Psyllid ID: psy504

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MFHMKFILRLSPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPILPQEMFKANGFVLVILKEMWMEIKFTAVG
Secondary Structure (PSIPRED)
cccccHHccccccccccccccccccccccccccEEEEEEEcccccccEEEEEEccccccccccHHHHHHHHHHHHHHHccccccEEEEEEccccEEEccccHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHccEEEEccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHcccccccccHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHcHHHHHHHHHccccccccccccccccccEEEEccccccHHHHHHHHHcccccccccccccccccHHHHHHcccEEEHHHHHHHHEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccccccccccccHHHHcccccccEEEEEEccHHHccEEEEEEccHHHcccEcHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEccEcHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEcEEEEcHHHHHHHHccEEEEEcccEEEccHHHHcccccccHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHcEHHHHEccHcHHccccHcccccccccHHHHcccccccccHHHHHcccccccccccccHccccHHHHHHHccHHEHEHHHHHEEEEEEccc
Coil and Loop (DISEMBL)
MFHMKFILRlsparvkvtkwpnystsvskeGRKLTQIIYhnsperpgivelcmnrpqARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVfcagadlkhrltlNEDQIRSFVSTLRYMTcqlesipvpvlavldgsaygggLEMALACDIRVAASNVRMGLVETKlaiipgaggtqrlprivGIPLAALYEDllnndcmssldtrymwctpyrrGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELydefgdlipltaenifaypAGVHIlhgmendarTCDKLIDgvnniadgthswlapilpqemfkANGFVLVILKEMWMEIKFTAVG
Flexible Loop (DISEMBL)
mfhmkfilrlsparvkvtkwpnystsvskegrklTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAgadlkhrltlnedQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLaiipgaggtqrlPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPILPQEMFKANGFVLVILKEMWMEIKFTAVG
Low Complexity Region (SEG)
MFHMKFILRLSPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPILPQEMFKANGFVLVILKEMWMEIKFTAVG
Disordered region (IsUnstruct)
***MKFILRLSPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPILPQEMFKANGFVLVILKEMWMEIKFT***
Disordered Region (DISOPRED)
************************************IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHI**********SIEMSYCGFSLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPILPQEMFKANGFVLVILKEMWMEIKFTAV*
Disordered Region (DISEMBL)
MFHMKFILRLSPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPILPQEMFKANGFVLVILKEMWMEIKFTAVG
Disordered Region (DISPRO)
*FHMKFILRLSPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPILPQEMFKANGFVLVILKEMWMEIKFTAV*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFHMKFILRLSPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPILPQEMFKANGFVLVILKEMWMEIKFTAVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q3TLP5	296	Enoyl-CoA hydratase domai	yes	N/A	0.407	0.493	0.541	1e-40
Q2TBT3	296	Enoyl-CoA hydratase domai	yes	N/A	0.466	0.564	0.491	2e-39
Q86YB7	292	Enoyl-CoA hydratase domai	yes	N/A	0.407	0.5	0.541	7e-39
Q54HG7	303	Methylglutaconyl-CoA hydr	yes	N/A	0.474	0.561	0.457	3e-35
O34893	260	Putative enoyl-CoA hydrat	yes	N/A	0.385	0.530	0.5	1e-34
Q9JLZ3	314	Methylglutaconyl-CoA hydr	no	N/A	0.505	0.576	0.483	1e-33
Q13825	339	Methylglutaconyl-CoA hydr	no	N/A	0.432	0.457	0.516	3e-33
A4YI89	259	3-hydroxypropionyl-coenzy	yes	N/A	0.382	0.528	0.434	1e-25
P52046	261	3-hydroxybutyryl-CoA dehy	yes	N/A	0.416	0.570	0.413	3e-23
Q5QXH7	718	Fatty acid oxidation comp	yes	N/A	0.399	0.199	0.404	3e-22

>sp|Q3TLP5|ECHD2_MOUSE Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Mus musculus GN=Echdc2 PE=2 SV=2

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 107/146 (73%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI E+ MNRP ARNAL    V E+L A+  +R D++VR +L RS VK VFCAGADLK R 
Sbjct: 45  GITEILMNRPNARNALGNVFVSELLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKERE 104

Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
            +++ ++ +FV  LR +  ++ + PVP +A +DG A GGGLE+ALACD+R+AAS+  MGL
Sbjct: 105 QMSDVEVGTFVQRLRGLMSEIAAFPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGL 164

Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
           +ET   ++PGAGGTQRLPR +G+ LA
Sbjct: 165 IETTRGLLPGAGGTQRLPRCLGVALA 190

Mus musculus (taxid: 10090)

>sp|Q2TBT3|ECHD2_BOVIN Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Bos taurus GN=ECHDC2 PE=2 SV=1

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 24  STSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEV 83
           S++    GR++ Q+     P + GI E+ MNRP ARNAL    V ++L A+  +R D +V
Sbjct: 24  SSNPGAAGREI-QVCALAGPNQ-GIAEILMNRPSARNALGNVFVSQLLEALAQLREDRQV 81

Query: 84  RCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143
           R ++ RS VK VFCAGADLK R  ++E ++  FV  LR +  ++ + P P +A +DG A 
Sbjct: 82  RVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLRGLMTEIAAFPAPTIAAMDGFAL 141

Query: 144 GGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           GGGLE+ALACD+RVAAS+  MGL+ET   ++PGAGGTQRLPR +G+ LA
Sbjct: 142 GGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALA 190

Bos taurus (taxid: 9913)

>sp|Q86YB7|ECHD2_HUMAN Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Homo sapiens GN=ECHDC2 PE=2 SV=2

 Score =  161 bits (408), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 102/146 (69%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI E+ MNRP ARNAL    V E+L  +  +R D +VR +L RS VK VFCAGADLK R 
Sbjct: 41  GITEILMNRPSARNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKERE 100

Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
            ++E ++  FV  LR +   + + P P +A +DG A GGGLE+ALACD+RVAAS+  MGL
Sbjct: 101 QMSEAEVGVFVQRLRGLMNDIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGL 160

Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
           +ET   ++PGAGGTQRLPR +G+ LA
Sbjct: 161 IETTRGLLPGAGGTQRLPRCLGVALA 186

Homo sapiens (taxid: 9606)

>sp|Q54HG7|AUHM_DICDI Methylglutaconyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=auh PE=3 SV=1

 Score =  149 bits (377), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/177 (45%), Positives = 111/177 (62%), Gaps = 7/177 (3%)

Query: 23  YSTSVS-KEGRKLTQ------IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVE 75
           +STS S K GRK T       I+     E  GI  +  NR   +NAL   L+ +  + + 
Sbjct: 25  FSTSSSLKFGRKFTTETQQECILERLEGENKGISVISFNRGHVKNALGKNLMNQFRSHLN 84

Query: 76  AIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVL 135
            +R   + R V++RSLV  VFC+GADLK R  +++ +   FV +LR    +LE++ +P +
Sbjct: 85  ELRFCPDTRVVIVRSLVDGVFCSGADLKERALMSQVEASQFVHSLRSSFTELETLQMPTI 144

Query: 136 AVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           A ++G A GGG EM LACD RVA+ + +MGL ET LAIIPGAGGTQRLPR++GIP A
Sbjct: 145 AAIEGVAVGGGTEMVLACDFRVASKSSKMGLPETGLAIIPGAGGTQRLPRLIGIPRA 201

Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA.

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|O34893|YNGF_BACSU Putative enoyl-CoA hydratase/isomerase YngF OS=Bacillus subtilis (strain 168) GN=yngF PE=3 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 97/138 (70%)

Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
           + +NRPQA NAL+A ++  +   ++ I  +  +RCV+L    +  FCAGADLK R+ L E
Sbjct: 17  ITLNRPQAANALSAEMLRNLQMIIQEIEFNSNIRCVILTGTGEKAFCAGADLKERIKLKE 76

Query: 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
           DQ+   VS ++     L+++P PV+A ++GSA GGGLE+ALACD+R+A     +GL ET 
Sbjct: 77  DQVLESVSLIQRTAALLDALPQPVIAAINGSALGGGLELALACDLRIATEAAVLGLPETG 136

Query: 171 LAIIPGAGGTQRLPRIVG 188
           LAIIPGAGGTQRLPR++G
Sbjct: 137 LAIIPGAGGTQRLPRLIG 154

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9JLZ3|AUHM_MOUSE Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 123/186 (66%), Gaps = 5/186 (2%)

Query: 9   RLSPARVKVTKWP--NYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATL 66
           RL PA       P   YS+ V  E       + H   E  GIV L +NR   +NAL+  L
Sbjct: 26  RLGPAAWARGTAPRRGYSSEVKTEDELR---VRHLEEENRGIVVLGINRAYGKNALSKNL 82

Query: 67  VEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126
           ++ +  AV+A++ D++VR +++RS V  +FCAGADLK R  ++  ++  FVS +R +   
Sbjct: 83  LKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVIND 142

Query: 127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRI 186
           + ++PVP +A +DG A GGGLE+ALACDIRVAAS+ +MGLVETKLAIIPG GGTQRLPR 
Sbjct: 143 IANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRA 202

Query: 187 VGIPLA 192
           +G+ LA
Sbjct: 203 IGMSLA 208

Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Has very low enoyl-CoA hydratase activity. Was originally identified as RNA-binding protein that binds in vitro to clustered 5'-AUUUA-3' motifs.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q13825|AUHM_HUMAN Methylglutaconyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=AUH PE=1 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 113/155 (72%)

Query: 38  IYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
           + H   E  GIV L +NR   +N+L+  L++ +  AV+A++ D++VR +++RS V  +FC
Sbjct: 79  VRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFC 138

Query: 98  AGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
           AGADLK R  ++  ++  FVS +R +   + ++PVP +A +DG A GGGLE+ALACDIRV
Sbjct: 139 AGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRV 198

Query: 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           AAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LA
Sbjct: 199 AASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLA 233

Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Has very low enoyl-CoA hydratase activity. Was originally identified as RNA-binding protein that binds in vitro to clustered 5'-AUUUA-3' motifs.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|A4YI89|HPCD_METS5 3-hydroxypropionyl-coenzyme A dehydratase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2001 PE=1 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 1/138 (0%)

Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
           + +NRP   NALNA L+EE+  AV     D E+R +++    K  FCAGAD+     L  
Sbjct: 17  ITLNRPDKLNALNAKLLEELDRAVSQAESDPEIRVIIITGKGK-AFCAGADITQFNQLTP 75

Query: 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
            +   F    R +  ++E++  P +A+++G A GGGLE+ALACDIR+AA   ++GL E  
Sbjct: 76  AEAWKFSKKGREIMDKIEALSKPTIAMINGYALGGGLELALACDIRIAAEEAQLGLPEIN 135

Query: 171 LAIIPGAGGTQRLPRIVG 188
           L I PG GGTQRL R++G
Sbjct: 136 LGIYPGYGGTQRLTRVIG 153

Plays a role in autotrophic carbon fixation via the 3-hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl-CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crotonyl-CoA. Inactive towards (R)-3-hydroxybutyryl-CoA.

Metallosphaera sedula (strain ATCC 51363 / DSM 5348) (taxid: 399549)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 6

>sp|P52046|CRT_CLOAB 3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=crt PE=3 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 90/150 (60%), Gaps = 1/150 (0%)

Query: 44  ERPGIVEL-CMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
           E+ G V +  +NRP+A NALN+  ++E+   +  I  D EV  V+L    +  F AGAD+
Sbjct: 9   EKEGKVAVVTINRPKALNALNSDTLKEMDYVIGEIENDSEVLAVILTGAGEKSFVAGADI 68

Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
                +N  + R F      +  +LE +  PV+A ++G A GGG E+A++CDIR+A+SN 
Sbjct: 69  SEMKEMNTIEGRKFGILGNKVFRRLELLEKPVIAAVNGFALGGGCEIAMSCDIRIASSNA 128

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           R G  E  L I PG GGTQRL R+VG+ +A
Sbjct: 129 RFGQPEVGLGITPGFGGTQRLSRLVGMGMA 158

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 5

>sp|Q5QXH7|FADB_IDILO Fatty acid oxidation complex subunit alpha OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=fadB PE=3 SV=1

 Score =  106 bits (264), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 83/146 (56%), Gaps = 3/146 (2%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
            PG  EL  +   + N  +   +EE   A+  ++  +++R V++ S  K  F  GAD+  
Sbjct: 14  EPGFAELQFDAKGSVNKFDQATLEEFSEALTKLQNTDDLRGVIVTS-SKSTFIVGADITE 72

Query: 105 RLTLNEDQ--IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
            LTL  DQ   RS+V+    +  QLE +PVP +  + G A GGG E  LACD RVA +  
Sbjct: 73  FLTLFSDQEKTRSWVAKASRVFDQLEDLPVPTVGAVTGFALGGGCEALLACDYRVADTTA 132

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVG 188
            +GL E KL +IPG GGT RLPR++G
Sbjct: 133 TIGLPEVKLGLIPGFGGTMRLPRVIG 158

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) (taxid: 283942)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
312385583	306	hypothetical protein AND_00597 [Anophele	0.438	0.513	0.541	7e-43
157123477	307	methylglutaconyl-CoA hydratase, putative	0.469	0.547	0.511	8e-43
357593606	326	methylglutaconyl-CoA hydratase, mitochon	0.508	0.558	0.486	9e-43
158287201	246	AGAP011354-PA [Anopheles gambiae str. PE	0.435	0.634	0.544	2e-42
242017750	275	methylglutaconyl-CoA hydratase, putative	0.438	0.570	0.539	3e-42
147901755	322	AU RNA binding protein/enoyl-CoA hydrata	0.469	0.521	0.529	7e-42
224088651	258	PREDICTED: methylglutaconyl-CoA hydratas	0.407	0.565	0.582	9e-42
348503902	328	PREDICTED: methylglutaconyl-CoA hydratas	0.416	0.454	0.557	2e-41
170040764	294	methylglutaconyl-CoA hydratase, mitochon	0.424	0.517	0.546	2e-41
327263333	319	PREDICTED: methylglutaconyl-CoA hydratas	0.421	0.473	0.576	2e-41

>gi|312385583|gb|EFR30043.1| hypothetical protein AND_00597 [Anopheles darlingi]

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/157 (54%), Positives = 114/157 (72%)

Query: 36  QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDV 95
           Q+ Y    ++ GI  L +NRP+ARN+ + +LV ++L A++ +  D+ VR V+LRSLV  +
Sbjct: 44  QLTYLTEEDKQGIAVLGLNRPKARNSFSKSLVTQLLEAIDVLAHDKNVRVVILRSLVPGI 103

Query: 96  FCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
           FCAGADLK R T    ++  FVS LR M   +E +P PV+A +DG+A GGGLEMALACD+
Sbjct: 104 FCAGADLKERATFTPQEVSRFVSKLRQMMVNIEQMPTPVVAAIDGAALGGGLEMALACDM 163

Query: 156 RVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           RV A+N ++GLVETKL IIPGAGGTQRLPRI+   +A
Sbjct: 164 RVVATNAKLGLVETKLGIIPGAGGTQRLPRILNPAIA 200

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123477|ref|XP_001660163.1| methylglutaconyl-CoA hydratase, putative [Aedes aegypti] gi|108874393|gb|EAT38618.1| AAEL009501-PA [Aedes aegypti]

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 118/168 (70%)

Query: 25  TSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVR 84
           ++ +   R+  Q+ Y    ++ GI  L +NR +ARN+ + +LV+ IL ++E +  D+ VR
Sbjct: 34  STTNTNARQELQLTYLTEDDKQGIAVLGLNRAKARNSFSRSLVDHILESIEVLAHDKNVR 93

Query: 85  CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144
            V+LRSLV  +FCAGADLK R T+ +  +  FV+ LR M   +E +P PV+A +DG A G
Sbjct: 94  VVILRSLVPGIFCAGADLKERATMTQQDVGRFVTKLRLMMSNIEQLPAPVIAAIDGPALG 153

Query: 145 GGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           GGLEMALACD+RV  SNV++GLVETKL IIPGAGGTQRLPRI+   +A
Sbjct: 154 GGLEMALACDMRVVTSNVKLGLVETKLGIIPGAGGTQRLPRILNPAIA 201

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357593606|ref|NP_001239535.1| methylglutaconyl-CoA hydratase, mitochondrial isoform 1 [Gallus gallus]

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 126/183 (68%), Gaps = 1/183 (0%)

Query: 11  SPARVKVTKWPNYSTSVSKEGRKLTQI-IYHNSPERPGIVELCMNRPQARNALNATLVEE 69
           +P R     +P+   +   E ++  ++ + +   E  GIV L +NR  A+NALN  L++ 
Sbjct: 38  APVRGGAATFPSAGRNYGSEAKEEEELRVQYLDEEHKGIVVLGLNRSHAKNALNKNLLKM 97

Query: 70  ILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLES 129
           +  AV+A++ D++VR V+ RS V  +FCAGADLK R  ++  ++ SFVS  R    ++ +
Sbjct: 98  MSKAVDALKSDKKVRTVIFRSEVPGIFCAGADLKERAKMHSSEVGSFVSKARATINEMAN 157

Query: 130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189
           +PVP +A +DG A GGGLE+ALACDIRVAAS+ +MGLVETKLAIIPGAGGTQRLPR +G+
Sbjct: 158 LPVPTIAAIDGIALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRAIGV 217

Query: 190 PLA 192
            LA
Sbjct: 218 SLA 220

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|158287201|ref|XP_309296.4| AGAP011354-PA [Anopheles gambiae str. PEST] gi|157019537|gb|EAA05238.4| AGAP011354-PA [Anopheles gambiae str. PEST]

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 112/156 (71%)

Query: 37  IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
           + Y    ++ GI  L +NRP+ARN+ + +LV  +L A+E +  D+ VR V+LRSLV  +F
Sbjct: 49  LTYLTEEDKQGIAVLGLNRPKARNSFSKSLVHHLLDAIEVLAHDKNVRVVILRSLVPGIF 108

Query: 97  CAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
           CAGADLK R T    ++  FVS LR M   +E +P PV+A +DG+A GGGLEMALACD+R
Sbjct: 109 CAGADLKERATFTPQEVSRFVSKLRQMMVNIEQMPTPVVAAIDGAALGGGLEMALACDMR 168

Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           V A+N ++GLVETKL IIPGAGGTQRLPRI+   +A
Sbjct: 169 VVATNAKLGLVETKLGIIPGAGGTQRLPRILNPAVA 204

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017750|ref|XP_002429350.1| methylglutaconyl-CoA hydratase, putative [Pediculus humanus corporis] gi|212514253|gb|EEB16612.1| methylglutaconyl-CoA hydratase, putative [Pediculus humanus corporis]

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/163 (53%), Positives = 115/163 (70%), Gaps = 6/163 (3%)

Query: 32  RKLTQIIYHN------SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRC 85
           R  ++++  N        E  GIVEL +NR   +N+ N +LV  +  A++ I+ D++VR 
Sbjct: 17  RNFSKVLEENLKIKYLDKEHKGIVELGLNRHSGKNSFNRSLVNSLSQAIKNIKYDKDVRV 76

Query: 86  VLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGG 145
           V+ RSLV  VFCAGADLK R  L+  ++R FVS LR M   +E++ VPV+A LDG A GG
Sbjct: 77  VIFRSLVPKVFCAGADLKERAELSPIEVRHFVSDLRAMLTDIENLEVPVIAALDGVALGG 136

Query: 146 GLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           GLE+ALACDIR A+ N +MGLVETKLAIIPGAGGTQRLPR++G
Sbjct: 137 GLELALACDIRTASENAKMGLVETKLAIIPGAGGTQRLPRLIG 179

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|147901755|ref|NP_001089522.1| AU RNA binding protein/enoyl-CoA hydratase [Xenopus laevis] gi|66910817|gb|AAH97787.1| MGC115495 protein [Xenopus laevis]

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 125/170 (73%), Gaps = 2/170 (1%)

Query: 23  YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEE 82
           Y++S  K G    ++ Y    E+ GIV L +NRPQA+NA++ +LV+ ++  +++++G+ +
Sbjct: 49  YNSSAEK-GEDELRVRYLEGDEQ-GIVVLGINRPQAKNAISKSLVKSMMKMIDSLKGNNK 106

Query: 83  VRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142
           VR V+LRS V  VFCAGADLK R  ++  ++  FVS  R +  +  ++P+P +A LDG+A
Sbjct: 107 VRTVVLRSEVPGVFCAGADLKERAKMHPSEVGPFVSRARALMNEFANLPMPTIAALDGAA 166

Query: 143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            GGGLEMALACDI VAAS+ +MGLVETKLAIIPGAGGTQRLPR VG+ LA
Sbjct: 167 LGGGLEMALACDIIVAASSAKMGLVETKLAIIPGAGGTQRLPRAVGVALA 216

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224088651|ref|XP_002189897.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Taeniopygia guttata]

 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 85/146 (58%), Positives = 112/146 (76%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GIV L +NR  A+NAL+  LV+ +  AV+A++ D++VR V+ RS V  +FCAGADLK R 
Sbjct: 7   GIVVLGLNRSHAKNALSKNLVKMMSKAVDALKSDKKVRTVVFRSEVPGIFCAGADLKERA 66

Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
            ++  ++ SFVS  R    +L ++PVP +A +DG+A GGGLE+ALACDIRVAAS+ +MGL
Sbjct: 67  KMHSSEVSSFVSRARATINELANLPVPTIAAIDGTALGGGLELALACDIRVAASSAKMGL 126

Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
           VETKLAIIPGAGGTQRLPR +G+ LA
Sbjct: 127 VETKLAIIPGAGGTQRLPRTIGVSLA 152

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348503902|ref|XP_003439501.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial-like [Oreochromis niloticus]

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 116/149 (77%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
           E  GIV + +NRP+A+NA++  LV+ +  AVE I+ +++VR V+L SLV  +FCAGADLK
Sbjct: 74  EDSGIVVVGINRPKAKNAISKNLVKMMFEAVEDIKKNKKVRSVILCSLVPGIFCAGADLK 133

Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
            R  +++ ++  FVS  R +  +L S+PVP +A +DG+A GGGLEMALACDIR++++  +
Sbjct: 134 ERAKMHQSEVGPFVSKARALITELGSLPVPTIAAIDGAALGGGLEMALACDIRISSNTAK 193

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           MGLVETKLAIIPGAGGTQRLPR++G+ LA
Sbjct: 194 MGLVETKLAIIPGAGGTQRLPRVIGVSLA 222

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170040764|ref|XP_001848158.1| methylglutaconyl-CoA hydratase, mitochondrial [Culex quinquefasciatus] gi|167864369|gb|EDS27752.1| methylglutaconyl-CoA hydratase, mitochondrial [Culex quinquefasciatus]

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/152 (54%), Positives = 111/152 (73%)

Query: 36  QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDV 95
           Q+ Y    ++ GI  L +NR +ARN+ + +LV ++L +++ +  D+ VR V+LRSLV  +
Sbjct: 32  QLTYLTEGDKQGIAVLGLNRAKARNSFSKSLVNQMLDSIDVLAHDKNVRVVILRSLVPGI 91

Query: 96  FCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
           FCAGADLK R T++   +  FVS LR M   +E +P PV+A +DG A GGGLEMALACD+
Sbjct: 92  FCAGADLKERATMSPQDVGRFVSKLRQMMSSIEQLPAPVIAAIDGPALGGGLEMALACDM 151

Query: 156 RVAASNVRMGLVETKLAIIPGAGGTQRLPRIV 187
           RV A NV++GLVETKL IIPGAGGTQRLPRI+
Sbjct: 152 RVVAGNVKLGLVETKLGIIPGAGGTQRLPRIL 183

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327263333|ref|XP_003216474.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial-like [Anolis carolinensis]

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/151 (57%), Positives = 112/151 (74%)

Query: 42  SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD 101
           S E  GIV L +NR  A+NALN  +V+ I   +EA++ D++VR V+ RS V  VFCAGAD
Sbjct: 63  SSEAKGIVVLGLNREHAKNALNKHVVKMISKVMEALKTDKKVRTVIFRSEVPGVFCAGAD 122

Query: 102 LKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
           LK R  ++  ++ SFVS  R    ++ ++PVP +A +DG A GGGLE+ALACDIRVAA++
Sbjct: 123 LKERAKMHSSEVSSFVSKARATINEIANLPVPTIAAIDGIALGGGLELALACDIRVAATS 182

Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            +MGLVETKLAIIPGAGGTQRLPR VG+ LA
Sbjct: 183 AKMGLVETKLAIIPGAGGTQRLPRTVGVSLA 213

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
UNIPROTKB|J9P2R5	340	AUH "Uncharacterized protein"	0.466	0.491	0.505	8.7e-40
ZFIN|ZDB-GENE-040801-95	325	auh "AU RNA binding protein/en	0.466	0.513	0.505	8.7e-40
MGI|MGI:1338011	314	Auh "AU RNA binding protein/en	0.505	0.576	0.489	1.1e-39
RGD|1306087	313	Auh "AU RNA binding protein/en	0.466	0.533	0.5	3.7e-39
UNIPROTKB|Q13825	339	AUH "Methylglutaconyl-CoA hydr	0.432	0.457	0.516	4.8e-39
MGI|MGI:1289238	296	Echdc2 "enoyl Coenzyme A hydra	0.407	0.493	0.541	7.8e-39
UNIPROTKB|Q2TBT3	296	ECHDC2 "Enoyl-CoA hydratase do	0.466	0.564	0.491	3.4e-38
UNIPROTKB|F1NSS6	253	ECHDC2 "Uncharacterized protei	0.405	0.573	0.537	5.5e-38
UNIPROTKB|Q86YB7	292	ECHDC2 "Enoyl-CoA hydratase do	0.416	0.510	0.533	2.4e-37
UNIPROTKB|F1S750	252	ECHDC2 "Uncharacterized protei	0.407	0.579	0.534	3.9e-37

UNIPROTKB|J9P2R5 AUH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 86/170 (50%), Positives = 121/170 (71%)

Query:    23 YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEE 82
             YS+ V  E     ++ Y     R GIV L +NR  A+N  + +LV+ +  AV+A++ D++
Sbjct:    68 YSSEVKTEDE--LRVRYLEEENR-GIVVLGINRAYAKNTFSKSLVKMLSKAVDALKSDKK 124

Query:    83 VRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142
             VR +++RS V  +FCAGADLK R+ +N  ++  FVS +R +  ++ ++PVP +A +DG A
Sbjct:   125 VRTIIVRSEVPGIFCAGADLKERVKMNPSEVGPFVSKIRAVIDEIANLPVPTIAAIDGLA 184

Query:   143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
              GGGLE+ALACDIRVAAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LA
Sbjct:   185 LGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLA 234

GO:0003824 "catalytic activity" evidence=IEA

ZFIN|ZDB-GENE-040801-95 auh "AU RNA binding protein/enoyl-Coenzyme A hydratase" [Danio rerio (taxid:7955)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 86/170 (50%), Positives = 123/170 (72%)

Query:    23 YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEE 82
             YS+ V+  G  L  I+ +   +  GIV + +NRP+A+NA++  LV  +  A+E+++ D  
Sbjct:    53 YSSEVNS-GDDL--IVRYLDGDDSGIVVMGINRPEAKNAISKNLVSMMSEALESMKTDNT 109

Query:    83 VRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142
             VR V+L S+V  +FCAGADLK R  + + ++  FV+  R +  +L ++P+P +A +DG+A
Sbjct:   110 VRTVILCSMVPGIFCAGADLKERAKMQQSEVGPFVTKARTLISELGALPMPTIAAIDGAA 169

Query:   143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
              GGGLEMALACDIRVAA++ +MGLVETKLAIIPGAGGTQRLPR VG+ +A
Sbjct:   170 LGGGLEMALACDIRVAANSAKMGLVETKLAIIPGAGGTQRLPRTVGVSIA 219

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

MGI|MGI:1338011 Auh "AU RNA binding protein/enoyl-coenzyme A hydratase" [Mus musculus (taxid:10090)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 91/186 (48%), Positives = 125/186 (67%)

Query:     9 RLSPARVKVTKWPN--YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATL 66
             RL PA       P   YS+ V  E  +L   + H   E  GIV L +NR   +NAL+  L
Sbjct:    26 RLGPAAWARGTAPRRGYSSEVKTED-ELR--VRHLEEENRGIVVLGINRAYGKNALSKNL 82

Query:    67 VEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126
             ++ +  AV+A++ D++VR +++RS V  +FCAGADLK R  ++  ++  FVS +R +   
Sbjct:    83 LKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVIND 142

Query:   127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRI 186
             + ++PVP +A +DG A GGGLE+ALACDIRVAAS+ +MGLVETKLAIIPG GGTQRLPR 
Sbjct:   143 IANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRA 202

Query:   187 VGIPLA 192
             +G+ LA
Sbjct:   203 IGMSLA 208

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0003723 "RNA binding" evidence=IDA

GO:0003730 "mRNA 3'-UTR binding" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISO;IDA

GO:0004490 "methylglutaconyl-CoA hydratase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IDA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

RGD|1306087 Auh "AU RNA binding protein/enoyl-CoA hydratase" [Rattus norvegicus (taxid:10116)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 85/170 (50%), Positives = 120/170 (70%)

Query:    23 YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEE 82
             YS+ V  E  +L   + H   E  GIV L +NR   +N+L+  L++ +  AV+A++ D++
Sbjct:    41 YSSEVKTED-ELR--VRHLEEENRGIVVLGINRAYGKNSLSKNLLKMLSKAVDALKSDKK 97

Query:    83 VRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142
             VR +++RS V  +FCAGADLK R  ++  ++  FVS +R +   + ++PVP +A +DG A
Sbjct:    98 VRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLA 157

Query:   143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
              GGGLE+ALACDIRVAAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LA
Sbjct:   158 LGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMALA 207

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=ISO

GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA;ISO

GO:0004490 "methylglutaconyl-CoA hydratase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0006402 "mRNA catabolic process" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=ISO

UNIPROTKB|Q13825 AUH "Methylglutaconyl-CoA hydratase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 80/155 (51%), Positives = 113/155 (72%)

Query:    38 IYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
             + H   E  GIV L +NR   +N+L+  L++ +  AV+A++ D++VR +++RS V  +FC
Sbjct:    79 VRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFC 138

Query:    98 AGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
             AGADLK R  ++  ++  FVS +R +   + ++PVP +A +DG A GGGLE+ALACDIRV
Sbjct:   139 AGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRV 198

Query:   158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
             AAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LA
Sbjct:   199 AASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLA 233

GO:0006552 "leucine catabolic process" evidence=IEA

GO:0003730 "mRNA 3'-UTR binding" evidence=IDA

GO:0006402 "mRNA catabolic process" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS

GO:0004490 "methylglutaconyl-CoA hydratase activity" evidence=EXP

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:1289238 Echdc2 "enoyl Coenzyme A hydratase domain containing 2" [Mus musculus (taxid:10090)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 79/146 (54%), Positives = 107/146 (73%)

Query:    47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
             GI E+ MNRP ARNAL    V E+L A+  +R D++VR +L RS VK VFCAGADLK R 
Sbjct:    45 GITEILMNRPNARNALGNVFVSELLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKERE 104

Query:   107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
              +++ ++ +FV  LR +  ++ + PVP +A +DG A GGGLE+ALACD+R+AAS+  MGL
Sbjct:   105 QMSDVEVGTFVQRLRGLMSEIAAFPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGL 164

Query:   167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
             +ET   ++PGAGGTQRLPR +G+ LA
Sbjct:   165 IETTRGLLPGAGGTQRLPRCLGVALA 190

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|Q2TBT3 ECHDC2 "Enoyl-CoA hydratase domain-containing protein 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 83/169 (49%), Positives = 115/169 (68%)

Query:    24 STSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEV 83
             S++    GR++ Q+     P + GI E+ MNRP ARNAL    V ++L A+  +R D +V
Sbjct:    24 SSNPGAAGREI-QVCALAGPNQ-GIAEILMNRPSARNALGNVFVSQLLEALAQLREDRQV 81

Query:    84 RCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143
             R ++ RS VK VFCAGADLK R  ++E ++  FV  LR +  ++ + P P +A +DG A 
Sbjct:    82 RVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLRGLMTEIAAFPAPTIAAMDGFAL 141

Query:   144 GGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
             GGGLE+ALACD+RVAAS+  MGL+ET   ++PGAGGTQRLPR +G+ LA
Sbjct:   142 GGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALA 190

GO:0005739 "mitochondrion" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

UNIPROTKB|F1NSS6 ECHDC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 79/147 (53%), Positives = 109/147 (74%)

Query:    48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA--GADLKHR 105
             I E+ MNRP ARN+L    V+E+ +A+E +R DE+VR V+ +S VK VFCA  GADLK R
Sbjct:     1 IAEILMNRPHARNSLGKVFVDELFSALEQLRFDEKVRVVVFKSKVKGVFCADLGADLKER 60

Query:   106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
               +++ ++  FV  LR +  ++ ++PVP +A +DG A GGGLE+ALACD+RVAAS+ +MG
Sbjct:    61 EKMDDAEVGHFVKRLRNLMDEIAALPVPTIAAIDGYALGGGLELALACDLRVAASSAKMG 120

Query:   166 LVETKLAIIPGAGGTQRLPRIVGIPLA 192
             L+ET   ++PGAGGTQRLPR VG+ LA
Sbjct:   121 LIETTRGLLPGAGGTQRLPRCVGVGLA 147

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q86YB7 ECHDC2 "Enoyl-CoA hydratase domain-containing protein 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 80/150 (53%), Positives = 105/150 (70%)

Query:    43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
             P++ GI E+ MNRP ARNAL    V E+L  +  +R D +VR +L RS VK VFCAGADL
Sbjct:    38 PDQ-GITEILMNRPSARNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADL 96

Query:   103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
             K R  ++E ++  FV  LR +   + + P P +A +DG A GGGLE+ALACD+RVAAS+ 
Sbjct:    97 KEREQMSEAEVGVFVQRLRGLMNDIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSA 156

Query:   163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
              MGL+ET   ++PGAGGTQRLPR +G+ LA
Sbjct:   157 VMGLIETTRGLLPGAGGTQRLPRCLGVALA 186

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1S750 ECHDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 78/146 (53%), Positives = 103/146 (70%)

Query:    47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
             GI E+ MNRP ARNAL    V ++L A+  +R D  VR ++ RS VK VFCAGADLK R 
Sbjct:     1 GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 60

Query:   107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
              ++E ++  FV  LR +  ++ + P P +A +DG A GGGLE+ALACD+RVAAS+  MGL
Sbjct:    61 QMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGL 120

Query:   167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
             +ET   ++PGAGGTQRLPR +G+ LA
Sbjct:   121 IETTRGLLPGAGGTQRLPRCLGVALA 146

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3TLP5	ECHD2_MOUSE	No assigned EC number	0.5410	0.4078	0.4932	yes	N/A
Q86YB7	ECHD2_HUMAN	No assigned EC number	0.5410	0.4078	0.5	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	358
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	2e-55
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	6e-54
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	2e-49
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	3e-44
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	3e-43
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	2e-35
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	3e-35
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	1e-33
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	2e-32
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	2e-30
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	7e-30
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	1e-29
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	4e-29
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	4e-29
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	4e-29
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	5e-29
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	1e-28
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	2e-25
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	6e-24
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	8e-24
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	3e-23
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	3e-23
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	1e-22
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	4e-22
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	9e-22
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	1e-21
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	1e-21
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	1e-20
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	1e-20
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	1e-20
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	2e-20
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	2e-20
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	6e-20
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	1e-19
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	1e-19
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	5e-19
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	6e-19
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	1e-18
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	1e-18
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	2e-18
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	5e-18
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	9e-18
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	1e-17
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	2e-17
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	3e-17
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	4e-17
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	8e-17
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	1e-16
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	2e-16
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	7e-16
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	9e-16
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	1e-15
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	3e-15
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	5e-15
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	5e-15
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	7e-15
PRK08788	287	PRK08788, PRK08788, enoyl-CoA hydratase; Validated	3e-14
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	4e-14
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	1e-13
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	1e-13
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	1e-12
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	3e-11
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	2e-10
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	2e-10
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	3e-10
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	5e-10
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	9e-10
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	1e-09
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	3e-09
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	3e-08
TIGR03222	546	TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya	3e-08
PRK08184	550	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase;	5e-08
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	7e-08
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	2e-07
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	3e-07
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	3e-07
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	4e-07
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	6e-06
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	9e-06
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	4e-05
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	1e-04
PLN02267	239	PLN02267, PLN02267, enoyl-CoA hydratase/isomerase	0.002

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score =  181 bits (462), Expect = 2e-55
 Identities = 73/144 (50%), Positives = 101/144 (70%)

Query: 46  PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
           P +V++ +NRP+A NAL+  L+EE+   +  I  +  VR V+L    +  FCAGADLK R
Sbjct: 12  PHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKER 71

Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
             +NE+Q+R  VS +R     +E +P PV+A ++G A GGGLE+ALACD R+AA +  +G
Sbjct: 72  AGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLG 131

Query: 166 LVETKLAIIPGAGGTQRLPRIVGI 189
           L ET LAIIPGAGGTQRLPR++G+
Sbjct: 132 LTETTLAIIPGAGGTQRLPRLIGV 155

Length = 260

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score =  177 bits (451), Expect = 6e-54
 Identities = 72/142 (50%), Positives = 102/142 (71%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GIVEL ++RP+A+NA+   ++  + +A E I+ D   R V+LRS V  VFCAGADLK R 
Sbjct: 4   GIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERR 63

Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
            ++  +++ FV++LR     LE++ +P +AV++G+A GGGLE+AL+CD+R+       GL
Sbjct: 64  KMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGL 123

Query: 167 VETKLAIIPGAGGTQRLPRIVG 188
            ET LAIIPGAGGTQRLPR+VG
Sbjct: 124 PETGLAIIPGAGGTQRLPRLVG 145

Length = 251

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  163 bits (416), Expect = 2e-49
 Identities = 66/151 (43%), Positives = 98/151 (64%), Gaps = 3/151 (1%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
              G+  + +NRP+ RNAL+  +++E+  A++    D +VR V+L       FCAGADLK
Sbjct: 5   RDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTG-AGKAFCAGADLK 63

Query: 104 --HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
               L+   ++ R+F+  L+ +   L  +P PV+A ++G+A GGGLE+ALACDIR+AA +
Sbjct: 64  ELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED 123

Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            + GL E KL ++PG GGTQRLPR+VG   A
Sbjct: 124 AKFGLPEVKLGLVPGGGGTQRLPRLVGPARA 154

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score =  152 bits (386), Expect = 3e-44
 Identities = 66/146 (45%), Positives = 93/146 (63%), Gaps = 1/146 (0%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G+  + ++RP+A NAL+A L+ E++ A+E +  D  V+ ++L       F AGAD+K   
Sbjct: 7   GVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGG-PGAFSAGADIKEMA 65

Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
                Q   F    + +  +LE +P PV+A ++G A GGGLE+ALACD R+AA N + GL
Sbjct: 66  AEPLAQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGL 125

Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
            E KL IIPGAGGTQRLPRI+G+  A
Sbjct: 126 PEVKLGIIPGAGGTQRLPRIIGVSAA 151

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  150 bits (380), Expect = 3e-43
 Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 4/163 (2%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
              GI  + +NRP+  NALN  +++E+  A++    D +VR V+L       F AGADLK
Sbjct: 11  REDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTG-AGKAFSAGADLK 69

Query: 104 HRLTLNEDQI-RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
             L+  +     + +   + +   L  +P PV+A ++G A GGGLE+ALACDIR+AA + 
Sbjct: 70  ELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDA 129

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMS 205
           + GL E  L ++PG GGTQRLPR++G   A   E LL  + +S
Sbjct: 130 KFGLPEVNLGLLPGDGGTQRLPRLLGRGRA--KELLLTGEPIS 170

