIIIKAPYANIADTEVYVED-TDFRFSSS----------------PYYLRLNFPGPIKETDHT-SGK   64 (407)
Q Consensus         3 TP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~-~~F~F~~~----------------PYyLRL~fp~~lved~~~-~a~   64 (407)
                      .|.+.|.++++.++|.+.+|-++..++++.+++ +..+...+                .|.-++.||..+-. +.- +|+
T Consensus        24 ~P~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~-~~i~~A~  102 (123)
T 3aab_A           24 YPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAK-DAEISGK  102 (123)
T ss_dssp             CSCEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECT-TCCCEEE
T ss_pred             CCcEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCc-chhCeeE
Confidence            589999999999999999999999999999999 98888887                67778999998654 445 899


Q ss_pred             eeCCCcEEEEEEeccCCC
Q psy5045          65 YDSDKGQFTFTVIKVNTG   82 (407)
Q Consensus        65 Yd~d~g~~tv~lpKe~~G   82 (407)
                      |+  +|.++|++||..+.
T Consensus       103 ~~--~GvL~I~lPK~~~~  118 (123)
T 3aab_A          103 YE--NGVLTIRIPIAGTS  118 (123)
T ss_dssp             EE--TTEEEEEEEGGGEE
T ss_pred             Ec--CCEEEEEEEcCCCC
Confidence            95  89999999998764

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=97.85  E-value=5.5e-05  Score=65.34  Aligned_cols=82  Identities=9%  Similarity=0.050  Sum_probs=71.8

Q ss_pred             CceeEeeecCCeEEEEEecc-cccCCcceEEEeCcEEEEeec--CceeeecCCCCcccCCCCcceeeCCCcEEEEEEecc
Q psy5045           3 TPMFELLQSEEDVTIIIKAP-YANIADTEVYVEDTDFRFSSS--PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKV   79 (407)
Q Consensus         3 TP~F~itQd~~fv~I~I~~p-~~~~~~~ei~vd~~~F~F~~~--PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe   79 (407)
                      ||++.-+|+.+.|+|.|.+| .+++.++.+.+..+-+.|.++  | ++-+.|.++|..++   ++|....+.+.|+|-|.
T Consensus         4 ~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~g~~-~~~~~L~~~I~~e~---S~w~i~~~kv~i~L~K~   79 (131)
T 2o30_A            4 EAKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQGEI-VIDGELLHEVDVSS---LWWVINGDVVDVNVTKK   79 (131)
T ss_dssp             -CCCEEEEETTEEEEEEECC---CCSCEEEEEETTEEEEEETTEE-EEEEEBSSCEEEEE---EEEEEETTEEEEEEEES
T ss_pred             CCcEEEEecCCEEEEEEECCCCCCccceEEEEECCEEEEEECCEe-eEcccccccccccc---CEEEEeCCEEEEEEEEC
Confidence            89999999999999999986 678999999999999999887  7 99999999999866   67888888899999999


Q ss_pred             CCCCCCCCCc
Q psy5045          80 NTGEHFPDLD   89 (407)
Q Consensus        80 ~~Ge~F~dLD   89 (407)
                       .|+.++.|-
T Consensus        80 -~~~~W~~L~   88 (131)
T 2o30_A           80 -RNEWWDSLL   88 (131)
T ss_dssp             -SCCCCSCSB
T ss_pred             -CCCCCcccc
Confidence             788888873

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=97.85  E-value=7.6e-05  Score=63.78  Aligned_cols=84  Identities=11%  Similarity=0.172  Sum_probs=73.0

Q ss_pred             CCceeEeeecCCeEEEEEecc-cc-cCCcceEEEeCcEEEEee-----cCceeeecCCCCcccCCCCcceeeCCCcE-EE
Q psy5045           2 LTPMFELLQSEEDVTIIIKAP-YA-NIADTEVYVEDTDFRFSS-----SPYYLRLNFPGPIKETDHTSGKYDSDKGQ-FT   73 (407)
Q Consensus         2 iTP~F~itQd~~fv~I~I~~p-~~-~~~~~ei~vd~~~F~F~~-----~PYyLRL~fp~~lved~~~~a~Yd~d~g~-~t   73 (407)
                      .+|++.-+|+.+.|+|.|.+| .+ ++.++.+.+..+-+.|.+     .+||+-+.|.++|..++   ++|...++. +.
T Consensus        18 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~~~L~~~I~~e~---S~w~i~~~k~v~   94 (124)
T 1wgv_A           18 VRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTES---SLWSLEPGKCVL   94 (124)
T ss_dssp             CCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTT---CEEEECTTSEEE
T ss_pred             cCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCCCceEEcccccCcCCCcC---CEEEEeCCCEEE
Confidence            479999999999999999988 56 899999999999999998     35899999999999876   568887775 99


Q ss_pred             EEEeccCCCCCCCCCc
Q psy5045          74 FTVIKVNTGEHFPDLD   89 (407)
Q Consensus        74 v~lpKe~~Ge~F~dLD   89 (407)
                      |+|-|... +.++.|-
T Consensus        95 i~L~K~~~-~~W~~L~  109 (124)
T 1wgv_A           95 VNLSKVGE-YWWNAIL  109 (124)
T ss_dssp             EEECBSSS-CCCSCSB
T ss_pred             EEEEECCC-CCCcCcc
Confidence            99999965 5777663