Length = 257

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  136 bits (345), Expect = 2e-35
 Identities = 57/146 (39%), Positives = 88/146 (60%), Gaps = 4/146 (2%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI EL  + P + N L+   +  +  A++A+    +++ +LL S  KD F  GAD+   L
Sbjct: 16  GIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTS-AKDAFIVGADITEFL 74

Query: 107 TL---NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
           +L    E+++  ++     +  +LE +PVP +A ++G A GGG E  LA D RVA+ + R
Sbjct: 75  SLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDAR 134

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGI 189
           +GL ETKL I+PG GGT RLPR++G 
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRLIGA 160

Length = 715

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  129 bits (326), Expect = 3e-35
 Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 8/150 (5%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
           G++ + +NRP  +NAL A + + +  A+EA   D  VR V+L    +  F AG D+K   
Sbjct: 14  GVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGR-AFSAGGDIKDFP 72

Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
                  D++      LR     + ++P PV+A ++G A G G+ +ALACD+  A+ + +
Sbjct: 73  KAPPKPPDELAPVNRFLR----AIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAK 128

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
             L   KL + P AGG+  LPR++G   AA
Sbjct: 129 FSLPFAKLGLCPDAGGSALLPRLIGRARAA 158

Length = 259

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score =  124 bits (314), Expect = 1e-33
 Identities = 60/146 (41%), Positives = 88/146 (60%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
            I  + +NRP+A NALN+  ++E+ T ++ I  D+ V  V+L    +  F AGAD+    
Sbjct: 13  HIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMK 72

Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
            LNE++ R F      +  +LE++  PV+A ++G A GGG E+++ACDIR+A+   + G 
Sbjct: 73  DLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQ 132

Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
            E  L I PG GGTQRL RIVG   A
Sbjct: 133 PEVGLGITPGFGGTQRLARIVGPGKA 158

Length = 260

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score =  121 bits (306), Expect = 2e-32
 Identities = 61/150 (40%), Positives = 85/150 (56%), Gaps = 11/150 (7%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
            ++ L +NRP+ARNALN  L+ +++  +EA   D  +   ++    +  F AGADL    
Sbjct: 11  RVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNAR-FFAAGADL---- 65

Query: 107 TLNEDQIRSFVSTL---RYMTCQ-LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
             NE   +   +TL   R    Q L++   P++A ++G A G G E+AL CDI +A  N 
Sbjct: 66  --NEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENA 123

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           R GL E  L I+PGAGGTQRL R VG  LA
Sbjct: 124 RFGLPEITLGIMPGAGGTQRLIRSVGKSLA 153

Length = 255

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score =  116 bits (293), Expect = 2e-30
 Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 5/149 (3%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
              +  L +NRP+ARNAL+A L   +  A+     D++V  V+L       FCAG DLK 
Sbjct: 11  HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTG-ADPAFCAGLDLKE 69

Query: 105 RLTLNEDQIRSFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
              L  D         L   +    ++  PV+  ++G+A  GGLE+ALACDI +A+   R
Sbjct: 70  ---LGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERAR 126

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
                 ++ I+PG G + RLP+ VGI  A
Sbjct: 127 FADTHARVGILPGWGLSVRLPQKVGIGRA 155

Length = 258

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score =  114 bits (288), Expect = 7e-30
 Identities = 60/149 (40%), Positives = 85/149 (57%), Gaps = 9/149 (6%)

Query: 44  ERP--GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD 101
           ERP  G+  L +NRP+ARNALN  + +++      +  D ++R ++L    + VF AGAD
Sbjct: 12  ERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG-GEKVFAAGAD 70

Query: 102 LKHRLTLN--EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
           +K   T    E  +R    T RY    +   P PV+A ++G A GGG E+A+  DI VA 
Sbjct: 71  IKEFATAGAIEMYLRH---TERYWE-AIAQCPKPVIAAVNGYALGGGCELAMHADIIVAG 126

Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
            +   G  E K+ ++PGAGGTQRL R VG
Sbjct: 127 ESASFGQPEIKVGLMPGAGGTQRLVRAVG 155

Length = 261

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score =  114 bits (287), Expect = 1e-29
 Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 3/148 (2%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
            +  + +N P A NAL++ ++ E+   ++ +  D+ VR V++    +  F AGAD+K   
Sbjct: 11  HVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGR-FFSAGADIKEFT 68

Query: 107 TLNE-DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
           ++ E +Q        +    ++E    PV+A + G+A GGGLE+A++C IR A  + ++G
Sbjct: 69  SVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLG 128

Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAA 193
           L E  L +IPG  GTQRLPR VG   A 
Sbjct: 129 LPELNLGLIPGFAGTQRLPRYVGKAKAL 156

Length = 257

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score =  113 bits (284), Expect = 4e-29
 Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 44  ERPG-IVELCMNRPQARNALNA-TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD 101
           ER G IV L MNRP+ RNAL+    V+ ++ A  AI  D  VR V+L       F +G +
Sbjct: 8   ERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGT-AFSSGGN 66

Query: 102 LKH------RLTLNEDQIR-SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
           +K           +   IR  +   ++ +   L ++ VPV+A ++G A G G ++A  CD
Sbjct: 67  VKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCD 126

Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
           IR+A+   R      KL +IPG GG   LPRI+G+  AA
Sbjct: 127 IRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAA 165

Length = 266

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  118 bits (297), Expect = 4e-29
 Identities = 49/138 (35%), Positives = 81/138 (58%), Gaps = 4/138 (2%)

Query: 60  NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-NEDQIRSFVS 118
           N L A   E++   ++ +R D+E++ V+  S   D F AGAD+          +  +   
Sbjct: 29  NTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALAR 88

Query: 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPG 176
             + +  ++E++P+PV+A + G+  GGGLE+ALAC  RV   +    +GL E +L ++PG
Sbjct: 89  QGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPG 148

Query: 177 AGGTQRLPRIVGIPLAAL 194
           +GGTQRLPR++G+   AL
Sbjct: 149 SGGTQRLPRLIGV-STAL 165

Length = 708

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  118 bits (296), Expect = 4e-29
 Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 4/145 (2%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI EL  + P + N  +   +  +  A++AI+    ++ V+L S  KD F  GAD+   L
Sbjct: 16  GIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTS-GKDAFIVGADITEFL 74

Query: 107 TL---NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
            L    + ++  ++     +  +LE +PVP +A ++G A GGG E  LA D R+A    +
Sbjct: 75  GLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAK 134

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVG 188
           +GL ETKL I+PG GGT RLPR++G
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRVIG 159

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score =  112 bits (282), Expect = 5e-29
 Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 8/167 (4%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           R GI  L +NRP+  NALN  L++ +L  ++AI  DE VR V+L       F AGAD+ H
Sbjct: 10  RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADI-H 68

Query: 105 RLTLN-----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
             + +     +  +R FV   + MT +LE+ P PV+A ++G A+GGG E+  A  + +A+
Sbjct: 69  EFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIAS 128

Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSS 206
                   E +L + P  GGTQRLPR+ G   A   E LL  D  S+
Sbjct: 129 ERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRA--LELLLTGDAFSA 173

Length = 260

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score =  111 bits (279), Expect = 1e-28
 Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 13/148 (8%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           R G++ L  NRP+A NALN  L++E+  A+ A   DE +  +++    K  F AGAD+K 
Sbjct: 13  RVGLITL--NRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEK-AFAAGADIK- 68

Query: 105 RLTLNEDQIRSFVSTLR--YMTC--QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
                E    SF+   +  Y+T   ++  I  PV+A + G A GGG E+A+ CDI +AA 
Sbjct: 69  -----EMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAAD 123

Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVG 188
             + G  E KL ++PG GG+QRL R VG
Sbjct: 124 TAKFGQPEIKLGVLPGMGGSQRLTRAVG 151

Length = 257

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score =  103 bits (258), Expect = 2e-25
 Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 14/156 (8%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI ++ +NRP   NAL+  + EE++  ++ ++ D  +R V+L S     FCAG D+K   
Sbjct: 12  GIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVIL-SGEGGAFCAGLDVK--- 67

Query: 107 TLNEDQIRSFV----------STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
           ++      +            +  + ++     +PVPV+A L+G  +GGGL++AL  DIR
Sbjct: 68  SVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIR 127

Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           +AA + ++ ++E K  ++P   GT  L  +V   +A
Sbjct: 128 IAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVA 163

Length = 262

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 98.6 bits (246), Expect = 6e-24
 Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---K 103
           G+  L +NRP+  NAL+A ++ E+ TA   +  D  VR V+L    K  FCAG DL   +
Sbjct: 14  GVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKS-FCAGGDLGWMR 72

Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
            ++T +          L  M   L  +P P++  + G A+GGG+ +   CD+ +A S  R
Sbjct: 73  AQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGAR 132

Query: 164 MGLVETKLAIIP 175
            GL ET+L +IP
Sbjct: 133 FGLTETRLGLIP 144

Length = 262

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 98.5 bits (246), Expect = 8e-24
 Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 4/134 (2%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL-- 102
           R  +  + +NRP  RNA N T++ E+  A  A+  D+ VR V+L    K  FCAGADL  
Sbjct: 11  RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGK-AFCAGADLNW 69

Query: 103 -KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
            K     ++D+ R+    L  M   +   P PV+A + G AY GG+ +  ACDI VAA +
Sbjct: 70  MKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH 129

Query: 162 VRMGLVETKLAIIP 175
               L E +L +IP
Sbjct: 130 AVFCLSEVRLGLIP 143

Length = 262

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  100 bits (251), Expect = 3e-23
 Identities = 51/150 (34%), Positives = 88/150 (58%), Gaps = 4/150 (2%)

Query: 47  GIVELCMNRPQAR-NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
           GI  L ++ P  + N L A   +++   +  ++ D+ +R ++L S   D F AGAD+   
Sbjct: 10  GIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISML 69

Query: 106 LTL-NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--V 162
                  + ++     + +  +LE++P+PV+A + G+  GGGLE+ALAC  RV + +   
Sbjct: 70  AACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKT 129

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            +GL E +L ++PG+GGTQRLPR++G+  A
Sbjct: 130 VLGLPEVQLGLLPGSGGTQRLPRLIGVSTA 159

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 96.6 bits (241), Expect = 3e-23
 Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 1/143 (0%)

Query: 46  PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
            G+  L +    + N L   ++  +  A+  +  D +VR ++LR   +  F  GAD+K  
Sbjct: 15  RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEM 74

Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
            TL++    +F+S LR +   +   PVPV+A + G   GGGLE+A ACD+R+AA + + G
Sbjct: 75  ATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFG 134

Query: 166 LVETKLAIIPGAGGTQRLPRIVG 188
           + E ++  IP       LPR++G
Sbjct: 135 MPEVRVG-IPSVIHAALLPRLIG 156

Length = 256

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 95.5 bits (238), Expect = 1e-22
 Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 44  ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
           ER G +  + +NRP+  NAL+     E+    +    D E    ++       F AG DL
Sbjct: 9   ERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDL 68

Query: 103 KHRLTLNEDQI--RSFVS-TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
           K +    +       F   T R+   +      P++A ++G A GGG E+ALACD+ VAA
Sbjct: 69  KEQAAGGKRGWPESGFGGLTSRFDLDK------PIIAAVNGVAMGGGFELALACDLIVAA 122

Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            N    L E ++ +   AGG  RLPR +G+  A
Sbjct: 123 ENATFALPEPRVGLAALAGGLHRLPRQIGLKRA 155

Length = 259

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 93.5 bits (233), Expect = 4e-22
 Identities = 53/145 (36%), Positives = 74/145 (51%), Gaps = 9/145 (6%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-HR 105
           G+  + +NRP  RNALN  L+  +  A   +   E VR V+L     D FCAG DL   R
Sbjct: 11  GVATIGLNRPAKRNALNDGLIAALRAAFARL--PEGVRAVVLHG-EGDHFCAGLDLSELR 67

Query: 106 LTLNEDQIRSFVSTLRYMTC--QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
                D       + R+     +++   VPV+A L G+  GGGLE+A A  IRVA  +  
Sbjct: 68  ---ERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTY 124

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVG 188
             L E +  I  G GG+ R+PR++G
Sbjct: 125 FALPEGQRGIFVGGGGSVRVPRLIG 149

Length = 255

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 92.3 bits (230), Expect = 9e-22
 Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 6/155 (3%)

Query: 46  PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
            GI ++ M     +NA +  L +++  A + I  D   + V+L     + F  G   +  
Sbjct: 13  EGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGL 71

Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
           L+L +    +F     Y +  L   P+PV+A + G A GGGL + L  DI V +      
Sbjct: 72  LSL-QTGKGTFTEANLY-SLALN-CPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYT 128

Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN 200
               K    PG G T  LP  +G+ L    E LL 
Sbjct: 129 ANFMKYGFTPGMGATAILPEKLGLALGQ--EMLLT 161

Length = 249

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 92.4 bits (230), Expect = 1e-21
 Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 7/114 (6%)

Query: 46  PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
             ++ + + RP+ RNALNA L EE+  AV     DE  R ++L      VFCAGADL   
Sbjct: 8   GQVLTIELQRPERRNALNAELCEELREAVRKA-VDESARAIVLTG-QGTVFCAGADLSGD 65

Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
           +  ++     F   L  M   +++ PVPV+A ++G A G GL++A+ACD+RV A
Sbjct: 66  VYADD-----FPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVA 114

Length = 243

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 28/168 (16%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
           GI  + +NRP   NA   T+  E++ A +A   D+ VR V++    +  FCAGADL    
Sbjct: 13  GIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGR-AFCAGADLSAGG 71

Query: 104 HRLTLNEDQIRSFVS-------------------TLRYMTCQLESIPVPVLAVLDGSAYG 144
           +   L+  +                         TLR           PV+A ++G A G
Sbjct: 72  NTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDS-----LKPVIAAVNGPAVG 126

Query: 145 GGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            G  M LA DIR+A++  R G V  +  I+P A  +  LPR+VG+  A
Sbjct: 127 VGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTA 174

Length = 296

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 36  QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KD 94
           Q +   +  +   +    N P  RNAL+  L+++++ A+  +    E+R V+LR+     
Sbjct: 4   QYVNVVTINKIATIT--FNNPAKRNALSKVLIDDLMQALSDLN-RPEIRVVILRAPSGSK 60

Query: 95  VFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
           V+ AG D+    +   D + S+   LR +   ++  P PV+A+++GS +GG  E+ ++CD
Sbjct: 61  VWSAGHDIHELPSGGRDPL-SYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCD 119

Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           + +AAS     +    L +     G        G  + 
Sbjct: 120 LIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIV 157

Length = 261

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 89.4 bits (222), Expect = 1e-20
 Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G+  + +N P  RNA+ A +  ++  AV A   D +V  +++    K  FCAGADL    
Sbjct: 12  GVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGK-AFCAGADLT--- 67

Query: 107 TLNEDQIRSFVSTLR--YMT-CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
            L     R     LR  Y     + S P+P +A ++G+A G GL +ALA D+R+A     
Sbjct: 68  ALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKAL 127

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAAL 194
                 KL + PG G T  L R VG P  A 
Sbjct: 128 FDARFQKLGLHPGGGATWMLQRAVG-PQVAR 157

Length = 249

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 89.6 bits (223), Expect = 1e-20
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 12/153 (7%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---- 102
            + ++ +NRP   NA+N     E+      +  D EVR V+L    K  F  G DL    
Sbjct: 15  HVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKH-FSYGIDLPAMA 73

Query: 103 -------KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
                  K  L      +R  +  L+     +     PV+A + G   GGG+++  ACD+
Sbjct: 74  GVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDM 133

Query: 156 RVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           R A+++ +  + E  L ++   G  QRLPRI+G
Sbjct: 134 RYASADAKFSVREVDLGMVADVGSLQRLPRIIG 166

Length = 272

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 17/130 (13%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           R GI  +  NRP ARNA+   + E +    EAI  D  +R V+LR      F AG D+  
Sbjct: 15  RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIA- 73

Query: 105 RLTLNEDQIRSFVS---TLRY------MTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
                  Q R+F +    + Y      +   LE + VP +A + G+  GGG  +A ACD+
Sbjct: 74  -------QFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDL 126

Query: 156 RVAASNVRMG 165
           R+A  + R G
Sbjct: 127 RIATPSARFG 136

Length = 262

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 88.5 bits (220), Expect = 2e-20
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 13/154 (8%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
            R  ++ + +NRP+ARNA+NA + + +  A++ +  D ++   +L       FCAG DLK
Sbjct: 9   RRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTG-AGGTFCAGMDLK 67

Query: 104 HRLTLNEDQI--RSFVSTLRYMTCQLESIPV--PVLAVLDGSAYGGGLEMALACDIRVAA 159
                    I  R F          L   P   P++A ++G A  GG E+ALACD+ VAA
Sbjct: 68  AFARGERPSIPGRGF--------GGLTERPPRKPLIAAVEGYALAGGFELALACDLIVAA 119

Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
            + + GL E K  ++   GG  RLPR +   +A 
Sbjct: 120 RDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAM 153

Length = 254

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 91.1 bits (226), Expect = 6e-20
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 17/179 (9%)

Query: 22  NYSTSVSKEGRKLTQIIYHNSPERPGIVELC-MNRPQAR-NALNATLVEEILTAVEAIRG 79
            +STS +   R       H   E  G V +  ++ P ++ N L+  L  E    +  +  
Sbjct: 2   LFSTSAALMART------HRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWT 55

Query: 80  DEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL----RYMTCQLESIPVPVL 135
           +E ++  +L S     F AGAD++    +   +    V+ L    + M  ++E    P++
Sbjct: 56  NEAIKSAVLISGKPGSFVAGADIQ---MIAACKTAQEVTQLSQEGQEMFERIEKSQKPIV 112

Query: 136 AVLDGSAYGGGLEMALACDIRVAA--SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           A + GS  GGGLE+ALAC  R+A       +GL E  L ++PGAGGTQRLP++ G+P A
Sbjct: 113 AAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAA 171

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 9/142 (6%)

Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
           L +N P A N   A  ++ +   V  +  D++V  +++    +  F AGADL      ++
Sbjct: 16  LTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK 74

Query: 111 DQIRSFVSTLRYMTCQLESI----PVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
              R      R      E++     V  +A ++G A GGGLE ALACDIR+A    +M L
Sbjct: 75  AVAREM---ARRFGEAFEALSAFRGV-SIAAINGYAMGGGLECALACDIRIAEEQAQMAL 130

Query: 167 VETKLAIIPGAGGTQRLPRIVG 188
            E  + ++P AGGTQ LP +VG
Sbjct: 131 PEASVGLLPCAGGTQNLPWLVG 152

Length = 258

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN- 109
           L ++ P ARNAL+  +    + A+     D  +R V+L       FCAG +L  RL  N 
Sbjct: 16  LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTG-AGGFFCAGGNLN-RLLENR 73

Query: 110 ----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
                 Q  S +  L      + + P PV+A ++G+A G G  +ALACD+ VAA + +  
Sbjct: 74  AKPPSVQAAS-IDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFV 132

Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAA 193
           +   K+ + P  GG+  L R +   LA 
Sbjct: 133 MAYVKVGLTPDGGGSWFLARALPRQLAT 160

Length = 260

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 84.1 bits (208), Expect = 5e-19
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 2/157 (1%)

Query: 32  RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL 91
            +   ++  +  +  G+  L ++RP   NAL   +  EI+ A   +   ++V  V+L   
Sbjct: 2   NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYG- 59

Query: 92  VKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMAL 151
             ++F AG D+    TL+  +  +     +     + +IP P +A + G A G GL +AL
Sbjct: 60  GHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLAL 119

Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           A D RV+  NV+ G  E    + P   G  RL R  G
Sbjct: 120 AADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAG 156

Length = 222

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 85.2 bits (211), Expect = 6e-19
 Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 14/152 (9%)

Query: 42  SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFC 97
              R GI  + +NRP+A NAL   ++ E+  A + +  D+ V+ ++L    R+     FC
Sbjct: 14  PKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRA-----FC 68

Query: 98  AGADLKHRLTLNEDQIRSFVSTLRYMT-CQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
           +G DL    T  E+  +  V  +      Q+E    P++  ++G A   G E+ALACDI 
Sbjct: 69  SGVDL----TAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDIL 124

Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           VA+   +      K  I P  G +Q+L RI+G
Sbjct: 125 VASRGAKFIDTHAKFGIFPSWGLSQKLSRIIG 156

Length = 265

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 84.1 bits (208), Expect = 1e-18
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 13/154 (8%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR- 105
           G+  L +NRP   N+  A +  E+  A+E +  D+  R ++L    +  FCAG DL  R 
Sbjct: 8   GVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRG-FCAGQDLSERN 65

Query: 106 ------LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
                   L       +   +R    +L ++P+PV+  ++G A G G  +ALACDI +AA
Sbjct: 66  PTPGGAPDLGRTIETFYNPLVR----RLRALPLPVVCAVNGVAAGAGANLALACDIVLAA 121

Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
            + R      K+ +IP +GGT  LPR+VG   A 
Sbjct: 122 ESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAM 155

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 84.4 bits (209), Expect = 1e-18
 Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 32  RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL 91
                I Y  S +  GI ++ +NRP+ RNA     V+E++ A    R D  V  +LL   
Sbjct: 15  EGYEDITYEKSVD--GIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGN 72

Query: 92  V--KDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGL 147
                 FC+G D K R           +  L  +  Q  + ++P PV+A++ G A GGG 
Sbjct: 73  GDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGH 132

Query: 148 EMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
            + + CD+ +AA N   G    K+    G  G+  L RIVG
Sbjct: 133 VLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173

Length = 282

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 83.6 bits (207), Expect = 2e-18
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
            I+E+ ++RP+A NA++A     +       R D E+R  ++    +  F AG DLK   
Sbjct: 12  SILEITLDRPKA-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLK-AA 69

Query: 107 TLNEDQIRSF-VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
              E     F       +T ++  +  PV+A ++G A+GGG E+ALA D  V A N    
Sbjct: 70  AEGEAPDADFGPGGFAGLT-EIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFA 128

Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199
           L E KL I+P +GG  RLP+   +P A   E ++
Sbjct: 129 LPEAKLGIVPDSGGVLRLPKR--LPPAIANEMVM 160

Length = 261

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 82.0 bits (203), Expect = 5e-18
 Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 4/143 (2%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G+  L ++ P  RNAL+A LV ++   + A   D  VR V+L +     FCAGADL    
Sbjct: 15  GVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVL-THTGGTFCAGADLSEAG 73

Query: 107 TLNEDQIRSFVSTLRYMTCQLESI---PVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
               D   + V+  R MT  L +I   P PV+A +DG    GG  +  ACDI VA     
Sbjct: 74  GGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPEST 133

Query: 164 MGLVETKLAIIPGAGGTQRLPRI 186
             L E ++ + P       LPR+
Sbjct: 134 FALTEARIGVAPAIISLTLLPRL 156

Length = 260

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 81.7 bits (202), Expect = 9e-18
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 6/159 (3%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
           +R   + + MNRP+ARNAL+  ++  ++ A + +  D ++R  +L       FCAG DLK
Sbjct: 11  QRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTG-AGGAFCAGMDLK 69

Query: 104 HRLTLNE-DQIRSFVSTLRYMTCQLE--SIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
                   D  +        +   L+   +  P++A ++G A  GG E+    DIRVA  
Sbjct: 70  AATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGE 129

Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199
           + + G+ E K ++ P  G   RL R   IP     + LL
Sbjct: 130 SAKFGISEAKWSLFPMGGSAVRLVR--QIPYTVACDLLL 166

Length = 263

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 22/158 (13%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGADL 102
           G+  L +NRP   N+    +  E+  A++ +  D+  R +LL    R      FCAG DL
Sbjct: 13  GVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRG-----FCAGQDL 66

Query: 103 KHRLTLNEDQ-------IRSFVSTL-RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
             R              I +F + L R    +L ++P+PV+A ++G A G G  +ALACD
Sbjct: 67  ADRDVTPGGAMPDLGESIETFYNPLVR----RLRALPLPVIAAVNGVAAGAGANLALACD 122

Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           I +AA +        K+ ++P +GGT  LPR+VG+  A
Sbjct: 123 IVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARA 160

Length = 262

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 80.7 bits (199), Expect = 2e-17
 Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 5/157 (3%)

Query: 34  LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
              I Y  S +  GI ++ +NRPQ RNA     V+EI+ A++  R D ++  V+L     
Sbjct: 1   FEDIRYEKSTD--GIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGD 58

Query: 94  DVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMAL 151
             FC+G D K R         S V  L  +  Q  + + P PV+A+++G A GGG  + +
Sbjct: 59  KAFCSGGDQKVR-GDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHM 117

Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
            CD+ +AA N R G    K+    G  G+  + RIVG
Sbjct: 118 MCDLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVG 154

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 10/126 (7%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           R G+  L +NRPQA NAL+  ++  +  A++AI  D  VR V+L +  K  FCAG DLK 
Sbjct: 18  RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK-AFCAGHDLK- 75

Query: 105 RLTLNEDQIRSFVSTL-----RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
            +        ++   L     R M   + ++P PV+A + G A   G ++  +CD+ VAA
Sbjct: 76  EMRAARG--LAYFRALFARCSRVMQ-AIVALPQPVIARVHGIATAAGCQLVASCDLAVAA 132

Query: 160 SNVRMG 165
              R  
Sbjct: 133 DTARFA 138

Length = 266

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 79.9 bits (197), Expect = 4e-17
 Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 13/162 (8%)

Query: 38  IYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
           I   SP    +  L +NRP  RNAL+     E   A+ ++  +  V  ++L S   D FC
Sbjct: 9   IIQKSPNSS-VFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIIL-SGAGDHFC 66

Query: 98  AGADLKHRLTLNED-----------QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGG 146
           +G DLK   +++E            ++R  +  L+     +E    PV+A + G+  GGG
Sbjct: 67  SGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGG 126

Query: 147 LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           +++  ACDIR  + +    + E  LAI    G  QRLP IVG
Sbjct: 127 VDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVG 168

Length = 275

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 79.2 bits (196), Expect = 8e-17
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 10/170 (5%)

Query: 23  YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEE 82
           Y+    ++ ++   I+Y ++    GI ++ +NRP+ RNA     V+E++ A    R D+ 
Sbjct: 1   YAPVEWQDCKEYEDILYKSAD---GIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDN 57

Query: 83  VRCVLLRSLVKDVFCAGADLKHRLT---LNEDQI-RSFVSTLRYMTCQLESIPVPVLAVL 138
           +  ++L       FC+G D K R     +++D + R  V  L+     + + P PV+A++
Sbjct: 58  IGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQR---LIRTCPKPVIAMV 114

Query: 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
            G A GGG  + L CD+ +AA N   G    K+    G  G   L RIVG
Sbjct: 115 AGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVG 164

Length = 273

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 78.6 bits (194), Expect = 1e-16
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 14/163 (8%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G+  + +NRP   NA    +  E+  A++    D  VR ++L    +  FCAGAD+    
Sbjct: 15  GVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRG-FCAGADMGELQ 73

Query: 107 TLNEDQIRSFVSTLRYMTCQ----------LESIPVPVLAVLDGSAYGGGLEMALACDIR 156
           T++    R       ++  +          L ++  PV+A ++G+  G GL  AL CD+R
Sbjct: 74  TIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVR 133

Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199
            AA   +      +  +I   G +  LPR+VG    AL  DLL
Sbjct: 134 FAADGAKFTTAFARRGLIAEHGISWILPRLVG-HANAL--DLL 173

Length = 272

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 79.1 bits (195), Expect = 2e-16
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 8/172 (4%)

Query: 21  PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
             +       G++ T IIY  +    GI ++ +NRP+ RNA     V+E+  A    R D
Sbjct: 51  VVWRKVPDGSGKEFTDIIYEKAVGE-GIAKITINRPERRNAFRPRTVKELQRAFNDARDD 109

Query: 81  EEVRCVLLRSLVKDVFCAGADL----KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLA 136
             V  ++L       FC+G D     K      +D  R  V  L+    Q+  +P PV+A
Sbjct: 110 SSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQ---IQIRRLPKPVIA 166

Query: 137 VLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           ++ G A GGG  + + CD+ +AA N   G    K+       G+  + R+VG
Sbjct: 167 MVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVG 218

Length = 327

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 76.3 bits (188), Expect = 7e-16
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-- 104
           G+  +  N P   NA++  + E +  A+ A   D+ +R V+L    +  F +GAD+    
Sbjct: 20  GLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFE 79

Query: 105 RLTLNEDQIRSF--VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
               + + + ++            L     P +A + G   GGG+ +ALACDIR+AA + 
Sbjct: 80  ESRSDAEAVAAYEQAVEAAQAA--LADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDS 137

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAAL 194
           R G+   +L +  G  G + L  +VG   A  
Sbjct: 138 RFGIPAARLGLGYGYDGVKNLVDLVGPSAAKD 169

Length = 269

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 75.8 bits (187), Expect = 9e-16
 Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 3/147 (2%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
            +  + +NRP+A NAL+  +++E+L A++ +  +     V+LR   +  F AG D+K  L
Sbjct: 15  RVATIMLNRPEALNALDEPMLKELLQALKEVA-ESSAHIVVLRGNGR-GFSAGGDIKMML 72

Query: 107 TLN-EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
           + N E +    ++T+  +   L ++P   ++ + G A G GL +AL  D  +A  + ++ 
Sbjct: 73  SSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLA 132

Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLA 192
           +    + +IP  GG   L + VG   A
Sbjct: 133 MNFIGIGLIPDGGGHFFLQKRVGENKA 159

Length = 260

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 75.6 bits (186), Expect = 1e-15
 Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---K 103
           G   L ++R    NA NA ++ E++ A++ ++ D  +R +LLR   +  F AGADL   +
Sbjct: 15  GFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRH-FSAGADLAWMQ 73

Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
               L+ +        L  +   L  + +P LAV+ G+A+GG L +   CD+ + A + +
Sbjct: 74  QSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQ 133

Query: 164 MGLVETKLAIIP 175
             L E ++ + P
Sbjct: 134 FCLSEVRIGLAP 145

Length = 265

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 74.4 bits (183), Expect = 3e-15
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 37  IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
           IIY    +   +  L +NRP+  N  N  + +EIL A+     D  VR +L+ +  K VF
Sbjct: 4   IIYEVEDD---LATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGK-VF 59

Query: 97  CAGADLKH-RLTLNEDQIRSFV---STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALA 152
             G DL   +  ++ED ++S V     +  ++  ++ +P PV+  +DG+  G    MA+A
Sbjct: 60  SVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVA 119

Query: 153 CDIRVAASNVRM--GLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
            D  +A++  +     V   LA  P AGG   L R +G+  A 
Sbjct: 120 ADFCIASTKTKFIQAFVGVGLA--PDAGGLFLLTRAIGLNRAT 160

Length = 255

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 73.8 bits (182), Expect = 5e-15
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 17/154 (11%)

Query: 44  ERPGIVELC-MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
           ER G V L  ++RP  RNA ++ +++++  A+     D+E+R  +L +   + F AG DL
Sbjct: 4   ERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFA-HGEHFTAGLDL 62

Query: 103 --------KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
                          E  I  + +  R ++        P++  + G     G+E+ LA D
Sbjct: 63  ADVAPKLAAGGFPFPEGGIDPWGTVGRRLS-------KPLVVAVQGYCLTLGIELMLAAD 115

Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           I VAA N R   +E +  I+P  G T R P+  G
Sbjct: 116 IVVAADNTRFAQLEVQRGILPFGGATLRFPQAAG 149

Length = 255

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score = 74.9 bits (185), Expect = 5e-15
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-- 104
           G++ L  NRP+A NAL+  ++  I  A++A   D+ V  V++    +  FCAG D++   
Sbjct: 14  GVITL--NRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALY 71

Query: 105 --RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
                 +      F      +   +   P P +A++DG   GGG+ ++     R+     
Sbjct: 72  EAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERT 131

Query: 163 RMGLVETKLAIIPGAGGTQRLPR 185
           +M + ET +   P  GGT  L R
Sbjct: 132 KMAMPETGIGFFPDVGGTYFLSR 154

Length = 342

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 73.0 bits (180), Expect = 7e-15
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 35/152 (23%)

Query: 53  MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-------HR 105
           +NRP+ RNA++      +  A  A   D+     +L       FCAGADLK       +R
Sbjct: 18  LNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWG-AGGTFCAGADLKAVGTGRGNR 76

Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
           L  + D           M      +  PV+A + G A  GGLE+AL CD+RVA  +   G
Sbjct: 77  LHPSGDGP---------MGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFG 127

Query: 166 ---------LVETKLAIIPGAGGTQRLPRIVG 188
                    L++         GGT RLPR++G
Sbjct: 128 VFCRRWGVPLID---------GGTVRLPRLIG 150

Length = 254

>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 18/177 (10%)

Query: 30  EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIR-----GDEEVR 84
           E  +L+Q+  +   ER  ++ + M R Q R   N  L+++I+    AIR         V 
Sbjct: 10  EAGELSQLRVYYEEER-NVMWMYM-RAQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVD 67

Query: 85  CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESI---------PVPVL 135
             +L S V  VF  G DL     L     R   + L Y    ++ +             +
Sbjct: 68  FWVLASDVPGVFNLGGDLALFAELIRAGDRD--ALLAYARACVDGVHAFHRGFGAGAISI 125

Query: 136 AVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           A++ G A GGG E AL+    +A    +MG  E    + PG G    L R VG  LA
Sbjct: 126 ALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLA 182

Length = 287

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 6/153 (3%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI  + +NRP+ RNA++ TL  E++  ++A+  D++   ++L     D + AG DLK   
Sbjct: 17  GIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTG-AGDAWSAGMDLKEYF 75

Query: 107 TLNEDQIRSFVSTLRYMTCQ----LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
              + Q       +R         L     P +A+++G  +GGG    +ACD+ +AA   
Sbjct: 76  RETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEA 135

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAALY 195
           + GL E    I PG G ++ +   VG    ALY
Sbjct: 136 QFGLSEINWGIPPGGGVSKAMADTVG-HRDALY 167

Length = 275

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 7/138 (5%)

Query: 53  MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED- 111
           ++ P   NAL+  L +E++   + I    +VR V+L    K VFCAGADLK R  + +  
Sbjct: 19  LDNPPV-NALSRELRDELIAVFDEISERPDVRVVVLTGAGK-VFCAGADLKGRPDVIKGP 76

Query: 112 -QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
             +R+     R     +     PV+A ++G A G GL +  +CDI VA+ N   GL E  
Sbjct: 77  GDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEID 136

Query: 171 LAIIPGAGGTQRLPRIVG 188
           + +   AGG +   R+ G
Sbjct: 137 VGL---AGGGKHAMRLFG 151

Length = 257

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 70.2 bits (172), Expect = 1e-13
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           RP I  + +NRP+  N++   ++  +  A+  +  D  VR V+L    +  F +GAD K 
Sbjct: 17  RPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRG-FSSGADHKS 75

Query: 105 RLTL-NEDQIRSFVSTLRYM------TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
              + + + +      LR M         L  +  PV+A ++G A GGGL +ALA DIRV
Sbjct: 76  AGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRV 135

Query: 158 AASN-------VRMGLVETKLA---IIPGAGGTQR 182
           A+S+       +  GL  ++L    ++P A G+ R
Sbjct: 136 ASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSR 170

Length = 276

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 32/155 (20%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
              I  + +NRP+ARNA N  ++ E+  A      D+ VR ++L    K  F AG DL  
Sbjct: 11  AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKH-FSAGHDLGS 69

Query: 104 ------------HRLTLNEDQIRSFVSTLRY---------MTCQLESIPVPVLAVLDGSA 142
                          TL  D         RY         M  +   +P P +A + G+ 
Sbjct: 70  GTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGAC 129

Query: 143 YGGGLEMALACDIRVAASN-------VRMGL--VE 168
             GGL +A  CD+ VA+ +       VRMG+  VE
Sbjct: 130 IAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVE 164

Length = 288

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 1/144 (0%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           R GI  + +NRP   NA      +E++ A++    D ++  ++L       FC G D + 
Sbjct: 9   RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD-QS 67

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
                 D   +    +  +   +  +P PV+A + G A GGG  +   CD+ +A+   + 
Sbjct: 68  THDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQF 127

Query: 165 GLVETKLAIIPGAGGTQRLPRIVG 188
           G V  K+  +    GT  L R+VG
Sbjct: 128 GQVGPKVGSVDPGYGTALLARVVG 151

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 6/146 (4%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
            R G   + M+RP   NALN  +  E ++ ++ I  D ++R V++    +  FC GADL 
Sbjct: 6   SREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGR-AFCVGADLS 64

Query: 104 H-RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
                   D   +F   +R    ++       ++ ++G   G  + +AL+ D + A+ +V
Sbjct: 65  EFAPDFAIDLRETFYPIIR----EIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDV 120

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVG 188
           +      +L +    G    L ++ G
Sbjct: 121 KFVTAFQRLGLASDTGVAYFLLKLTG 146

Length = 248

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 43/192 (22%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
              I  + +NRP+  NA+ A    E+  AVE    D  V  +L+    K  FCAG DL  
Sbjct: 17  TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKG-FCAGYDLSA 75

Query: 104 ------------------HRLTLNEDQIRSFVSTLRYMTCQLES------IPVPVLAVLD 139
                               +    D     +   + M+  +           P +A + 
Sbjct: 76  YAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVH 135

Query: 140 GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAG------GTQRLPRIVGIPLAA 193
           G    GG ++AL CD  +AA + ++G   T++  +P  G      G QR  R+       
Sbjct: 136 GYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRLGPQRAKRL------- 188

Query: 194 LYEDLLNNDCMS 205
               L   DC++
Sbjct: 189 ----LFTGDCIT 196

Length = 302

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 22/148 (14%)

Query: 30  EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLR 89
            G   T I YH + +  G V +  +RP+ RNA     V+E+  A++  R   +V CVLL 
Sbjct: 18  PGFDFTDITYHRAVD-QGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLT 76

Query: 90  S---LVKD---VFCAGADLKHR-----------LTLNEDQIRSFVSTLRYMTCQ--LESI 130
                 KD    FC+G D + R                D  R+    L  +  Q  +  +
Sbjct: 77  GNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARA--GRLHILEVQRLIRFM 134

Query: 131 PVPVLAVLDGSAYGGGLEMALACDIRVA 158
           P  V+AV+ G A GGG  + + CD+ +A
Sbjct: 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLA 162

Length = 302

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 21/143 (14%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
            PG++E+ +N P A NA +A +  E+      +  D +VR VL+R   K  F AG DL  
Sbjct: 19  PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGK-AFSAGGDLA- 76

Query: 105 RLTLNEDQIRSFVSTLRYMT-----------CQLESIPVPVLAVLDGSAYGGGLEMALAC 153
              L E+    F    R              C       P+++ + G A G GL  AL  
Sbjct: 77  ---LVEEMADDFEVRARVWREARDLVYNVINC-----DKPIVSAIHGPAVGAGLVAALLA 128

Query: 154 DIRVAASNVRMGLVETKLAIIPG 176
           DI +AA + R+    T+L +  G
Sbjct: 129 DISIAAKDARIIDGHTRLGVAAG 151

Length = 268

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 58.2 bits (141), Expect = 9e-10
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 22/156 (14%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVFCAGADLKHR 105
           G+  L ++ P+  NA++  ++  +  A++AI  G  EVRC++L    +  FC GA+L+ R
Sbjct: 13  GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRG-FCTGANLQGR 71

Query: 106 LTLNE------DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
            +         D   +  +       +L ++P P++  ++G A G G+  AL  D+ + A
Sbjct: 72  GSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCA 131

Query: 160 SNV-------RMGLVETKLAIIPGAGGTQRLPRIVG 188
            +        R+GLV       P  G T  LPR+VG
Sbjct: 132 RSAYFLQAFRRIGLV-------PDGGSTWLLPRLVG 160

Length = 266

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 5/132 (3%)

Query: 46  PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
             +  L ++RP+A+N +N  L+ E +  ++  R +     V+L  L  +VFC GAD    
Sbjct: 12  GDVCFLQLHRPEAQNTINDRLIAECMDVLD--RCEHAATIVVLEGL-PEVFCFGADFSAI 68

Query: 106 LTLNED-QIRSFVSTLRY-MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
               +  +     +   Y +  +L + P   +A + G    GG+    A DI +A     
Sbjct: 69  AEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAP 128

Query: 164 MGLVETKLAIIP 175
             L E    +IP
Sbjct: 129 FSLSELLFGLIP 140

Length = 255

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 46  PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
           PGI E+ ++ P   NAL +     +  A+ A   D + R V+LR+  +  F AG D+K  
Sbjct: 10  PGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRG-FNAGVDIKE- 66

Query: 106 LTLNEDQIRSFVSTLRYMTCQLESI---PVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
                    + +   R       ++    VPV+A + G   GGG+ +    D+ VA+ + 
Sbjct: 67  -LQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDA 125

Query: 163 RMGLVETKLAIIPGA-GGTQRLPRIVG 188
             GL E    +  GA G    L R+V 
Sbjct: 126 TFGLPE----VDRGALGAATHLQRLVP 148

Length = 249

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 5/149 (3%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
           E+  +  L +NRP+  NAL+  ++  +L    A   D  V+ V+L+   +  FCAG D+ 
Sbjct: 15  EKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGR-AFCAGGDVA 73

Query: 104 HRL-TLNEDQIR---SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
             +  + +   R   +F S    +   + +     +++L+G   GGG  +++    R+A 
Sbjct: 74  AVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIAT 133

Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
            N    + ET L + P  G +  L R+ G
Sbjct: 134 ENTVFAMPETALGLFPDVGASYFLSRLPG 162

Length = 381

>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 32/135 (23%)

Query: 69  EILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADLK--------HRL--------TLNED 111
           E+  AV+ IR +  EVR V++ S    VFC+GA++          ++        T N  
Sbjct: 52  ELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGI 111

Query: 112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD--IRVAASNVRMGLVET 169
           +  S  S L++            LA ++G+  GGG E+ALACD  + V   +  + L E 
Sbjct: 112 EDSSRHSGLKF------------LAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEV 159

Query: 170 K-LAIIPGAGGTQRL 183
             L ++PG GG  R+
Sbjct: 160 PLLGVLPGTGGLTRV 174

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546

>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 36/137 (26%)

Query: 69  EILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADLK------HRLTLN------------ 109
           E+  A++ IR +  EVR V++ S    VFC+GA++       H   +N            
Sbjct: 56  ELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGI 115

Query: 110 EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD--IRVAASNVRMGLV 167
           ED  R   S L++            +A ++G+  GGG E+ALACD  + V   +  + L 
Sbjct: 116 EDSSRH--SGLKF------------IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLP 161

Query: 168 ETK-LAIIPGAGGTQRL 183
           E   L ++PG GG  R+
Sbjct: 162 EVPLLGVLPGTGGLTRV 178

Length = 550

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 52.6 bits (126), Expect = 7e-08
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 60  NALNATLVEEILTAVEAIRGDEEVRCVLLRS-LVKDVFCAGADLK--HRLTLNEDQIRSF 116
           N++   +   +  A+ A+  D  VR V+  S L +DVF AG D+   +    +  +   F
Sbjct: 33  NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEF 92

Query: 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAI 173
             T      +L    +  +  + G+   GG  ++L CD R+  +   MGL E  L I
Sbjct: 93  WLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGI 149

Length = 278

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 10/157 (6%)

Query: 44  ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
           ER G ++ L + RP+A N ++A ++  +  A+     D  +R VLL +     F  GA +
Sbjct: 6   ERDGKLLRLRLARPKA-NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPH-FSFGASV 63

Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
              +    DQ  + +++L  +   +   PVP+L  + G   GGGLE+A A ++  AA + 
Sbjct: 64  AEHMP---DQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDA 120

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199
           ++G  E  L +   A       R   +   A  EDLL
Sbjct: 121 KLGQPEIVLGVFAPAASCLLPER---MGRVA-AEDLL 153

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 22/155 (14%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR- 105
           G+  + +NRP+ +N L      E+      +   ++V+ V+L       FC+G D+ H  
Sbjct: 26  GVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTG-AGGNFCSGGDV-HEI 83

Query: 106 ----LTLNEDQIRSFVSTLRYMTCQL----ESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
                 ++  ++ +F      MT  L     + P P++A +DG   G G  +A+A D+R+
Sbjct: 84  IGPLTKMDMPELLAFTR----MTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRL 139

Query: 158 AASNVRMGLVETK--LAIIPGA--GGTQRLPRIVG 188
              + +   + T+  LA   GA  G    LPRI+G
Sbjct: 140 GTPSAKTAFLFTRVGLA---GADMGACALLPRIIG 171

Length = 277

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 18/175 (10%)

Query: 21  PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
           PNY+ +   + + L +     +  R  I    +NRP + NAL   +V  +    E+   +
Sbjct: 32  PNYAANDDLQDQVLVE---GRAKSRAAI----LNRPSSLNALTIPMVARLKRLYESWEEN 84

Query: 81  EEVRCVLLRSLVKDVFCAGADLKHRLTLNE-------DQIRSFVSTLRYMTCQLESIPVP 133
            ++  VL++   +  FC+GAD+   ++L         ++ + F   L        +   P
Sbjct: 85  PDIGFVLMKGSGR-AFCSGADV---VSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKP 140

Query: 134 VLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
            +A++DG   G G  +++    RV          E ++   P AG +  L R+ G
Sbjct: 141 NVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPG 195

Length = 407

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 5/140 (3%)

Query: 53  MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD---LKH-RLTL 108
           +NRP A NAL   +   +    +    D  +  V+++   +  FCAG D   L H R   
Sbjct: 52  LNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGR-AFCAGGDIVSLYHLRKRG 110

Query: 109 NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVE 168
           + D IR F S+L      L +   P +A+L+G   GGG  +++    RVA         E
Sbjct: 111 SPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPE 170

Query: 169 TKLAIIPGAGGTQRLPRIVG 188
           T +   P AG +  L  + G
Sbjct: 171 TIIGFHPDAGASFNLSHLPG 190

Length = 401

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 14/149 (9%)

Query: 46  PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
           PG+  +  NRP+ +NA+   +   +  A++A   D+ +R  +     +  F AG D++  
Sbjct: 14  PGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLG-TEGCFSAGNDMQDF 72

Query: 106 LTLN------EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
           L           +I  F+         L     P+++ +DG A G G  + L CD+  A+
Sbjct: 73  LAAAMGGTSFGSEILDFLIA-------LAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFAS 125

Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
                      LA++P AG +   PR++G
Sbjct: 126 PRSLFRTPFVDLALVPEAGSSLLAPRLMG 154

Length = 251

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 5/148 (3%)

Query: 46  PGI--VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
           PG+    + ++ P+  N+    +V+ I+ A      D +V  V+  ++    FC G + K
Sbjct: 34  PGLYNAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTK 93

Query: 104 HRLTL---NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
                   N  + R ++     M   +     PV+  ++G   GGG E+ +A D  +A  
Sbjct: 94  EYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQD 153

Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVG 188
               G    K    P  G T  LP ++G
Sbjct: 154 LANFGQAGPKHGSAPIGGATDFLPLMIG 181

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 3/138 (2%)

Query: 53  MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTLNE 110
           +NRP+  N ++ ++V  +   +E    D+ V  ++++   +  F AG DLK  +    ++
Sbjct: 26  LNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGR-AFSAGGDLKMFYDGRESD 84

Query: 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
           D     V  + ++   + +     +A++ G   GGG  + +    RV          E  
Sbjct: 85  DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEAS 144

Query: 171 LAIIPGAGGTQRLPRIVG 188
           +      G +  L R+ G
Sbjct: 145 VGFHTDCGFSYILSRLPG 162

Length = 379

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 20/135 (14%)

Query: 48  IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL- 106
           +  + +NRP+  N +   + +EI  A+     D++++ ++LR   +  F  G D      
Sbjct: 15  VATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGR-AFSGGYDFGGGFQ 73

Query: 107 ----TLNED------------QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMA 150
                +  D              R    T ++M   +     PV+A + G   GG  + A
Sbjct: 74  HWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMA--IWRASKPVIAQVHGWCVGGASDYA 131

Query: 151 LACDIRVAASNVRMG 165
           L  DI +A+ +  +G
Sbjct: 132 LCADIVIASDDAVIG 146

Length = 298

>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 62  LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTLNEDQIRSFVST 119
           LN TL++ I +A+  ++       VL+ +     F  G DL           ++   V+ 
Sbjct: 23  LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAK 82

Query: 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
           LR +   L S+P+P +A + G A   G  +AL+ D
Sbjct: 83  LRPLVADLISLPMPTIAAVTGHASAAGFILALSHD 117

Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
KOG1680|consensus	290		100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
KOG1679|consensus	291		100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
KOG1681|consensus	292		100.0
KOG0016|consensus	266		100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
KOG1684|consensus	401		100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	99.97
KOG1682|consensus	287		99.96
PF14652	329	DUF4457: Domain of unknown function (DUF4457)	99.94
PF14652	329	DUF4457: Domain of unknown function (DUF4457)	99.74
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.71
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.69
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.57
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.37
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.36
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.33
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.28
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.18
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.15
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.02
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	98.98
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.33
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.29
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.25
KOG1683|consensus	380		98.22
PRK10949	618	protease 4; Provisional	98.21
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.93
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	97.86
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	97.85
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	97.85
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.84
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	97.79
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.79
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	97.74
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	97.67
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	97.62
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.58
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	97.45
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	97.4
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.37
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	97.23
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.21
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.09
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.02
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.01
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	96.98
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	96.84
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	96.82
PRK11778	330	putative inner membrane peptidase; Provisional	96.82
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	96.45
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	96.28
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	96.21
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	96.05
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	95.9
PRK10949	618	protease 4; Provisional	95.33
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	95.29
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	95.17
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	94.85
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	94.42
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	94.3
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	94.04
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	93.17
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	92.67
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	90.87
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	83.35

>KOG1680|consensus

Probab=100.00  E-value=7.4e-44  Score=325.07  Aligned_cols=189  Identities=33%  Similarity=0.491  Sum_probs=168.2

Q ss_pred             CCCcceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC
Q psy504           30 EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN  109 (358)
Q Consensus        30 ~~~~~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~  109 (358)
                      +.+..++....+...+++|+.|+||||+++|+|+..|+.||.+++..++.|+++.++||||. |+.||+|.|++++....
T Consensus        29 ~~~~~~~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~-gksFcsG~Dl~e~~~~~  107 (290)
T KOG1680|consen   29 TDQEFEPIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGS-GKSFCSGADLKEMKKDE  107 (290)
T ss_pred             hccccCcceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcC-CCccccccCHHHHhhcc
Confidence            44556677777788899999999999999999999999999999999999999999999999 89999999999987643


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccch
Q psy504          110 EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI  189 (358)
Q Consensus       110 ~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~  189 (358)
                      .++..  ...+.+.+..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++|+.++|++|.+|++++|+|.+|.
T Consensus       108 ~~~~~--~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~  185 (290)
T KOG1680|consen  108 FQDVS--DGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGK  185 (290)
T ss_pred             ccccc--cccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhCh
Confidence            33211  1112233444558999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          190 PLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       190 ~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      ++|++++  +||++++|       ++|.++|||++|++..+
T Consensus       186 s~Ale~~--ltg~~~~A-------qeA~~~GlVn~Vvp~~~  217 (290)
T KOG1680|consen  186 SRALEMI--LTGRRLGA-------QEAKKIGLVNKVVPSGD  217 (290)
T ss_pred             HHHHHHH--HhcCcccH-------HHHHhCCceeEeecchh
Confidence            9999999  99999999       99999999999998765

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.1e-43  Score=326.75  Aligned_cols=208  Identities=26%  Similarity=0.424  Sum_probs=174.1

Q ss_pred             eeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHH
Q psy504           41 NSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL  120 (358)
Q Consensus        41 l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~  120 (358)
                      +++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++..........+...+
T Consensus        10 ~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~   89 (256)
T PRK06143         10 VTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRL   89 (256)
T ss_pred             eeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHH
Confidence            34457899999999999999999999999999999999999999999999944799999999987654333344555667


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN  200 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt  200 (358)
                      +.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+ |++|++++|++++|..+|++++  ++
T Consensus        90 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~--l~  166 (256)
T PRK06143         90 RDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLL--LT  166 (256)
T ss_pred             HHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHH--Hc
Confidence            78889999999999999999999999999999999999999999999999997 8888899999999999999999  99


Q ss_pred             ccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccc
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN  258 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~  258 (358)
                      |++++|       ++|+++|||+++++..+.......+.......++......|++++
T Consensus       167 g~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~  217 (256)
T PRK06143        167 GETIDA-------AQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLLR  217 (256)
T ss_pred             CCcCCH-------HHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999       999999999999986544434433333323333333333344443

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.1e-42  Score=324.90  Aligned_cols=178  Identities=43%  Similarity=0.706  Sum_probs=163.8

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT  124 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~  124 (358)
                      +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.++++||+|.|++++..........+...++.++
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   81 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTF   81 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999998678999999999876543333444556667788


Q ss_pred             HHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccc
Q psy504          125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCM  204 (358)
Q Consensus       125 ~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i  204 (358)
                      .++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  |||+++
T Consensus        82 ~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~--ltg~~~  159 (251)
T PLN02600         82 SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELI--FTGRRI  159 (251)
T ss_pred             HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHH--HhCCcc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             ccccccccchhhHhcCCceEEEecCCc
Q psy504          205 SSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       205 ~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      ++       ++|+++|||+++++..+.
T Consensus       160 ~a-------~eA~~~Glv~~vv~~~~~  179 (251)
T PLN02600        160 GA-------REAASMGLVNYCVPAGEA  179 (251)
T ss_pred             CH-------HHHHHcCCCcEeeChhHH
Confidence            99       999999999999976543

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-42  Score=324.87  Aligned_cols=183  Identities=36%  Similarity=0.506  Sum_probs=163.9

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC----HHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVS  118 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~----~~~~~~~~~  118 (358)
                      +.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++....    ......+..
T Consensus         8 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (260)
T PRK05980          8 EIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVR   87 (260)
T ss_pred             EEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHH
Confidence            3579999999999999999999999999999999999999999999999447999999999875421    112334555


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      ..+.++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++  
T Consensus        88 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--  165 (260)
T PRK05980         88 RGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELL--  165 (260)
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHH--
Confidence            566788899999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecCCccHH
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH  234 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~  234 (358)
                      ++|++++|       ++|+++|||+++++..+....
T Consensus       166 l~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~  194 (260)
T PRK05980        166 LTGDAFSA-------ERALEIGLVNAVVPHEELLPA  194 (260)
T ss_pred             HcCCccCH-------HHHHHcCCCCcccCHHHHHHH
Confidence            99999999       999999999999976443333

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-42  Score=324.14  Aligned_cols=205  Identities=29%  Similarity=0.354  Sum_probs=171.9

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||++ |++|.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++..........+...+..
T Consensus         8 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK09076          8 EIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGE   86 (258)
T ss_pred             EEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHH
Confidence            4578999999999985 999999999999999999999999999999995589999999998754333323344455667


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  |+|+
T Consensus        87 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~--l~g~  164 (258)
T PRK09076         87 AFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI--LCGE  164 (258)
T ss_pred             HHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH--HcCC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL  257 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~  257 (358)
                      +++|       ++|+++|||+++++..+......++.......++......|+++
T Consensus       165 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l  212 (258)
T PRK09076        165 RVDA-------ATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLI  212 (258)
T ss_pred             cCCH-------HHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999       99999999999998755444433333322333333333334333

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.7e-42  Score=323.03  Aligned_cols=186  Identities=42%  Similarity=0.665  Sum_probs=167.0

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      .+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|.|++++..........+...++.+
T Consensus        10 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   89 (260)
T PRK07657         10 VTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTT   89 (260)
T ss_pred             ccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999944699999999987654433444555667788


Q ss_pred             HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504          124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC  203 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~  203 (358)
                      +..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++  ++|++
T Consensus        90 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~--l~g~~  167 (260)
T PRK07657         90 MEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELI--YTGRR  167 (260)
T ss_pred             HHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHH--HhCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             cccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      +++       ++|+++|||+++++..+.......+
T Consensus       168 ~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~  195 (260)
T PRK07657        168 ISA-------QEAKEIGLVEFVVPAHLLEEKAIEI  195 (260)
T ss_pred             CCH-------HHHHHcCCCCeecCHHHHHHHHHHH
Confidence            999       9999999999999765433333333

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=2.9e-42  Score=326.12  Aligned_cols=186  Identities=26%  Similarity=0.406  Sum_probs=164.1

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH---H-HHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE---D-QIRSFVST  119 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~---~-~~~~~~~~  119 (358)
                      .+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.....   . ........
T Consensus        14 ~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   92 (275)
T PRK09120         14 VEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGA-GDAWSAGMDLKEYFRETDAQPEILQERIRRE   92 (275)
T ss_pred             EECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcC-CCceecCcCHHHHhhccccchhHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999 789999999998643211   1 12223334


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      .+.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  |
T Consensus        93 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ll--l  170 (275)
T PRK09120         93 AYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYI--M  170 (275)
T ss_pred             HHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHH--h
Confidence            56678889999999999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI  239 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~  239 (358)
                      +|++++|       ++|+++|||+++++..+.......+.
T Consensus       171 tg~~~~A-------~eA~~~Glv~~vv~~~~l~~~a~~~a  203 (275)
T PRK09120        171 TGETFTG-------RKAAEMGLVNESVPLAQLRARTRELA  203 (275)
T ss_pred             cCCccCH-------HHHHHcCCcceecCHHHHHHHHHHHH
Confidence            9999999       99999999999998755444444443

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-42  Score=320.83  Aligned_cols=181  Identities=31%  Similarity=0.422  Sum_probs=162.1

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++|+||||++.|+||.+|+.+|.++++.++  +++|+|||||. |++||+|.|++++..............++.
T Consensus         7 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   83 (255)
T PRK08150          7 ELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGE-GDHFCAGLDLSELRERDAGEGMHHSRRWHR   83 (255)
T ss_pred             EeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHH
Confidence            347899999999999999999999999999999987  78999999999 789999999998765332222334455677


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  |+|+
T Consensus        84 ~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~--ltg~  161 (255)
T PRK08150         84 VFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMM--LTGR  161 (255)
T ss_pred             HHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHH--HcCC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHH
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHI  235 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~  235 (358)
                      +++|       ++|+++|||+++++..+.....
T Consensus       162 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a  187 (255)
T PRK08150        162 VYDA-------QEGERLGLAQYLVPAGEALDKA  187 (255)
T ss_pred             cCCH-------HHHHHcCCccEeeCchHHHHHH
Confidence            9999       9999999999999865543333

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.1e-42  Score=324.07  Aligned_cols=206  Identities=23%  Similarity=0.303  Sum_probs=171.4

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC-----------HH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-----------ED  111 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~-----------~~  111 (358)
                      +.+++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++....           ..
T Consensus        11 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~   89 (272)
T PRK06142         11 ELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRT   89 (272)
T ss_pred             EecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhhhcccccccccccchH
Confidence            3478999999999999999999999999999999999999999999998 78999999999874311           11


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhh
Q psy504          112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPL  191 (358)
Q Consensus       112 ~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~  191 (358)
                      ........+.+++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        90 ~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~  169 (272)
T PRK06142         90 DLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGH  169 (272)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHH
Confidence            22233445677888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhcccccccccccccchhhHhcCCceEEEec-CCccHHHHHHHHhhhccccccceecccccc
Q psy504          192 AALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK-FSQPVHISALIVWNYNASIEMSYCGFSLLN  258 (358)
Q Consensus       192 A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~-~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~  258 (358)
                      |++|+  ++|++++|       ++|+++|||+++++. .+.......+.......++......|.+++
T Consensus       170 a~~l~--l~g~~~~a-------~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~  228 (272)
T PRK06142        170 LRELA--LTGRDIDA-------AEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLD  228 (272)
T ss_pred             HHHHH--HhCCCcCH-------HHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999  99999999       999999999999975 332233333332223334444444444443

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=7.9e-42  Score=323.26  Aligned_cols=205  Identities=27%  Similarity=0.387  Sum_probs=171.2

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-----------H
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-----------D  111 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-----------~  111 (358)
                      +.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++.....           +
T Consensus        13 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~   91 (275)
T PLN02664         13 SPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGA-GDHFCSGIDLKTLNSISEQSSSGDRGRSGE   91 (275)
T ss_pred             cCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCceeeCcChHHhhhcccccccccchhhHH
Confidence            3478999999999999999999999999999999999999999999999 789999999998754210           1


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhh
Q psy504          112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPL  191 (358)
Q Consensus       112 ~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~  191 (358)
                      ....+...+++++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        92 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  171 (275)
T PLN02664         92 RLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGN  171 (275)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHH
Confidence            12233445567888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhcccccccccccccchhhHhcCCceEEEec-CCccHHHHHHHHhhhccccccceeccccc
Q psy504          192 AALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK-FSQPVHISALIVWNYNASIEMSYCGFSLL  257 (358)
Q Consensus       192 A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~-~~~~~~~~~l~~~n~~~~~e~~~~gk~L~  257 (358)
                      |++++  |||++++|       ++|+++|||+++++. .+.......+.......++......|.++
T Consensus       172 A~~l~--ltg~~~~a-------~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l  229 (275)
T PLN02664        172 AMELA--LTGRRFSG-------SEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVL  229 (275)
T ss_pred             HHHHH--HhCCCCCH-------HHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999  99999999       999999999999974 33333333333333334444444444443

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-41  Score=321.08  Aligned_cols=182  Identities=27%  Similarity=0.346  Sum_probs=163.1

Q ss_pred             EeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC--HHHHHHHH
Q psy504           40 HNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQIRSFV  117 (358)
Q Consensus        40 ~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~--~~~~~~~~  117 (358)
                      .++..+++|++|+||||++.|+++.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++....  ........
T Consensus        14 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~   92 (268)
T PRK07327         14 RFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADDFEVRARVW   92 (268)
T ss_pred             EEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECC-CCCcccccCHHHHhhccCcHHHHHHHH
Confidence            3333367899999999999999999999999999999999999999999999 68999999999875422  12233344


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      .....++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ 
T Consensus        93 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~-  171 (268)
T PRK07327         93 REARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYL-  171 (268)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHH-
Confidence            5566788899999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEecCCc
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                       |||++++|       ++|+++|||+++++..+.
T Consensus       172 -ltg~~~~a-------~eA~~~Glv~~vv~~~~l  197 (268)
T PRK07327        172 -LLCEPVSG-------EEAERIGLVSLAVDDDEL  197 (268)
T ss_pred             -HcCCccCH-------HHHHHcCCcceecCHHHH
Confidence             99999999       999999999999976443

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.9e-42  Score=322.28  Aligned_cols=186  Identities=24%  Similarity=0.413  Sum_probs=165.3

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc--CHHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSFVSTLR  121 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~--~~~~~~~~~~~~~  121 (358)
                      .+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++...  ..+....+.....
T Consensus        17 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~   96 (269)
T PRK06127         17 KTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVE   96 (269)
T ss_pred             EECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999955899999999987542  1222234445566


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  |+|
T Consensus        97 ~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--ltg  174 (269)
T PRK06127         97 AAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLF--YTA  174 (269)
T ss_pred             HHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHH--HcC
Confidence            788899999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      ++++|       ++|+++|||+++++..+......++
T Consensus       175 ~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~  204 (269)
T PRK06127        175 RRFDA-------AEALRIGLVHRVTAADDLETALADY  204 (269)
T ss_pred             CCCCH-------HHHHHcCCCCEeeCHHHHHHHHHHH
Confidence            99999       9999999999999865443333333

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=8.1e-42  Score=320.01  Aligned_cols=185  Identities=23%  Similarity=0.343  Sum_probs=162.1

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..... ....+...+..
T Consensus         7 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~   85 (256)
T TIGR03210         7 EKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-GRGTIGLPMEE   85 (256)
T ss_pred             EeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-chhHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999995589999999998743211 11122234566


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|++++  ++|+
T Consensus        86 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~ll--l~g~  163 (256)
T TIGR03210        86 LHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIW--YLCR  163 (256)
T ss_pred             HHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHH--HhCC
Confidence            88899999999999999999999999999999999999999999999999998888889999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHH
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISA  237 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~  237 (358)
                      +++|       ++|+++|||+++++..+......+
T Consensus       164 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~  191 (256)
T TIGR03210       164 RYTA-------QEALAMGLVNAVVPHDQLDAEVQK  191 (256)
T ss_pred             CcCH-------HHHHHcCCceeeeCHHHHHHHHHH
Confidence            9999       999999999999986543333333

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-41  Score=322.04  Aligned_cols=188  Identities=27%  Similarity=0.320  Sum_probs=164.2

Q ss_pred             cceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC---
Q psy504           33 KLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN---  109 (358)
Q Consensus        33 ~~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~---  109 (358)
                      .++...+.++..+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++....   
T Consensus         5 ~~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~   83 (276)
T PRK05864          5 RSTMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGA-GRGFSSGADHKSAGVVPHVE   83 (276)
T ss_pred             CCCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcchhhhhcccccc
Confidence            33444455554478999999999999999999999999999999999999999999998 78999999999864211   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceeccccc-Ccccccccc
Q psy504          110 ----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIP-GAGGTQRLP  184 (358)
Q Consensus       110 ----~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p-~~g~s~~L~  184 (358)
                          ..........+++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~  163 (276)
T PRK05864         84 GLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLP  163 (276)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehH
Confidence                111112334556778889999999999999999999999999999999999999999999999997 788899999


Q ss_pred             cccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          185 RIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       185 r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      +++|..+|++++  |+|++++|       ++|+++|||+++++..+
T Consensus       164 ~~vG~~~A~~l~--l~g~~~~a-------~eA~~~Glv~~vv~~~~  200 (276)
T PRK05864        164 RAIGSSRAFEIM--LTGRDVDA-------EEAERIGLVSRQVPDEQ  200 (276)
T ss_pred             hhhCHHHHHHHH--HcCCccCH-------HHHHHcCCcceeeCHHH
Confidence            999999999999  99999999       99999999999997644

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=8.4e-42  Score=319.73  Aligned_cols=178  Identities=33%  Similarity=0.516  Sum_probs=161.1

Q ss_pred             eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHH
Q psy504           42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR  121 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~  121 (358)
                      ++.+++|++||||||++.|++|.+|+.+|.++++.+++|+++|+|||||. |++||+|.|++++......  ..+.....
T Consensus         6 ~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~   82 (255)
T PRK09674          6 VSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMAEKDLA--ATLNDPRP   82 (255)
T ss_pred             EEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC-CCceecccChHhHhccchh--hhHHHHHH
Confidence            34578999999999999999999999999999999999999999999998 7999999999987543211  12223445


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++  ++|
T Consensus        83 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~--l~g  160 (255)
T PRK09674         83 QLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMV--LTG  160 (255)
T ss_pred             HHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHH--HcC
Confidence            678889999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCc
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      +.+++       ++|+++|||+++++..+.
T Consensus       161 ~~~~a-------~eA~~~Glv~~vv~~~~~  183 (255)
T PRK09674        161 ESITA-------QQAQQAGLVSEVFPPELT  183 (255)
T ss_pred             CccCH-------HHHHHcCCCcEecChHHH
Confidence            99999       999999999999976543

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-42  Score=320.89  Aligned_cols=178  Identities=26%  Similarity=0.352  Sum_probs=156.8

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++..........+.....+
T Consensus         4 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   82 (255)
T PRK06563          4 ERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAH-GEHFTAGLDLADVAPKLAAGGFPFPEGGID   82 (255)
T ss_pred             EEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC-CCCCcCCcCHHHHhhccccchhhhhhhhhH
Confidence            4578999999999999999999999999999999999999999999998 789999999998754221111122222222


Q ss_pred             -HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          123 -MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       123 -l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                       +...+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||
T Consensus        83 ~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--ltg  160 (255)
T PRK06563         83 PWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYL--LTG  160 (255)
T ss_pred             HHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHH--HcC
Confidence             33358899999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCC
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      +++++       ++|+++|||+++++..+
T Consensus       161 ~~~~a-------~eA~~~Glv~~vv~~~~  182 (255)
T PRK06563        161 DEFDA-------QEALRLGLVQEVVPPGE  182 (255)
T ss_pred             CCcCH-------HHHHHcCCCcEeeCHHH
Confidence            99999       99999999999997644

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=1.1e-41  Score=319.06  Aligned_cols=184  Identities=30%  Similarity=0.463  Sum_probs=161.6

Q ss_pred             eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH--HH-HHHHHH
Q psy504           42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE--DQ-IRSFVS  118 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~--~~-~~~~~~  118 (358)
                      ++.+++|++||||||++.|++|.+|+.+|.++++.+++|+ +|+|||||. |++||+|.|++++.....  .+ ...+..
T Consensus         3 ~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   80 (256)
T TIGR02280         3 SALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGA-GRGFCAGQDLSERNPTPGGAPDLGRTIET   80 (256)
T ss_pred             EEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECC-CCCcccCcCHHHHhhccccchhHHHHHHH
Confidence            4557999999999999999999999999999999999998 999999999 789999999998754211  11 112222


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      .+..++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  
T Consensus        81 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~--  158 (256)
T TIGR02280        81 FYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA--  158 (256)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH--
Confidence            345577889999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecCCccHHHH
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHIS  236 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~  236 (358)
                      ++|+++++       ++|+++|||+++++..+......
T Consensus       159 l~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~  189 (256)
T TIGR02280       159 MLGEKLDA-------RTAASWGLIWQVVDDAALMDEAQ  189 (256)
T ss_pred             HcCCCCCH-------HHHHHcCCcceeeChHHHHHHHH
Confidence            99999999       99999999999998654333333

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.8e-42  Score=319.64  Aligned_cols=177  Identities=34%  Similarity=0.493  Sum_probs=160.2

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++......  ..+...+..
T Consensus         9 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~   85 (257)
T PRK05862          9 ETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSFM--DVYKGDYIT   85 (257)
T ss_pred             EeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECC-CCceECCcChHhHhccchh--HHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999998 7899999999987643321  122233445


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+  ++|+
T Consensus        86 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--l~g~  163 (257)
T PRK05862         86 NWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLC--LTGR  163 (257)
T ss_pred             HHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHH--HhCC
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCc
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      +++|       ++|+++|||+++++..+.
T Consensus       164 ~~~a-------~eA~~~Glv~~vv~~~~l  185 (257)
T PRK05862        164 MMDA-------AEAERAGLVSRVVPADKL  185 (257)
T ss_pred             ccCH-------HHHHHcCCCCEeeCHhHH
Confidence            9999       999999999999986443

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=9.9e-42  Score=312.90  Aligned_cols=176  Identities=27%  Similarity=0.429  Sum_probs=161.0

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT  124 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~  124 (358)
                      +++|++|+||||++ |+||.+|+.+|.+++++++.|+++|+|||||. |++||+|+|++++......+.....+.+++++
T Consensus        15 ~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   92 (222)
T PRK05869         15 DAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGG-HEIFSAGDDMPELRTLSAQEADTAARVRQQAV   92 (222)
T ss_pred             cCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcCcCcCHHHHhccChhhHHHHHHHHHHHH
Confidence            68999999999985 99999999999999999999999999999998 78999999999876543333333445567788


Q ss_pred             HHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccc
Q psy504          125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCM  204 (358)
Q Consensus       125 ~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i  204 (358)
                      .++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++.+|++++|..+|++++  ++|+++
T Consensus        93 ~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~--ltg~~~  170 (222)
T PRK05869         93 DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELV--FSGRFF  170 (222)
T ss_pred             HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHH--HcCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             ccccccccchhhHhcCCceEEEecCCc
Q psy504          205 SSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       205 ~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      +|       ++|+++||++++++..+.
T Consensus       171 ~a-------~eA~~~Glv~~vv~~~~l  190 (222)
T PRK05869        171 DA-------EEALALGLIDEMVAPDDV  190 (222)
T ss_pred             CH-------HHHHHCCCCCEeeCchHH
Confidence            99       999999999999976543

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-41  Score=318.59  Aligned_cols=202  Identities=29%  Similarity=0.400  Sum_probs=169.8

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      .+++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++........ . ...++.+
T Consensus        10 ~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~-~-~~~~~~~   86 (258)
T PRK06190         10 THDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGA-DPAFCAGLDLKELGGDGSAYG-A-QDALPNP   86 (258)
T ss_pred             eeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccchhh-H-HHHHHHH
Confidence            478999999999999999999999999999999999999999999999 899999999998764322211 1 2345678


Q ss_pred             HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504          124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC  203 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~  203 (358)
                      +.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  ++|++
T Consensus        87 ~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~--ltg~~  164 (258)
T PRK06190         87 SPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMS--LTGDF  164 (258)
T ss_pred             HHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHH--HhCCc
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             cccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504          204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL  257 (358)
Q Consensus       204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~  257 (358)
                      ++|       ++|+++|||+++++..+......++.......++......|+++
T Consensus       165 ~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l  211 (258)
T PRK06190        165 LDA-------ADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKASY  211 (258)
T ss_pred             cCH-------HHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999       99999999999997644333333333332333333333333333

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.4e-42  Score=318.33  Aligned_cols=174  Identities=28%  Similarity=0.413  Sum_probs=159.1

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++..............+.+
T Consensus         8 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   86 (249)
T PRK05870          8 DVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGA-GKAFCAGADLTALGAAPGRPAEDGLRRIYD   86 (249)
T ss_pred             EccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCeecCcChHHHhcccccchHHHHHHHHH
Confidence            3578999999999999999999999999999999999999999999999 789999999998765322112233455566


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++  +||+
T Consensus        87 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~--ltg~  164 (249)
T PRK05870         87 GFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAAL--LFGM  164 (249)
T ss_pred             HHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHH--HhCC
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEE
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLV  226 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv  226 (358)
                      +++|       ++|+++|||++++
T Consensus       165 ~~~a-------~eA~~~Glv~~vv  181 (249)
T PRK05870        165 RFDA-------EAAVRHGLALMVA  181 (249)
T ss_pred             ccCH-------HHHHHcCCHHHHH
Confidence            9999       9999999999998

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-41  Score=319.78  Aligned_cols=205  Identities=31%  Similarity=0.455  Sum_probs=169.7

Q ss_pred             eecCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC------HHHH-H
Q psy504           43 PERPGIVELCMNRPQARNALNA-TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN------EDQI-R  114 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~-~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~------~~~~-~  114 (358)
                      +.+++|++||||||++.|++|. +|+.+|.++++.++.|+++|+|||+|. |++||+|.|++++....      .... .
T Consensus         8 ~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   86 (266)
T PRK09245          8 ERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGA-GTAFSSGGNVKDMRARVGAFGGSPADIRQ   86 (266)
T ss_pred             EEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCHHHHhhccccccccchhHHH
Confidence            3478999999999999999995 999999999999999999999999998 79999999999875321      1111 2


Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHh
Q psy504          115 SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAAL  194 (358)
Q Consensus       115 ~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~  194 (358)
                      .+...+..++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        87 ~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~  166 (266)
T PRK09245         87 GYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAE  166 (266)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHH
Confidence            23334566788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504          195 YEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL  257 (358)
Q Consensus       195 ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~  257 (358)
                      ++  ++|++++|       ++|+++|||+++++..+......++.......++......|.++
T Consensus       167 l~--l~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l  220 (266)
T PRK09245        167 MA--FTGDAIDA-------ATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRLL  220 (266)
T ss_pred             HH--HcCCCcCH-------HHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99  99999999       99999999999997654333333333332333333333334333

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-41  Score=317.86  Aligned_cols=182  Identities=26%  Similarity=0.426  Sum_probs=163.3

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLR  121 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~  121 (358)
                      +.+++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||||.|+++||+|+|++++..... +....+...+.
T Consensus        13 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   92 (262)
T PRK06144         13 EVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRID   92 (262)
T ss_pred             EeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999995579999999998754322 22223445567


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeeccee-cccccCcccccccccccchhhHHhhhhhhc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK-LAIIPGAGGTQRLPRIVGIPLAALYEDLLN  200 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~-lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt  200 (358)
                      +++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..+|++++  ++
T Consensus        93 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~--l~  170 (262)
T PRK06144         93 RVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDML--FT  170 (262)
T ss_pred             HHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHH--Hc
Confidence            7888999999999999999999999999999999999999999999996 99999999999999999999999999  99


Q ss_pred             ccccccccccccchhhHhcCCceEEEecCCccH
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPV  233 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~  233 (358)
                      |++++|       ++|+++|||+++++..+...
T Consensus       171 g~~~~a-------~eA~~~Glv~~vv~~~~l~~  196 (262)
T PRK06144        171 ARLLEA-------EEALAAGLVNEVVEDAALDA  196 (262)
T ss_pred             CCCcCH-------HHHHHcCCcCeecCHHHHHH
Confidence            999999       99999999999998744333

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-41  Score=318.26  Aligned_cols=177  Identities=33%  Similarity=0.489  Sum_probs=161.4

Q ss_pred             eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHH
Q psy504           42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR  121 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~  121 (358)
                      +..+++|++|+||||+++|++|.+|+.+|.++++.+++|+++|+|||||. |++||+|.|++++.....  ...+....+
T Consensus        12 ~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~--~~~~~~~~~   88 (261)
T PRK08138         12 ERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGA--IEMYLRHTE   88 (261)
T ss_pred             EEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECC-CCCeeCCcCHHHHhccch--hHHHHHHHH
Confidence            33478999999999999999999999999999999999999999999998 789999999998754322  123334556


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      +++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  |+|
T Consensus        89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--l~g  166 (261)
T PRK08138         89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMA--LTG  166 (261)
T ss_pred             HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHH--HcC
Confidence            788899999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCC
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      +++++       ++|+++|||+++++..+
T Consensus       167 ~~~~a-------~eA~~~Glv~~vv~~~~  188 (261)
T PRK08138        167 CMVPA-------PEALAIGLVSEVVEDEQ  188 (261)
T ss_pred             CCCCH-------HHHHHCCCCcEecCchH
Confidence            99999       99999999999997654

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=2e-41  Score=317.97  Aligned_cols=208  Identities=34%  Similarity=0.462  Sum_probs=174.4

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++..........+......
T Consensus         9 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   88 (260)
T PRK05809          9 EKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNK   88 (260)
T ss_pred             EEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999994489999999998865443333344455567


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++  ++|+
T Consensus        89 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--l~g~  166 (260)
T PRK05809         89 VFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELI--YTGD  166 (260)
T ss_pred             HHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHH--HhCC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHH-HHHHHHhhhccccccceeccccccc
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH-ISALIVWNYNASIEMSYCGFSLLNT  259 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~-~~~l~~~n~~~~~e~~~~gk~L~~~  259 (358)
                      +++|       ++|+++|||+++++..+.... ......+...++......+..+...
T Consensus       167 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~  217 (260)
T PRK05809        167 MINA-------EEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRG  217 (260)
T ss_pred             CCCH-------HHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            9999       999999999999976443333 2233344444444444444444333

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-41  Score=317.56  Aligned_cols=178  Identities=31%  Similarity=0.531  Sum_probs=161.5

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLR  121 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~  121 (358)
                      +.+++|++||||||++ |++|.+|+.+|.++++.++.|+++|+|||+|. |++||+|.|++++..... .....+....+
T Consensus         7 ~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   84 (257)
T PRK07658          7 RVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQ   84 (257)
T ss_pred             EeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhccCchhhHHHHHHHHH
Confidence            3478999999999985 99999999999999999999999999999999 789999999998754332 22333445567