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=97.76  E-value=7.9e-05  Score=66.59  Aligned_cols=82  Identities=15%  Similarity=0.240  Sum_probs=73.0

Q ss_pred             CceeEeeecCCeEEEEEecc-cccCCcceEEEeCcEEEEeec--CceeeecCCCCcccCCCCcceeeCCCcE-EEEEEec
Q psy5045           3 TPMFELLQSEEDVTIIIKAP-YANIADTEVYVEDTDFRFSSS--PYYLRLNFPGPIKETDHTSGKYDSDKGQ-FTFTVIK   78 (407)
Q Consensus         3 TP~F~itQd~~fv~I~I~~p-~~~~~~~ei~vd~~~F~F~~~--PYyLRL~fp~~lved~~~~a~Yd~d~g~-~tv~lpK   78 (407)
                      +|.+.-+|+.+.|+|.|.+| .++++++.+.+..+-+.|.++  | |+-+.|.++|..++   ++|...++. +.|+|-|
T Consensus        13 ~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~kg~~-~l~g~L~~~I~~ee---S~w~i~~~k~v~I~L~K   88 (157)
T 2rh0_A           13 TPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADE---GTWTLEDRKMVRIVLTK   88 (157)
T ss_dssp             CSSEEEEECSSEEEEEEECCTTCCGGGEEEEECSSEEEEEETTEE-EEEEEBSSCBCGGG---CEEEEECCCEEEEEEEB
T ss_pred             CCcEEEEecCCEEEEEEECCCCCcccceEEEEecCEEEEEECCEE-EEeeccccccCccc---cEEEEcCCcEEEEEEEE
Confidence            79999999999999999987 688999999999999999877  7 69999999999876   568887665 9999999


Q ss_pred             cCC--CCCCCCC
Q psy5045          79 VNT--GEHFPDL   88 (407)
Q Consensus        79 e~~--Ge~F~dL   88 (407)
                      .++  |+.++.|
T Consensus        89 ~~~~~~~~W~~L  100 (157)
T 2rh0_A           89 TKRDAANCWTSL  100 (157)
T ss_dssp             SSCSTTCCCSEE
T ss_pred             cCCCcCCcChhh
Confidence            998  8888765

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=97.71  E-value=2.7e-05  Score=67.84  Aligned_cols=84  Identities=17%  Similarity=0.296  Sum_probs=65.5

Q ss_pred             CCCceeEeeecCCe-------EEEEEecccccCCcceEEEeCcEEEEee-----------cCceeeecCCCCcccCCCCc
Q psy5045           1 MLTPMFELLQSEED-------VTIIIKAPYANIADTEVYVEDTDFRFSS-----------SPYYLRLNFPGPIKETDHTS   62 (407)
Q Consensus         1 MiTP~F~itQd~~f-------v~I~I~~p~~~~~~~ei~vd~~~F~F~~-----------~PYyLRL~fp~~lved~~~~   62 (407)
                      +++|.+.-.|..+.       |+|+|.+|-++  ++.+.+..+.|.|.+           ++|.+.|.|.+.|..++   
T Consensus         4 ~~~p~~~W~Q~~~~~~~~k~~V~ltI~~~~~~--~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~---   78 (134)
T 2cg9_X            4 VINPQVAWAQRSSTTDPERNYVLITVSIADCD--APELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEK---   78 (134)
T ss_dssp             -------CBCCCEEECCCSSEEEEECCCSSEE--SCCCCBCSSEEEECCEEC-------CEEBCEEEECSSCCCSSS---
T ss_pred             ccCCCEEEEeCCCCcCCcCCEEEEEEEecCCC--ceEEEEECCEEEEEEecccccCCccCceEEEEEEChhhccccc---
Confidence            46899999999877       99999999875  778888999999974           47999999999998754   


Q ss_pred             ceeeCCCcE-EEEEEeccCC-CCCCCCCc
Q psy5045          63 GKYDSDKGQ-FTFTVIKVNT-GEHFPDLD   89 (407)
Q Consensus        63 a~Yd~d~g~-~tv~lpKe~~-Ge~F~dLD   89 (407)
                      ++|....+. +.|+|.|..+ |++++-|-
T Consensus        79 S~~~v~~~~~vei~L~K~~~~~~~W~rL~  107 (134)
T 2cg9_X           79 TMHKVANGQHYFLKLYKKDLESEYWPRLT  107 (134)
T ss_dssp             EEEEECCC--CEEEEEECSSSSCCCSCSS
T ss_pred             cEEEECCCEEEEEEEEECCCCCCCCCcee
Confidence            678887777 9999999996 78999874

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=97.68  E-value=0.00021  Score=62.44  Aligned_cols=84  Identities=8%  Similarity=0.138  Sum_probs=75.4