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+  ++|
T Consensus        85 ~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--l~g  162 (257)
T PRK07658         85 VTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMM--LTS  162 (257)
T ss_pred             HHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHH--HcC
Confidence            788899999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCc
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      +++++       ++|+++|||+++++..+.
T Consensus       163 ~~~~a-------~eA~~~Glv~~vv~~~~l  185 (257)
T PRK07658        163 EPITG-------AEALKWGLVNGVFPEETL  185 (257)
T ss_pred             CCcCH-------HHHHHcCCcCeecChhHH
Confidence            99999       999999999999976443

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-41  Score=317.51  Aligned_cols=178  Identities=27%  Similarity=0.402  Sum_probs=163.2

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVST  119 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~  119 (358)
                      +.+++|++|+||||++.|++|.+|+.+|.++++.+++|+++|+|||+|. |+.||+|.|++++...   .......+...
T Consensus         8 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~   86 (260)
T PRK07511          8 RREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGA-GGFFCAGGNLNRLLENRAKPPSVQAASIDG   86 (260)
T ss_pred             EeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECC-CCCcccCcCHHHHhhcccccchhHHHHHHH
Confidence            3578999999999999999999999999999999999999999999998 7999999999987542   12223445566


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      +++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+  +
T Consensus        87 ~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~--l  164 (260)
T PRK07511         87 LHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELL--L  164 (260)
T ss_pred             HHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHH--H
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCC
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      +|+++++       ++|+++|||+++++..+
T Consensus       165 tg~~~~a-------~eA~~~Glv~~vv~~~~  188 (260)
T PRK07511        165 EGKPISA-------ERLHALGVVNRLAEPGQ  188 (260)
T ss_pred             hCCCCCH-------HHHHHcCCccEeeCchH
Confidence            9999999       99999999999997644

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.6e-41  Score=318.06  Aligned_cols=182  Identities=24%  Similarity=0.384  Sum_probs=158.7

Q ss_pred             EEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHH---HHHH
Q psy504           39 YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED---QIRS  115 (358)
Q Consensus        39 ~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~---~~~~  115 (358)
                      ..++..+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++......   ....
T Consensus         7 l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~   85 (265)
T PRK05674          7 IELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQSADLDYNTNLD   85 (265)
T ss_pred             EEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhcccccchhhhH
Confidence            34443347899999999999999999999999999999999999999999999 7999999999987432111   1112


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhh
Q psy504          116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALY  195 (358)
Q Consensus       116 ~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~l  195 (358)
                      ....+.+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ ++++++|..+|+++
T Consensus        86 ~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a~~l  164 (265)
T PRK05674         86 DARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAARRY  164 (265)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHHHHH
Confidence            23345678889999999999999999999999999999999999999999999999999987765 58899999999999


Q ss_pred             hhhhcccccccccccccchhhHhcCCceEEEecCCc
Q psy504          196 EDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       196 l~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      +  |||+.++|       ++|+++|||+++++..+.
T Consensus       165 ~--ltg~~~~a-------~eA~~~Glv~~vv~~~~l  191 (265)
T PRK05674        165 A--LTAERFDG-------RRARELGLLAESYPAAEL  191 (265)
T ss_pred             H--HhCcccCH-------HHHHHCCCcceecCHHHH
Confidence            9  99999999       999999999999986443

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-41  Score=316.10  Aligned_cols=184  Identities=22%  Similarity=0.376  Sum_probs=163.8

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH----HHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE----DQIRSFVST  119 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~----~~~~~~~~~  119 (358)
                      .+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||. |++||+|+|++++.....    .....+.+.
T Consensus         8 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   86 (255)
T PRK07260          8 VEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINAN-GKVFSVGGDLVEMKRAVDEDDVQSLVKIAEL   86 (255)
T ss_pred             EECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcccccCHHHHHhhccccchhhHHHHHHH
Confidence            478999999999999999999999999999999999999999999999 789999999998753211    112233445


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      +++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  |
T Consensus        87 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~--l  164 (255)
T PRK07260         87 VNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLA--M  164 (255)
T ss_pred             HHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHH--H
Confidence            67788899999999999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHHHH
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISA  237 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~  237 (358)
                      +|++++|       ++|+++|||+++++..+.......
T Consensus       165 ~g~~~sa-------~eA~~~Glv~~vv~~~~l~~~a~~  195 (255)
T PRK07260        165 TGEALTA-------EKALEYGFVYRVAESEKLEKTCEQ  195 (255)
T ss_pred             hCCccCH-------HHHHHcCCcceecCHhHHHHHHHH
Confidence            9999999       999999999999976544333333

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=8e-41  Score=313.46  Aligned_cols=175  Identities=38%  Similarity=0.642  Sum_probs=161.8

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccc-cCHHHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT-LNEDQIRSFVSTLRY  122 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~-~~~~~~~~~~~~~~~  122 (358)
                      .+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++.. ........+....+.
T Consensus        11 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~   89 (257)
T COG1024          11 REDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQD   89 (257)
T ss_pred             eeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhcccchhHHHHHHhHHHH
Confidence            356699999999999999999999999999999999999999999999 699999999999875 222222356677778


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+  +||+
T Consensus        90 ~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~--ltg~  167 (257)
T COG1024          90 LLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELL--LTGE  167 (257)
T ss_pred             HHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHH--HcCC
Confidence            99999999999999999999999999999999999999999999999999999889999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEec
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                      .+++       ++|+++|||+++++.
T Consensus       168 ~~~a-------~eA~~~Glv~~vv~~  186 (257)
T COG1024         168 PISA-------AEALELGLVDEVVPD  186 (257)
T ss_pred             cCCH-------HHHHHcCCcCeeeCC
Confidence            9999       999999999999975

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-41  Score=316.85  Aligned_cols=181  Identities=29%  Similarity=0.459  Sum_probs=159.9

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC---HHH-HHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN---EDQ-IRSFVS  118 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~---~~~-~~~~~~  118 (358)
                      +.+++|++||||||++.|++|.+|+.+|.+++++++ |+++++|||||. |++||+|.|++++....   ... ...+..
T Consensus         9 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   86 (262)
T PRK08140          9 AIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGA-GRGFCAGQDLADRDVTPGGAMPDLGESIET   86 (262)
T ss_pred             EeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECC-CCCcccCcChHHHhccccccchhhHHHHHH
Confidence            347899999999999999999999999999999999 999999999999 78999999999874321   111 112222


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      .+..++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  
T Consensus        87 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~--  164 (262)
T PRK08140         87 FYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLA--  164 (262)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHH--
Confidence            345578889999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecCCccHH
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH  234 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~  234 (358)
                      ++|+++++       ++|+++|||+++++..+....
T Consensus       165 l~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~  193 (262)
T PRK08140        165 LLGEKLSA-------EQAEQWGLIWRVVDDAALADE  193 (262)
T ss_pred             HcCCCcCH-------HHHHHcCCccEeeChHHHHHH
Confidence            99999999       999999999999986543333

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.2e-41  Score=317.64  Aligned_cols=185  Identities=28%  Similarity=0.420  Sum_probs=163.2

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLR  121 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~  121 (358)
                      +.+++|++|+||||+++|++|.+|+.+|.++++.++.|++||+|||||. |++||+|.|++++..... +........+.
T Consensus        16 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   94 (266)
T PRK08139         16 EDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRAARGLAYFRALFARCS   94 (266)
T ss_pred             EeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecC-CCcceeccCHHHHhcccchhHHHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999999 789999999998754322 22334455667


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      +++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++ +++|+|++|..+|++++  ++|
T Consensus        95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~--ltg  171 (266)
T PRK08139         95 RVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEML--LTG  171 (266)
T ss_pred             HHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHH--HcC
Confidence            788899999999999999999999999999999999999999999999999999765 57899999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      ++++|       ++|+++|||+++++..+......++
T Consensus       172 ~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~  201 (266)
T PRK08139        172 EFIDA-------ATAREWGLVNRVVPADALDAAVARL  201 (266)
T ss_pred             CccCH-------HHHHHcCCccEeeChhHHHHHHHHH
Confidence            99999       9999999999999865444443333

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.9e-41  Score=318.17  Aligned_cols=185  Identities=23%  Similarity=0.377  Sum_probs=163.1

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc----CHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL----NEDQIRSFVST  119 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~----~~~~~~~~~~~  119 (358)
                      .+++|++|+||||++.|+++.+|+.+|.++++.++.|+++++|||||. |++||+|.|++++...    .......+...
T Consensus        23 ~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~  101 (277)
T PRK08258         23 VDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGA-GGNFCSGGDVHEIIGPLTKMDMPELLAFTRM  101 (277)
T ss_pred             EECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCC-CCCcccccCHHHHhccccccChhHHHHHHHH
Confidence            478999999999999999999999999999999999999999999998 7899999999987431    11223344455


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceeccccc-CcccccccccccchhhHHhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIP-GAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p-~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      ..+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|..+|++|+  
T Consensus       102 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~--  179 (277)
T PRK08258        102 TGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELL--  179 (277)
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHH--
Confidence            56788899999999999999999999999999999999999999999999999995 778899999999999999999  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      |+|++++|       ++|+++|||+++++..+......++
T Consensus       180 ltg~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~  212 (277)
T PRK08258        180 YTGRSMSA-------EEGERWGFFNRLVEPEELLAEAQAL  212 (277)
T ss_pred             HcCCCCCH-------HHHHHcCCCcEecCHHHHHHHHHHH
Confidence            99999999       9999999999999764433333333

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-41  Score=315.84  Aligned_cols=201  Identities=21%  Similarity=0.279  Sum_probs=167.7

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHH
Q psy504           47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ  126 (358)
Q Consensus        47 ~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~  126 (358)
                      +|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++...... ...+...+.+++..
T Consensus        15 ~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~-~~~~~~~~~~~~~~   92 (251)
T PRK06023         15 GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQDFLAAAMG-GTSFGSEILDFLIA   92 (251)
T ss_pred             cEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcCHHHHhhcccc-chhhHHHHHHHHHH
Confidence            599999999999999999999999999999999999999999998 7899999999987542111 11233445677889


Q ss_pred             HHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccccc
Q psy504          127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSS  206 (358)
Q Consensus       127 i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a  206 (358)
                      +..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  ++|+++++
T Consensus        93 l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~--l~g~~~~a  170 (251)
T PRK06023         93 LAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALL--ALGEGFSA  170 (251)
T ss_pred             HHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHH--HhCCCCCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             ccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccc
Q psy504          207 LDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN  258 (358)
Q Consensus       207 ~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~  258 (358)
                             ++|+++|||+++++..+......++.......++......|++++
T Consensus       171 -------~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~  215 (251)
T PRK06023        171 -------EAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQIARDLMR  215 (251)
T ss_pred             -------HHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                   999999999999976443333333322222333333334444444

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=2.4e-41  Score=317.28  Aligned_cols=178  Identities=31%  Similarity=0.450  Sum_probs=157.6

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLRYM  123 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~~l  123 (358)
                      +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..... ............+
T Consensus        10 ~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (259)
T TIGR01929        10 TDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDV   89 (259)
T ss_pred             CCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999994489999999987642211 1100111124467


Q ss_pred             HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504          124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC  203 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~  203 (358)
                      +..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  ++|++
T Consensus        90 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~--l~g~~  167 (259)
T TIGR01929        90 QRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIW--FLCRQ  167 (259)
T ss_pred             HHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHH--HhCCc
Confidence            7889999999999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             cccccccccchhhHhcCCceEEEecCCc
Q psy504          204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      ++|       ++|+++|||+++++..+.
T Consensus       168 ~~a-------~eA~~~Glv~~vv~~~~l  188 (259)
T TIGR01929       168 YDA-------EQALDMGLVNTVVPLADL  188 (259)
T ss_pred             cCH-------HHHHHcCCcccccCHHHH
Confidence            999       999999999999986443

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.1e-41  Score=315.63  Aligned_cols=176  Identities=29%  Similarity=0.467  Sum_probs=156.6

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLR  121 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~~~  121 (358)
                      +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||. |++||+|.|++++...   ...........+.
T Consensus        12 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   90 (262)
T PRK07468         12 ARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGA-GKSFCAGGDLGWMRAQMTADRATRIEEARRLA   90 (262)
T ss_pred             CCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCcccCCcCHHHHHhhcccchhhHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999 7899999999986431   1111122334556


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++ +++|..+|++|+  ++|
T Consensus        91 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~ll--l~g  167 (262)
T PRK07468         91 MMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANARRVF--MSA  167 (262)
T ss_pred             HHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHHHHHH--HhC
Confidence            78889999999999999999999999999999999999999999999999999999998755 559999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCc
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      +++++       ++|+++|||+++++..+.
T Consensus       168 ~~~~a-------~eA~~~Glv~~v~~~~~l  190 (262)
T PRK07468        168 RLFDA-------EEAVRLGLLSRVVPAERL  190 (262)
T ss_pred             CccCH-------HHHHHcCCcceecCHHHH
Confidence            99999       999999999999986443

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=4.1e-41  Score=316.65  Aligned_cols=186  Identities=28%  Similarity=0.409  Sum_probs=161.6

Q ss_pred             EeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHH
Q psy504           40 HNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVST  119 (358)
Q Consensus        40 ~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~  119 (358)
                      .++..+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++.......   ....
T Consensus        12 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~---~~~~   87 (265)
T PLN02888         12 LVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGS-GRAFCSGVDLTAAEEVFKGD---VKDV   87 (265)
T ss_pred             EEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCcccCCCCHHHHHhhccch---hhHH
Confidence            3344478999999999999999999999999999999999999999999999 78999999999764321111   1112


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      ..+++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  |
T Consensus        88 ~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--l  165 (265)
T PLN02888         88 ETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVS--L  165 (265)
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHH--H
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      +|++++|       ++|+++|||+++++..+......++
T Consensus       166 tg~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~  197 (265)
T PLN02888        166 TAMPLTA-------ETAERWGLVNHVVEESELLKKAREV  197 (265)
T ss_pred             hCCccCH-------HHHHHcCCccEeeChHHHHHHHHHH
Confidence            9999999       9999999999999765433333333

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.2e-41  Score=316.41  Aligned_cols=177  Identities=31%  Similarity=0.483  Sum_probs=162.8

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++....... ..+...+++
T Consensus        10 ~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~   87 (259)
T PRK06688         10 ELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKP-PDELAPVNR   87 (259)
T ss_pred             EEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCccCccCHHHHhccCcch-HHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999999 69999999999876543222 345566778


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  ++|+
T Consensus        88 ~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~--l~g~  165 (259)
T PRK06688         88 FLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEML--LLGE  165 (259)
T ss_pred             HHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHH--HhCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCC
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      ++++       ++|+++|||+++++..+
T Consensus       166 ~~~a-------~eA~~~Glv~~v~~~~~  186 (259)
T PRK06688        166 PLSA-------EEALRIGLVNRVVPAAE  186 (259)
T ss_pred             ccCH-------HHHHHcCCcceecCHHH
Confidence            9999       99999999999997644

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.6e-41  Score=315.33  Aligned_cols=185  Identities=32%  Similarity=0.512  Sum_probs=160.9

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVST  119 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~  119 (358)
                      +.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++...   ...........
T Consensus         9 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (262)
T PRK05995          9 EQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGA-GKAFCAGADLNWMKKMAGYSDDENRADARR   87 (262)
T ss_pred             EeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCccccCcCHHHHhhhcccCchhhhhHHHH
Confidence            3478999999999999999999999999999999999999999999999 6899999999987432   11111222345


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      +..++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..+|++|+  +
T Consensus        88 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~--l  164 (262)
T PRK05995         88 LADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAARRYF--L  164 (262)
T ss_pred             HHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHHHHHH--H
Confidence            6678889999999999999999999999999999999999999999999999999988765 589999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      +|++++|       ++|+++|||+++++..+.......+
T Consensus       165 ~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~  196 (262)
T PRK05995        165 TAERFDA-------AEALRLGLVHEVVPAEALDAKVDEL  196 (262)
T ss_pred             cCCccCH-------HHHHHcCCCCeecCHHHHHHHHHHH
Confidence            9999999       9999999999999764433333333

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5e-41  Score=315.88  Aligned_cols=178  Identities=26%  Similarity=0.447  Sum_probs=156.7

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHH-HHH-H-H-HH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED-QIR-S-F-VS  118 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~-~~~-~-~-~~  118 (358)
                      +.+++|++|+||||+++|++|.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++...... ... . + ..
T Consensus        10 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   88 (263)
T PRK07799         10 EQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGA-GGAFCAGMDLKAATKKPPGDSFKDGSYDPS   88 (263)
T ss_pred             EEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCccccccCHHHHhhccccchhhhhhhhhh
Confidence            3578999999999999999999999999999999999999999999999 7899999999987643211 111 1 1 11


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      .+..+ .++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  
T Consensus        89 ~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~--  165 (263)
T PRK07799         89 RIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLL--  165 (263)
T ss_pred             HHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHH--
Confidence            22223 357899999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecCCc
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      |+|++++|       ++|+++|||+++++..+.
T Consensus       166 ltg~~~~a-------~eA~~~Glv~~vv~~~~l  191 (263)
T PRK07799        166 LTGRHITA-------AEAKEIGLIGHVVPDGQA  191 (263)
T ss_pred             HcCCCCCH-------HHHHHcCCccEecCcchH
Confidence            99999999       999999999999986543

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5e-41  Score=315.20  Aligned_cols=178  Identities=27%  Similarity=0.369  Sum_probs=156.0

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++........  ....+..
T Consensus         9 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~--~~~~~~~   86 (259)
T PRK06494          9 ERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGW--PESGFGG   86 (259)
T ss_pred             EeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchh--hhHHHHH
Confidence            34789999999999999999999999999999999999999999999995589999999998754322111  1112222


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      + ..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  ++|+
T Consensus        87 ~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ll--l~g~  163 (259)
T PRK06494         87 L-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMI--LTGR  163 (259)
T ss_pred             H-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHH--HcCC
Confidence            3 334689999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCcc
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQP  232 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~  232 (358)
                      +++|       ++|+++|||+++++..+..
T Consensus       164 ~~~a-------~eA~~~GLv~~vv~~~~l~  186 (259)
T PRK06494        164 RVTA-------REGLELGFVNEVVPAGELL  186 (259)
T ss_pred             cCCH-------HHHHHcCCCcEecCHhHHH
Confidence            9999       9999999999999864433

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-40  Score=318.80  Aligned_cols=178  Identities=29%  Similarity=0.434  Sum_probs=159.4

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---C----------
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---N----------  109 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~----------  109 (358)
                      +.+++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++...   .          
T Consensus         9 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (296)
T PRK08260          9 DVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADE   87 (296)
T ss_pred             eeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCCeecCcChHHhhhccccccccccccccc
Confidence            3478999999999999999999999999999999999999999999998 7999999999986421   0          


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCccccccccc
Q psy504          110 ----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPR  185 (358)
Q Consensus       110 ----~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r  185 (358)
                          ......+......++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r  167 (296)
T PRK08260         88 EDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPR  167 (296)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHH
Confidence                0011123333456788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          186 IVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       186 ~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      ++|..+|++|+  |+|++++|       ++|+++|||+++++..+
T Consensus       168 ~vG~~~A~~ll--ltg~~~~a-------~eA~~~GLv~~vv~~~~  203 (296)
T PRK08260        168 LVGLQTALEWV--YSGRVFDA-------QEALDGGLVRSVHPPDE  203 (296)
T ss_pred             hhCHHHHHHHH--HcCCccCH-------HHHHHCCCceeecCHHH
Confidence            99999999999  99999999       99999999999997644

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.2e-41  Score=313.71  Aligned_cols=200  Identities=28%  Similarity=0.388  Sum_probs=163.8

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++.......  .....+..
T Consensus         8 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~   84 (254)
T PRK08252          8 ERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGA-GGTFCAGMDLKAFARGERPS--IPGRGFGG   84 (254)
T ss_pred             EEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCceEcCcCHHHHhcccchh--hhHHHHHH
Confidence            3478999999999999999999999999999999999999999999999 78999999999876432111  11112222


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      +.  ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  ++|+
T Consensus        85 ~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~--l~g~  160 (254)
T PRK08252         85 LT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELA--LTGD  160 (254)
T ss_pred             HH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHH--HcCC
Confidence            22  2479999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHH-HHhhhccccccceecccc
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL-IVWNYNASIEMSYCGFSL  256 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l-~~~n~~~~~e~~~~gk~L  256 (358)
                      +++|       ++|+++|||+++++..+......++ ..+...++......++.+
T Consensus       161 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l  208 (254)
T PRK08252        161 MLTA-------ERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIV  208 (254)
T ss_pred             ccCH-------HHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999       9999999999999865433333333 233333333344344433

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.1e-40  Score=316.07  Aligned_cols=198  Identities=26%  Similarity=0.323  Sum_probs=163.8

Q ss_pred             CcccccCCCcceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHc-----CCCceEEEEeecCCCceec
Q psy504           24 STSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRG-----DEEVRCVLLRSLVKDVFCA   98 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~-----d~~vrvVVltg~gg~~Fsa   98 (358)
                      .++|+.++....+.++  ++.+++|++|+|| |++.|+||.+|+.+|.+++++++.     |+++|+|||||.+|++||+
T Consensus         5 ~~~~~~~~~~~~~~i~--~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~Fca   81 (287)
T PRK08788          5 VRPFPEAGELSQLRVY--YEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNL   81 (287)
T ss_pred             ccccccccccCceEEE--EEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEe
Confidence            4566776653344433  3357899999996 989999999999999999999998     8999999999986789999


Q ss_pred             CCCchhcccc----CHHHHHHHHHHHHHHHHHHH---cCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceec
Q psy504           99 GADLKHRLTL----NEDQIRSFVSTLRYMTCQLE---SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKL  171 (358)
Q Consensus        99 G~Dl~~~~~~----~~~~~~~~~~~~~~l~~~i~---~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~l  171 (358)
                      |.|++++...    .......+...+...+.++.   .+|||+||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus        82 G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~l  161 (287)
T PRK08788         82 GGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILF  161 (287)
T ss_pred             CcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhh
Confidence            9999987431    11111122222233333333   7999999999999999999999999999999999999999999


Q ss_pred             ccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccH
Q psy504          172 AIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPV  233 (358)
Q Consensus       172 Gl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~  233 (358)
                      |++|++|++++|++++|..+|++|+  +||+.++|       ++|+++|||+++++..+...
T Consensus       162 Gl~p~~g~~~~l~~~vG~~~A~ell--ltG~~l~A-------~eA~~~GLV~~vv~~~el~~  214 (287)
T PRK08788        162 NLFPGMGAYSFLARRVGPKLAEELI--LSGKLYTA-------EELHDMGLVDVLVEDGQGEA  214 (287)
T ss_pred             CcCCCchHHHHHHHHhhHHHHHHHH--HcCCCCCH-------HHHHHCCCCcEecCchHHHH
Confidence            9999999999999999999999999  99999999       99999999999997654333

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=1.6e-41  Score=315.90  Aligned_cols=207  Identities=33%  Similarity=0.537  Sum_probs=181.6

Q ss_pred             eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHH
Q psy504           42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR  121 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~  121 (358)
                      ++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++||++|. +++||+|.|++++.....+....+...++
T Consensus         2 ~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~   80 (245)
T PF00378_consen    2 YEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGG-GKAFCAGADLKEFLNSDEEEAREFFRRFQ   80 (245)
T ss_dssp             EEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEES-TSESBESB-HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeec-ccccccccchhhhhccccccccccchhhc
Confidence            45689999999999999999999999999999999999999999999998 89999999999988775566778888999


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++.++..+|||+||+|||+|+|||++++++||+|||+++++|++||+++|++|++|++++|+|++|..+|++++  ++|
T Consensus        81 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~--l~g  158 (245)
T PF00378_consen   81 ELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELL--LTG  158 (245)
T ss_dssp             HHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHH--HHT
T ss_pred             cccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccc--ccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccc
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN  258 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~  258 (358)
                      ++++|       ++|+++|||++++++.+.......+.......+.......|+.++
T Consensus       159 ~~~~a-------~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~  208 (245)
T PF00378_consen  159 EPISA-------EEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKALN  208 (245)
T ss_dssp             CEEEH-------HHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             ccchh-------HHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            99999       999999999999988775444444443333444444433443333

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=7.6e-41  Score=316.20  Aligned_cols=205  Identities=26%  Similarity=0.345  Sum_probs=167.5

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC--HHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQIRSFVSTL  120 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~--~~~~~~~~~~~  120 (358)
                      +.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++....  ........ ..
T Consensus        18 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~   96 (273)
T PRK07396         18 KSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRL-NV   96 (273)
T ss_pred             EecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhh-HH
Confidence            3578999999999999999999999999999999999999999999999447999999999864321  11111111 23


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN  200 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt  200 (358)
                      ..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..+|++|+  ++
T Consensus        97 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~--lt  174 (273)
T PRK07396         97 LDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIW--FL  174 (273)
T ss_pred             HHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHH--Hh
Confidence            4567789999999999999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             ccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL  257 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~  257 (358)
                      |++++|       ++|+++|||++|++..+.......+.......++......|+++
T Consensus       175 g~~~~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l  224 (273)
T PRK07396        175 CRQYDA-------QEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAAL  224 (273)
T ss_pred             CCCcCH-------HHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999       99999999999998644333333333222233333333344444

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8e-41  Score=313.96  Aligned_cols=173  Identities=25%  Similarity=0.415  Sum_probs=159.6

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC-HHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTLR  121 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~-~~~~~~~~~~~~  121 (358)
                      +.+++|++|+||||++.|++|.+|+.+|.++++.+ .|+++|+|||+|. |++||+|.|++++.... ......+...++
T Consensus        11 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   88 (260)
T PRK07659         11 KYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTIS   88 (260)
T ss_pred             EeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECC-CCCcccccCHHHHhhccCchhHHHHHHHHH
Confidence            34789999999999999999999999999999999 5899999999998 78999999999875432 223345566677


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      +++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+  ++|
T Consensus        89 ~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~--ltg  166 (260)
T PRK07659         89 EIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQII--WEG  166 (260)
T ss_pred             HHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHH--HhC
Confidence            888999999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEE
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLV  226 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv  226 (358)
                      +.++|       ++|+++|||++++
T Consensus       167 ~~~~a-------~eA~~~Glv~~vv  184 (260)
T PRK07659        167 KKLSA-------TEALDLGLIDEVI  184 (260)
T ss_pred             CccCH-------HHHHHcCChHHHh
Confidence            99999       9999999999999

>KOG1679|consensus

Probab=100.00  E-value=1.1e-40  Score=292.93  Aligned_cols=232  Identities=40%  Similarity=0.601  Sum_probs=207.2

Q ss_pred             cceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH
Q psy504           33 KLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ  112 (358)
Q Consensus        33 ~~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~  112 (358)
                      ..++.+.+++..+.||.+|-+|||.++|+|+.-|+++|.++++++..|+.+|+|+|++..+..||+|+||++-..+++++
T Consensus        26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~E  105 (291)
T KOG1679|consen   26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSE  105 (291)
T ss_pred             CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHH
Confidence            46899999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhH
Q psy504          113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA  192 (358)
Q Consensus       113 ~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A  192 (358)
                      ...|...++.++..+.++|.|+||+++|.|+|||++|+++||+|+|+++++|+++|++++++|++|++++|||.+|.+.|
T Consensus       106 v~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ala  185 (291)
T KOG1679|consen  106 VTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALA  185 (291)
T ss_pred             HHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhcccccccccccccchhhHhcCCceEEEecCCcc--H---HHHHHHHhhhccccccceecccccccCcchhhcc
Q psy504          193 ALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQP--V---HISALIVWNYNASIEMSYCGFSLLNTWGDRYYLG  267 (358)
Q Consensus       193 ~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~--~---~~~~l~~~n~~~~~e~~~~gk~L~~~~g~~~~~g  267 (358)
                      +|++  +|++.+++       .+|...|||++++...++-  .   ...-.+..+-+-++.....+..+..+..-..-.|
T Consensus       186 KELI--ftarvl~g-------~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasg  256 (291)
T KOG1679|consen  186 KELI--FTARVLNG-------AEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAKLAINLGMEVDIASG  256 (291)
T ss_pred             HhHh--hhheeccc-------hhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHHHHhccCceeccccc
Confidence            9999  99999999       8999999999999764322  1   1222234444666777777777777766666666


Q ss_pred             ccchhh
Q psy504          268 LNGIEL  273 (358)
Q Consensus       268 ln~~El  273 (358)
                      +.-.|+
T Consensus       257 l~iEe~  262 (291)
T KOG1679|consen  257 LSIEEM  262 (291)
T ss_pred             ccHHHH
Confidence            655443

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.5e-41  Score=313.50  Aligned_cols=183  Identities=29%  Similarity=0.396  Sum_probs=157.4

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      .+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..........  .....+
T Consensus         9 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~-g~~FcaG~Dl~~~~~~~~~~~~~--~~~~~~   85 (254)
T PRK08259          9 RNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGA-GGTFCAGADLKAVGTGRGNRLHP--SGDGPM   85 (254)
T ss_pred             EECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcChHHHhcccchhhhh--hhcchh
Confidence            478999999999999999999999999999999999999999999998 79999999999875432211111  001112


Q ss_pred             HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504          124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC  203 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~  203 (358)
                      ...+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|.+|++++|++++|..+|++++  ++|++
T Consensus        86 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ll--l~g~~  163 (254)
T PRK08259         86 GPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLI--LTGRP  163 (254)
T ss_pred             hhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHH--HcCCc
Confidence            2234589999999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             cccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      ++|       ++|+++|||+++++..+.......+
T Consensus       164 ~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~  191 (254)
T PRK08259        164 VDA-------DEALAIGLANRVVPKGQARAAAEEL  191 (254)
T ss_pred             cCH-------HHHHHcCCCCEeeChhHHHHHHHHH
Confidence            999       9999999999999875544433333

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=8.8e-41  Score=313.85  Aligned_cols=182  Identities=28%  Similarity=0.400  Sum_probs=159.0

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+ .|++|.+|+.+|.++++.++.|++||+|||||.|+++||+|.|++++....... ..+......
T Consensus         8 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~   85 (261)
T PRK03580          8 TRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADFGPGGFA   85 (261)
T ss_pred             EEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhhhhhhhH
Confidence            357899999999996 599999999999999999999999999999999558999999999875432211 112222234


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  ++|+
T Consensus        86 ~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~--l~g~  163 (261)
T PRK03580         86 GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMV--MTGR  163 (261)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHH--HhCC
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHH
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHI  235 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~  235 (358)
                      +++|       ++|+++|||+++++..+.....
T Consensus       164 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a  189 (261)
T PRK03580        164 RMDA-------EEALRWGIVNRVVPQAELMDRA  189 (261)
T ss_pred             ccCH-------HHHHHcCCCcEecCHhHHHHHH
Confidence            9999       9999999999999865433333

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-40  Score=313.51  Aligned_cols=181  Identities=25%  Similarity=0.414  Sum_probs=161.3

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC-CceEEEEeecCCCceecCCCchhccccCH------HHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADLKHRLTLNE------DQIRSF  116 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~-~vrvVVltg~gg~~FsaG~Dl~~~~~~~~------~~~~~~  116 (358)
                      .+++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++++|||||. |++||+|+|++++.....      .....+
T Consensus        10 ~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   88 (266)
T PRK05981         10 FDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGA-GRGFCTGANLQGRGSGGRESDSGGDAGAAL   88 (266)
T ss_pred             eECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcccccCHHhhhcccccccccchhHHHH
Confidence            46899999999999999999999999999999999876 4999999999 789999999998754211      112233


Q ss_pred             HHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhh
Q psy504          117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE  196 (358)
Q Consensus       117 ~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll  196 (358)
                      ...++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||.++|++|++|++++|++++|..+|++|+
T Consensus        89 ~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~  168 (266)
T PRK05981         89 ETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELS  168 (266)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHH
Confidence            44567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccccccccchhhHhcCCceEEEecCCccHH
Q psy504          197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH  234 (358)
Q Consensus       197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~  234 (358)
                        ++|++++|       ++|+++|||+++++..+....
T Consensus       169 --l~g~~~~a-------~eA~~~Glv~~vv~~~~~~~~  197 (266)
T PRK05981        169 --LLGEKLPA-------ETALQWGLVNRVVDDAELMAE  197 (266)
T ss_pred             --HhCCCcCH-------HHHHHcCCceEeeCHhHHHHH
Confidence              99999999       999999999999986543333

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.5e-40  Score=310.29  Aligned_cols=181  Identities=23%  Similarity=0.367  Sum_probs=161.9

Q ss_pred             eeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHH
Q psy504           41 NSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL  120 (358)
Q Consensus        41 l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~  120 (358)
                      +++.+++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++....... ..+. . 
T Consensus         8 ~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~-~-   83 (249)
T PRK07110          8 LREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGLLSLQTGK-GTFT-E-   83 (249)
T ss_pred             EEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCcChHHHhhccchh-hhHh-h-
Confidence            345578999999999999999999999999999999999999999999999 78999999999875432211 1222 2 


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN  200 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt  200 (358)
                      ..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++  ++
T Consensus        84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~ll--lt  161 (249)
T PRK07110         84 ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEML--LT  161 (249)
T ss_pred             HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHH--Hc
Confidence            5678899999999999999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             ccccccccccccchhhHhcCCceEEEecCCccHH
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH  234 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~  234 (358)
                      |+++++       ++|+++|||+++++..+....
T Consensus       162 g~~~~a-------~eA~~~Glv~~vv~~~~l~~~  188 (249)
T PRK07110        162 ARYYRG-------AELKKRGVPFPVLPRAEVLEK  188 (249)
T ss_pred             CCccCH-------HHHHHcCCCeEEeChHHHHHH
Confidence            999999       999999999999976543333

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=1.2e-40  Score=312.97  Aligned_cols=205  Identities=20%  Similarity=0.315  Sum_probs=170.7

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecC-CCceecCCCchhccccCHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KDVFCAGADLKHRLTLNEDQIRSFVSTLR  121 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~g-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~  121 (358)
                      +.+++|++||||||++.|++|.+|+.+|.++++.++.|+ +|+|||||.+ +++||+|.|++++.....+ ...+...+.
T Consensus         9 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~-~~~~~~~~~   86 (261)
T PRK11423          9 VTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD-PLSYDDPLR   86 (261)
T ss_pred             EeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-HHHHHHHHH
Confidence            347899999999999999999999999999999999887 9999999963 5899999999987432211 123445567


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      +++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|..+|++++  ++|
T Consensus        87 ~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~--l~g  164 (261)
T PRK11423         87 QILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMF--FTA  164 (261)
T ss_pred             HHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHH--HcC
Confidence            788899999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccc
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN  258 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~  258 (358)
                      ++++|       ++|+++|||++|++..+.......+.......++......|++++
T Consensus       165 ~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~  214 (261)
T PRK11423        165 SPITA-------QRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQLR  214 (261)
T ss_pred             CCcCH-------HHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999       999999999999976443333333333333334444444444443

>PLN02921 naphthoate synthase

Probab=100.00  E-value=3.7e-40  Score=317.86  Aligned_cols=204  Identities=25%  Similarity=0.297  Sum_probs=167.1

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHH-HHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVS-TLRYM  123 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~-~~~~l  123 (358)
                      +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++............. ....+
T Consensus        74 ~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  153 (327)
T PLN02921         74 GEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDL  153 (327)
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999448999999999764321110011111 12456


Q ss_pred             HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504          124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC  203 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~  203 (358)
                      +..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  ++|+.
T Consensus       154 ~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ell--ltG~~  231 (327)
T PLN02921        154 QIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMW--FLARF  231 (327)
T ss_pred             HHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHH--HcCCc
Confidence            7789999999999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             cccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504          204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL  257 (358)
Q Consensus       204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~  257 (358)
                      ++|       ++|+++|||+++++..+......++.......++......|+++
T Consensus       232 ~~A-------~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l  278 (327)
T PLN02921        232 YTA-------SEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSAL  278 (327)
T ss_pred             CCH-------HHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            999       99999999999998654444443443332333333333334444

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=2.4e-40  Score=309.17  Aligned_cols=172  Identities=24%  Similarity=0.380  Sum_probs=154.9

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..   ...........+
T Consensus         6 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~-g~~FcaG~Dl~~~~~---~~~~~~~~~~~~   80 (251)
T TIGR03189         6 ERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAE-GPHFSFGASVAEHMP---DQCAAMLASLHK   80 (251)
T ss_pred             EeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECC-CCceecCcChhhhCc---hhHHHHHHHHHH
Confidence            347889999999997 599999999999999999999999999999999 789999999997532   111233445567


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|..+|++|+  |+|+
T Consensus        81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~--ltg~  157 (251)
T TIGR03189        81 LVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLL--YSGR  157 (251)
T ss_pred             HHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHH--HcCC
Confidence            888999999999999999999999999999999999999999999999999987 4578999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecC
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKF  229 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~  229 (358)
                      +++|       ++|+++|||++++++.
T Consensus       158 ~~~a-------~eA~~~Glv~~v~~~~  177 (251)
T TIGR03189       158 SIDG-------AEGARIGLANAVAEDP  177 (251)
T ss_pred             CCCH-------HHHHHCCCcceecCcH
Confidence            9999       9999999999999643

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.3e-40  Score=327.69  Aligned_cols=253  Identities=19%  Similarity=0.280  Sum_probs=195.5

Q ss_pred             eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC----HHHHHHHH
Q psy504           42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFV  117 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~----~~~~~~~~  117 (358)
                      .+.++++++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|. |++||+|+|++++....    .+....++
T Consensus        46 ~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~f  124 (407)
T PLN02851         46 VEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFF  124 (407)
T ss_pred             EEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHH
Confidence            44578999999999999999999999999999999999999999999999 68999999999875421    12344566


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      ...+++...+.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. +++|+ 
T Consensus       125 ~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~-g~~L~-  202 (407)
T PLN02851        125 ENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYL-GEYLA-  202 (407)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHH-HHHHH-
Confidence            7778888899999999999999999999999999999999999999999999999999999999999999975 89998 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccccCcchhhccccchhhhhhc
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELYDEF  277 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~~~g~~~~~gln~~El~~~~  277 (358)
                       |||++++|       .+|+++||++++++..........+...... +..               .     -.++.+++
T Consensus       203 -LTG~~i~a-------~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~-~~~---------------~-----~~~~l~~~  253 (407)
T PLN02851        203 -LTGQKLNG-------VEMIACGLATHYCLNARLPLIEERLGKLLTD-DPA---------------V-----IEDSLAQY  253 (407)
T ss_pred             -HhCCcCCH-------HHHHHCCCceeecCHhhHHHHHHHHHhhccC-CHH---------------H-----HHHHHHHh
Confidence             99999999       9999999999999876553333333322110 000               0     01233333


Q ss_pred             CCcccccccccccCCcccccccCCCCCccChhhhcccccccCCC-CCeeecccC
Q psy504          278 GDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADG-THSWLAPIL  330 (358)
Q Consensus       278 ~~~~~~~~~~~~a~~~~~n~~~~~~~d~r~~~~l~~~~~~t~~~-~~~wl~p~~  330 (358)
                      .+........+...-+-|+.    |++..|++.+++.+....++ ...|..-.+
T Consensus       254 ~~~~~~~~~~~~~~~~~I~~----~F~~~sv~~I~~~L~~~~~~~~~~wa~~~~  303 (407)
T PLN02851        254 GDLVYPDKSSVLHKIETIDK----CFGHDTVEEIIEALENEAASSYDEWCKKAL  303 (407)
T ss_pred             ccccCCCcccHHHHHHHHHH----HhCCCCHHHHHHHHHhcccccchHHHHHHH
Confidence            22110011222222233444    77888999999888764332 356887655

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-40  Score=310.87  Aligned_cols=175  Identities=29%  Similarity=0.527  Sum_probs=157.4

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHH-------H
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRS-------F  116 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~-------~  116 (358)
                      .+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..........       .
T Consensus         9 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   87 (262)
T PRK07509          9 IEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGE-GGAFCAGLDVKSVASSPGNAVKLLFKRLPGN   87 (262)
T ss_pred             eeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECC-CCCcCCCcCHHHHhcccchhhhhHhhhhHHH
Confidence            478999999999999999999999999999999999999999999999 78999999999876432211111       1


Q ss_pred             HHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhh
Q psy504          117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE  196 (358)
Q Consensus       117 ~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll  196 (358)
                      ...+.+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++
T Consensus        88 ~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~  167 (262)
T PRK07509         88 ANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELT  167 (262)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHH
Confidence            12345567778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccccccccchhhHhcCCceEEEec
Q psy504          197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                        |+|++++|       ++|+++|||++++.+
T Consensus       168 --ltg~~~~a-------~eA~~~Glv~~vv~~  190 (262)
T PRK07509        168 --YTARVFSA-------EEALELGLVTHVSDD  190 (262)
T ss_pred             --HcCCCcCH-------HHHHHcCChhhhhch
Confidence              99999999       999999999999854

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-40  Score=312.63  Aligned_cols=177  Identities=28%  Similarity=0.406  Sum_probs=157.9

Q ss_pred             ecC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHH------HHH
Q psy504           44 ERP-GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQI------RSF  116 (358)
Q Consensus        44 ~~~-~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~------~~~  116 (358)
                      .++ +|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|. |++||+|+|++++......+.      ..+
T Consensus        11 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~   89 (272)
T PRK06210         11 VADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPF   89 (272)
T ss_pred             ECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECC-CCCcccccCHHHHhccCcccccccccchhh
Confidence            466 899999999999999999999999999999999999999999998 789999999998754221100      111


Q ss_pred             ----HHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhH
Q psy504          117 ----VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA  192 (358)
Q Consensus       117 ----~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A  192 (358)
                          ...+++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        90 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a  169 (272)
T PRK06210         90 VGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANA  169 (272)
T ss_pred             hhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHH
Confidence                1123556778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          193 ALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       193 ~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      ++|+  |+|++++|       ++|+++|||+++++..+
T Consensus       170 ~~l~--ltg~~~~a-------~eA~~~Glv~~vv~~~~  198 (272)
T PRK06210        170 LDLL--LSARTFYA-------EEALRLGLVNRVVPPDE  198 (272)
T ss_pred             HHHH--HcCCccCH-------HHHHHcCCcceecCHHH
Confidence            9999  99999999       99999999999997644

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=5.1e-40  Score=311.18  Aligned_cols=177  Identities=22%  Similarity=0.326  Sum_probs=156.9

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecC-CCceecCCCchhccccC--HHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KDVFCAGADLKHRLTLN--EDQIRSFVSTLR  121 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~g-g~~FsaG~Dl~~~~~~~--~~~~~~~~~~~~  121 (358)
                      +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.| +++||+|.|++++....  .+....+.....
T Consensus        19 ~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~   97 (278)
T PLN03214         19 PGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQT   97 (278)
T ss_pred             CCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHH
Confidence            6899999999985 6999999999999999999999999999999984 27999999999875321  111223333345


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceeccc-ccCcccccccccccchhhHHhhhhhhc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAI-IPGAGGTQRLPRIVGIPLAALYEDLLN  200 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl-~p~~g~s~~L~r~iG~~~A~~ll~~lt  200 (358)
                      .++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|+ +|++|++++|++++|..+|++|+  |+
T Consensus        98 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~ll--lt  175 (278)
T PLN03214         98 TFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLL--LR  175 (278)
T ss_pred             HHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHH--Hc
Confidence            6778899999999999999999999999999999999999999999999999 59999999999999999999999  99


Q ss_pred             ccccccccccccchhhHhcCCceEEEecCCc
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      |+++++       ++|+++|||+++++..+.
T Consensus       176 g~~~~a-------~eA~~~Glv~~vv~~~~l  199 (278)
T PLN03214        176 GRLVRP-------AEAKQLGLIDEVVPAAAL  199 (278)
T ss_pred             CCccCH-------HHHHHcCCCcEecChHHH
Confidence            999999       999999999999976443

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.7e-40  Score=307.31  Aligned_cols=175  Identities=29%  Similarity=0.445  Sum_probs=157.4

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc--CHH-HHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NED-QIRSFVST  119 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~--~~~-~~~~~~~~  119 (358)
                      +.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++...  ... ....+...
T Consensus        11 ~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   89 (260)
T PRK07827         11 AVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHT-GGTFCAGADLSEAGGGGGDPYDAAVARARE   89 (260)
T ss_pred             EeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCcChHHHhhcccCchhHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999999 7899999999987542  111 12234556


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      +.+++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++ ..+|++++  +
T Consensus        90 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~--l  166 (260)
T PRK07827         90 MTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYY--L  166 (260)
T ss_pred             HHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHH--H
Confidence            67788999999999999999999999999999999999999999999999999999999999999865 56899999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEec
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                      +|++++|       ++|+++|||++++.+
T Consensus       167 ~g~~~~a-------~eA~~~Glv~~v~~~  188 (260)
T PRK07827        167 TGEKFGA-------AEAARIGLVTAAADD  188 (260)
T ss_pred             hCCccCH-------HHHHHcCCcccchHH
Confidence            9999999       999999999998743

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1e-39  Score=321.32  Aligned_cols=178  Identities=25%  Similarity=0.345  Sum_probs=160.5

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC----HHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVS  118 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~----~~~~~~~~~  118 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|. |++||+|+|++++....    ......++.
T Consensus        42 e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~  120 (401)
T PLN02157         42 EGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFS  120 (401)
T ss_pred             EEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999999 68999999999875321    112234445


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      ..+.+...+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. .|++|+  
T Consensus       121 ~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~--  197 (401)
T PLN02157        121 SLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLG--  197 (401)
T ss_pred             HHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHH--
Confidence            55567788999999999999999999999999999999999999999999999999999999999999996 799999  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecCCc
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      |||++++|       .+|+++||++++++..+.
T Consensus       198 LTG~~i~A-------~eA~~~GLv~~vVp~~~l  223 (401)
T PLN02157        198 LTGLKLSG-------AEMLACGLATHYIRSEEI  223 (401)
T ss_pred             HcCCcCCH-------HHHHHcCCceEEeCHhHH
Confidence            99999999       999999999999987554

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7e-40  Score=305.70  Aligned_cols=176  Identities=24%  Similarity=0.295  Sum_probs=155.5

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLR  121 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~  121 (358)
                      +.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..... ...........
T Consensus         7 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   84 (249)
T PRK07938          7 TPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTALIDANRGCF   84 (249)
T ss_pred             ccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHH
Confidence            457899999999998 599999999999999999999999999999998 799999999998754321 22222334456


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++   |++.+|++++|..+|++|+  ++|
T Consensus        85 ~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~--ltg  159 (249)
T PRK07938         85 AAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALF--FTA  159 (249)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHH--HhC
Confidence            67888999999999999999999999999999999999999999999999986   4567899999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCcc
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQP  232 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~  232 (358)
                      ++++|       ++|+++|||+++++..+..
T Consensus       160 ~~~~a-------~eA~~~Glv~~vv~~~~l~  183 (249)
T PRK07938        160 ATITA-------AELHHFGSVEEVVPRDQLD  183 (249)
T ss_pred             CcCCH-------HHHHHCCCccEEeCHHHHH
Confidence            99999       9999999999999864433

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8e-40  Score=304.25  Aligned_cols=168  Identities=31%  Similarity=0.485  Sum_probs=154.2

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      .+++|++||||||+++|++|.+|+.+|.+++++++++ ++|+|||||. |++||+|.|+++...     ...+...+.++
T Consensus         6 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~-g~~F~aG~Dl~~~~~-----~~~~~~~~~~~   78 (243)
T PRK07854          6 RDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQ-GTVFCAGADLSGDVY-----ADDFPDALIEM   78 (243)
T ss_pred             EeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECC-CCceecccCCccchh-----HHHHHHHHHHH
Confidence            4789999999999999999999999999999999865 8999999999 799999999985311     12344556678


Q ss_pred             HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504          124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC  203 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~  203 (358)
                      +.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  |+|++
T Consensus        79 ~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~--ltg~~  156 (243)
T PRK07854         79 LHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML--LGAEK  156 (243)
T ss_pred             HHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH--HcCCC
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             cccccccccchhhHhcCCceEEEe
Q psy504          204 MSSLDTRYMWCTPYRRGLVVTLVI  227 (358)
Q Consensus       204 i~a~~d~~mw~ea~~~GLv~~vv~  227 (358)
                      ++|       ++|+++|||++|+.
T Consensus       157 ~~a-------~eA~~~Glv~~v~~  173 (243)
T PRK07854        157 LTA-------EQALATGMANRIGT  173 (243)
T ss_pred             cCH-------HHHHHCCCcccccC
Confidence            999       99999999999964

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=1.4e-39  Score=316.28  Aligned_cols=178  Identities=25%  Similarity=0.420  Sum_probs=159.0

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC----HHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVS  118 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~----~~~~~~~~~  118 (358)
                      +.+++|++||||||+++|+++.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++....    ......+..
T Consensus         8 ~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (342)
T PRK05617          8 EVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFR   87 (342)
T ss_pred             EEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHH
Confidence            3578999999999999999999999999999999999999999999999548999999999875321    111113444


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      ....++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++.| .+|++|+  
T Consensus        88 ~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~ll--  164 (342)
T PRK05617         88 EEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLA--  164 (342)
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHHHH--
Confidence            4557788999999999999999999999999999999999999999999999999999999999999877 7899999  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecCC
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      |||+.++|       ++|+++|||+++++..+
T Consensus       165 ltG~~i~A-------~eA~~~GLv~~vv~~~~  189 (342)
T PRK05617        165 LTGARISA-------ADALYAGLADHFVPSAD  189 (342)
T ss_pred             HcCCCCCH-------HHHHHcCCcceecCHHH
Confidence            99999999       99999999999997643

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.2e-40  Score=306.61  Aligned_cols=200  Identities=26%  Similarity=0.399  Sum_probs=165.4

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc--CHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSFVSTL  120 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~--~~~~~~~~~~~~  120 (358)
                      +.+++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||+|. |++||+|.|++++...  .......+....
T Consensus         9 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~   86 (257)
T PRK06495          9 EVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGA-GKVFCAGADLKGRPDVIKGPGDLRAHNRRT   86 (257)
T ss_pred             EeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcCHHhHhhccCCchhHHHHHHHH
Confidence            347899999999998 599999999999999999999999999999998 7899999999987542  112223344556


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN  200 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt  200 (358)
                      ++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.   |++++|++++|..+|++|+  ++
T Consensus        87 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~ll--l~  161 (257)
T PRK06495         87 RECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMM--LT  161 (257)
T ss_pred             HHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHHHH--Hc
Confidence            678889999999999999999999999999999999999999999999999996   4567899999999999999  99


Q ss_pred             ccccccccccccchhhHhcCCceEEEecCCccHHHHHH-HHhhhccccccceecccc
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL-IVWNYNASIEMSYCGFSL  256 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l-~~~n~~~~~e~~~~gk~L  256 (358)
                      |++++|       ++|+++|||+++++..+.......+ ..+..+++......++.+
T Consensus       162 g~~~~a-------~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l  211 (257)
T PRK06495        162 GYRVPA-------AELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDAL  211 (257)
T ss_pred             CCeeCH-------HHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999       9999999999999765433333333 333334444444333333

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=1.6e-39  Score=318.85  Aligned_cols=185  Identities=23%  Similarity=0.369  Sum_probs=161.6

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH----HHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE----DQIRSFVST  119 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~----~~~~~~~~~  119 (358)
                      .+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|. |++||+|+|++++.....    .....++..
T Consensus        15 ~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~-G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~   93 (381)
T PLN02988         15 EKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSD   93 (381)
T ss_pred             EECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECC-CCCcccCcCHHHHHhhhcccchhHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999 689999999998753211    112233444


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      .+.+...+.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. .+++|+  |
T Consensus        94 ~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~--L  170 (381)
T PLN02988         94 EYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVG--L  170 (381)
T ss_pred             HHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHH--H
Confidence            4456778899999999999999999999999999999999999999999999999999999999999997 688998  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI  239 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~  239 (358)
                      ||++++|       .+|+++||++++++..+.......+.
T Consensus       171 TG~~i~a-------~eA~~~GLv~~vv~~~~l~~~~~~la  203 (381)
T PLN02988        171 TGARLDG-------AEMLACGLATHFVPSTRLTALEADLC  203 (381)
T ss_pred             cCCCCCH-------HHHHHcCCceEecCHhHHHHHHHHHH
Confidence            9999999       99999999999998755444444443

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=2e-39  Score=311.42  Aligned_cols=175  Identities=22%  Similarity=0.374  Sum_probs=159.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLRYMT  124 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~~~~l~  124 (358)
                      +++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++...   .......+...+++++
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~  117 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV  117 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence            5669999999999999999999999999999999999999999944799999999987542   2223344555567788


Q ss_pred             HHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccc
Q psy504          125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCM  204 (358)
Q Consensus       125 ~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i  204 (358)
                      .++..++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  ++|+++
T Consensus       118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~ll--ltGe~~  195 (360)
T TIGR03200       118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSG--TLCEPW  195 (360)
T ss_pred             HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHH--HhCCcC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             ccccccccchhhHhcCCceEEEecCCc
Q psy504          205 SSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       205 ~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      +|       ++|+++|||+++++..+.
T Consensus       196 sA-------~EA~~~GLVd~VVp~~~~  215 (360)
T TIGR03200       196 SA-------HKAKRLGIIMDVVPALKV  215 (360)
T ss_pred             cH-------HHHHHcCChheecCchhc
Confidence            99       999999999999986553

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-39  Score=302.98  Aligned_cols=169  Identities=21%  Similarity=0.289  Sum_probs=154.2

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++....   ...+...++.
T Consensus         5 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~---~~~~~~~~~~   80 (248)
T PRK06072          5 ESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGE-GRAFCVGADLSEFAPDF---AIDLRETFYP   80 (248)
T ss_pred             EEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhhh---HHHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999998 78999999999875321   1233445567


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|. +|++++  |+|+
T Consensus        81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~ll--l~g~  157 (248)
T PRK06072         81 IIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEIL--VLGG  157 (248)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHH--HhCC
Confidence            7888999999999999999999999999999999999999999999999999999999999999996 899999  9999


Q ss_pred             ccccccccccchhhHhcCCceEE
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTL  225 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~v  225 (358)
                      +++|       ++|+++|||+.+
T Consensus       158 ~~~a-------~eA~~~Glv~~~  173 (248)
T PRK06072        158 EFTA-------EEAERWGLLKIS  173 (248)
T ss_pred             ccCH-------HHHHHCCCcccc
Confidence            9999       999999999953

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=7.7e-39  Score=306.50  Aligned_cols=204  Identities=24%  Similarity=0.282  Sum_probs=166.0

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCC------CceecCCCchhcccc-------CH-
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK------DVFCAGADLKHRLTL-------NE-  110 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg------~~FsaG~Dl~~~~~~-------~~-  110 (358)
                      +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+      ++||+|+|++++...       .. 
T Consensus        32 ~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~  111 (302)
T PRK08321         32 DQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEA  111 (302)
T ss_pred             CCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccc
Confidence            6889999999999999999999999999999999999999999999842      699999999875321       00 


Q ss_pred             H--HHHHHH-HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEc-CCeEEeecceecccccCcccccccccc
Q psy504          111 D--QIRSFV-STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIPGAGGTQRLPRI  186 (358)
Q Consensus       111 ~--~~~~~~-~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~rias-e~a~f~~pe~~lGl~p~~g~s~~L~r~  186 (358)
                      +  ...... .....+...+..+|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~  191 (302)
T PRK08321        112 DTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQ  191 (302)
T ss_pred             cchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHH
Confidence            0  000111 112346677899999999999999999999999999999999 699999999999999999999999999


Q ss_pred             cchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504          187 VGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL  257 (358)
Q Consensus       187 iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~  257 (358)
                      +|..+|++|+  |||++++|       ++|+++|||+++++..+.......+.......++......|.++
T Consensus       192 vG~~~A~~l~--ltG~~~~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l  253 (302)
T PRK08321        192 VGQKFAREIF--FLGRTYSA-------EEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLKYAF  253 (302)
T ss_pred             hCHHHHHHHH--HcCCccCH-------HHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999  99999999       99999999999998655444444443333344444444444444

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=8.8e-39  Score=314.39  Aligned_cols=176  Identities=19%  Similarity=0.308  Sum_probs=157.7

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC--HHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQIRSFVSTLR  121 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~--~~~~~~~~~~~~  121 (358)
                      .+++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||. |++||+|+|++++....  ...........+
T Consensus        17 ~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~   95 (379)
T PLN02874         17 EKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGA-GRAFSAGGDLKMFYDGRESDDSCLEVVYRMY   95 (379)
T ss_pred             EECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCccCHHHHHhhcccchHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999998 78999999999875321  112223334445


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .+..++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +|++|+  |||
T Consensus        96 ~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~--ltG  172 (379)
T PLN02874         96 WLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLA--LTG  172 (379)
T ss_pred             HHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHH--HcC
Confidence            56778999999999999999999999999999999999999999999999999999999999999885 899999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCC
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      +++++       .+|+++|||+++++..+
T Consensus       173 ~~i~a-------~eA~~~GLv~~vv~~~~  194 (379)
T PLN02874        173 ARLNG-------KEMVACGLATHFVPSEK  194 (379)
T ss_pred             CcccH-------HHHHHcCCccEEeCHHH
Confidence            99999       99999999999997643

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-38  Score=303.78  Aligned_cols=183  Identities=25%  Similarity=0.324  Sum_probs=156.5

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-------------
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-------------  110 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-------------  110 (358)
                      .+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.....             
T Consensus        10 ~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~   88 (288)
T PRK08290         10 VAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGA-GKHFSAGHDLGSGTPGRDRDPGPDQHPTLWW   88 (288)
T ss_pred             eeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCccccCCCcccccccccccccccccccccc
Confidence            478999999999999999999999999999999999999999999999 799999999998632110             


Q ss_pred             -----H----HHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCccccc
Q psy504          111 -----D----QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQ  181 (358)
Q Consensus       111 -----~----~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~  181 (358)
                           .    ........+..++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+ |+ .+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~~-~~~~  166 (288)
T PRK08290         89 DGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-PG-VEYF  166 (288)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-Cc-chHH
Confidence                 0    01112234456778899999999999999999999999999999999999999999999998 54 4567


Q ss_pred             ccccccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          182 RLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       182 ~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      ++++++|..+|++|+  |||+.++|       ++|+++|||+++++..+.......+
T Consensus       167 ~l~~~iG~~~A~~ll--ltG~~i~A-------~eA~~~GLV~~vv~~~~l~~~a~~~  214 (288)
T PRK08290        167 AHPWELGPRKAKELL--FTGDRLTA-------DEAHRLGMVNRVVPRDELEAETLEL  214 (288)
T ss_pred             HHHHHhhHHHHHHHH--HcCCCCCH-------HHHHHCCCccEeeCHHHHHHHHHHH
Confidence            789999999999999  99999999       9999999999999764433333333

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-38  Score=303.89  Aligned_cols=201  Identities=22%  Similarity=0.253  Sum_probs=163.6

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHH------------
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED------------  111 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~------------  111 (358)
                      .+++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|. |++||+|.|++++......            
T Consensus        16 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~   94 (302)
T PRK08272         16 VTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGA-GKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQ   94 (302)
T ss_pred             eECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC-CCCcccCcCHHHHhhcccccccccccccccc
Confidence            478999999999999999999999999999999999999999999999 7999999999987532110            


Q ss_pred             -----------H--HHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcc
Q psy504          112 -----------Q--IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAG  178 (358)
Q Consensus       112 -----------~--~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g  178 (358)
                                 .  .......+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|.+|.. 
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~-  173 (302)
T PRK08272         95 AVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPAT-  173 (302)
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChH-
Confidence                       0  00224456677888999999999999999999999999999999999999999999998656643 


Q ss_pred             cccccccccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504          179 GTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL  257 (358)
Q Consensus       179 ~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~  257 (358)
                        .++++++|..+|++|+  |||++++|       ++|+++|||+++++..+......++.......++......|.++
T Consensus       174 --~~~~~~vG~~~A~~ll--ltG~~i~a-------~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l  241 (302)
T PRK08272        174 --GMWAYRLGPQRAKRLL--FTGDCITG-------AQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAV  241 (302)
T ss_pred             --HHHHHHhhHHHHHHHH--HcCCccCH-------HHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              3578899999999999  99999999       99999999999997654444444443333344444444444333

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.8e-38  Score=297.23  Aligned_cols=174  Identities=23%  Similarity=0.321  Sum_probs=153.4

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH--HHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ--IRSFVSTLR  121 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~--~~~~~~~~~  121 (358)
                      .+++|++|+||||++.|++|.+|+.+|.++++.++  +++|+|||||. |++||+|+|++++.......  .........
T Consensus        10 ~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~   86 (255)
T PRK07112         10 QQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGL-PEVFCFGADFSAIAEKPDAGRADLIDAEPLY   86 (255)
T ss_pred             eeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcC-CCCcccCcCHHHHhhccccchhhhhhHHHHH
Confidence            47899999999999999999999999999999998  46999999998 78999999999875422111  111233456


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++ +.+|++++|..+|++++  ++|
T Consensus        87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~--l~g  163 (255)
T PRK07112         87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMT--LMT  163 (255)
T ss_pred             HHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHH--HhC
Confidence            788899999999999999999999999999999999999999999999999999865 46799999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCC
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      ++++|       ++|+++|||++++++.+
T Consensus       164 ~~~~a-------~eA~~~Glv~~vv~~~~  185 (255)
T PRK07112        164 QPVTA-------QQAFSWGLVDAYGANSD  185 (255)
T ss_pred             CcccH-------HHHHHcCCCceecCcHH
Confidence            99999       99999999999997543

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-38  Score=292.29  Aligned_cols=201  Identities=14%  Similarity=0.177  Sum_probs=166.5

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+ .|++|.+|+.+|.++++.++  +++++||++|. |++||+|.|++++... .+....+.....+
T Consensus         8 ~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~-g~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~   82 (229)
T PRK06213          8 TLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQ-PGIFSGGFDLKVMTSG-AQAAIALLTAGST   82 (229)
T ss_pred             EecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCC-CCceEcCcCHHHHhcc-hHhHHHHHHHHHH
Confidence            347899999999985 79999999999999999988  56799999999 7999999999987643 2333455566778


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC-eEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      ++.++..+|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+.|++.++++++|...+++++  ++|
T Consensus        83 l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~ll--l~g  160 (229)
T PRK06213         83 LARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAV--INA  160 (229)
T ss_pred             HHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHH--HcC
Confidence            889999999999999999999999999999999999999 99999999999998888888899999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL  257 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~  257 (358)
                      ++++|       ++|+++|||+++++..+......++.......++......|.++
T Consensus       161 ~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l  209 (229)
T PRK06213        161 EMFDP-------EEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKV  209 (229)
T ss_pred             cccCH-------HHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            99999       99999999999997644333333333322233444433444433

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-38  Score=301.25  Aligned_cols=201  Identities=15%  Similarity=0.209  Sum_probs=157.3

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchh-ccc----c--CH--HHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-RLT----L--NE--DQI  113 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~-~~~----~--~~--~~~  113 (358)
                      +.+++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||||. |++||+|+|+++ +..    .  ..  ...
T Consensus        10 ~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~   88 (298)
T PRK12478         10 TTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGA-GRAFSGGYDFGGGFQHWGEAMMTDGRWDPG   88 (298)
T ss_pred             eccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCccccccccchhcccccccCch
Confidence            4579999999999999999999999999999999999999999999999 799999999986 211    0  00  001


Q ss_pred             HHH---HH---HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceec-ccccCcccccccccc
Q psy504          114 RSF---VS---TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKL-AIIPGAGGTQRLPRI  186 (358)
Q Consensus       114 ~~~---~~---~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~l-Gl~p~~g~s~~L~r~  186 (358)
                      ..+   ..   ....++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++ |+++  ++++  .++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~--~~~  164 (298)
T PRK12478         89 KDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW--LYR  164 (298)
T ss_pred             hhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH--HHH
Confidence            111   01   11235667899999999999999999999999999999999999999999997 8875  3333  356


Q ss_pred             cchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504          187 VGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL  257 (358)
Q Consensus       187 iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~  257 (358)
                      +|..+|++|+  |||++++|       ++|+++|||+++++..+.......+.......++......|.++
T Consensus       165 vG~~~A~~ll--ltg~~i~A-------~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l  226 (298)
T PRK12478        165 LSLAKVKWHS--LTGRPLTG-------VQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIV  226 (298)
T ss_pred             hhHHHHHHHH--HcCCccCH-------HHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999  99999999       99999999999998655444444333322333443333334333

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=1.7e-37  Score=315.62  Aligned_cols=246  Identities=17%  Similarity=0.183  Sum_probs=191.2

Q ss_pred             CcCccccccCCCCCcccccCCCcceeEEEEeeeecCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHH
Q psy504           11 SPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQAR-------------NALNATLVEEILTAVEAI   77 (358)
Q Consensus        11 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~V~~Itlnrp~~~-------------Nal~~~m~~eL~~~l~~~   77 (358)
                      .|...|.+......++....+..+.+..+.+ +++++|++||||||+++             |+|+.+|+.+|.+++..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~  310 (546)
T TIGR03222       232 RPADAKGVQLTPLERTIDEDGVRYPTVDVAI-DRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHL  310 (546)
T ss_pred             CCcCCCceeeeehhhhcccCCcceeeEEEEE-eccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHH
Confidence            4667777888877777777766555544443 45789999999999999             999999999999999999


Q ss_pred             H-cCCCceEEEEeecCCCc-eecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee-ccccccCC-ceeeccc
Q psy504           78 R-GDEEVRCVLLRSLVKDV-FCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL-DGSAYGGG-LEMALAC  153 (358)
Q Consensus        78 ~-~d~~vrvVVltg~gg~~-FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav-nG~a~GgG-~~lal~c  153 (358)
                      + +|++||+|||||. |+. ||+|+|++.................++++.++..+|||+||+| ||+|+||| ++|+++|
T Consensus       311 ~~~d~~vr~vVl~g~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalac  389 (546)
T TIGR03222       311 RTNELDIGLWVFRTQ-GDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAA  389 (546)
T ss_pred             hhCCCCeEEEEEEcC-CCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhC
Confidence            8 4599999999998 666 9999999843321211122333445668889999999999999 89999999 9999999


Q ss_pred             cEEEE-------cCCeEEeecceecccccCccccccccccc-chhhH--HhhhhhhcccccccccccccchhhHhcCCce
Q psy504          154 DIRVA-------ASNVRMGLVETKLAIIPGAGGTQRLPRIV-GIPLA--ALYEDLLNNDCMSSLDTRYMWCTPYRRGLVV  223 (358)
Q Consensus       154 D~ria-------se~a~f~~pe~~lGl~p~~g~s~~L~r~i-G~~~A--~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~  223 (358)
                      |+|||       +++++|++||+++|++|++|++++|++++ |..+|  ++++  +||++++|       ++|+++|||+
T Consensus       390 D~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~--ltg~~i~A-------~eA~~~Glv~  460 (546)
T TIGR03222       390 DRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRD--KIGQALDA-------EEAERLGLVT  460 (546)
T ss_pred             ceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHH--HhCCCCCH-------HHHHHcCCcc
Confidence            99999       89999999999999999999999999998 99999  5588  99999999       9999999999


Q ss_pred             EEEecCCccHHHHHHHHh-hhccccccceecccccccCcchhhcc
Q psy504          224 TLVIKFSQPVHISALIVW-NYNASIEMSYCGFSLLNTWGDRYYLG  267 (358)
Q Consensus       224 ~vv~~~~~~~~~~~l~~~-n~~~~~e~~~~gk~L~~~~g~~~~~g  267 (358)
                      ++++..+.......+... ..+++......+..+...+......+
T Consensus       461 ~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~  505 (546)
T TIGR03222       461 AAPDDIDWEDEIRIALEERASFSPDALTGLEANLRFAGPETMETR  505 (546)
T ss_pred             cccCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcChhhh
Confidence            999775543333333222 22344344434444444444444443

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=2.8e-37  Score=325.74  Aligned_cols=180  Identities=34%  Similarity=0.536  Sum_probs=163.9

Q ss_pred             eeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHH
Q psy504           41 NSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFV  117 (358)
Q Consensus        41 l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~  117 (358)
                      ++..+++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++...   .......+.
T Consensus        10 ~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   88 (715)
T PRK11730         10 VDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSA-KDAFIVGADITEFLSLFAAPEEELSQWL   88 (715)
T ss_pred             EEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECC-CCccccCcCHHHHhhhccCCHHHHHHHH
Confidence            333478999999999999999999999999999999999999999999999 7899999999987542   222234555


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      ...++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+ 
T Consensus        89 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ll-  167 (715)
T PRK11730         89 HFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWI-  167 (715)
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHH-
Confidence            6667788999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                       +||++++|       ++|+++|||+++++..+
T Consensus       168 -ltG~~~~A-------~eA~~~GLv~~vv~~~~  192 (715)
T PRK11730        168 -AAGKDVRA-------EDALKVGAVDAVVAPEK  192 (715)
T ss_pred             -HcCCcCCH-------HHHHHCCCCeEecCHHH
Confidence             99999999       99999999999997644

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=4.6e-37  Score=284.97  Aligned_cols=173  Identities=20%  Similarity=0.287  Sum_probs=151.3

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCce-EEEEeecCCCceecCCCchhcccc--CHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVR-CVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSFVSTL  120 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr-vVVltg~gg~~FsaG~Dl~~~~~~--~~~~~~~~~~~~  120 (358)
                      .+++|++|+||||++ |+|+.+|+.+|.+++++++.|++++ +||++|. |++||+|+|++++...  .......+...+
T Consensus         6 ~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~   83 (239)
T PLN02267          6 KRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAE-GKFFSNGFDLAWAQAAGSAPSRLHLMVAKL   83 (239)
T ss_pred             ecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCC-CCceeCCcCHHHHhccccCHHHHHHHHHHH
Confidence            478999999999985 9999999999999999999999875 6777887 7899999999986532  122223344566


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEc-CCeEEeecceecccc-cCcccccccccccchhhH-Hhhhh
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAII-PGAGGTQRLPRIVGIPLA-ALYED  197 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~rias-e~a~f~~pe~~lGl~-p~~g~s~~L~r~iG~~~A-~~ll~  197 (358)
                      .+++.++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++ |++ ++.+|++++|..+| ++++ 
T Consensus        84 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~~~a~~~ll-  161 (239)
T PLN02267         84 RPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGSPAARRDVL-  161 (239)
T ss_pred             HHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcChHHHHHHHH-
Confidence            778889999999999999999999999999999999998 578999999999997 555 47899999999999 6898 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEec
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                       ++|++++|       ++|+++|+|+++++.
T Consensus       162 -ltG~~~~a-------~eA~~~Glv~~vv~~  184 (239)
T PLN02267        162 -LRAAKLTA-------EEAVEMGIVDSAHDS  184 (239)
T ss_pred             -HcCCcCCH-------HHHHHCCCcceecCC
Confidence             99999999       999999999999974

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=4.3e-37  Score=313.59  Aligned_cols=248  Identities=15%  Similarity=0.127  Sum_probs=193.5

Q ss_pred             CcCccccccCCCCCcccccCCCcceeEEEEeeeecCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHH
Q psy504           11 SPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQAR-------------NALNATLVEEILTAVEAI   77 (358)
Q Consensus        11 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~V~~Itlnrp~~~-------------Nal~~~m~~eL~~~l~~~   77 (358)
                      .|.+.|.+...+..++....|-.+....+.+ +.+++|++||||||+++             |+|+.+|+.+|.++++.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~  314 (550)
T PRK08184        236 RPADAKGVALTPLERTIDADGLRYRHVDVEI-DRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHL  314 (550)
T ss_pred             CCCCCCccccccccccccCCceeeEEEEEEE-EccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHH
Confidence            4566788888999999888886554444443 34789999999999988             689999999999999999


Q ss_pred             Hc-CCCceEEEEeecCC-CceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec-cccccCC-ceeeccc
Q psy504           78 RG-DEEVRCVLLRSLVK-DVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD-GSAYGGG-LEMALAC  153 (358)
Q Consensus        78 ~~-d~~vrvVVltg~gg-~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn-G~a~GgG-~~lal~c  153 (358)
                      +. |+++|+|||||. | ++||+|+|++.................+.++.++..+|||+||+|| |+|+||| ++|+++|
T Consensus       315 ~~~d~~vr~vVltg~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalac  393 (550)
T PRK08184        315 RTNELDIGTWVLKTE-GDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAA  393 (550)
T ss_pred             HhcCCCeEEEEEEcC-CCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHC
Confidence            86 799999999998 6 5999999987432211111123334456678899999999999997 9999999 9999999


Q ss_pred             cEEEEc-------CCeEEeecceecccccCcccccccccc-cchhhHHhhhhhhcccccccccccccchhhHhcCCceEE
Q psy504          154 DIRVAA-------SNVRMGLVETKLAIIPGAGGTQRLPRI-VGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTL  225 (358)
Q Consensus       154 D~rias-------e~a~f~~pe~~lGl~p~~g~s~~L~r~-iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~v  225 (358)
                      |+|||+       ++++|++||+++|++|++|++++|+|+ +|..+|++++.+++|++++|       ++|+++|||+++
T Consensus       394 D~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A-------~eA~~~GLv~~v  466 (550)
T PRK08184        394 DRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDA-------DAAEELGLVTAA  466 (550)
T ss_pred             ChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCH-------HHHHHcCCcccc
Confidence            999999       999999999999999999999999998 79999999732389999999       999999999999


Q ss_pred             EecCCccHHHHHHHHh-hhccccccceecccccccCcchhhcc
Q psy504          226 VIKFSQPVHISALIVW-NYNASIEMSYCGFSLLNTWGDRYYLG  267 (358)
Q Consensus       226 v~~~~~~~~~~~l~~~-n~~~~~e~~~~gk~L~~~~g~~~~~g  267 (358)
                      +++.+.......+... ..+++......+..+...+......+
T Consensus       467 v~~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~  509 (550)
T PRK08184        467 PDDIDWEDEVRIALEERASLSPDALTGMEANLRFAGPETMETR  509 (550)
T ss_pred             cChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Confidence            9875543333333322 23444444444555555554444444

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=1.2e-36  Score=320.61  Aligned_cols=181  Identities=32%  Similarity=0.505  Sum_probs=164.6

Q ss_pred             EeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHH
Q psy504           40 HNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSF  116 (358)
Q Consensus        40 ~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~  116 (358)
                      .++..+++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||||. +++||+|+|++++...   ...+...+
T Consensus         9 ~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~   87 (714)
T TIGR02437         9 QVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQW   87 (714)
T ss_pred             EEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCccccCcCHHHHhhcccCCHHHHHHH
Confidence            3444578999999999999999999999999999999999999999999998 7899999999988542   22233345


Q ss_pred             HHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhh
Q psy504          117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE  196 (358)
Q Consensus       117 ~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll  196 (358)
                      .+..++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+
T Consensus        88 ~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ll  167 (714)
T TIGR02437        88 LLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWI  167 (714)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            55677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                        ++|++++|       ++|+++|||+++++..+
T Consensus       168 --ltG~~~~A-------~eA~~~GLvd~vv~~~~  192 (714)
T TIGR02437       168 --ASGKENRA-------EDALKVGAVDAVVTADK  192 (714)
T ss_pred             --HcCCcCCH-------HHHHHCCCCcEeeChhH
Confidence              99999999       99999999999997543

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=2.6e-36  Score=270.67  Aligned_cols=176  Identities=41%  Similarity=0.703  Sum_probs=166.3

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH--HHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ--IRSFVSTL  120 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~--~~~~~~~~  120 (358)
                      +++++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||||. ++.||+|.|++++.......  ...+.+.+
T Consensus         4 ~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~   82 (195)
T cd06558           4 ERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIREL   82 (195)
T ss_pred             EEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhcccccchhHHHHHHHH
Confidence            4567999999999999999999999999999999999999999999998 89999999999987765443  56788888


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN  200 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt  200 (358)
                      ++++.++..++||+||++||+|.|+|++++++||+||++++++|++||+++|++|+.|++++|++++|...+++++  ++
T Consensus        83 ~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~--l~  160 (195)
T cd06558          83 QELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL--LT  160 (195)
T ss_pred             HHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH--Hc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             ccccccccccccchhhHhcCCceEEEec
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                      |+++++       .+|++.|+++++++.
T Consensus       161 g~~~~a-------~ea~~~Glv~~~~~~  181 (195)
T cd06558         161 GRRISA-------EEALELGLVDEVVPD  181 (195)
T ss_pred             CCccCH-------HHHHHcCCCCeecCh
Confidence            999999       999999999999986

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>KOG1681|consensus

Probab=100.00  E-value=6e-37  Score=271.54  Aligned_cols=223  Identities=22%  Similarity=0.363  Sum_probs=182.6

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC------------H
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN------------E  110 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~------------~  110 (358)
                      ..++.|..+.||||.|+|+|+..|+.|+.++++.+.+||++|+|||.|. |+.||+|+|+..+....            .
T Consensus        27 ~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~-GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g  105 (292)
T KOG1681|consen   27 SAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGA-GKHFCAGIDLNDMASDRILQPEGDDVARKG  105 (292)
T ss_pred             CCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecC-CcceecccCcchhhhhhccccccchHhhhh
Confidence            4567799999999999999999999999999999999999999999999 89999999987664320            1


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccc-h
Q psy504          111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG-I  189 (358)
Q Consensus       111 ~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG-~  189 (358)
                      ...++.+..+++-+..|.+||||+|++|+|+|+|+|+.|..+||+|||+++|.|+.-|+.+|+..+.|...+||..+| .
T Consensus       106 ~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~  185 (292)
T KOG1681|consen  106 RSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQ  185 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcch
Confidence            125567778889999999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             hhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCcc-HHHHHHHH-hhhccccccceecccccccCcchhhcc
Q psy504          190 PLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQP-VHISALIV-WNYNASIEMSYCGFSLLNTWGDRYYLG  267 (358)
Q Consensus       190 ~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~-~~~~~l~~-~n~~~~~e~~~~gk~L~~~~g~~~~~g  267 (358)
                      +.++++.  +|++.|+|       .||++.|||++|+++.++- .....+.. ...+.++...-++..|..........+
T Consensus       186 s~~~ela--fTar~f~a-------~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~s  256 (292)
T KOG1681|consen  186 SLARELA--FTARKFSA-------DEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTKENLLYSREHSVEES  256 (292)
T ss_pred             HHHHHHH--hhhhhcch-------hhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhhhhh
Confidence            9999999  99999999       8999999999999874422 11112221 123444444434445555555555555


Q ss_pred             ccchhhhh
Q psy504          268 LNGIELYD  275 (358)
Q Consensus       268 ln~~El~~  275 (358)
                      ||..-..|
T Consensus       257 LnyvatwN  264 (292)
T KOG1681|consen  257 LNYVATWN  264 (292)
T ss_pred             HHHHHHHH
Confidence            55544444

>KOG0016|consensus

Probab=100.00  E-value=2.4e-36  Score=273.36  Aligned_cols=225  Identities=23%  Similarity=0.246  Sum_probs=197.6

Q ss_pred             eeeecCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH-------
Q psy504           41 NSPERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ-------  112 (358)
Q Consensus        41 l~~~~~~V~~Itln-rp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~-------  112 (358)
                      +.++++++.+|.+| ||++.|+++.+|+.++.++++.+.+|+++..++++|. |++||+|.|++.+......+       
T Consensus        10 vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~-G~~f~sG~Df~~~~~~~~~d~~~~~~~   88 (266)
T KOG0016|consen   10 VVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSN-GSYFCSGLDFSPFAKALDDDANEESDK   88 (266)
T ss_pred             EEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecC-ccEEeeccccchhhhcCCCcccccchh
Confidence            44558999999999 9999999999999999999999999999999999998 89999999999886543322       