Q ss_pred             CceeEeeec-CCeEEEEEecccccCCcceEEEeCcEEEEeec-----------------CceeeecCCCCcccCCCCcce
Q psy5045           3 TPMFELLQS-EEDVTIIIKAPYANIADTEVYVEDTDFRFSSS-----------------PYYLRLNFPGPIKETDHTSGK   64 (407)
Q Consensus         3 TP~F~itQd-~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~-----------------PYyLRL~fp~~lved~~~~a~   64 (407)
                      +|++.-.|+ .+.|+|.|.++-++..++.+.+..+.|.|.++                 +|.+.+.|-+.|..++   ++
T Consensus        19 ~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~---S~   95 (134)
T 1wh0_A           19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQ---CT   95 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEE---EE
T ss_pred             CCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchh---CE
Confidence            589999999 99999999999998899999999999999985                 8999999999998754   67


Q ss_pred             eeCCCcEEEEEEeccCCCCCCCCCcc
Q psy5045          65 YDSDKGQFTFTVIKVNTGEHFPDLDL   90 (407)
Q Consensus        65 Yd~d~g~~tv~lpKe~~Ge~F~dLDm   90 (407)
                      |......+.|+|.|.. +..++.|..
T Consensus        96 ~~v~~~kIeI~L~K~e-~~~W~~L~~  120 (134)
T 1wh0_A           96 FCFTASRIDICLRKRQ-SQRWGGLEA  120 (134)
T ss_dssp             EEECSSEEEEEEEESS-SCCCSCSBC
T ss_pred             EEEeCCEEEEEEEECC-CCccccccc
Confidence            8888899999999996 558998864

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=97.51  E-value=0.00012  Score=64.92  Aligned_cols=81  Identities=21%  Similarity=0.262  Sum_probs=70.3

Q ss_pred             CCceeEeeecCCeEEEEEecccccCCcceEEEe-CcEEEEeec-----CceeeecCCCCcccCCCCcceeeCCCcEEEEE
Q psy5045           2 LTPMFELLQSEEDVTIIIKAPYANIADTEVYVE-DTDFRFSSS-----PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFT   75 (407)
Q Consensus         2 iTP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd-~~~F~F~~~-----PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~   75 (407)
                      ++|++.-.|..+.|+|+|.+|-+  .++.+.+. .+.|.|.++     .|.+.|.|=+.|...    ++|......+.|+
T Consensus         3 ~~P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~~~~~~~y~~~l~L~~~Idpe----S~~~v~~~kIei~   76 (150)
T 2kmw_A            3 RNPEVLWAQRSDKVYLTVALPDA--KDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTE----YRKNVGLRNIIFS   76 (150)
T ss_dssp             ECCCEEEEECSSEEEEEECCSSE--EEEEECCCTTEEEEEEEETTTTEEEEEEEEBSSCEEEE----EEEEEESSSEEEE
T ss_pred             cCCcEEEEeCCCEEEEEEEeCCC--CceEEEEecCCEEEEEEEcCCCceEEEEeEhhhccccc----ceEEecCCEEEEE
Confidence            58999999999999999999986  46778888 788999885     699999999999885    5688877889999


Q ss_pred             EeccCCCCCCCCCc
Q psy5045          76 VIKVNTGEHFPDLD   89 (407)
Q Consensus        76 lpKe~~Ge~F~dLD   89 (407)
                      |.|..+| .++-|-
T Consensus        77 L~K~e~~-~W~rL~   89 (150)
T 2kmw_A           77 IQKEERS-WWTRLL   89 (150)
T ss_dssp             EEECCSS-CCSCSB
T ss_pred             EEECCCC-cCcccc
Confidence            9999865 888774

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=97.49  E-value=0.00039  Score=61.44  Aligned_cols=78  Identities=15%  Similarity=0.189  Sum_probs=65.8

Q ss_pred             CCceeEeeecCCeEEEEEecccccCCcceEEE-eCcEEEEee--------------------cCceeeecCCCCcccCCC
Q psy5045           2 LTPMFELLQSEEDVTIIIKAPYANIADTEVYV-EDTDFRFSS--------------------SPYYLRLNFPGPIKETDH   60 (407)
Q Consensus         2 iTP~F~itQd~~fv~I~I~~p~~~~~~~ei~v-d~~~F~F~~--------------------~PYyLRL~fp~~lved~~   60 (407)
                      ..|...|.++++.++|.+.+|-++..+++|.| +|+..+...                    ..|.-++.||..+-. +.
T Consensus        42 ~~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~-~~  120 (151)
T 1gme_A           42 ANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKV-EE  120 (151)
T ss_dssp             GGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCG-GG
T ss_pred             cCCceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccc-cc
Confidence            36999999999999999999999999999999 577666654                    357778999998654 56


Q ss_pred             CcceeeCCCcEEEEEEeccCCC
Q psy5045          61 TSGKYDSDKGQFTFTVIKVNTG   82 (407)
Q Consensus        61 ~~a~Yd~d~g~~tv~lpKe~~G   82 (407)
                      .+|+|  ++|.++|++||..+.
T Consensus       121 i~A~~--~nGvL~I~lPK~~~~  140 (151)
T 1gme_A          121 VKAGL--ENGVLTVTVPKAEVK  140 (151)
T ss_dssp             CEEEE--ETTEEEEEEECCCCC
T ss_pred             eEEEE--ECCEEEEEEEccCcC
Confidence            78999  589999999998764