Q ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhH
Q psy504          113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA  192 (358)
Q Consensus       113 ~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A  192 (358)
                      ...+...+......+..+|||+||.|||+|+|.|+.+...||+++|+|+++|..|++.+|+.|++|++++||+++|...|
T Consensus        89 ~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A  168 (266)
T KOG0016|consen   89 ASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASA  168 (266)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhH
Confidence            22233444457889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccccCcchhhccccchh
Q psy504          193 ALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIE  272 (358)
Q Consensus       193 ~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~~~g~~~~~gln~~E  272 (358)
                      .||+  |.|++++|       .||++.|||+++++.......+....+.....++++....|.|++..-...+...|..|
T Consensus       169 ~E~l--l~~~kltA-------~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E  239 (266)
T KOG0016|consen  169 NEML--LFGEKLTA-------QEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEE  239 (266)
T ss_pred             HHHH--HhCCcccH-------HHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999  99999999       99999999999998866656555555555667788888899999888788888888888


Q ss_pred             hhh
Q psy504          273 LYD  275 (358)
Q Consensus       273 l~~  275 (358)
                      +--
T Consensus       240 ~~~  242 (266)
T KOG0016|consen  240 CNV  242 (266)
T ss_pred             HHH
Confidence            755

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=5.7e-36  Score=315.76  Aligned_cols=181  Identities=30%  Similarity=0.538  Sum_probs=162.3

Q ss_pred             eeeecCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC-HHHHHHHHH
Q psy504           41 NSPERPGIVELCMNRP-QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVS  118 (358)
Q Consensus        41 l~~~~~~V~~Itlnrp-~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~-~~~~~~~~~  118 (358)
                      ++..+++|++|+|||| ++.|+||.+|+.+|.+++++++.|+++|+|||+|.++++||+|+|++++.... ......+..
T Consensus         9 ~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~   88 (708)
T PRK11154          9 LNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALAR   88 (708)
T ss_pred             EEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHH
Confidence            3444789999999999 68999999999999999999999999999999997668999999999875432 222334445


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC--eEEeecceecccccCcccccccccccchhhHHhhh
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE  196 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~--a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll  196 (358)
                      ..++++.++.++|||+||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..+|++|+
T Consensus        89 ~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~ll  168 (708)
T PRK11154         89 QGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMI  168 (708)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHH
Confidence            5677889999999999999999999999999999999999986  59999999999999999999999999999999999


Q ss_pred             hhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                        ++|++++|       ++|+++|||+++++..+
T Consensus       169 --ltG~~i~a-------~eA~~~GLv~~vv~~~~  193 (708)
T PRK11154        169 --LTGKQLRA-------KQALKLGLVDDVVPHSI  193 (708)
T ss_pred             --HhCCcCCH-------HHHHHCCCCcEecChHH
Confidence              99999999       99999999999997644

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=1.2e-35  Score=312.73  Aligned_cols=179  Identities=31%  Similarity=0.566  Sum_probs=160.9

Q ss_pred             eeecCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEe-ecCCCceecCCCchhccccC-HHHHHHHHH
Q psy504           42 SPERPGIVELCMNRP-QARNALNATLVEEILTAVEAIRGDEEVRCVLLR-SLVKDVFCAGADLKHRLTLN-EDQIRSFVS  118 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp-~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVlt-g~gg~~FsaG~Dl~~~~~~~-~~~~~~~~~  118 (358)
                      +..+++|++|||||| ++.|+||.+|+.+|.+++++++.|+++|+|||+ |. |++||+|+|++++.... ..+...+..
T Consensus         5 ~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~   83 (699)
T TIGR02440         5 TVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGK-PDNFIAGADISMLAACQTAGEAKALAQ   83 (699)
T ss_pred             EEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCceeeccCchhhhccCChhHHHHHHH
Confidence            445789999999999 689999999999999999999999999999975 55 78999999999875422 223334455


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC--eEEeecceecccccCcccccccccccchhhHHhhh
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE  196 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~--a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll  196 (358)
                      ..+.++..+.++|||+||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|+|++|..+|++|+
T Consensus        84 ~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~ll  163 (699)
T TIGR02440        84 QGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMI  163 (699)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHH
Confidence            6677888999999999999999999999999999999999976  79999999999999999999999999999999999


Q ss_pred             hhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                        ++|+.++|       ++|+++|||+++++..+
T Consensus       164 --ltG~~~~a-------~eA~~~GLV~~vv~~~~  188 (699)
T TIGR02440       164 --LTGKQLRA-------KQALKLGLVDDVVPQSI  188 (699)
T ss_pred             --HcCCcCCH-------HHHHhCCCCcEecChhH
Confidence              99999999       99999999999997644

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=1.9e-35  Score=312.13  Aligned_cols=175  Identities=29%  Similarity=0.506  Sum_probs=159.4

Q ss_pred             ecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEE-EEeecCCCceecCCCchhcccc-CHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCV-LLRSLVKDVFCAGADLKHRLTL-NEDQIRSFVSTL  120 (358)
Q Consensus        44 ~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvV-Vltg~gg~~FsaG~Dl~~~~~~-~~~~~~~~~~~~  120 (358)
                      .+++|++|+||||+ +.|+||.+|+.+|.++++.++.|+++|++ |++|. |++||+|+|++++... ..++...+....
T Consensus        19 ~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   97 (737)
T TIGR02441        19 VKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGK-PGSFVAGADIQMIAACKTAQEVTQLSQEG   97 (737)
T ss_pred             EECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECC-CCcceeCcCHHHHhccCChHHHHHHHHHH
Confidence            37899999999998 58999999999999999999999999975 56888 7899999999998642 223344555667


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC--eEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~--a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      ++++.++.++|||+||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|+|++|..+|++|+  
T Consensus        98 ~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~--  175 (737)
T TIGR02441        98 QEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMM--  175 (737)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHH--
Confidence            78899999999999999999999999999999999999987  58999999999999999999999999999999999  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEec
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                      ++|++++|       ++|+++|||+++++.
T Consensus       176 ltG~~i~a-------~eA~~~GLVd~vv~~  198 (737)
T TIGR02441       176 LTGKKIRA-------DRAKKMGIVDQLVDP  198 (737)
T ss_pred             HcCCcCCH-------HHHHHCCCCeEecCC
Confidence            99999999       999999999999975

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=9.5e-35  Score=295.55  Aligned_cols=182  Identities=25%  Similarity=0.310  Sum_probs=155.3

Q ss_pred             ecCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHH-cCCCceEEEEeecCCCceecCCCchhccccCHHH
Q psy504           44 ERPGIVELCMNRPQ----------ARNALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ  112 (358)
Q Consensus        44 ~~~~V~~Itlnrp~----------~~Nal~~~m~~eL~~~l~~~~-~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~  112 (358)
                      .+++|++|+||||+          ++|+||.+|+.+|.++++.++ .|+++|+|||||.+|++||+|.|++++.......
T Consensus        17 ~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~   96 (546)
T TIGR03222        17 FDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAW   96 (546)
T ss_pred             eeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccch
Confidence            46889999999975          899999999999999999999 7999999999997678999999999875321111


Q ss_pred             HH---HHH-HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC--eEEeeccee-cccccCcccccccc-
Q psy504          113 IR---SFV-STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETK-LAIIPGAGGTQRLP-  184 (358)
Q Consensus       113 ~~---~~~-~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~--a~f~~pe~~-lGl~p~~g~s~~L~-  184 (358)
                      ..   ... .....+...+..+|||+||+|||+|+|||++|+++||+||++++  ++|++||++ +|++|++|++.+++ 
T Consensus        97 ~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~  176 (546)
T TIGR03222        97 KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTD  176 (546)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccc
Confidence            11   111 11233556778999999999999999999999999999999986  799999997 99999999999998 


Q ss_pred             -cccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHH
Q psy504          185 -RIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH  234 (358)
Q Consensus       185 -r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~  234 (358)
                       +++|..+|++|+  |+|++++|       ++|+++|||+++++..+....
T Consensus       177 ~~~vg~~~A~~ll--ltG~~i~A-------~eA~~~GLV~~vv~~~~l~~~  218 (546)
T TIGR03222       177 KRRVRRDHADIFC--TIEEGVRG-------KRAKEWRLVDEVVKPSQFDAA  218 (546)
T ss_pred             cchhCHHHHHHHH--HcCCCccH-------HHHHHcCCceEEeChHHHHHH
Confidence             689999999999  99999999       999999999999986544333

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>KOG1684|consensus

Probab=100.00  E-value=1.9e-34  Score=270.83  Aligned_cols=257  Identities=21%  Similarity=0.296  Sum_probs=215.5

Q ss_pred             EEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc----CHHHHH
Q psy504           39 YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL----NEDQIR  114 (358)
Q Consensus        39 ~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~----~~~~~~  114 (358)
                      ..+.+..+...+||||||+.+||+|.+|...+.-.+..++.++.+++||+.|.++++||+|+|++.....    ......
T Consensus        39 ~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~  118 (401)
T KOG1684|consen   39 QVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVK  118 (401)
T ss_pred             ceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHH
Confidence            3455567889999999999999999999999999999999999999999999999999999999865433    234567


Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHh
Q psy504          115 SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAAL  194 (358)
Q Consensus       115 ~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~  194 (358)
                      .++...+.+...+.++.||.||.++|..+|||+.|+.+.-||||+|++.|.+||+.+|++|+.|++++|+|+.| ..+.+
T Consensus       119 ~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~Y  197 (401)
T KOG1684|consen  119 KFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLY  197 (401)
T ss_pred             HHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999988 77888


Q ss_pred             hhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccccCcchhhccccchhhh
Q psy504          195 YEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELY  274 (358)
Q Consensus       195 ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~~~g~~~~~gln~~El~  274 (358)
                      +.  |||.++++       .+|+..||.++.|+....+.-..++.+ +.+.+++..                   -.|..
T Consensus       198 Lg--LTG~rl~G-------aD~~~~GlATHyv~S~~l~~Lee~L~~-~l~~dp~~~-------------------I~~~l  248 (401)
T KOG1684|consen  198 LG--LTGQRLSG-------ADALRCGLATHYVPSEKLPSLEERLLK-NLNDDPQSV-------------------INETL  248 (401)
T ss_pred             hh--hccceecc-------hHHHHhcchhhccchhhhhHHHHHHhh-hcCCCcHHH-------------------HHHHH
Confidence            88  99999999       899999999999998888777777763 444444211                   12556


Q ss_pred             hhcCCcccccccccccCCcccccccCCCCCccChhhhcccc---cccCCCCCeeecccC
Q psy504          275 DEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGV---NNIADGTHSWLAPIL  330 (358)
Q Consensus       275 ~~~~~~~~~~~~~~~a~~~~~n~~~~~~~d~r~~~~l~~~~---~~t~~~~~~wl~p~~  330 (358)
                      .++++..+-........++-||.    |+...|++++|+.+   +. ..+...|.--.+
T Consensus       249 ~~y~~~~~~~~~~~~~~~~~i~~----~Fs~~tVeeIie~lk~~q~-~~~~~ewak~tl  302 (401)
T KOG1684|consen  249 EKYASPAKDESFSLSLKLDVINK----CFSANTVEEIIEALKNYQQ-SADGSEWAKETL  302 (401)
T ss_pred             HHhcccCCCccccchhhHHHHHH----hhccccHHHHHHHHHHHhh-hhhHHHHHHHHH
Confidence            66666554444555556777777    88888999999944   33 455667765544

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=5.6e-34  Score=290.75  Aligned_cols=178  Identities=25%  Similarity=0.330  Sum_probs=152.7

Q ss_pred             ecCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHH-cCCCceEEEEeecCCCceecCCCchhccccCHHH
Q psy504           44 ERPGIVELCMNRP-------Q---ARNALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ  112 (358)
Q Consensus        44 ~~~~V~~Itlnrp-------~---~~Nal~~~m~~eL~~~l~~~~-~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~  112 (358)
                      .+++|++|+||||       +   +.|+|+.+|+.+|.+++++++ +|+++|+|||||.++++||+|.|++++.....+.
T Consensus        21 ~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~  100 (550)
T PRK08184         21 FDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAW  100 (550)
T ss_pred             eeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccch
Confidence            3689999999965       3   899999999999999999999 7899999999998668999999999875422111


Q ss_pred             HH---HHHHH-HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC--eEEeeccee-cccccCcccccccc-
Q psy504          113 IR---SFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETK-LAIIPGAGGTQRLP-  184 (358)
Q Consensus       113 ~~---~~~~~-~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~--a~f~~pe~~-lGl~p~~g~s~~L~-  184 (358)
                      ..   ..... ...+...+..+|||+||+|||+|+|||++|+++||+||++++  ++|++||++ +|++|++|++++|+ 
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~  180 (550)
T PRK08184        101 KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTD  180 (550)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhh
Confidence            11   11111 122455778999999999999999999999999999999987  899999997 99999999999998 


Q ss_pred             -cccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          185 -RIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       185 -r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                       +++|..+|++++  ++|+.++|       ++|+++|||+++++..+
T Consensus       181 ~~~vg~~~A~~ll--ltG~~i~A-------eeA~~~GLVd~vv~~d~  218 (550)
T PRK08184        181 KRKVRRDLADIFC--TIEEGVRG-------KRAVDWRLVDEVVKPSK  218 (550)
T ss_pred             hhhcCHHHHHHHH--HhCCcccH-------HHHHHcCCccEeeCHHH
Confidence             779999999999  99999999       99999999999997643

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=99.97  E-value=6.2e-32  Score=238.06  Aligned_cols=196  Identities=27%  Similarity=0.383  Sum_probs=163.6

Q ss_pred             eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeec--CCCceecCCCchhcccc----CHHHHHH
Q psy504           42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL--VKDVFCAGADLKHRLTL----NEDQIRS  115 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~--gg~~FsaG~Dl~~~~~~----~~~~~~~  115 (358)
                      +...++|+.|++|||+++|++.+..+.||.+++..+..|++|.+|+|||.  |+.+||+|+|-+.-...    .++... 
T Consensus        23 ~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~-  101 (282)
T COG0447          23 EKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIP-  101 (282)
T ss_pred             eeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCc-
Confidence            33347999999999999999999999999999999999999999999975  78999999998754331    111111 


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhh
Q psy504          116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALY  195 (358)
Q Consensus       116 ~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~l  195 (358)
                       .-....+.+.|+.+||||||.|+|+|+|||-.|-+.||+.||+++|+|+....++|-+-++.++..|.|.+|..+|+|+
T Consensus       102 -rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEI  180 (282)
T COG0447         102 -RLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREI  180 (282)
T ss_pred             -ccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHh
Confidence             1134456678899999999999999999999999999999999999999999999999888888999999999999999


Q ss_pred             hhhhcccccccccccccchhhHhcCCceEEEecCCccHH-HHHHHHhhhccccc
Q psy504          196 EDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH-ISALIVWNYNASIE  248 (358)
Q Consensus       196 l~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~-~~~l~~~n~~~~~e  248 (358)
                      -  +.++..+|       ++|+++|+|+.||+..+...+ +...+..+.+++..
T Consensus       181 w--fLcR~Y~A-------~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~A  225 (282)
T COG0447         181 W--FLCRQYDA-------EEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTA  225 (282)
T ss_pred             h--hhhhhccH-------HHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHH
Confidence            8  99999999       999999999999987654433 33333333344433

>KOG1682|consensus

Probab=99.96  E-value=1.9e-29  Score=220.37  Aligned_cols=184  Identities=23%  Similarity=0.355  Sum_probs=165.9

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLRY  122 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~~  122 (358)
                      .+++|-.|+|++|+++|.|+.+|+.+|.+.+....++.++|+|||+.. |+.||+|.||+++.+... +...+.++...+
T Consensus        38 ~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~-GkifSaGH~LKELt~e~g~d~haevFqtc~d  116 (287)
T KOG1682|consen   38 EHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQ-GKIFSAGHNLKELTNEPGSDIHAEVFQTCTD  116 (287)
T ss_pred             cccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecC-CccccccccHHHhhcCccchHHHHHHHHHHH
Confidence            358999999999999999999999999999999999999999999999 899999999999987543 234566778888


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.-|+++|+|+|+-|||+|.++||.|...||++||+++++|..|...+|++...-| ..|.|.+++..|.+|+  +||.
T Consensus       117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~ML--~Tg~  193 (287)
T KOG1682|consen  117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYML--MTGL  193 (287)
T ss_pred             HHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchhHHHHHH--HhCC
Confidence            999999999999999999999999999999999999999999999999999876544 4688999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      ++++       ++|+..||++++|+..+...++..+
T Consensus       194 Pi~~-------eeAl~sGlvskvVp~~el~~e~~~i  222 (287)
T KOG1682|consen  194 PITG-------EEALISGLVSKVVPAEELDKEIEEI  222 (287)
T ss_pred             CCch-------HHHHHhhhhhhcCCHHHHHHHHHHH
Confidence            9999       9999999999999987665554444

>PF14652 DUF4457: Domain of unknown function (DUF4457)

Probab=99.94  E-value=6.5e-28  Score=232.74  Aligned_cols=156  Identities=42%  Similarity=0.733  Sum_probs=139.1

Q ss_pred             chhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecc-------------
Q psy504          188 GIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGF-------------  254 (358)
Q Consensus       188 G~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk-------------  254 (358)
                      +..+...-|  +-|..++. ++.|||..++..|.-+.++..+..+..++++++||||++.+.++.|.             
T Consensus        51 ~d~r~l~~L--idg~~~T~-d~~~MWl~pf~~~~~~~i~i~f~~~~~is~iRIWNYNks~~ds~~GvK~v~I~ldg~~i~  127 (329)
T PF14652_consen   51 DDPRTLDKL--IDGVNLTT-DDEHMWLAPFSPGKQHVITIRFPEPTSISGIRIWNYNKSREDSYRGVKDVKIYLDGKLIF  127 (329)
T ss_pred             CCccceeEE--ECCeEccC-cccceEEeecCCCCCEEEEEEeCCCceeeEEEEEcCCCCcchhhcCeEEEEEEECCEEee
Confidence            333444444  77887775 89999999999999999999999999999999999999976554221             


Q ss_pred             ------------------------------------------------------------------cccccCcchhhccc
Q psy504          255 ------------------------------------------------------------------SLLNTWGDRYYLGL  268 (358)
Q Consensus       255 ------------------------------------------------------------------~L~~~~g~~~~~gl  268 (358)
                                                                                        .++++||+++|+||
T Consensus       128 ~~~~~~irkapG~~~~D~~q~I~f~~~~k~~~~sks~~~~~~~~s~~~~~~~~~~~~~p~g~~l~~~ilStWGd~~yvGL  207 (329)
T PF14652_consen  128 PGEGFLIRKAPGNCHFDFGQTILFTDQDKISENSKSPSLISNVNSEEQASQDYEIPELPCGFVLQIEILSTWGDPHYVGL  207 (329)
T ss_pred             cccceEEeeccccCccccccEEEeecccccccccccccccccccccccccccccccccccceEEEEEEeeccCCcceecc
Confidence                                                                              48899999999999


Q ss_pred             cchhhhhhcCCcccccccccccCCcccccccCCCCCccChhhhcccccccCCCCCeeecccCcccccccCccEEEeeh
Q psy504          269 NGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPILPQEMFKANGFVLVILK  346 (358)
Q Consensus       269 n~~El~~~~~~~~~~~~~~~~a~~~~~n~~~~~~~d~r~~~~l~~~~~~t~~~~~~wl~p~~~~~~~~~~~~~~~~~~  346 (358)
                      ||+|+||++|++|+++..+|.|+|+|||+||+++.|+||++|||||+|+|+|+.|||||||+|+...+-+.+.+|+.-
T Consensus       208 ngiElfD~~g~~i~~~~~~i~a~p~~v~~l~~~~~d~r~~~~Li~~~~~t~d~~~~Wlap~~~~~~~~~~~~~i~~~f  285 (329)
T PF14652_consen  208 NGIELFDENGERIKISPNNITAFPPSVNVLPGYTDDPRTPDKLIDGVNNTCDDRHMWLAPFLPGLNDNEQPNVIYFIF  285 (329)
T ss_pred             cceEEEcCCCCEEeechhheeccCcccccCcccccCccchhhcccCccCCCCcccceeccccCCccccccccEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999988888888888764

>PF14652 DUF4457: Domain of unknown function (DUF4457)

Probab=99.74  E-value=3.5e-19  Score=172.08  Aligned_cols=79  Identities=48%  Similarity=0.853  Sum_probs=76.4

Q ss_pred             cccccCcchhhccccchhhhhhcCCcccccccccccCCcccccccCCCCCccChhhhcccccccCCCCCeeecccCccc
Q psy504          255 SLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPILPQE  333 (358)
Q Consensus       255 ~L~~~~g~~~~~gln~~El~~~~~~~~~~~~~~~~a~~~~~n~~~~~~~d~r~~~~l~~~~~~t~~~~~~wl~p~~~~~  333 (358)
                      .|+++||+++|.||+|+|++|.+|+.||++.++|.|.|+|+|++|+|.+|+||++||+||+|.|+|+.||||+||.|+.
T Consensus         3 ~llsnWG~~~~iGLTgie~~d~~~~~i~i~~~~i~~~p~Din~~p~~~~d~r~l~~Lidg~~~T~d~~~MWl~pf~~~~   81 (329)
T PF14652_consen    3 ELLSNWGDPHYIGLTGIEVLDKNGQKIPISPSQISASPRDINDLPGYSDDPRTLDKLIDGVNLTTDDEHMWLAPFSPGK   81 (329)
T ss_pred             EEEecCCCCCeEecceEEEEcCCCCEeeccHHHeEEcccccccccccCCCccceeEEECCeEccCcccceEEeecCCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999999654

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.71  E-value=1.1e-17  Score=148.33  Aligned_cols=136  Identities=15%  Similarity=0.116  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccC
Q psy504           66 LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGG  145 (358)
Q Consensus        66 m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~Gg  145 (358)
                      .+.+|.++++++++|+++++|||++     +|.|.|+...            ..+.+++..+..++||+||+++|.|.|+
T Consensus        23 ~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~------------~~~~~~i~~~~~~~kpVia~v~G~a~g~   85 (177)
T cd07014          23 SGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTAS------------EVIRAELAAARAAGKPVVASGGGNAASG   85 (177)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHH------------HHHHHHHHHHHhCCCCEEEEECCchhHH
Confidence            5789999999999999999999987     4888887642            2344567778889999999999999999


Q ss_pred             CceeeccccEEEEcCCeEEeecceecccccCccccc--------ccccccc--hhhHHhhhhhhcccccccccccccchh
Q psy504          146 GLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQ--------RLPRIVG--IPLAALYEDLLNNDCMSSLDTRYMWCT  215 (358)
Q Consensus       146 G~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~--------~L~r~iG--~~~A~~ll~~ltg~~i~a~~d~~mw~e  215 (358)
                      |+.|+++||+++++++++|+++.+..+..+......        .+++..|  ....++++  ..|..++|       ++
T Consensus        86 g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l--~~g~~~~a-------~~  156 (177)
T cd07014          86 GYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKI--AQGGVWTG-------QD  156 (177)
T ss_pred             HHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHh--cCcCeEeH-------HH
Confidence            999999999999999999999987766433222222        4444555  77788887  88999999       99


Q ss_pred             hHhcCCceEEEe
Q psy504          216 PYRRGLVVTLVI  227 (358)
Q Consensus       216 a~~~GLv~~vv~  227 (358)
                      |++.|||+++..
T Consensus       157 A~~~GLVD~v~~  168 (177)
T cd07014         157 AKANGLVDSLGS  168 (177)
T ss_pred             HHHcCCcccCCC
Confidence            999999999874

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.69  E-value=5.1e-17  Score=145.39  Aligned_cols=145  Identities=16%  Similarity=0.177  Sum_probs=115.0

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHH
Q psy504           49 VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE  128 (358)
Q Consensus        49 ~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~  128 (358)
                      ++|.++.     .++..+...+.++++.+++++ ++.|+|.=.     |-|+++..               ...++.++.
T Consensus         2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In-----SpGG~v~~---------------~~~i~~~l~   55 (187)
T cd07020           2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD-----TPGGLLDS---------------TREIVQAIL   55 (187)
T ss_pred             EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE-----CCCCCHHH---------------HHHHHHHHH
Confidence            4566653     356677889999999998665 788887633     33555532               224466777


Q ss_pred             cCCCcEEEeec---cccccCCceeeccccEEEEcCCeEEeecceecccccCc--------------ccccccccccch--
Q psy504          129 SIPVPVLAVLD---GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGA--------------GGTQRLPRIVGI--  189 (358)
Q Consensus       129 ~~~kPvIaavn---G~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~--------------g~s~~L~r~iG~--  189 (358)
                      .+|||+|++|+   |+|.|+|+.++++||+++++++++|+.++...+..+..              +....+++..|.  
T Consensus        56 ~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~  135 (187)
T cd07020          56 ASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNA  135 (187)
T ss_pred             hCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            89999999999   99999999999999999999999999999885543332              134478888998  


Q ss_pred             hhHHhhhhhhcccccccccccccchhhHhcCCceEEEec
Q psy504          190 PLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       190 ~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                      ..+++++  ++|+.+++       +||+++||+++++.+
T Consensus       136 ~~a~~~l--~~g~~~~a-------~eA~~~Glvd~v~~~  165 (187)
T cd07020         136 EWAEKAV--RESLSLTA-------EEALKLGVIDLIAAD  165 (187)
T ss_pred             HHHHHHH--HcCCeecH-------HHHHHcCCcccccCC
Confidence            6899998  99999999       999999999999865

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.57  E-value=6.1e-15  Score=134.40  Aligned_cols=120  Identities=18%  Similarity=0.202  Sum_probs=90.5

Q ss_pred             EEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRP--QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTC  125 (358)
Q Consensus        48 V~~Itlnrp--~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~  125 (358)
                      |++|.++.|  +..+.-+.-++.+|.++++.+..|+++++|||+     .||+|+|+....            .+.+.+.
T Consensus         2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~------------~~~~~l~   64 (211)
T cd07019           2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASE------------VIRAELA   64 (211)
T ss_pred             EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHH------------HHHHHHH
Confidence            455555432  112233344689999999999999999999997     589999997642            2344566


Q ss_pred             HHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccc----------cCcccccccccccc
Q psy504          126 QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAII----------PGAGGTQRLPRIVG  188 (358)
Q Consensus       126 ~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~----------p~~g~s~~L~r~iG  188 (358)
                      .+..++||+||+++|.|.|+|+.|+++||.+++++++.|+    .+|+.          +..|..+.+.+..|
T Consensus        65 ~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~g----siGv~~~~~~~~~~l~k~Gv~~~~~~~~g  133 (211)
T cd07019          65 AARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTG----SIGIFGVITTVENSLDSIGVHTDGVSTSP  133 (211)
T ss_pred             HHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEE----EeEEEEEcCCHHHHHHhcCCceEEEEecC
Confidence            7888999999999999999999999999999999999887    34444          55555555555434

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.37  E-value=1.5e-12  Score=135.00  Aligned_cols=155  Identities=20%  Similarity=0.229  Sum_probs=120.5

Q ss_pred             ecCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeec--CCCceecCCCchhccccCHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQA--RNALNATLVEEILTAVEAIRGDEEVRCVLLRSL--VKDVFCAGADLKHRLTLNEDQIRSFVST  119 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~--~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~--gg~~FsaG~Dl~~~~~~~~~~~~~~~~~  119 (358)
                      .++.|++|+++.+-.  .+..+....+.+.+.++.+..|++|++|||+-.  ||..|++                   +.
T Consensus       306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as-------------------e~  366 (584)
T TIGR00705       306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS-------------------EI  366 (584)
T ss_pred             CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH-------------------HH
Confidence            367899999987632  344444456788899999999999999999975  2333332                   22


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEE------eecc------eecccccCccccccccc--
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM------GLVE------TKLAIIPGAGGTQRLPR--  185 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f------~~pe------~~lGl~p~~g~s~~L~r--  185 (358)
                      +++.+..+...+||+|+.++|.|.+||+.++++||.++|++.+.+      +.+.      .++|+.++...+..+.+  
T Consensus       367 i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s  446 (584)
T TIGR00705       367 IRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVS  446 (584)
T ss_pred             HHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCC
Confidence            233455566788999999999999999999999999999999876      5553      58999998877776665  


Q ss_pred             --------------------------ccchhh-----HHhhhhhhcccccccccccccchhhHhcCCceEEE
Q psy504          186 --------------------------IVGIPL-----AALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLV  226 (358)
Q Consensus       186 --------------------------~iG~~~-----A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv  226 (358)
                                                .++..|     +.+.+  .+|+.+++       ++|++.|||+++-
T Consensus       447 ~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~i--a~Grv~tg-------~eA~~~GLVD~ig  509 (584)
T TIGR00705       447 LLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKV--AQGRVWTG-------EDAVSNGLVDALG  509 (584)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH--HhCCCcCH-------HHHHHcCCcccCC
Confidence                                      666666     66666  89999999       9999999999984

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.36  E-value=1.6e-12  Score=113.26  Aligned_cols=135  Identities=17%  Similarity=0.175  Sum_probs=101.0

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504           62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS  141 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~  141 (358)
                      ++..++.+|.+.++.++.|+.+++|+|...     |.|+|+..               ...+...+..++||+|+.++|.
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~-----s~Gg~~~~---------------~~~i~~~l~~~~kpvva~~~g~   67 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEVN-----TPGGRVDA---------------GMNIVDALQASRKPVIAYVGGQ   67 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEEE-----CCCcCHHH---------------HHHHHHHHHHhCCCEEEEECCh
Confidence            455789999999999999999999999874     66776643               2345567778889999999999


Q ss_pred             cccCCceeeccccEEEEcCCeEEeecceecccccCcccc-------------cccccc------cchhhHHhhhhhhccc
Q psy504          142 AYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGT-------------QRLPRI------VGIPLAALYEDLLNND  202 (358)
Q Consensus       142 a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s-------------~~L~r~------iG~~~A~~ll~~ltg~  202 (358)
                      |.++|+.|+++||.|++.+++.|++.....+.....+-.             ..+...      +......+++  ..+.
T Consensus        68 ~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~--~~~~  145 (161)
T cd00394          68 AASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDI--EKDL  145 (161)
T ss_pred             hHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHh--cCCc
Confidence            999999999999999999999999987765543211000             111111      2223345555  6677


Q ss_pred             ccccccccccchhhHhcCCceEE
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTL  225 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~v  225 (358)
                      .+++       ++|++.|||++|
T Consensus       146 ~~~a-------~eA~~~GLvD~i  161 (161)
T cd00394         146 VLTA-------QEALEYGLVDAL  161 (161)
T ss_pred             EEcH-------HHHHHcCCcCcC
Confidence            8888       999999999864

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.33  E-value=5.8e-12  Score=115.08  Aligned_cols=96  Identities=23%  Similarity=0.229  Sum_probs=74.7

Q ss_pred             cCCCCCCC-CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCC
Q psy504           54 NRPQARNA-LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPV  132 (358)
Q Consensus        54 nrp~~~Na-l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k  132 (358)
                      +++...|+ ++..++.+|.++++.+++|+++++|||+..     |.|+++...            ..+.+.+..+.. +|
T Consensus        13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~-----s~gg~~~~~------------~~l~~~l~~~~~-~K   74 (214)
T cd07022          13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDID-----SPGGEVAGV------------FELADAIRAARA-GK   74 (214)
T ss_pred             CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEe-----CCCCcHHHH------------HHHHHHHHHHhc-CC
Confidence            44554564 456899999999999999999999999764     556665331            223333344444 69


Q ss_pred             cEEEeeccccccCCceeeccccEEEEcCCeEEeec
Q psy504          133 PVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV  167 (358)
Q Consensus       133 PvIaavnG~a~GgG~~lal~cD~riase~a~f~~p  167 (358)
                      |+||+++|.|.|+|+.++++||.++|++++.|+..
T Consensus        75 pViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i  109 (214)
T cd07022          75 PIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI  109 (214)
T ss_pred             CEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence            99999999999999999999999999999988664

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.28  E-value=3.5e-12  Score=111.15  Aligned_cols=129  Identities=15%  Similarity=0.083  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecccccc
Q psy504           65 TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG  144 (358)
Q Consensus        65 ~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~G  144 (358)
                      .+..++.+.++.+..++.+ .+.|.+.||       ++.               ....+...+..++||+|+.++|.|.|
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG-------~~~---------------~~~~i~~~i~~~~~pvi~~v~g~a~s   71 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPGG-------DVF---------------AGLAIYNALKRHKGKVTVKIDGLAAS   71 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCCC-------CHH---------------HHHHHHHHHHhcCCCEEEEEcchHHh
Confidence            4677888889988877443 345555533       221               12346777888999999999999999


Q ss_pred             CCceeeccccEEEEcCCeEEeecceecccccCcc---------------cccccccccc--hhhHHhhhhhhcccccccc
Q psy504          145 GGLEMALACDIRVAASNVRMGLVETKLAIIPGAG---------------GTQRLPRIVG--IPLAALYEDLLNNDCMSSL  207 (358)
Q Consensus       145 gG~~lal~cD~riase~a~f~~pe~~lGl~p~~g---------------~s~~L~r~iG--~~~A~~ll~~ltg~~i~a~  207 (358)
                      +|+.++++||.|+++++++|++.+...|..+...               ....+.+..|  .....+++  ..+..+++ 
T Consensus        72 ~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~--~~~~~l~a-  148 (160)
T cd07016          72 AASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALM--DAETWLTA-  148 (160)
T ss_pred             HHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH--hCCeECcH-
Confidence            9999999999999999999999777655433221               1223677788  45666665  55667888 


Q ss_pred             cccccchhhHhcCCceEE
Q psy504          208 DTRYMWCTPYRRGLVVTL  225 (358)
Q Consensus       208 ~d~~mw~ea~~~GLv~~v  225 (358)
                            +||+++||+++|
T Consensus       149 ------~eA~~~GliD~v  160 (160)
T cd07016         149 ------QEAVELGFADEI  160 (160)
T ss_pred             ------HHHHHcCCCCcC
Confidence                  999999999874

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.18  E-value=5.7e-11  Score=108.00  Aligned_cols=101  Identities=21%  Similarity=0.284  Sum_probs=81.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |++|.++.+=...  ...++.+|.++++.++.|+++++|+|++.     |.|+|+...            ..+.+.+..+
T Consensus         2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~~-----s~Gg~~~~~------------~~i~~~i~~~   62 (208)
T cd07023           2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRIN-----SPGGSVVAS------------EEIYREIRRL   62 (208)
T ss_pred             EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEEE-----CCCCCHHHH------------HHHHHHHHHH
Confidence            5666665432101  36789999999999999999999999985     778888642            1234456778


Q ss_pred             HcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeec
Q psy504          128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV  167 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~p  167 (358)
                      ..++||+||+++|.|.|+|+.++++||.+++++.+.|+..
T Consensus        63 ~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~i  102 (208)
T cd07023          63 RKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSI  102 (208)
T ss_pred             HhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeC
Confidence            8889999999999999999999999999999999988765

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.15  E-value=8.1e-11  Score=106.99  Aligned_cols=94  Identities=26%  Similarity=0.351  Sum_probs=74.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |++|+++.+=.      ....+|.++++.+..|+++++|||++.     |.|+++..               ..++...+
T Consensus         2 v~vi~i~g~i~------~s~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~---------------~~~l~~~i   55 (207)
T TIGR00706         2 IAILPVSGAIA------VSPEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA---------------SEEIYEKL   55 (207)
T ss_pred             EEEEEEEEEEe------cCHHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH---------------HHHHHHHH
Confidence            56666654321      235789999999999999999999985     67777653               23345556


Q ss_pred             HcCC--CcEEEeeccccccCCceeeccccEEEEcCCeEEeec
Q psy504          128 ESIP--VPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV  167 (358)
Q Consensus       128 ~~~~--kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~p  167 (358)
                      ..++  ||+||.++|.|.|+|+.|+++||.+++++++.++.-
T Consensus        56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~i   97 (207)
T TIGR00706        56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSI   97 (207)
T ss_pred             HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEee
Confidence            6665  999999999999999999999999999999887663

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.02  E-value=8.7e-10  Score=97.84  Aligned_cols=95  Identities=18%  Similarity=0.250  Sum_probs=75.2

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHH
Q psy504           49 VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE  128 (358)
Q Consensus        49 ~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~  128 (358)
                      .+|.++.     .+++.+...+.++++.+++++ +..|++.=.     |.|+++.               ....+...+.
T Consensus         2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in-----spGG~v~---------------~~~~I~~~l~   55 (178)
T cd07021           2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID-----TPGGRVD---------------SALEIVDLIL   55 (178)
T ss_pred             EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE-----CcCCCHH---------------HHHHHHHHHH
Confidence            4555643     356678888999999998876 667766554     3355443               3445677888


Q ss_pred             cCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecce
Q psy504          129 SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVET  169 (358)
Q Consensus       129 ~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~  169 (358)
                      .+++|+|+.|+|.|.++|+.++++||++++++++.|+.++.
T Consensus        56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~   96 (178)
T cd07021          56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP   96 (178)
T ss_pred             hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee
Confidence            99999999999999999999999999999999999999844

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.98  E-value=1.5e-09  Score=99.77  Aligned_cols=87  Identities=21%  Similarity=0.178  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecccc
Q psy504           63 NATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA  142 (358)
Q Consensus        63 ~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a  142 (358)
                      +..++.+|.++++++..|++|++|||+.. +..| ++.++.++               .+.+..+...+||+||.++| |
T Consensus        27 ~~~~~~~l~~~l~~a~~d~~ik~vvL~~~-s~gg-~~~~~~el---------------~~~i~~~~~~~kpVia~~~~-~   88 (222)
T cd07018          27 SELSLRDLLEALEKAAEDDRIKGIVLDLD-GLSG-GLAKLEEL---------------RQALERFRASGKPVIAYADG-Y   88 (222)
T ss_pred             CCccHHHHHHHHHHHhcCCCeEEEEEECC-CCCC-CHHHHHHH---------------HHHHHHHHHhCCeEEEEeCC-C
Confidence            45678999999999999999999999998 4444 55555432               44455666789999999998 8


Q ss_pred             ccCCceeeccccEEEEcCCeEEeec
Q psy504          143 YGGGLEMALACDIRVAASNVRMGLV  167 (358)
Q Consensus       143 ~GgG~~lal~cD~riase~a~f~~p  167 (358)
                      .++|+.++++||.+++.+.+.|+..
T Consensus        89 ~sggy~lasaad~I~a~p~~~vg~i  113 (222)
T cd07018          89 SQGQYYLASAADEIYLNPSGSVELT  113 (222)
T ss_pred             CchhhhhhhhCCEEEECCCceEEee
Confidence            8999999999999999999988885

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.33  E-value=1.3e-06  Score=76.36  Aligned_cols=85  Identities=16%  Similarity=0.147  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504           62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS  141 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~  141 (358)
                      ++..+.+++.+.|..++.++..+.|+|.=.     |.|+++.               ....+...+...++|+++.+.|.
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v~---------------~~~~i~~~i~~~~~~v~~~~~g~   68 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDVF---------------AGMAIYDTIKFIKADVVTIIDGL   68 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcHH---------------HHHHHHHHHHhcCCCceEEEEee
Confidence            457889999999999998877777666554     3455442               23345667777899999999999


Q ss_pred             cccCCceeecccc--EEEEcCCeEEee
Q psy504          142 AYGGGLEMALACD--IRVAASNVRMGL  166 (358)
Q Consensus       142 a~GgG~~lal~cD--~riase~a~f~~  166 (358)
                      |.++|.-++++||  .|++.++++|.+
T Consensus        69 aaS~~~~i~~a~~~g~r~~~p~a~~~i   95 (162)
T cd07013          69 AASMGSVIAMAGAKGKRFILPNAMMMI   95 (162)
T ss_pred             hhhHHHHHHHcCCCCcEEEecCEEEEE
Confidence            9999999999999  577777776655

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.29  E-value=2.1e-06  Score=75.72  Aligned_cols=137  Identities=12%  Similarity=0.198  Sum_probs=93.2

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec-
Q psy504           61 ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD-  139 (358)
Q Consensus        61 al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn-  139 (358)
                      .++..+...|.+.++.++++ .++.|+|.=.     |-|+.+..               ...+...+...++|+++.|+ 
T Consensus         9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~~---------------~~~I~~~i~~~~~pvv~~v~p   67 (172)
T cd07015           9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADA---------------AGNIVQRIQQSKIPVIIYVYP   67 (172)
T ss_pred             EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHHH---------------HHHHHHHHHhcCcCEEEEEec
Confidence            36677888899999998865 5677777655     44555532               23446667778999999999 


Q ss_pred             --cccccCCceeeccccEEEEcCCeEEeecceecccccCcccc---------cc------cccccc--hhhHHhhhhhhc
Q psy504          140 --GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGT---------QR------LPRIVG--IPLAALYEDLLN  200 (358)
Q Consensus       140 --G~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s---------~~------L~r~iG--~~~A~~ll~~lt  200 (358)
                        |.|..+|.-++++||.+++.+++.++.-..-.|..+. +..         ..      +.+.-|  ...+.+++  -.
T Consensus        68 ~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~-~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v--~~  144 (172)
T cd07015          68 PGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQN-GSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFI--TK  144 (172)
T ss_pred             CCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCC-CccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHH--Hh
Confidence              9999999999999999999999999987764332110 000         00      111122  12223333  33


Q ss_pred             ccccccccccccchhhHhcCCceEEEec
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                      ...+++       +||++.|+++.+..+
T Consensus       145 ~~~lta-------~EA~~~G~iD~ia~~  165 (172)
T cd07015         145 DLSLTP-------EEALKYGVIEVVARD  165 (172)
T ss_pred             hcCcCH-------HHHHHcCCceeeeCC
Confidence            344555       999999999998865

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.25  E-value=4.4e-06  Score=75.57  Aligned_cols=136  Identities=16%  Similarity=0.148  Sum_probs=81.3

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecc
Q psy504           61 ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDG  140 (358)
Q Consensus        61 al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG  140 (358)
                      .++.++.+.+...+..++.++..+-|.+.=.     |.|+++.               ....++..+...+.|+++.+.|
T Consensus        39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In-----SpGG~v~---------------~g~~I~d~i~~~~~~v~t~~~G   98 (200)
T PRK00277         39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYIN-----SPGGSVT---------------AGLAIYDTMQFIKPDVSTICIG   98 (200)
T ss_pred             EECHHHHHHHHHHHHHhhccCCCCCEEEEEE-----CCCCcHH---------------HHHHHHHHHHhcCCCEEEEEEe
Confidence            3678899999999998886544333333322     2244432               2334456677788899999999


Q ss_pred             ccccCCceeeccccEEEEcCCeEEeecceecccccCcccc----------------------cccccccch--hhHHhhh
Q psy504          141 SAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGT----------------------QRLPRIVGI--PLAALYE  196 (358)
Q Consensus       141 ~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s----------------------~~L~r~iG~--~~A~~ll  196 (358)
                      .|.++|..+++++     +++.++.+|++.+++.+..+++                      ..+....|.  ....+++
T Consensus        99 ~aaS~a~~I~~ag-----~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~  173 (200)
T PRK00277         99 QAASMGAFLLAAG-----AKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDT  173 (200)
T ss_pred             EeccHHHHHHhcC-----CCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            9999999888874     2334444455555554332221                      111222222  1222222


Q ss_pred             hhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                        -.+..++|       +||++.|++++|+.+.+
T Consensus       174 --~~~~~lsa-------~EA~e~GliD~Ii~~~~  198 (200)
T PRK00277        174 --DRDNFMSA-------EEAKEYGLIDEVLTKRK  198 (200)
T ss_pred             --hCCccccH-------HHHHHcCCccEEeecCC
Confidence              22344555       89999999999997644

>KOG1683|consensus

Probab=98.22  E-value=3e-07  Score=88.51  Aligned_cols=167  Identities=17%  Similarity=0.095  Sum_probs=131.0

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHH
Q psy504           47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ  126 (358)
Q Consensus        47 ~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~  126 (358)
                      +++.+.++ |+ .|..|.++..+|..-++++..+..+++..+|+..-+.|++|.|..+.......-....+-++++++..
T Consensus        66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~  143 (380)
T KOG1683|consen   66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILA  143 (380)
T ss_pred             ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHh
Confidence            68888888 66 59999999999999999999999999999999877899999999988766555555677788999999


Q ss_pred             HHcCCCcEEEeeccccccCC--ceeeccccEEEEc--CCeEEeecceecccc-cCcc---cccccccccchhhHHhhhhh
Q psy504          127 LESIPVPVLAVLDGSAYGGG--LEMALACDIRVAA--SNVRMGLVETKLAII-PGAG---GTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       127 i~~~~kPvIaavnG~a~GgG--~~lal~cD~rias--e~a~f~~pe~~lGl~-p~~g---~s~~L~r~iG~~~A~~ll~~  198 (358)
                      ..+++.|+.+|+||.+-.++  +-++.+|+|++..  ..-..+..+...++. |.+-   -...++..+|+..-..+.  
T Consensus       144 ~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~--  221 (380)
T KOG1683|consen  144 LYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGV--  221 (380)
T ss_pred             cCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhcc--
Confidence            99999999999999999998  8999999999998  444557788887743 3221   122344445544333332  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEec
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                          -++-       .++++.|+++.+.+.
T Consensus       222 ----gfdv-------~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  222 ----GFDV-------AEALAVGLGDEIGPR  240 (380)
T ss_pred             ----CccH-------HHHHhhccchhccch
Confidence                3444       789999999887764

>PRK10949 protease 4; Provisional

Probab=98.21  E-value=1.2e-05  Score=84.15  Aligned_cols=101  Identities=18%  Similarity=0.276  Sum_probs=72.8

Q ss_pred             cCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHH
Q psy504           45 RPGIVELCMNRP-----QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVST  119 (358)
Q Consensus        45 ~~~V~~Itlnrp-----~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~  119 (358)
                      ++.|++|.++..     .....++.   +.+.+.++++..|++|++|||+-.     |.|+...            ..+.
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn-----SpGGs~~------------ase~  384 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN-----SPGGSVT------------ASEV  384 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec-----CCCCcHH------------HHHH
Confidence            456777777632     12233443   567888999999999999999987     3343321            1233


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEe
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG  165 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~  165 (358)
                      +++.+.++....||+|+.+.|.|..||.-++++||.++|.+.+..|
T Consensus       385 i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tG  430 (618)
T PRK10949        385 IRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTG  430 (618)
T ss_pred             HHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCcee
Confidence            4444555667789999999999999999999999999999875433

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.93  E-value=0.00026  Score=68.02  Aligned_cols=140  Identities=11%  Similarity=-0.029  Sum_probs=94.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        59 ~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      .-+++++-++...+.++.+++..- =+|-|.-+ +++++ |.+-         +.....+.+.+.+..+....+|+|++|
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~f~l-PIItlvDT-pGA~~-G~~A---------E~~G~~~aiar~l~~~a~~~VP~IsVV  199 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANKFGL-PILTFIDT-PGAWA-GVKA---------EKLGQGEAIAVNLREMFSFEVPIICTI  199 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCC-CEEEEEeC-CCcCc-CHHH---------HHHhHHHHHHHHHHHHHcCCCCEEEEE
Confidence            456889999999999999886543 34444333 23333 3221         112234556666777889999999999


Q ss_pred             ccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHh
Q psy504          139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR  218 (358)
Q Consensus       139 nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~  218 (358)
                      -|.|.|||.-....||++++.+++.++.-      .|.++++..+...--...|.+.+      +++|       .+.++
T Consensus       200 iGeggsGGAlal~~aD~V~m~e~a~~sVi------sPEg~a~Il~~d~~~a~~aA~~~------~ita-------~dL~~  260 (322)
T CHL00198        200 IGEGGSGGALGIGIGDSIMMLEYAVYTVA------TPEACAAILWKDSKKSLDAAEAL------KITS-------EDLKV  260 (322)
T ss_pred             eCcccHHHHHhhhcCCeEEEeCCeEEEec------CHHHHHHHHhcchhhHHHHHHHc------CCCH-------HHHHh
Confidence            99998887655556999999999988762      45555555544322222333333      6788       89999


Q ss_pred             cCCceEEEecC
Q psy504          219 RGLVVTLVIKF  229 (358)
Q Consensus       219 ~GLv~~vv~~~  229 (358)
                      .|+|+.|++..
T Consensus       261 ~giiD~ii~Ep  271 (322)
T CHL00198        261 LGIIDEIIPEP  271 (322)
T ss_pred             CCCCeEeccCC
Confidence            99999999753

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=97.86  E-value=0.00036  Score=65.35  Aligned_cols=140  Identities=11%  Similarity=0.065  Sum_probs=94.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        59 ~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      .-+++++-++...+.++.+++..- =+|-|.=+ ++++. |.+..         .....+.+.+++..+...++|+|+.|
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~~l-PvV~lvDt-pGa~~-g~~aE---------~~G~~~~ia~~~~~~s~~~VP~IsVI  143 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKFGR-PVVTFINT-AGAYP-GVGAE---------ERGQGEAIARNLMEMSDLKVPIIAII  143 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCC-CEEEEEEC-CCcCC-CHhHH---------hccHHHHHHHHHHHHhCCCCCEEEEE
Confidence            456889999999999998876543 34444333 22332 32211         12234566677788889999999999


Q ss_pred             ccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHh
Q psy504          139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR  218 (358)
Q Consensus       139 nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~  218 (358)
                      -|.|.|||......||++++.+++.++.-      .|+++++..+..   ..+|.+..   .-..+++       .++.+
T Consensus       144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v~------~pe~~a~il~~~---~~~a~~aa---~~~~~~a-------~~l~~  204 (256)
T PRK12319        144 IGEGGSGGALALAVADQVWMLENTMYAVL------SPEGFASILWKD---GSRATEAA---ELMKITA-------GELLE  204 (256)
T ss_pred             eCCcCcHHHHHhhcCCEEEEecCceEEEc------CHHHHHHHHhcC---cccHHHHH---HHcCCCH-------HHHHH
Confidence            99998888877779999999999987762      233333333322   13433332   1125677       89999


Q ss_pred             cCCceEEEecC
Q psy504          219 RGLVVTLVIKF  229 (358)
Q Consensus       219 ~GLv~~vv~~~  229 (358)
                      .|+|+.|++..
T Consensus       205 ~g~iD~ii~e~  215 (256)
T PRK12319        205 MGVVDKVIPEH  215 (256)
T ss_pred             CCCCcEecCCC
Confidence            99999999764

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.85  E-value=4.8e-05  Score=69.18  Aligned_cols=139  Identities=15%  Similarity=0.144  Sum_probs=91.8

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecc
Q psy504           61 ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDG  140 (358)
Q Consensus        61 al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG  140 (358)
                      .++.++..++.+.|..++..+..+.|.|.=.     |.|+++.               ....++..+..++.|+++.+.|
T Consensus        43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~---------------~g~~I~d~i~~~~~~v~t~~~G  102 (207)
T PRK12553         43 QVDDASANDVMAQLLVLESIDPDRDITLYIN-----SPGGSVT---------------AGDAIYDTIQFIRPDVQTVCTG  102 (207)
T ss_pred             eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe-----CCCCcHH---------------HHHHHHHHHHhcCCCcEEEEEe
Confidence            3678999999999999987553444444332     3344442               2334567777888899999999


Q ss_pred             ccccCCceeecccc--EEEEcCCeEEeecceecccccCcccc------------------cccccccch--hhHHhhhhh
Q psy504          141 SAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGT------------------QRLPRIVGI--PLAALYEDL  198 (358)
Q Consensus       141 ~a~GgG~~lal~cD--~riase~a~f~~pe~~lGl~p~~g~s------------------~~L~r~iG~--~~A~~ll~~  198 (358)
                      .|.++|.-++++||  .|++.+++.|.+-....+ .+..|..                  ..+.+..|.  ....+++  
T Consensus       103 ~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~-~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~--  179 (207)
T PRK12553        103 QAASAGAVLLAAGTPGKRFALPNARILIHQPSLG-GGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDT--  179 (207)
T ss_pred             ehhhHHHHHHHcCCcCcEEECCCchhhhcCcccc-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH--
Confidence            99999999999999  589999998888654321 0111211                  112222332  2223333  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecC
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKF  229 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~  229 (358)
                      -.+..++|       +||++.|+|++|+...
T Consensus       180 ~~~~~lta-------~EA~e~GliD~I~~~~  203 (207)
T PRK12553        180 DRDKWLTA-------EEAKDYGLVDQIITSY  203 (207)
T ss_pred             hcCccccH-------HHHHHcCCccEEcCch
Confidence            34555666       9999999999998653

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=97.85  E-value=1.9e-05  Score=69.59  Aligned_cols=91  Identities=15%  Similarity=0.133  Sum_probs=68.8

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504           62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS  141 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~  141 (358)
                      ++.+...++...+..+..++..+.|+|.=.     |.|+|+..               ...+...+...+.|+++.+.|.
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v~~---------------~~~i~~~l~~~~~~v~t~~~g~   77 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSVTA---------------GLAIYDTMQYIKPPVSTICLGL   77 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEE-----CCCCCHHH---------------HHHHHHHHHhcCCCEEEEEEeE
Confidence            567888999999999998766555555443     33444422               2344556667799999999999


Q ss_pred             cccCCceeecccc--EEEEcCCeEEeecceecc
Q psy504          142 AYGGGLEMALACD--IRVAASNVRMGLVETKLA  172 (358)
Q Consensus       142 a~GgG~~lal~cD--~riase~a~f~~pe~~lG  172 (358)
                      |.++|.-+++++|  .|++.+++.|.+-+...+
T Consensus        78 aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~  110 (171)
T cd07017          78 AASMGALLLAAGTKGKRYALPNSRIMIHQPLGG  110 (171)
T ss_pred             ehhHHHHHHHcCCCCCEEEccchHHHHcCCCcc
Confidence            9999999999999  799999999888765443

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.84  E-value=6.9e-05  Score=69.95  Aligned_cols=152  Identities=18%  Similarity=0.208  Sum_probs=108.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504           60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD  139 (358)
Q Consensus        60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn  139 (358)
                      .-++.+..+++.++++....+..+ .++|...       |+++.               ...++...+..++.++++.|+
T Consensus        70 ~~I~i~dse~v~raI~~~~~~~~I-dLii~Tp-------GG~v~---------------AA~~I~~~l~~~~~~v~v~VP  126 (285)
T PF01972_consen   70 RYIDIDDSEFVLRAIREAPKDKPI-DLIIHTP-------GGLVD---------------AAEQIARALREHPAKVTVIVP  126 (285)
T ss_pred             eeEcHhhHHHHHHHHHhcCCCCce-EEEEECC-------CCcHH---------------HHHHHHHHHHhCCCCEEEEEC
Confidence            568889999999999998777665 3444443       33332               234556778889999999999


Q ss_pred             cccccCCceeeccccEEEEcCCeEEeecceecccccCcccccc----------------------------------ccc
Q psy504          140 GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQR----------------------------------LPR  185 (358)
Q Consensus       140 G~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~----------------------------------L~r  185 (358)
                      ..|+.+|.-+|++||-+++++.+.+|--+.++|-.|..+-.-.                                  |..
T Consensus       127 ~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~  206 (285)
T PF01972_consen  127 HYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKD  206 (285)
T ss_pred             cccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999988886422111                                  222


Q ss_pred             ccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504          186 IVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI  239 (358)
Q Consensus       186 ~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~  239 (358)
                      .++..+|.++.+.|+...++- |.....++|.+.||-..    .+.+.++-.+.
T Consensus       207 ~~~~eka~~ia~~L~~g~~tH-dypi~~eea~~lGL~V~----t~~p~ei~~lm  255 (285)
T PF01972_consen  207 KMDEEKAEEIAEKLSSGKWTH-DYPITVEEAKELGLPVS----TDMPEEIYELM  255 (285)
T ss_pred             CCCHHHHHHHHHHhcCCCCCC-CCCCCHHHHHHcCCCcC----CCCcHHHHHHH
Confidence            456666766665566655553 44455688888888532    24556666665

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=97.79  E-value=0.00058  Score=67.44  Aligned_cols=139  Identities=13%  Similarity=0.063  Sum_probs=93.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504           60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD  139 (358)
Q Consensus        60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn  139 (358)
                      .+++++.++...+.++.+++..- =+|-|.=+ ++++ .|.+..         .....+.+.+.+..+....+|+|+.|-
T Consensus       200 G~~~peGyRKAlR~mklAekf~l-PIVtLVDT-pGA~-pG~~AE---------e~Gqa~aIAr~l~ams~l~VPiISVVi  267 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKFGF-PILTFVDT-PGAY-AGIKAE---------ELGQGEAIAFNLREMFGLRVPIIATVI  267 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCC-CEEEEEeC-CCcC-CCHHHH---------HHhHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            46889999999999999876543 34444433 2233 232221         123345566777888999999999999


Q ss_pred             cccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHhc
Q psy504          140 GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRR  219 (358)
Q Consensus       140 G~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~  219 (358)
                      |.+.+||.....+||++++.+++.++.-      .|.++++..+....-...|.+.+      .+++       .++++.
T Consensus       268 GeGgSGGAlalg~aD~VlMle~A~ysVi------sPEgaAsILwkd~~~A~eAAeal------kitA-------~dL~~~  328 (431)
T PLN03230        268 GEGGSGGALAIGCGNRMLMMENAVYYVA------SPEACAAILWKSAAAAPKAAEAL------RITA-------AELVKL  328 (431)
T ss_pred             CCCCcHHHHHhhcCCEEEEecCCEEEec------CHHHHHHHHhccccchHHHHHHc------CCCH-------HHHHhC
Confidence            9996666544456899999999876652      35555555544332222333332      6777       899999


Q ss_pred             CCceEEEecC
Q psy504          220 GLVVTLVIKF  229 (358)
Q Consensus       220 GLv~~vv~~~  229 (358)
                      |+|+.|++..
T Consensus       329 GiID~II~Ep  338 (431)
T PLN03230        329 GVVDEIVPEP  338 (431)
T ss_pred             CCCeEeccCC
Confidence            9999999753

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.79  E-value=0.00035  Score=73.06  Aligned_cols=140  Identities=10%  Similarity=-0.002  Sum_probs=95.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        59 ~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      .-+++++.++...+.++.+++..-. +|-|.=+ +++++ |.+..+         ......+.+.+..+....+|+|++|
T Consensus       220 fG~~~peGyRKAlRlmkLAekfgLP-IVtLVDT-pGA~p-G~~AEe---------~Gq~~aIArnl~amasl~VP~ISVV  287 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHHGFP-IVTFIDT-PGAYA-DLKSEE---------LGQGEAIAHNLRTMFGLKVPIVSIV  287 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCC-EEEEEEC-CCcCC-CchhHH---------HhHHHHHHHHHHHHhCCCCCEEEEE
Confidence            4568888899999999988765433 3433333 22333 322221         2334566677888889999999999


Q ss_pred             ccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHh
Q psy504          139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR  218 (358)
Q Consensus       139 nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~  218 (358)
                      -|.|.|||+.....||++++.+++.++.      +.|.++++..+...--...|.+.+      .++|       .+.++
T Consensus       288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~~~A~eAAe~l------kiTa-------~dL~~  348 (762)
T PLN03229        288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKAAPKAAEKL------RITA-------QELCR  348 (762)
T ss_pred             eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCcccHHHHHHHc------CCCH-------HHHHh
Confidence            9999888877777799999999987655      245555555444432223344443      6778       89999


Q ss_pred             cCCceEEEecC
Q psy504          219 RGLVVTLVIKF  229 (358)
Q Consensus       219 ~GLv~~vv~~~  229 (358)
                      .|+|+.|++..
T Consensus       349 lGiiD~IIpEp  359 (762)
T PLN03229        349 LQIADGIIPEP  359 (762)
T ss_pred             CCCCeeeccCC
Confidence            99999999753

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=97.74  E-value=0.00088  Score=64.42  Aligned_cols=140  Identities=12%  Similarity=0.057  Sum_probs=91.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        59 ~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      .-+++++-++...+.++.+++-. +=+|-|.=+ +++++ |.+.         +.....+.+.+++..+....+|+|++|
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f~-iPvVtlvDT-pGa~~-g~~a---------E~~G~~~aia~~l~a~s~~~VP~IsVV  196 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERFK-MPIITFIDT-PGAYP-GIGA---------EERGQSEAIARNLREMARLGVPVICTV  196 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEEC-CCCCC-CHHH---------HHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            35688999999999999887654 344444443 33333 3221         112334556677778889999999999


Q ss_pred             ccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHh
Q psy504          139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR  218 (358)
Q Consensus       139 nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~  218 (358)
                      -|.|.|||......||++++.+++.++.      +.|.++++..+...--...|.+.+      .+++       .++.+
T Consensus       197 iGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~~~a~~aae~~------~~ta-------~~l~~  257 (316)
T TIGR00513       197 IGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDASKAPKAAEAM------KITA-------PDLKE  257 (316)
T ss_pred             ecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccchhhHHHHHHHc------cCCH-------HHHHH
Confidence            9999777765445699999999998775      234444443333211112222222      4567       89999


Q ss_pred             cCCceEEEecC
Q psy504          219 RGLVVTLVIKF  229 (358)
Q Consensus       219 ~GLv~~vv~~~  229 (358)
                      .|+|+.|++..
T Consensus       258 ~G~iD~II~ep  268 (316)
T TIGR00513       258 LGLIDSIIPEP  268 (316)
T ss_pred             CCCCeEeccCC
Confidence            99999999753

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.67  E-value=0.00018  Score=64.99  Aligned_cols=87  Identities=15%  Similarity=0.124  Sum_probs=62.7

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504           62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS  141 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~  141 (358)
                      ++.++...+.+.|..++..+..+.|.|.=.     |.|+++.               ....+...+..++.||++.+.|.
T Consensus        32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~---------------ag~aI~d~i~~~~~~V~t~v~G~   91 (197)
T PRK14512         32 INKDLSELFQEKILLLEALDSKKPIFVYID-----SEGGDID---------------AGFAIFNMIRFVKPKVFTIGVGL   91 (197)
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCHH---------------HHHHHHHHHHhCCCCEEEEEEee
Confidence            567888899999988876333344444332     2344432               22345677778999999999999


Q ss_pred             cccCCceeeccccE--EEEcCCeEEeecc
Q psy504          142 AYGGGLEMALACDI--RVAASNVRMGLVE  168 (358)
Q Consensus       142 a~GgG~~lal~cD~--riase~a~f~~pe  168 (358)
                      |.+.|.-++++||-  |++.+++.|.+-.
T Consensus        92 AaSaaslIl~ag~~~~R~~~p~s~imiHq  120 (197)
T PRK14512         92 VASAAALIFLAAKKESRFSLPNARYLLHQ  120 (197)
T ss_pred             eHhHHHHHHhcCCcCceeECCCCcEEEEc
Confidence            99999999999985  8888888876544

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.62  E-value=9.5e-05  Score=65.65  Aligned_cols=97  Identities=19%  Similarity=0.261  Sum_probs=69.1

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCce--EEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           50 ELCMNRPQARNALNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        50 ~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr--vVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      +|.|+.|     ++.++...+.+.|..++..+..+  .+.|.+.       |+|+.               ....+...+
T Consensus        18 ~i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp-------GG~v~---------------~g~~i~~~i   70 (182)
T PF00574_consen   18 IIFLNGP-----IDEESANRLISQLLYLENEDKNKPINIYINSP-------GGDVD---------------AGLAIYDAI   70 (182)
T ss_dssp             EEEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC-------EBCHH---------------HHHHHHHHH
T ss_pred             EEEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC-------CCccH---------------HHHHHHHHH
Confidence            4555544     68899999999888774332222  2334443       44442               234567788


Q ss_pred             HcCCCcEEEeeccccccCCceeeccccE--EEEcCCeEEeecceeccc
Q psy504          128 ESIPVPVLAVLDGSAYGGGLEMALACDI--RVAASNVRMGLVETKLAI  173 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~~lal~cD~--riase~a~f~~pe~~lGl  173 (358)
                      ..++.|+++.+.|.|.++|.-++++||.  |++.+++.|.+-+...+.
T Consensus        71 ~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~  118 (182)
T PF00574_consen   71 RSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGS  118 (182)
T ss_dssp             HHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEE
T ss_pred             HhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeec
Confidence            8899999999999999999999999999  899999999987776554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.58  E-value=0.0013  Score=63.40  Aligned_cols=140  Identities=9%  Similarity=0.044  Sum_probs=93.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        59 ~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      .-+++++.++...+.++.+++-. +=+|-|.=+ +++++ |.+-.         .....+.+.+++..+....+|+|++|
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f~-lPIVtlvDT-pGa~~-G~~aE---------~~G~~~aia~~l~~~a~~~VP~IsVI  196 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKFG-LPIITFIDT-PGAYP-GIGAE---------ERGQSEAIARNLREMARLKVPIICTV  196 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCCCC-CHHHH---------hccHHHHHHHHHHHHhCCCCCEEEEE
Confidence            45688999999999998887653 445555444 33333 33222         12234566777888899999999999


Q ss_pred             ccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHh
Q psy504          139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR  218 (358)
Q Consensus       139 nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~  218 (358)
                      -|.|.|||......||++++.+++.++.      +.|.++++..+..   ..+|.+..   ....+++       .++.+
T Consensus       197 iGeg~sGGAla~~~aD~v~m~~~A~~sv------isPEg~a~Il~~~---~~~a~~aa---e~~~ita-------~~l~~  257 (319)
T PRK05724        197 IGEGGSGGALAIGVGDRVLMLEYSTYSV------ISPEGCASILWKD---ASKAPEAA---EAMKITA-------QDLKE  257 (319)
T ss_pred             eCCccHHHHHHHhccCeeeeecCceEee------cCHHHHHHHHhcC---chhHHHHH---HHcCCCH-------HHHHH
Confidence            9999777765445699999999988765      2344444433332   12333332   1225677       89999


Q ss_pred             cCCceEEEecC
Q psy504          219 RGLVVTLVIKF  229 (358)
Q Consensus       219 ~GLv~~vv~~~  229 (358)
                      .|+|+.|++..
T Consensus       258 ~g~iD~II~Ep  268 (319)
T PRK05724        258 LGIIDEIIPEP  268 (319)
T ss_pred             CCCceEeccCC
Confidence            99999999753

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=97.45  E-value=0.00069  Score=60.84  Aligned_cols=134  Identities=15%  Similarity=0.115  Sum_probs=84.3

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504           62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS  141 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~  141 (358)
                      ++.++..++...|..++.++..+-|.+.=.     |.|+|+.               ....++..+..++.|+...+.|.
T Consensus        35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In-----SpGG~v~---------------~g~~I~d~l~~~~~~v~t~~~G~   94 (191)
T TIGR00493        35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN-----SPGGSIT---------------AGLAIYDTMQFIKPDVSTICIGQ   94 (191)
T ss_pred             EChHHHHHHHHHHHHhhccCCCCCEEEEEE-----CCCCCHH---------------HHHHHHHHHHhcCCCEEEEEEEe
Confidence            567788888888888886654444444333     2344442               22344556677777888888899


Q ss_pred             cccCCceeecccc--EEEEcCCeEEeecceecccccCcccccc------------------cccccch--hhHHhhhhhh
Q psy504          142 AYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGTQR------------------LPRIVGI--PLAALYEDLL  199 (358)
Q Consensus       142 a~GgG~~lal~cD--~riase~a~f~~pe~~lGl~p~~g~s~~------------------L~r~iG~--~~A~~ll~~l  199 (358)
                      |.+.|.-+++++|  .|++.+++.|.+-+..-|.   .|-+.-                  +.+..|.  ....+++  -
T Consensus        95 AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~---~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~--~  169 (191)
T TIGR00493        95 AASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDT--E  169 (191)
T ss_pred             eccHHHHHHhcCCCCcEEecCCceEEEecCcccc---cCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh--h
Confidence            9999988888765  6999999998886554332   111111                  2222232  2222332  3


Q ss_pred             cccccccccccccchhhHhcCCceEEEe
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVI  227 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~  227 (358)
                      .+..++|       +||+++|++++|+.
T Consensus       170 ~~~~lta-------~EA~~~GliD~ii~  190 (191)
T TIGR00493       170 RDFFMSA-------EEAKEYGLIDSVLT  190 (191)
T ss_pred             CCccCcH-------HHHHHcCCccEEec
Confidence            3445555       89999999999863

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=97.40  E-value=0.00071  Score=61.19  Aligned_cols=91  Identities=9%  Similarity=0.076  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504           62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS  141 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~  141 (358)
                      ++.++.+++...+-.++.++..+-+.+.=.     |.|+++.               ....++..+...+.|+...+.|.
T Consensus        39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN-----SpGG~v~---------------~g~aIyd~m~~~~~~V~Tv~~G~   98 (200)
T CHL00028         39 VDDEIANQLIGLMVYLSIEDDTKDLYLFIN-----SPGGSVI---------------SGLAIYDTMQFVKPDVHTICLGL   98 (200)
T ss_pred             ecHHHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCcchh---------------hHHHHHHHHHhcCCCEEEEEEEe
Confidence            788999999999999875543344433322     2244432               12345677888999999999999


Q ss_pred             cccCCceeecccc--EEEEcCCeEEeecceecc
Q psy504          142 AYGGGLEMALACD--IRVAASNVRMGLVETKLA  172 (358)
Q Consensus       142 a~GgG~~lal~cD--~riase~a~f~~pe~~lG  172 (358)
                      |.+.|.-|++++|  -|++.++++|.+-....|
T Consensus        99 AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~  131 (200)
T CHL00028         99 AASMASFILAGGEITKRLAFPHARVMIHQPASS  131 (200)
T ss_pred             hHHHHHHHHhCCCCCCEEecCCCeEEEecCccC
Confidence            9999999999998  689999888887665444

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.37  E-value=0.0028  Score=59.91  Aligned_cols=107  Identities=20%  Similarity=0.269  Sum_probs=68.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC----CceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDE----EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~----~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      |+++-.+.--..-++....-..+.++++.+.+|.    .+-+|.|.-+      .|..+.+-.    ...... ......
T Consensus        61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS------gGaRlqEg~----~~L~~~-a~i~~~  129 (274)
T TIGR03133        61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDT------GGVRLQEAN----AGLIAI-AEIMRA  129 (274)
T ss_pred             EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcC------CCcChhhhH----HHHHHH-HHHHHH
Confidence            5666666555566888888899999999987621    1234555443      244443210    011111 111222


Q ss_pred             HHHHHcCCCcEEEeeccc--cccCCceeeccccEEEEcCCeEEee
Q psy504          124 TCQLESIPVPVLAVLDGS--AYGGGLEMALACDIRVAASNVRMGL  166 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~--a~GgG~~lal~cD~riase~a~f~~  166 (358)
                      ...+... .|+|+.+-|+  |.||+..++.+||++|+++++++++
T Consensus       130 ~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~  173 (274)
T TIGR03133       130 ILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGL  173 (274)
T ss_pred             HHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEec
Confidence            2333444 9999999999  8999999999999999999887777

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.23  E-value=0.0012  Score=63.86  Aligned_cols=89  Identities=26%  Similarity=0.300  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccC
Q psy504           66 LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGG  145 (358)
Q Consensus        66 m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~Gg  145 (358)
                      ..+.+.+.++.+..|+.+++|+|.=.     |.|+....            ...+.+.++++..-. |+++.|++.|..|
T Consensus        81 ~~~~~~~~l~~~~~~~~vk~vvL~in-----SPGG~v~a------------s~~i~~~l~~l~~~~-PV~v~v~~~AASG  142 (317)
T COG0616          81 GGDDIEEILRAARADPSVKAVVLRIN-----SPGGSVVA------------SELIARALKRLRAKK-PVVVSVGGYAASG  142 (317)
T ss_pred             cHHHHHHHHHHHhcCCCCceEEEEEE-----CcCCchhH------------HHHHHHHHHHHhhcC-CEEEEECCeecch
Confidence            35667778888889999999998765     33444321            123344455555555 9999999999999


Q ss_pred             CceeeccccEEEEcCCeEEeecceecc
Q psy504          146 GLEMALACDIRVAASNVRMGLVETKLA  172 (358)
Q Consensus       146 G~~lal~cD~riase~a~f~~pe~~lG  172 (358)
                      |.-+|++||.+||++.+..|---+..+
T Consensus       143 GY~IA~aAd~I~a~p~si~GSIGVi~~  169 (317)
T COG0616         143 GYYIALAADKIVADPSSITGSIGVISG  169 (317)
T ss_pred             hhhhhccCCEEEecCCceeeeceeEEe
Confidence            999999999999999988775544443

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.21  E-value=0.0026  Score=60.85  Aligned_cols=108  Identities=19%  Similarity=0.277  Sum_probs=72.1

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC----CceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDE----EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        47 ~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~----~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      .|+.+-.+..-..-++.......+.++++.+.++.    -+-+|.|.-+|      |..+.+-.    ...... .....
T Consensus        69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG------GaRlqEg~----~~L~~~-a~i~~  137 (301)
T PRK07189         69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG------GVRLQEAN----AGLAAI-AEIMR  137 (301)
T ss_pred             EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC------CcCccchH----HHHHHH-HHHHH
Confidence            36666666555667899999999999999998765    13455554432      44443210    011111 11122


Q ss_pred             HHHHHHcCCCcEEEeeccc--cccCCceeeccccEEEEcCCeEEee
Q psy504          123 MTCQLESIPVPVLAVLDGS--AYGGGLEMALACDIRVAASNVRMGL  166 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~--a~GgG~~lal~cD~riase~a~f~~  166 (358)
                      .+..+... +|+|+++-|+  |+||+...+.+||++|+++++.+++
T Consensus       138 ~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl  182 (301)
T PRK07189        138 AIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL  182 (301)
T ss_pred             HHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence            22233444 9999999999  9999999999999999999888777

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.09  E-value=0.015  Score=55.43  Aligned_cols=155  Identities=13%  Similarity=0.125  Sum_probs=92.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |++...+..=..-++....-+.+.++++.+.+.. +=+|++...|      |+.+.+-..    ......+....+....
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SG------GARmQEg~~----sL~qmak~saa~~~~~  203 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASG------GARMQEGSL----SLMQMAKISSALYDYQ  203 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCC------Cccccccch----hhhhhHHHHHHHHHHH
Confidence            6666666555667899999999999999997765 4455555542      444432110    0001111111112112


Q ss_pred             HcCCCcEEEeeccccccCCcee-eccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccccc
Q psy504          128 ESIPVPVLAVLDGSAYGGGLEM-ALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSS  206 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~~l-al~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a  206 (358)
                      ..-..|.|+++.|+|.||+... ++.||++|+.+++.+++.-.               |.+      +.   .+|+.++.
T Consensus       204 ~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP---------------rVI------e~---t~ge~lpe  259 (296)
T CHL00174        204 SNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK---------------RVI------EQ---TLNKTVPE  259 (296)
T ss_pred             HcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH---------------HHH------HH---hcCCcCCc
Confidence            3567999999999999998765 66799999988887666421               111      00   12333221


Q ss_pred             ccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504          207 LDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI  239 (358)
Q Consensus       207 ~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~  239 (358)
                        +.-.++-.++.|+|+.+|+..+....+..+.
T Consensus       260 --~fq~ae~l~~~G~vD~iV~r~~lr~~l~~ll  290 (296)
T CHL00174        260 --GSQAAEYLFDKGLFDLIVPRNLLKGVLSELF  290 (296)
T ss_pred             --ccccHHHHHhCcCceEEEcHHHHHHHHHHHH
Confidence              1112366778999999998665555555544

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.02  E-value=0.0033  Score=57.61  Aligned_cols=88  Identities=13%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceE--EEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           61 ALNATLVEEILTAVEAIRGDEEVRC--VLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        61 al~~~m~~eL~~~l~~~~~d~~vrv--VVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      .++..+.+++...|..++..+.-+-  +.|-+.       |+++.               ....++..+...+.||.+.+
T Consensus        62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSp-------GGsv~---------------aGlaIyd~m~~~~~~V~tv~  119 (221)
T PRK14514         62 QIDDYTANTIQAQLLYLDSVDPGKDISIYINSP-------GGSVY---------------AGLGIYDTMQFISSDVATIC  119 (221)
T ss_pred             EEcHHHHHHHHHHHHHHhccCCCCCEEEEEECC-------Ccchh---------------hHHHHHHHHHhcCCCEEEEE
Confidence            4678888888887777764322222  333444       33322               12345667788899999999


Q ss_pred             ccccccCCceeeccccE--EEEcCCeEEeeccee
Q psy504          139 DGSAYGGGLEMALACDI--RVAASNVRMGLVETK  170 (358)
Q Consensus       139 nG~a~GgG~~lal~cD~--riase~a~f~~pe~~  170 (358)
                      .|.|.+.|.-|++++|.  |++.+++.|.+-...
T Consensus       120 ~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~  153 (221)
T PRK14514        120 TGMAASMASVLLVAGTKGKRSALPHSRVMIHQPL  153 (221)
T ss_pred             EEEehhHHHHHHhcCCCCceeeCCCCEEEeccCC
Confidence            99999999999999986  888888888775543

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.01  E-value=0.022  Score=54.25  Aligned_cols=157  Identities=14%  Similarity=0.216  Sum_probs=95.0

Q ss_pred             ecCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHH--HHH
Q psy504           44 ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV--STL  120 (358)
Q Consensus        44 ~~~~-V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~--~~~  120 (358)
                      .++. |+++..|..-..-+++....+.+.++++.+.+. .+=+|.+... |     |+.+.+       ....+.  ...
T Consensus       117 I~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dS-g-----GaRmqE-------g~~sL~~~ak~  182 (285)
T TIGR00515       117 LYGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSAS-G-----GARMQE-------ALLSLMQMAKT  182 (285)
T ss_pred             ECCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-C-----Cccccc-------chhHHHhHHHH
Confidence            3444 455555544456789999999999999998765 4456666554 2     222221       111111  122


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCce-eeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLE-MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~-lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      ...+.++.....|.|+++-|+|.||+.. +++.+|+++|.+++.+++.-.++           +.+.+            
T Consensus       183 ~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti------------  239 (285)
T TIGR00515       183 SAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTV------------  239 (285)
T ss_pred             HHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHh------------
Confidence            2234456677899999999999999654 56799999999999887732220           11112            


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHHHHHHH
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIV  240 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~  240 (358)
                       |+.+..  +.-.++-+.+.|.|+.|+...+....+..+..
T Consensus       240 -~e~lpe--~~q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~  277 (285)
T TIGR00515       240 -REKLPE--GFQTSEFLLEHGAIDMIVHRPEMKKTLASLLA  277 (285)
T ss_pred             -cCccch--hcCCHHHHHhCCCCcEEECcHHHHHHHHHHHH
Confidence             222210  01112556788999999977665555555443

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=96.98  E-value=0.0034  Score=56.60  Aligned_cols=89  Identities=12%  Similarity=0.092  Sum_probs=64.2