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=97.48  E-value=0.00036  Score=62.02  Aligned_cols=74  Identities=14%  Similarity=0.376  Sum_probs=63.6

Q ss_pred             eEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee---------------------cCceeeecCCCCcccCCCCcce
Q psy5045           6 FELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS---------------------SPYYLRLNFPGPIKETDHTSGK   64 (407)
Q Consensus         6 F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~---------------------~PYyLRL~fp~~lved~~~~a~   64 (407)
                      ..|..+++.++|.+.+|-++..+++|.++++..+...                     ..|.-++.||..| +.+..+|+
T Consensus        59 vdi~e~~~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~v-d~~~i~A~  137 (161)
T 4eld_A           59 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATV-KEENASAK  137 (161)
T ss_dssp             EEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCB-CGGGCEEE
T ss_pred             eeEEEeCCEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCc-ccccEEEE
Confidence            8999999999999999999999999999999888743                     3466789999987 44558899


Q ss_pred             eeCCCcEEEEEEeccCCC
Q psy5045          65 YDSDKGQFTFTVIKVNTG   82 (407)
Q Consensus        65 Yd~d~g~~tv~lpKe~~G   82 (407)
                      |+  +|.++|+|||....
T Consensus       138 ~~--nGvL~I~lpK~~~~  153 (161)
T 4eld_A          138 FE--NGVLSVILPKAESS  153 (161)
T ss_dssp             EE--TTEEEEEEEBCGGG
T ss_pred             EE--CCEEEEEEEcCCCC
Confidence            95  89999999997653

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=97.05  E-value=0.004  Score=51.70  Aligned_cols=76  Identities=17%  Similarity=0.284  Sum_probs=63.2

Q ss_pred             eeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeec-------------CceeeecCCCCcccCCCCcceeeCCCcE
Q psy5045           5 MFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS-------------PYYLRLNFPGPIKETDHTSGKYDSDKGQ   71 (407)
Q Consensus         5 ~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~-------------PYyLRL~fp~~lved~~~~a~Yd~d~g~   71 (407)
                      .=.|..+++.+.|.+.+|-++..++++.++++...-..+             -|.-++.||..+ +.+.-+|+|. ++|.
T Consensus         4 ~~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~v-d~~~i~A~~s-~~Gv   81 (106)
T 3l1e_A            4 ISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNV-DQSALSCSLS-ADGM   81 (106)
T ss_dssp             SEEEEECSSEEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTB-CTTSCEEEEC-TTSE
T ss_pred             ceEEEEcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCc-ChhHcEEEEC-CCCE
Confidence            346889999999999999999999999999998766653             267779999975 5566788884 6899


Q ss_pred             EEEEEeccCCC
Q psy5045          72 FTFTVIKVNTG   82 (407)
Q Consensus        72 ~tv~lpKe~~G   82 (407)
                      ++|++||..+-
T Consensus        82 L~I~~PK~~~~   92 (106)
T 3l1e_A           82 LTFSGPKIPSG   92 (106)
T ss_dssp             EEEEEEBCCCC
T ss_pred             EEEEEEccCcc
Confidence            99999998773

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=96.95  E-value=0.0023  Score=51.50  Aligned_cols=71  Identities=7%  Similarity=0.116  Sum_probs=54.8

Q ss_pred             ecCCeEEEEEecccccCCcceEEEeCcEEEEeec-------------CceeeecCCCCcccCCCCcceeeCCCcEEEEEE
Q psy5045          10 QSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS-------------PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTV   76 (407)
Q Consensus        10 Qd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~-------------PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~l   76 (407)
                      .+++.++|.+.+|-++..+++|.++++..+...+             -|.-++.||..+-. +.-+|+|. .+|.++|++
T Consensus         3 ~~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~-~~i~A~~~-~~GvL~I~~   80 (90)
T 2y1y_A            3 MEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDP-LTITSSMS-SDGVLTVNG   80 (90)
T ss_dssp             ---CCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCG-GGCEEEEC-TTSEEEEEE
T ss_pred             cCCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcCh-hHcEEEEC-CCCEEEEEE
Confidence            4678899999999999999999999988776664             36778999988744 55778885 689999999


Q ss_pred             eccCCC
Q psy5045          77 IKVNTG   82 (407)
Q Consensus        77 pKe~~G   82 (407)
                      ||..+.
T Consensus        81 pK~~~~   86 (90)
T 2y1y_A           81 PRKQVS   86 (90)
T ss_dssp             CBC---
T ss_pred             EcCCCC
Confidence            997653

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=96.94  E-value=0.0028  Score=50.54  Aligned_cols=70  Identities=9%  Similarity=0.104  Sum_probs=58.1

Q ss_pred             eeecCCeEEEEEecccccCCcceEEEeCcEEEEeec-------------CceeeecCCCCcccCCCCcceeeCCCcEEEE
Q psy5045           8 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS-------------PYYLRLNFPGPIKETDHTSGKYDSDKGQFTF   74 (407)
Q Consensus         8 itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~-------------PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv   74 (407)
                      ++++++.+.|.+.+|-++..++++.|+++..+-..+             .|.-++.||..+- .+.-+|+|. .+|.++|
T Consensus         2 ~~E~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd-~~~i~A~~~-~~GvL~I   79 (85)
T 3q9p_A            2 GSHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVD-PTQVSSSLS-PEGTLTV   79 (85)
T ss_dssp             -CCCCCEEEEEEECTTTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCC-GGGCEEEEC-TTSEEEE
T ss_pred             ccCcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcC-hHHcEEEEC-CCCEEEE
Confidence            467899999999999999999999999998776653             4667799999864 455788885 4799999


Q ss_pred             EEecc
Q psy5045          75 TVIKV   79 (407)
Q Consensus        75 ~lpKe   79 (407)
                      ++||.
T Consensus        80 ~lPK~   84 (85)
T 3q9p_A           80 EAPMP   84 (85)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            99994

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=96.89  E-value=0.0039  Score=51.26  Aligned_cols=75  Identities=7%  Similarity=0.154  Sum_probs=61.6

Q ss_pred             eEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeec-------------CceeeecCCCCcccCCCCcceeeCCCcEE
Q psy5045           6 FELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS-------------PYYLRLNFPGPIKETDHTSGKYDSDKGQF   72 (407)
Q Consensus         6 F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~-------------PYyLRL~fp~~lved~~~~a~Yd~d~g~~   72 (407)
                      ..|..+++.+.|.+.+|-++..++++.++++......+             -|.-++.||..+ +.+.-+|+|. .+|.+
T Consensus         4 vdi~e~~~~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~v-d~~~i~A~~s-~nGvL   81 (101)
T 2wj5_A            4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGV-DPAAVTSALS-PEGVL   81 (101)
T ss_dssp             CCCCCCSSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTB-CTTCCEEEEC-TTSEE
T ss_pred             EEEEEeCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCc-ChhHCEEEEC-CCCEE
Confidence            35778899999999999999999999999987766553             266789999875 5566778884 48999


Q ss_pred             EEEEeccCCC
Q psy5045          73 TFTVIKVNTG   82 (407)
Q Consensus        73 tv~lpKe~~G   82 (407)
                      +|++||..+.
T Consensus        82 ~I~lPK~~~~   91 (101)
T 2wj5_A           82 SIQATPASAQ   91 (101)
T ss_dssp             EEEECBCCCC
T ss_pred             EEEEECCCcC
Confidence            9999998764

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=95.78  E-value=0.026  Score=51.14  Aligned_cols=73  Identities=8%  Similarity=0.140  Sum_probs=57.4

Q ss_pred             EeeecCCeEEEEEecccccCCcceEEEeCcEEEEee-------------cCceeeecCCCCcccCCCCcceeeCCCcEEE
Q psy5045           7 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-------------SPYYLRLNFPGPIKETDHTSGKYDSDKGQFT   73 (407)
Q Consensus         7 ~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-------------~PYyLRL~fp~~lved~~~~a~Yd~d~g~~t   73 (407)
                      .|..+++.+.|.+.+|-++..+++|.|+++..+-..             .-|.-++.||..+ +.+.-+|+|. ++|.++
T Consensus        67 dv~e~~d~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~V-d~~~i~A~~s-~dGvL~  144 (175)
T 2klr_A           67 EMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADV-DPLTITSSLS-SDGVLT  144 (175)
T ss_dssp             --CCCCSEEEEEECCSSCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTC-CTTTCEEEEC-TTSCEE
T ss_pred             EEEEcCCeEEEEEECCCCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCc-ChhHeEEEEc-CCCEEE
Confidence            577899999999999999999999999988665544             3477789999886 4555778884 589999


Q ss_pred             EEEeccCC
Q psy5045          74 FTVIKVNT   81 (407)
Q Consensus        74 v~lpKe~~   81 (407)
                      |++||..+
T Consensus       145 I~lPK~~~  152 (175)
T 2klr_A          145 VNGPRKQV  152 (175)
T ss_dssp             EEEECC--
T ss_pred             EEEECCCC
Confidence            99999754

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=95.46  E-value=0.042  Score=54.16  Aligned_cols=78  Identities=3%  Similarity=0.098  Sum_probs=64.8

Q ss_pred             CceeEeeecCC----eEEEEEecccccCCcceEEEeCcEEEEeec------------CceeeecCCCCcccCCCCcceee
Q psy5045           3 TPMFELLQSEE----DVTIIIKAPYANIADTEVYVEDTDFRFSSS------------PYYLRLNFPGPIKETDHTSGKYD   66 (407)
Q Consensus         3 TP~F~itQd~~----fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~------------PYyLRL~fp~~lved~~~~a~Yd   66 (407)
                      +|...|..+++    .+.|.+-+|-++..+++|.|+++..+-+.+            -|.-++.||..| +-+.-+|+|.
T Consensus        98 ~p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~V-d~e~i~A~~~  176 (314)
T 2bol_A           98 DFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSV-DRNHIQATIT  176 (314)
T ss_dssp             GGGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTB-CGGGCEEEEC
T ss_pred             CCccceEEcCCCCceEEEEEEECCCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCc-cccccEEEEe
Confidence            46666666777    899999999999999999999999888774            577889999986 4455778886


Q ss_pred             CCCcEEEEEEeccCCC
Q psy5045          67 SDKGQFTFTVIKVNTG   82 (407)
Q Consensus        67 ~d~g~~tv~lpKe~~G   82 (407)
                      . +|.++|++||..+.
T Consensus       177 ~-nGVL~I~lPK~~~~  191 (314)
T 2bol_A          177 T-DDVLVIEAPVNEPN  191 (314)
T ss_dssp             S-SSEEEEEEEBSSCC
T ss_pred             C-CCEEEEEEeccCcc
Confidence            5 89999999998764

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=88.59  E-value=0.72  Score=45.37  Aligned_cols=66  Identities=12%  Similarity=0.248  Sum_probs=52.3

Q ss_pred             CCeEEEEEec-ccccCCcceEEEeCcEEEEeecC----------------ceeeecCCCCcccCCCCcceeeCCCcEEEE
Q psy5045          12 EEDVTIIIKA-PYANIADTEVYVEDTDFRFSSSP----------------YYLRLNFPGPIKETDHTSGKYDSDKGQFTF   74 (407)
Q Consensus        12 ~~fv~I~I~~-p~~~~~~~ei~vd~~~F~F~~~P----------------YyLRL~fp~~lved~~~~a~Yd~d~g~~tv   74 (407)
                      ++.+.|.+.+ |-++..+++|.|+++..+-+.+=                |.=++.||..| +.+.-+|+|.  +|.++|
T Consensus       232 ~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~v-d~~~i~A~~~--dGvL~i  308 (314)
T 2bol_A          232 SKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVV-DASKTQAEIV--DGLMVV  308 (314)
T ss_dssp             CEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEE-CGGGCEEEEE--TTEEEE
T ss_pred             CcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCc-ChHHeEEEEe--CCEEEE
Confidence            4577888888 99999999999999988776541                33457888776 4566789996  799999


Q ss_pred             EEeccC
Q psy5045          75 TVIKVN   80 (407)
Q Consensus        75 ~lpKe~   80 (407)
                      ++||..
T Consensus       309 ~~Pk~~  314 (314)
T 2bol_A          309 EAPLFK  314 (314)
T ss_dssp             EEEEEC
T ss_pred             EEecCC
Confidence            999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	407
d1ejfa_	110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	0.002

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 10 QSEEDVTIIIKAPYANIADTEVYVEDTDFRFS------SSPYYLRLNFPGPIKETDHTSG 63
             + V I       +  D  V  E +   FS      +  +   ++    I   D    
Sbjct: 10 DRRDYVFIEFCVE--DSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCI---DPNDS 64

Query: 64 KYDSDKGQFTFTVIKVNTGEHFPDL 88
          K+          + K  +G+ +P L
Sbjct: 65 KHKRTDRSILCCLRKGESGQSWPRL 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	407
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	98.24
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	97.83
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	97.73
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	97.56
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	97.26
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	97.25
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	96.37

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.5e-06  Score=68.12  Aligned_cols=83  Identities=16%  Similarity=0.258  Sum_probs=74.2

Q ss_pred             CceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeec-----CceeeecCCCCcccCCCCcceeeCCCcEEEEEEe
Q psy5045           3 TPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS-----PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVI   77 (407)
Q Consensus         3 TP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~-----PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lp   77 (407)
                      -+||+-.|+++.|+|.|.+|-++..++.+.+.+..|.+.++     +|.+-+.|-++|..++   ++|....+.+.|+|.
T Consensus         2 k~ry~W~Qt~~~V~i~i~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~---s~~~~~~~kiei~L~   78 (92)
T d1rl1a_           2 KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ---STFKVLSTKIEIKLK   78 (92)
T ss_dssp             CCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGG---EEEEECSSSEEEEEE
T ss_pred             CCceeEEeCCCEEEEEEEeCCCChHheEEEEecCEEEEEEEcCCCcEEEEEEEcCcccCchh---cEEEEeCCEEEEEEE
Confidence            37899999999999999999999999999999999999875     7999999999999765   678888899999999


Q ss_pred             ccCCCCCCCCCc
Q psy5045          78 KVNTGEHFPDLD   89 (407)
Q Consensus        78 Ke~~Ge~F~dLD   89 (407)
                      |..+| .++.|.
T Consensus        79 K~~~~-~W~~L~   89 (92)
T d1rl1a_          79 KPEAV-RWEKLE   89 (92)
T ss_dssp             CSSCC-CCSSSB
T ss_pred             ECCCC-cCcCcc
Confidence            99765 798874

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.5e-05  Score=63.17  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=69.2

Q ss_pred             CCceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeec------CceeeecCCCCcccCCCCcceeeCCCcEEEEE
Q psy5045           2 LTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS------PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFT   75 (407)
Q Consensus         2 iTP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~------PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~   75 (407)
                      =-|...=.|+.+.|+|.|.+|.  +.+..+.|+.+.+.|.+.      .|+|-+.|.++|..++   +++....+.+.|+
T Consensus         2 ~p~~~~W~Qt~~~V~i~I~v~~--~~~~~v~i~~~~l~~~~~~~~~~~~y~l~~~L~~~I~~~~---s~~~v~~~kiei~   76 (110)
T d1ejfa_           2 QPASAKWYDRRDYVFIEFCVED--SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPND---SKHKRTDRSILCC   76 (110)
T ss_dssp             BCCCEEEEECSSEEEEEECCTT--EEEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEE---EEEEECSSCEEEE
T ss_pred             CCCCcEEEECCCEEEEEEEeCC--CCCceEEEEeceEEEEEEecCCCceEEEEEEcccCcccCc---cEEEEeCCEEEEE
Confidence            3466788999999999999995  567888888888777543      4999999999998755   6788888899999


Q ss_pred             EeccCCCCCCCCC
Q psy5045          76 VIKVNTGEHFPDL   88 (407)
Q Consensus        76 lpKe~~Ge~F~dL   88 (407)
                      |-|..+|+..+.|
T Consensus        77 L~K~~~~~~W~~L   89 (110)
T d1ejfa_          77 LRKGESGQSWPRL   89 (110)
T ss_dssp             EEESSTTCCCSSS
T ss_pred             EEEcCCCCCCCce
Confidence            9999999988765

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=8e-05  Score=61.36  Aligned_cols=83  Identities=8%  Similarity=0.133  Sum_probs=70.5

Q ss_pred             CceeEeeecCCeEEEEEeccc--ccCCcceEEEeCcEEEEeec-----CceeeecCCCCcccCCCCcceeeCCCcEEEEE
Q psy5045           3 TPMFELLQSEEDVTIIIKAPY--ANIADTEVYVEDTDFRFSSS-----PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFT   75 (407)
Q Consensus         3 TP~F~itQd~~fv~I~I~~p~--~~~~~~ei~vd~~~F~F~~~-----PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~   75 (407)
                      +++|.-+|+++.|.|.|.+|-  +++.++.+.+..+-+.+.++     +|+|...|.++|..++   ++|-.+++.+.+.
T Consensus        19 ~~~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~~~~~~~~~l~g~L~~~I~~de---S~w~i~~~~~~i~   95 (124)
T d1wgva_          19 RENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTES---SLWSLEPGKCVLV   95 (124)
T ss_dssp             CSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTT---CEEEECTTSEEEE
T ss_pred             CCCeEEEeECCEEEEEEEeCCCCcchhhEEEEEEeCEEEEEEeccCCcceEEeCcccCcccccc---cEEEEeCCCEEEE
Confidence            689999999999999999984  68899999999999999875     7999999999999887   4577777766666


Q ss_pred             EeccCCCCCCCCC
Q psy5045          76 VIKVNTGEHFPDL   88 (407)
Q Consensus        76 lpKe~~Ge~F~dL   88 (407)
                      +-|..+|+.++.|
T Consensus        96 ~lkK~~~~~W~~L  108 (124)
T d1wgva_          96 NLSKVGEYWWNAI  108 (124)
T ss_dssp             EECBSSSCCCSCS
T ss_pred             EEEecCCCcChhh
Confidence            6666677788877

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.56  E-value=0.00014  Score=58.92  Aligned_cols=75  Identities=15%  Similarity=0.400  Sum_probs=62.5

Q ss_pred             CceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee---------------------cCceeeecCCCCcccCCCC
Q psy5045           3 TPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS---------------------SPYYLRLNFPGPIKETDHT   61 (407)
Q Consensus         3 TP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~---------------------~PYyLRL~fp~~lved~~~   61 (407)
                      .| ..|.++++.+.|.+.+|-++..++++.|+++......                     ..|+.++.||..+ +.++.
T Consensus        11 ~p-vdi~e~~~~~~i~~~lPG~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~v-d~~~i   88 (115)
T d1shsa_          11 MP-ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATV-KEENA   88 (115)
T ss_dssp             CC-EEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCB-CGGGC
T ss_pred             Cc-eEEEEcCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCce-eecce
Confidence            35 7999999999999999999999999999999776654                     2356679999886 55666


Q ss_pred             cceeeCCCcEEEEEEeccCC
Q psy5045          62 SGKYDSDKGQFTFTVIKVNT   81 (407)
Q Consensus        62 ~a~Yd~d~g~~tv~lpKe~~   81 (407)
                      +|+|  ++|.++|+|||..+
T Consensus        89 ~A~~--~nGvL~I~lpK~~~  106 (115)
T d1shsa_          89 SAKF--ENGVLSVILPKAES  106 (115)
T ss_dssp             EEEE--ETTEEEEEEEBCGG
T ss_pred             EEEE--ECCEEEEEEEeCCC
Confidence            7777  58999999999865

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=97.26  E-value=0.00051  Score=58.20  Aligned_cols=76  Identities=16%  Similarity=0.208  Sum_probs=62.8

Q ss_pred             CceeEeeecCCeEEEEEecccccCCcceEEEe-CcEEEEee--------------------cCceeeecCCCCcccCCCC
Q psy5045           3 TPMFELLQSEEDVTIIIKAPYANIADTEVYVE-DTDFRFSS--------------------SPYYLRLNFPGPIKETDHT   61 (407)
Q Consensus         3 TP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd-~~~F~F~~--------------------~PYyLRL~fp~~lved~~~   61 (407)
                      .|+..+..+++.++|.+.+|-++..+++|.|+ |+..+...                    ..|.-++.||..+ +-+..
T Consensus        42 ~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~v-d~~~i  120 (150)
T d1gmea_          42 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDA-KVEEV  120 (150)
T ss_dssp             GGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCC-CGGGC
T ss_pred             CCceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCe-eecee
Confidence            47889999999999999999999999999996 56666432                    1456679999886 55667


Q ss_pred             cceeeCCCcEEEEEEeccCC
Q psy5045          62 SGKYDSDKGQFTFTVIKVNT   81 (407)
Q Consensus        62 ~a~Yd~d~g~~tv~lpKe~~   81 (407)
                      +|+|.  +|.++|+|||..+
T Consensus       121 ~A~~~--nGvL~I~lpK~~~  138 (150)
T d1gmea_         121 KAGLE--NGVLTVTVPKAEV  138 (150)
T ss_dssp             EEEEE--TTEEEEEEECCCC
T ss_pred             EEEEE--CCEEEEEEEcCCc
Confidence            89995  8999999999765

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00082  Score=56.00  Aligned_cols=84  Identities=15%  Similarity=0.175  Sum_probs=70.6

Q ss_pred             CCceeEeeecCCeEEEEEecc---cccCCcceEEEeCcEEEEeec--CceeeecCCCCcccCCCCcceeeC-CCcEEEEE
Q psy5045           2 LTPMFELLQSEEDVTIIIKAP---YANIADTEVYVEDTDFRFSSS--PYYLRLNFPGPIKETDHTSGKYDS-DKGQFTFT   75 (407)
Q Consensus         2 iTP~F~itQd~~fv~I~I~~p---~~~~~~~ei~vd~~~F~F~~~--PYyLRL~fp~~lved~~~~a~Yd~-d~g~~tv~   75 (407)
                      -+|.+.-+|+.+.|.|.|.+|   .++..++.+.+..+-+.+..+  |.+|.-.|.+.|..++   +++-. +...+.|.
T Consensus         6 ~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~~~~ll~g~L~~~I~~de---s~W~ied~~~l~i~   82 (131)
T d1wfia_           6 SGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEE---SSWLIEDGKVVTVH   82 (131)
T ss_dssp             SCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTT---CEEEEETTTEEEEE
T ss_pred             CCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEcCCceeecccccCcccccc---cEEEEeCCCEEEEE
Confidence            379999999999999998754   478999999999999998764  5788889999999887   34655 45578999


Q ss_pred             EeccCCCCCCCCC
Q psy5045          76 VIKVNTGEHFPDL   88 (407)
Q Consensus        76 lpKe~~Ge~F~dL   88 (407)
                      |-|..+|..++.|
T Consensus        83 L~K~~~~~~W~~l   95 (131)
T d1wfia_          83 LEKINKMEWWNRL   95 (131)
T ss_dssp             EEBSSSCCCCSCS
T ss_pred             EEECCCCccCHHH
Confidence            9999999888766

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.014  Score=48.73  Aligned_cols=81  Identities=9%  Similarity=0.148  Sum_probs=70.6

Q ss_pred             EeeecCCeEEEEEecccccCCcceEEEeCcEEEEeec-----------------CceeeecCCCCcccCCCCcceeeCCC
Q psy5045           7 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS-----------------PYYLRLNFPGPIKETDHTSGKYDSDK   69 (407)
Q Consensus         7 ~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~-----------------PYyLRL~fp~~lved~~~~a~Yd~d~   69 (407)
                      +-.|++++|+|.|.+.-+...++.+.+.++.|....+                 +|.+-|+|-|.|..+.   ++|.+..
T Consensus        24 wyq~~~~~V~VtI~~K~v~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~---S~~~v~~  100 (134)
T d1wh0a_          24 SYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQ---CTFCFTA  100 (134)
T ss_dssp             EEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEE---EEEEECS
T ss_pred             eeecCCCEEEEEEEeCCCchhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhH---cEEEeCC
Confidence            3445678999999999999999999999999988874                 7999999999999865   7899999


Q ss_pred             cEEEEEEeccCCCCCCCCCcch
Q psy5045          70 GQFTFTVIKVNTGEHFPDLDLI   91 (407)
Q Consensus        70 g~~tv~lpKe~~Ge~F~dLDm~   91 (407)
                      ..+.|+|.|..+| .++.|.-.
T Consensus       101 ~kiei~L~K~~~~-~W~~Le~~  121 (134)
T d1wh0a_         101 SRIDICLRKRQSQ-RWGGLEAP  121 (134)
T ss_dssp             SEEEEEEEESSSC-CCSCSBCC
T ss_pred             CEEEEEEEeCCCC-cCcCcccc
Confidence            9999999999876 69998743