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecc
Q psy504           61 ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDG  140 (358)
Q Consensus        61 al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG  140 (358)
                      .++.+...++...|..++.++..+-+.+.=.     |.|+++..               ...++..+...+.|+...+.|
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN-----SpGG~v~~---------------g~aIyd~m~~~~~~V~t~~~G   92 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN-----SPGGSVYD---------------GLGIFDTMQHVKPDVHTVCVG   92 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEe-----CCCcchhh---------------HHHHHHHHHhcCCCEEEEEEE
Confidence            3788999999999999885443343333332     22444321               234566777888999999999


Q ss_pred             ccccCCceeeccccE--EEEcCCeEEeecce
Q psy504          141 SAYGGGLEMALACDI--RVAASNVRMGLVET  169 (358)
Q Consensus       141 ~a~GgG~~lal~cD~--riase~a~f~~pe~  169 (358)
                      .|.+.|.-|++++|-  |++.+++++.+-..
T Consensus        93 ~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP  123 (196)
T PRK12551         93 LAASMGAFLLCAGAKGKRSSLQHSRIMIHQP  123 (196)
T ss_pred             EehhHHHHHHhCCCCCceecCCCCEEEEecC
Confidence            999999999999884  88888888777554

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=96.84  E-value=0.0069  Score=54.77  Aligned_cols=90  Identities=16%  Similarity=0.215  Sum_probs=65.6

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCce--EEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           61 ALNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        61 al~~~m~~eL~~~l~~~~~d~~vr--vVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      .++.++.+.+...|-.++.++.-+  -+-|-+.       |+|+.               ....++..+...+.||...+
T Consensus        35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSp-------GG~v~---------------~GlaIyd~m~~~~~~V~Ti~   92 (201)
T PRK14513         35 PIESQMANTIVAQLLLLDSQNPEQEIQMYINCP-------GGEVY---------------AGLAIYDTMRYIKAPVSTIC   92 (201)
T ss_pred             EEcHHHHHHHHHHHHHhhccCCCCCEEEEEECC-------CCchh---------------hHHHHHHHHHhcCCCEEEEE
Confidence            478889999988888887543322  2333444       34432               12445777888999999999


Q ss_pred             ccccccCCceeeccccE--EEEcCCeEEeecceecc
Q psy504          139 DGSAYGGGLEMALACDI--RVAASNVRMGLVETKLA  172 (358)
Q Consensus       139 nG~a~GgG~~lal~cD~--riase~a~f~~pe~~lG  172 (358)
                      .|.|.+.|.-|++++|-  |++.+++++-+-....|
T Consensus        93 ~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~  128 (201)
T PRK14513         93 VGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAG  128 (201)
T ss_pred             EeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCC
Confidence            99999999999999995  89999998877655433

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=96.82  E-value=0.029  Score=53.63  Aligned_cols=158  Identities=17%  Similarity=0.202  Sum_probs=94.9

Q ss_pred             eecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHH--HH
Q psy504           43 PERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV--ST  119 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~--~~  119 (358)
                      ..++.-..|.-|.+. ..-+++....+.+.++++.+.+.. +=+|.|.-. |     |+.+.+       ....+.  ..
T Consensus       117 ~I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~-lPlV~l~ds-g-----GarmqE-------gi~sL~~~ak  182 (292)
T PRK05654        117 TIEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEK-CPLVIFSAS-G-----GARMQE-------GLLSLMQMAK  182 (292)
T ss_pred             EECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcC-C-----Ccchhh-------hhhHHHhHHH
Confidence            345554444444444 567899999999999999997664 456666654 2     332221       111111  12


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCce-eeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLE-MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~-lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      ....+.++.....|.|+++-|+|.||+.. .++.+|+++|.+++.+++.-.+           .+...+|..        
T Consensus       183 ~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~--------  243 (292)
T PRK05654        183 TSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREK--------  243 (292)
T ss_pred             HHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhh--------
Confidence            22334455677899999999999999654 5777999999998877773221           011111111        


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHH
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIV  240 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~  240 (358)
                      +. +.+.      .++.+.+.|+|+.|+...+....+..+..
T Consensus       244 lp-e~~~------~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~  278 (292)
T PRK05654        244 LP-EGFQ------RAEFLLEHGAIDMIVHRRELRDTLASLLA  278 (292)
T ss_pred             hh-hhhc------CHHHHHhCCCCcEEECHHHHHHHHHHHHH
Confidence            00 1111      12556788999999977665555544443

>PRK11778 putative inner membrane peptidase; Provisional

Probab=96.82  E-value=0.005  Score=59.72  Aligned_cols=103  Identities=22%  Similarity=0.243  Sum_probs=66.7

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT  124 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~  124 (358)
                      .+.|++|.++.+=.... ...+.+++...++.+..+   .+|||+-.     |.|+.....            ......+
T Consensus        89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLrid-----SpGG~v~~s------------~~a~~~l  147 (330)
T PRK11778         89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLE-----SPGGVVHGY------------GLAASQL  147 (330)
T ss_pred             CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEe-----CCCCchhHH------------HHHHHHH
Confidence            45688888875532111 223446666666555533   46777765     234433210            0111114


Q ss_pred             HHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecc
Q psy504          125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVE  168 (358)
Q Consensus       125 ~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe  168 (358)
                      .++....||+++.+++.|..||.-+|++||-++|.+.+.++.-.
T Consensus       148 ~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIG  191 (330)
T PRK11778        148 QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIG  191 (330)
T ss_pred             HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeee
Confidence            45667889999999999999999999999999999988766543

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=96.45  E-value=0.11  Score=48.36  Aligned_cols=163  Identities=15%  Similarity=0.104  Sum_probs=93.8

Q ss_pred             EEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-HcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHH
Q psy504           39 YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAI-RGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV  117 (358)
Q Consensus        39 ~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~-~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~  117 (358)
                      .-+-+.++.-..|.=|.|..  .++.+-...+.+.+... +.+..+=+|.|.=+ +. |-.|.         .++.....
T Consensus        24 ~G~arl~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt-pG-~~~g~---------~aE~~G~~   90 (238)
T TIGR03134        24 VGSAELAGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDT-PS-QAYGR---------REELLGIN   90 (238)
T ss_pred             EEEEEECCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC-CC-CCCCH---------HHHHHHHH
Confidence            33444455555555556653  68877778888888885 44566666666655 22 33232         22333344


Q ss_pred             HHHHHHHHHHH---cCCCcEEEeeccccccCCc-eeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHH
Q psy504          118 STLRYMTCQLE---SIPVPVLAVLDGSAYGGGL-EMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA  193 (358)
Q Consensus       118 ~~~~~l~~~i~---~~~kPvIaavnG~a~GgG~-~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~  193 (358)
                      +.+.+++..+.   ..+.|+|+.|-|.+.|||+ .+.+.+|.++|-+++.++.       .+.-+++..+-+-.  ..+.
T Consensus        91 ~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~v-------m~~e~aa~I~~~~~--~~~~  161 (238)
T TIGR03134        91 QALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHV-------MDLESMARVTKRSV--EELE  161 (238)
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEe-------cCHHHHHHHHccCH--hHHH
Confidence            55555555555   4559999999999998876 4555688888887776654       33222322222222  2233


Q ss_pred             hhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          194 LYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       194 ~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      ++.   ..-+..+.    ....+.+.|+|+.|++..+
T Consensus       162 e~a---~~~~~~a~----~~~~~~~~G~vd~vi~~~~  191 (238)
T TIGR03134       162 ALA---KSSPVFAP----GIENFVKLGGVHALLDVAD  191 (238)
T ss_pred             HHH---Hhhhhhcc----CHHHHHhCCCccEEeCCCC
Confidence            332   11111110    0145789999999997544

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.023  Score=56.65  Aligned_cols=148  Identities=16%  Similarity=0.250  Sum_probs=100.4

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEe-ecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLR-SLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVlt-g~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      ++.|.++.++     +.+++.+.+.+.+.++.++++.. .++|+. -+ ++    |                ..+.+.++
T Consensus        25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldT-PG----G----------------l~~sm~~i   77 (436)
T COG1030          25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDT-PG----G----------------LLDSMRQI   77 (436)
T ss_pred             CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecC-CC----c----------------hHHHHHHH
Confidence            4568888886     45899999999999999997763 344443 33 21    1                23567788


Q ss_pred             HHHHHcCCCcEEEeec---cccccCCceeeccccEEEEcCCeEEeecceeccc-cc--Ccc-cccc------cccccc--
Q psy504          124 TCQLESIPVPVLAVLD---GSAYGGGLEMALACDIRVAASNVRMGLVETKLAI-IP--GAG-GTQR------LPRIVG--  188 (358)
Q Consensus       124 ~~~i~~~~kPvIaavn---G~a~GgG~~lal~cD~riase~a~f~~pe~~lGl-~p--~~g-~s~~------L~r~iG--  188 (358)
                      .+++.+.+.|++..|.   +.|..+|.-++++||+..+++.+.+|-...-.+- .+  ... ....      +.+.-|  
T Consensus        78 v~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN  157 (436)
T COG1030          78 VRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN  157 (436)
T ss_pred             HHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence            9999999999888874   4699999999999999999999988875432221 00  000 0001      111122  


Q ss_pred             hhhHHhhhhhhcccccccccccccchhhHhcCCceEEEec
Q psy504          189 IPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       189 ~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                      ...|.+++  -....+++       +||++.|+++-+..+
T Consensus       158 ~~~ae~~v--~~~~~l~a-------~eA~~~~vid~iA~~  188 (436)
T COG1030         158 PTWAERFV--TENLSLTA-------EEALRQGVIDLIARD  188 (436)
T ss_pred             hHHHHHHh--hhccCCCh-------hHHHhcCccccccCC
Confidence            22344555  55566666       899999999876654

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=96.21  E-value=0.023  Score=59.65  Aligned_cols=84  Identities=15%  Similarity=0.152  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccC
Q psy504           66 LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGG  145 (358)
Q Consensus        66 m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~Gg  145 (358)
                      .+.++.++++.+..|+.|++|||.-.+    +.|..+..            .+.+++.+..+....||+||..++.+ -+
T Consensus        77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~~------------~~ei~~ai~~fk~sgKpVvA~~~~~~-s~  139 (584)
T TIGR00705        77 SLFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSPH------------LVEIGSALSEFKDSGKPVYAYGTNYS-QG  139 (584)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHHH------------HHHHHHHHHHHHhcCCeEEEEEcccc-ch
Confidence            567999999999999999999998762    22433322            23344455566678999999888775 57


Q ss_pred             CceeeccccEEEEcCCeEEee
Q psy504          146 GLEMALACDIRVAASNVRMGL  166 (358)
Q Consensus       146 G~~lal~cD~riase~a~f~~  166 (358)
                      |.-||.+||-+++.+.+.+++
T Consensus       140 ~YylAs~AD~I~~~p~G~v~~  160 (584)
T TIGR00705       140 QYYLASFADEIILNPMGSVDL  160 (584)
T ss_pred             hhhhhhhCCEEEECCCceEEe
Confidence            899999999999998876654

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.05  E-value=0.025  Score=50.94  Aligned_cols=45  Identities=24%  Similarity=0.236  Sum_probs=36.2

Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEE--EEcCCeEEee
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR--VAASNVRMGL  166 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~r--iase~a~f~~  166 (358)
                      .++..+...++||...+-|.|...|.-|++++|-.  ++.+++++-.
T Consensus        76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimI  122 (200)
T COG0740          76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMI  122 (200)
T ss_pred             HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEE
Confidence            34677888999999999999999999999998754  6666665544

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=95.90  E-value=0.059  Score=55.40  Aligned_cols=107  Identities=19%  Similarity=0.269  Sum_probs=70.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCC--CchhccccCHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGA--DLKHRLTLNEDQIRSFVSTLRYMTC  125 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~--Dl~~~~~~~~~~~~~~~~~~~~l~~  125 (358)
                      |.++..+.--...++.......+.++++.+.+..-. +|.|.-.      .|.  ++.+-.    ....... .+..-..
T Consensus        59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~~P-~v~l~ds------gGa~~r~~eg~----~~l~~~g-~i~~~~~  126 (493)
T PF01039_consen   59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENGLP-LVYLVDS------GGAFLRMQEGV----ESLMGMG-RIFRAIA  126 (493)
T ss_dssp             EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHTEE-EEEEEEE------SSBCGGGGGHH----HHHHHHH-HHHHHHH
T ss_pred             EEEEEeccceecCCCCcccceeeehHHHHHHHcCCC-cEEeccc------cccccccchhh----hhhhhhH-HHHHHHH
Confidence            444444444456789999999999999999877544 4444332      244  333211    1111122 2222334


Q ss_pred             HHHcCCCcEEEeeccccccCCceeeccccEEEEcCC-eEEeec
Q psy504          126 QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLV  167 (358)
Q Consensus       126 ~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~p  167 (358)
                      .+.. ..|+|+++.|+|.|||..++..||++|+.++ +.+++.
T Consensus       127 ~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~  168 (493)
T PF01039_consen  127 RLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA  168 (493)
T ss_dssp             HHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS
T ss_pred             HHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec
Confidence            4556 9999999999999999999999999999987 776653

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK10949 protease 4; Provisional

Probab=95.33  E-value=0.08  Score=55.83  Aligned_cols=85  Identities=18%  Similarity=0.141  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccC
Q psy504           66 LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGG  145 (358)
Q Consensus        66 m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~Gg  145 (358)
                      .+.++.++++.+..|+.|++|||.-.+.    .|..+.            ..+.+++.+..+....||+||.-+.. --+
T Consensus        96 ~l~div~~i~~Aa~D~rIkgivL~i~s~----gG~~~a------------~~~eI~~ai~~fk~sGKpVvA~~~~~-~s~  158 (618)
T PRK10949         96 SLFDIVNTIRQAKDDRNITGIVLDLKNF----AGADQP------------SMQYIGKALREFRDSGKPVYAVGDSY-SQG  158 (618)
T ss_pred             cHHHHHHHHHHHhcCCCceEEEEEeCCC----CCccHH------------HHHHHHHHHHHHHHhCCeEEEEecCc-cch
Confidence            4568999999999999999999998621    122221            12334455666677899999864444 456


Q ss_pred             CceeeccccEEEEcCCeEEeec
Q psy504          146 GLEMALACDIRVAASNVRMGLV  167 (358)
Q Consensus       146 G~~lal~cD~riase~a~f~~p  167 (358)
                      +.-||.+||-+++.+.+.+++.
T Consensus       159 ~YyLASaAD~I~l~P~G~v~~~  180 (618)
T PRK10949        159 QYYLASFANKIYLSPQGVVDLH  180 (618)
T ss_pred             hhhhhhhCCEEEECCCceEEEe
Confidence            8999999999999988766543

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=95.29  E-value=0.011  Score=55.73  Aligned_cols=92  Identities=12%  Similarity=0.138  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      +.+.+-+..+.++++|+||.|=|---+||+--...+|.+++.+.++|+.      +.|.++++.++-.   ..+|.+.. 
T Consensus       175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD---~~ka~eAA-  244 (317)
T COG0825         175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKD---ASKAKEAA-  244 (317)
T ss_pred             HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcC---hhhhHHHH-
Confidence            3444556678899999999999986666654444479999999999986      5788888776654   34444442 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEec
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                        ....++|       .+.++.|+|+.|++.
T Consensus       245 --e~mkita-------~dLk~lgiID~II~E  266 (317)
T COG0825         245 --EAMKITA-------HDLKELGIIDGIIPE  266 (317)
T ss_pred             --HHcCCCH-------HHHHhCCCcceeccC
Confidence              2336778       899999999999975

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=95.17  E-value=0.66  Score=43.60  Aligned_cols=176  Identities=17%  Similarity=0.194  Sum_probs=111.4

Q ss_pred             ccccCCCcceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhc
Q psy504           26 SVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR  105 (358)
Q Consensus        26 ~~~~~~~~~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~  105 (358)
                      +-..+|..+.+..-.=.-..-.|+...++..=-.-++..-.=+.+.++++.+-.+. +.+|+++..|      |+-+.+ 
T Consensus       102 a~~~tg~~davvtg~g~i~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSG------GARMQE-  173 (294)
T COG0777         102 ARKKTGLDDAVVTGEGTINGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASG------GARMQE-  173 (294)
T ss_pred             HHhhcCCCcceEEEeeEECCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCc------chhHhH-
Confidence            33455555555543322222346666666655567788888889999999987654 6788888763      444432 


Q ss_pred             cccCHHHHHHHH--HHHHHHHHHHHcCCCcEEEeeccccccC-CceeeccccEEEEcCCeEEeecceecccccCcccccc
Q psy504          106 LTLNEDQIRSFV--STLRYMTCQLESIPVPVLAVLDGSAYGG-GLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQR  182 (358)
Q Consensus       106 ~~~~~~~~~~~~--~~~~~l~~~i~~~~kPvIaavnG~a~Gg-G~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~  182 (358)
                            ....++  ......+.++.....|.|+.+..+..|| .+.+++..|+.||-++|.+||.-.             
T Consensus       174 ------g~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGp-------------  234 (294)
T COG0777         174 ------GILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGP-------------  234 (294)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcc-------------
Confidence                  111222  2334456677888999999999999988 467999999999998887776422             


Q ss_pred             cccccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHh
Q psy504          183 LPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVW  241 (358)
Q Consensus       183 L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~  241 (358)
                        |.| .+..++-+  -.|  +.      ..+..++.|+|+.||...+....++.+...
T Consensus       235 --RVI-EQTire~L--Peg--fQ------~aEfLlehG~iD~iv~R~elr~tla~ll~~  280 (294)
T COG0777         235 --RVI-EQTIREKL--PEG--FQ------TAEFLLEHGMIDMIVHRDELRTTLASLLAK  280 (294)
T ss_pred             --hhh-hhhhcccC--Ccc--hh------hHHHHHHcCCceeeecHHHHHHHHHHHHHH
Confidence              111 11111222  222  11      126778999999999876666666655443

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=94.85  E-value=0.31  Score=50.38  Aligned_cols=111  Identities=15%  Similarity=0.247  Sum_probs=76.4

Q ss_pred             eecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR  121 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~  121 (358)
                      +.++.-.-|.=|+|. ..-+++.+..+...++++.+.+. .+=+|.|.-++|  |..|.+         .+.....+...
T Consensus       311 ri~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G--~~~g~~---------~E~~g~~~~~a  378 (512)
T TIGR01117       311 RINGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG--FLPGVN---------QEYGGIIRHGA  378 (512)
T ss_pred             EECCEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC--ccccHH---------HHHHHHHHHHH
Confidence            344443344445554 34569999999999999988764 445666655523  555533         22234455667


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeecc-----ccEEEEcCCeEEee
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALA-----CDIRVAASNVRMGL  166 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~-----cD~riase~a~f~~  166 (358)
                      +++.++....+|.|+.|-|.+.|||. ++++     +|+++|.+++.++.
T Consensus       379 ~~~~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a~~~v  427 (512)
T TIGR01117       379 KVLYAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTAEIAV  427 (512)
T ss_pred             HHHHHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCCeEee
Confidence            78888899999999999999988754 4443     89999998887776

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=94.42  E-value=0.19  Score=51.95  Aligned_cols=106  Identities=14%  Similarity=0.181  Sum_probs=66.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |+.+-.+.-=..-++.....+.+.++++.+.+..-. +|.|.-.      +|+.+.+-...    ...+.+.+...  ..
T Consensus        84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~lP-lV~l~dS------gGarm~eg~~~----l~~~~~~~~~~--~~  150 (512)
T TIGR01117        84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAP-VVGLNDS------GGARIQEAVDA----LKGYGDIFYRN--TI  150 (512)
T ss_pred             EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCCC-EEEEecC------CCCCccccchh----hhhHHHHHHHH--HH
Confidence            444444444456789999999999999999877644 4444332      13333221110    00111111111  12


Q ss_pred             HcCCCcEEEeeccccccCCceeeccccEEEEcCC-eEEee
Q psy504          128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGL  166 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~  166 (358)
                      ..-..|.|+++.|+|.||+.....+||++|+.++ +.+++
T Consensus       151 ~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~  190 (512)
T TIGR01117       151 ASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI  190 (512)
T ss_pred             HcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe
Confidence            2346899999999999999888789999999985 44544

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=94.30  E-value=0.37  Score=50.32  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             cCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           45 RPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        45 ~~~-V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      ++. |+++--+.--+.-+++....+.+.++++.+.+..- -+|.|.-. +     |+.+.+-..... ....+ ..+..-
T Consensus       127 ~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~l-PlV~l~DS-g-----Garl~~q~e~~~-~~~~~-g~if~~  197 (569)
T PLN02820        127 HGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCRL-PCIYLVDS-G-----GANLPRQAEVFP-DRDHF-GRIFYN  197 (569)
T ss_pred             CCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCC-CEEEEEeC-C-----CcCCcccccccc-hHhHH-HHHHHH
Confidence            443 44444443335678999999999999999987654 34544443 2     333321000000 00011 111111


Q ss_pred             HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcC-CeEEee
Q psy504          124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGL  166 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase-~a~f~~  166 (358)
                      ...+.....|.|+++-|+|.|||.....+||++|+++ .+.+++
T Consensus       198 ~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~  241 (569)
T PLN02820        198 QARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL  241 (569)
T ss_pred             HHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence            2235566799999999999999999999999999986 455554

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=94.04  E-value=0.22  Score=51.08  Aligned_cols=101  Identities=17%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHH
Q psy504           49 VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE  128 (358)
Q Consensus        49 ~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~  128 (358)
                      ....-+.+-+.-++..-....+.++.+.+.++....+.+..|.       |+.+.+-.. .   .+.+ -.+..-..++.
T Consensus        94 ~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsg-------Gari~~~v~-~---l~g~-g~iF~~~a~~S  161 (526)
T COG4799          94 FVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSG-------GARIQEGVP-S---LAGY-GRIFYRNARAS  161 (526)
T ss_pred             EEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEccc-------ccccccCcc-c---cccc-hHHHHHHHHhc
Confidence            3333344556778888888889999998887766656566554       444433110 0   0111 11111223344


Q ss_pred             cCCCcEEEeeccccccCCceeeccccEEEEcCCe
Q psy504          129 SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV  162 (358)
Q Consensus       129 ~~~kPvIaavnG~a~GgG~~lal~cD~riase~a  162 (358)
                      .. .|.|++|-|+|.|||+.+...||++|+.++.
T Consensus       162 g~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~  194 (526)
T COG4799         162 GV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ  194 (526)
T ss_pred             cC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence            44 9999999999999999999999999999874

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=93.17  E-value=0.5  Score=43.39  Aligned_cols=97  Identities=14%  Similarity=0.165  Sum_probs=64.4

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCce--EEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           61 ALNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        61 al~~~m~~eL~~~l~~~~~d~~vr--vVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      ..+.++.+.+...+-.++.++.-+  -+-|-+.||..|+ |-=+..            ......++..+...+-++...+
T Consensus        48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~-G~~iG~------------v~~glaIyD~m~~ik~~V~Tv~  114 (222)
T PRK12552         48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYT-GDAIGF------------ETEAFAICDTMRYIKPPVHTIC  114 (222)
T ss_pred             chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccc-cccccc------------cccHHHHHHHHHhcCCCeEEEE
Confidence            445558888888888886544322  3445555444333 310000            1123345667777888999999


Q ss_pred             ccccccCCceeeccccE--EEEcCCeEEeeccee
Q psy504          139 DGSAYGGGLEMALACDI--RVAASNVRMGLVETK  170 (358)
Q Consensus       139 nG~a~GgG~~lal~cD~--riase~a~f~~pe~~  170 (358)
                      -|.|.+.+.-|++++|-  |++.+++++-+-...
T Consensus       115 ~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~  148 (222)
T PRK12552        115 IGQAMGTAAMILSAGTKGQRASLPHATIVLHQPR  148 (222)
T ss_pred             EeehhhHHHHHHhCCCCCceecCCCcEEEeccCC
Confidence            99999999999999985  888888887775544

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=92.67  E-value=0.062  Score=46.37  Aligned_cols=41  Identities=27%  Similarity=0.330  Sum_probs=31.6

Q ss_pred             HHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeec
Q psy504          127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV  167 (358)
Q Consensus       127 i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~p  167 (358)
                      +.+..||++|.++|.|..+|+-++.+||-+++.+.+.++..
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsi   42 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSI   42 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE--
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEe
Confidence            35689999999999999899999999999999988776654

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=90.87  E-value=1.1  Score=46.17  Aligned_cols=115  Identities=18%  Similarity=0.208  Sum_probs=73.9

Q ss_pred             EeeeecCCEEEEEEcCCCCCC-CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHH
Q psy504           40 HNSPERPGIVELCMNRPQARN-ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVS  118 (358)
Q Consensus        40 ~l~~~~~~V~~Itlnrp~~~N-al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~  118 (358)
                      -+-+.+|.-.-|.=|+|.... +++.+-.....+.++.++. .++=+|.|.-+  ..|..|.+         .+.....+
T Consensus       287 g~arl~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt--pGf~~g~~---------~E~~g~~~  354 (493)
T PF01039_consen  287 GFARLGGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT--PGFMPGPE---------AERAGIIR  354 (493)
T ss_dssp             EEEEETTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE--CEB--SHH---------HHHTTHHH
T ss_pred             eeeeeCCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec--ccccccch---------hhhcchHH
Confidence            344455554445556665322 6999999999999998886 46667777765  24555533         23345667


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeeccc----cEEEEcCCeEEee
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC----DIRVAASNVRMGL  166 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~c----D~riase~a~f~~  166 (358)
                      ...+++.++..+++|+|..|-|.+.|+|.......    |+++|.++++++.
T Consensus       355 ~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~v  406 (493)
T PF01039_consen  355 AGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGV  406 (493)
T ss_dssp             HHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEES
T ss_pred             HHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeee
Confidence            78889999999999999999999999876333333    6777777766655

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=83.35  E-value=20  Score=37.63  Aligned_cols=95  Identities=15%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504           60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD  139 (358)
Q Consensus        60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn  139 (358)
                      -+++.+-.....+.++.+++ -++=+|-|.-. + .|..|.+-+         .....+...+++.++....+|.|+.|-
T Consensus       380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~-p-Gf~~G~~~E---------~~G~~~~~a~l~~A~a~~~VP~isvi~  447 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNI-T-GFMVGSRSE---------ASGIAKAGAKMVMAVACAKVPKITIIV  447 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh-cCCCEEEEEEC-C-CCCCCHHHH---------HhhHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            35778888888888888875 45666666655 2 266664432         244677888899999999999999999


Q ss_pred             cccccCCceee----ccccEEEEcCCeEEee
Q psy504          140 GSAYGGGLEMA----LACDIRVAASNVRMGL  166 (358)
Q Consensus       140 G~a~GgG~~la----l~cD~riase~a~f~~  166 (358)
                      |.|.|+|..-.    +..|++++.+++.++.
T Consensus       448 g~a~G~g~~aM~g~~~~~d~~~awp~A~i~v  478 (569)
T PLN02820        448 GGSFGAGNYGMCGRAYSPNFLFMWPNARIGV  478 (569)
T ss_pred             CCcchHHHHHhcCcCCCCCEEEECCCCeEEe
Confidence            99999864322    3567777777666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
1hzd_A	272	Crystal Structure Of Human Auh Protein, An Rna-Bind		8e-35
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		4e-31
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		1e-20
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		4e-20
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		4e-20
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		4e-20
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		4e-20
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		4e-20
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		4e-20
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		6e-20
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		6e-20
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		1e-18
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		1e-18
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		2e-18
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		4e-18
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		3e-17
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		4e-17
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		6e-17
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		2e-16
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		8e-16
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		1e-15
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		1e-15
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		4e-15
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		9e-15
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		2e-14
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		6e-14
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		6e-14
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		2e-13
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		2e-13
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		7e-13
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		1e-12
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		2e-12
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-12
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		2e-12
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		3e-12
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		3e-12
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		3e-12
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		6e-12
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		9e-12
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		2e-11
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		2e-11
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		2e-11
1ef8_A	261	Crystal Structure Of Methylmalonyl Coa Decarboxylas		2e-10
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		3e-10
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-10
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		4e-10
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		6e-10
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		6e-10
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		7e-10
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		7e-10
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		8e-10
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		8e-10
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		8e-10
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		9e-10
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		1e-09
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-09
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		2e-09
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		2e-09
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-09
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		2e-09
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-09
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		6e-09
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		1e-08
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		2e-08
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		3e-08
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		3e-08
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		5e-08
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		8e-08
3t3w_A	279	Crystal Structure Of Probable Enoyl-Coa Hydratase F		1e-07
1xx4_A	261	Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co		1e-07
3qxi_A	265	Crystal Structure Of Enoyl-Coa Hydratase Echa1 From		2e-07
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		2e-07
3h0u_A	289	Crystal Structure Of A Putative Enoyl-Coa Hydratase		2e-07
1sg4_A	260	Crystal Structure Of Human Mitochondrial Delta3-del		5e-07
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		6e-07
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		9e-07
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		1e-06
1q51_A	314	Crystal Structure Of Mycobacterium Tuberculosis Men		3e-06
1rjm_A	339	Crystal Structure Of Menb (rv0548c) From Mycobacter		3e-06
3t8a_A	334	Crystal Structure Of Mycobacterium Tuberculosis Men		4e-06
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		4e-06
3i47_A	268	Crystal Structure Of Putative Enoyl Coa HydrataseIS		7e-06
3isa_A	254	Crystal Structure Of Putative Enoyl-Coa HydrataseIS		7e-06
2pg8_A	417	Crystal Structure Of R254k Mutanat Of Dpgc With Bou		8e-06
3qk8_A	272	Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro		1e-05
2np9_A	440	Crystal Structure Of A Dioxygenase In The Crotonase		1e-05
2w3p_A	556	Boxc Crystal Structure Length = 556		2e-05
3gkb_A	287	Crystal Structure Of A Putative Enoyl-coa Hydratase		2e-05
2f6q_A	280	The Crystal Structure Of Human Peroxisomal Delta3,		3e-05
3lao_A	258	Crystal Structure Of Enoyl-Coa Hydratase From Pseud		4e-05
3hp0_A	267	Crystal Structure Of A Putative Polyketide Biosynth		4e-05
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		1e-04
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		6e-04

>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272

Iteration: 1
 Score =  144 bits (363), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 113/155 (72%)
Query: 38  IYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
           + H   E  GIV L +NR   +N+L+  L++ +  AV+A++ D++VR +++RS V  +FC
Sbjct: 12  VRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFC 71
Query: 98  AGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
           AGADLK R  ++  ++  FVS +R +   + ++PVP +A +DG A GGGLE+ALACDIRV
Sbjct: 72  AGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRV 131
Query: 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           AAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LA
Sbjct: 132 AASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLA 166

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score =  132 bits (331), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 97/147 (65%)
Query: 46  PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
           P +V++ +NR +  N+L+  L+EE+   +  I  +   R V+L    +  FCAGADLK R
Sbjct: 17  PHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKER 76
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
              NE+Q+R  VS +R     +E +P PV+A ++G A GGG E++LACD R+AA +  +G
Sbjct: 77  AGXNEEQVRHAVSXIRTTXEXVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLG 136
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLA 192
           L ET LAIIPGAGGTQRLPR++G+  A
Sbjct: 137 LTETTLAIIPGAGGTQRLPRLIGVGRA 163

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 85/147 (57%), Gaps = 5/147 (3%)
Query: 47  GIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH- 104
           GIVEL  + + ++ N  N   + E+  AV+AI+ D  V+ V++ S  KDVF  GAD+   
Sbjct: 16  GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEF 74
Query: 105 --RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
                L + ++ +       +    E + VP +A ++G A GGGLEM LA D RV A + 
Sbjct: 75  VENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSA 134
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGI 189
           ++GL E KL I PG GGT RLPR++G+
Sbjct: 135 KIGLPEVKLGIYPGFGGTVRLPRLIGV 161

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 89/162 (54%), Gaps = 6/162 (3%)
Query: 32  RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL 91
           R ++++I         ++ L +NRP ARNALN  L+ +++  +EA   D  +   ++   
Sbjct: 2   RSMSELIVSRQQR---VLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGN 58
Query: 92  VKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMAL 151
            +  F AGADL       +D   +   T   +  +L++   P++A ++G A G G E+AL
Sbjct: 59  AR-FFAAGADLNE--MAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELAL 115
Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
            CD+ VA  N R GL E  L I+PGAGGTQRL R VG  LA+
Sbjct: 116 LCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLAS 157

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Query: 31  GRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS 90
           G     II     +   +  + +NRP+A NAL   L+EE+  A+E    D  V  ++L  
Sbjct: 1   GANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG 60
Query: 91  LVKDVFCAGADLK--HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLE 148
             K  F AGAD+K     T  +     F+S   ++T     I  PV+A ++G A GGG E
Sbjct: 61  GEK-AFAAGADIKEMQNRTFQDCYSGKFLSHWDHIT----RIKKPVIAAVNGYALGGGCE 115
Query: 149 MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLD 208
           +A+ CDI  A    + G  E  L  IPGAGGTQRL R VG  LA   E +L  D +S+ D
Sbjct: 116 LAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLA--MEMVLTGDRISAQD 173
Query: 209 TR 210
            +
Sbjct: 174 AK 175

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 87/147 (59%), Gaps = 15/147 (10%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI+EL   RP   NAL+  +V EI+ AVEA   +E+VR ++L    +  F AGAD++   
Sbjct: 16  GIIELA--RPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGR-AFAAGADIQE-- 70
Query: 107 TLNEDQIRSFVSTLRYMTC-----QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
              +D IR     L ++       +L  +  P++A ++G A GGG E+AL+CD+ VA+S 
Sbjct: 71  MAKDDPIR-----LEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSA 125
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVG 188
              G  E  L ++PGAGGTQRL +++G
Sbjct: 126 AEFGFPEVNLGVMPGAGGTQRLTKLIG 152

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 9/155 (5%)
Query: 36  QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDV 95
           + I     +R GI+ L  NRPQA NALN+ ++ E+ +A   +  D ++  +++    K  
Sbjct: 5   ETILVERDQRVGIITL--NRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK-A 61
Query: 96  FCAGADLKH--RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
           F AGAD+K    LT  +     F +T      +L ++  P +A + G A GGG E+A+ C
Sbjct: 62  FAAGADIKEMADLTFADAFTADFFATW----GKLAAVRTPTIAAVAGYALGGGCELAMMC 117
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           D+ +AA   + G  E KL ++PG GG+QRL R +G
Sbjct: 118 DVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIG 152

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 9/155 (5%)
Query: 36  QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDV 95
           + I     +R GI+ L  NRPQA NALN+ ++ E+ +A   +  D ++  +++    K  
Sbjct: 4   ETILVERDQRVGIITL--NRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK-A 60
Query: 96  FCAGADLKH--RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
           F AGAD+K    LT  +     F +T      +L ++  P +A + G A GGG E+A+ C
Sbjct: 61  FAAGADIKEMADLTFADAFTADFFATW----GKLAAVRTPTIAAVAGYALGGGCELAMMC 116
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           D+ +AA   + G  E KL ++PG GG+QRL R +G
Sbjct: 117 DVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIG 151

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 9/155 (5%)
Query: 36  QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDV 95
           + I     +R GI+ L  NRPQA NALN+ ++ E+ +A   +  D ++  +++    K  
Sbjct: 25  ETILVERDQRVGIITL--NRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK-A 81
Query: 96  FCAGADLKH--RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
           F AGAD+K    LT  +     F +T      +L ++  P +A + G A GGG E+A+ C
Sbjct: 82  FAAGADIKEMADLTFADAFTADFFATW----GKLAAVRTPTIAAVAGYALGGGCELAMMC 137
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           D+ +AA   + G  E KL ++PG GG+QRL R +G
Sbjct: 138 DVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIG 172

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 11/166 (6%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--H 104
           G+++L  NRP+A NAL   L+EE+  A+E    D  V  ++L    K  F AGAD+K   
Sbjct: 18  GLIQL--NRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEK-AFAAGADIKEMQ 74
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
             T  +     F+S   ++T     I  PV+A ++G A GGG E+A+ CDI  A    + 
Sbjct: 75  NRTFQDCYSGKFLSHWDHIT----RIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQF 130
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTR 210
           G  E  L  IPGAGGTQRL R VG  LA   E +L  D +S+ D +
Sbjct: 131 GQPEILLGTIPGAGGTQRLTRAVGKSLA--MEMVLTGDRISAQDAK 174

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 11/166 (6%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--H 104
           G+++L  NRP+A NAL   L+EE+  A+E    D  V  ++L    K  F AGAD+K   
Sbjct: 16  GLIQL--NRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEK-AFAAGADIKEMQ 72
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
             T  +     F+S   ++T     I  PV+A ++G A GGG E+A+ CDI  A    + 
Sbjct: 73  NRTFQDCYSGKFLSHWDHIT----RIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQF 128
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTR 210
           G  E  L  IPGAGGTQRL R VG  LA   E +L  D +S+ D +
Sbjct: 129 GQPEILLGTIPGAGGTQRLTRAVGKSLA--MEMVLTGDRISAQDAK 172

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 99/196 (50%), Gaps = 21/196 (10%)
Query: 31  GRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS 90
           G    +I+  N+ ER  +  L +NRPQARNAL+A L +    A+     D++V  V++  
Sbjct: 3   GSMTDEILLSNTEER--VRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITG 60
Query: 91  LVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMA 150
               VFCAG DLK              S L  ++ +  ++  PV+  ++G+A  GGLE+A
Sbjct: 61  -ADPVFCAGLDLKEL---------GGSSALPDISPRWPALTKPVIGAINGAAVTGGLELA 110
Query: 151 LACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTR 210
           L CDI +A+ N R      ++ ++P  G + RLP+ VGI LA      L  D +S+ D  
Sbjct: 111 LYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMS--LTGDYLSAADA- 167
Query: 211 YMWCTPYRRGLVVTLV 226
                  R GLV  +V
Sbjct: 168 ------LRAGLVTEVV 177

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 99/196 (50%), Gaps = 21/196 (10%)
Query: 31  GRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS 90
           G    +I+  N+ ER  +  L +NRPQARNAL+A L +    A+     D++V  V++  
Sbjct: 20  GSMTDEILLSNTEER--VRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITG 77
Query: 91  LVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMA 150
               VFCAG DLK              S L  ++ +  ++  PV+  ++G+A  GGLE+A
Sbjct: 78  -ADPVFCAGLDLKEL---------GGSSALPDISPRWPALTKPVIGAINGAAVTGGLELA 127
Query: 151 LACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTR 210
           L CDI +A+ N R      ++ ++P  G + RLP+ VGI LA      L  D +S+ D  
Sbjct: 128 LYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMS--LTGDYLSAADA- 184
Query: 211 YMWCTPYRRGLVVTLV 226
                  R GLV  +V
Sbjct: 185 ------LRAGLVTEVV 194

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 11/166 (6%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--H 104
           G+++L  NRP+A NAL   L++E+  A++    D  V  ++L    K  F AGAD+K   
Sbjct: 44  GLIQL--NRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDK-AFAAGADIKEMQ 100
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
            L+  +     F+    ++T     +  PV+A ++G A+GGG E+A+ CDI  A    + 
Sbjct: 101 NLSFQDCYSSKFLKHWDHLT----QVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQF 156
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTR 210
              E  +  IPGAGGTQRL R VG  LA   E +L  D +S+ D +
Sbjct: 157 AQPEILIGTIPGAGGTQRLTRAVGKSLA--MEMVLTGDRISAQDAK 200

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 45  RP--GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
           RP  G+  + ++RP A NALN TL  E+L A      D E+  +++    +  F AGAD+
Sbjct: 15  RPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSER-AFAAGADI 73
Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
              +TL   Q R     L      L  +  P++A + G A GGG E+A+ CD+ +AA   
Sbjct: 74  AEMVTLTPHQARE--RNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTA 131
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVG 188
           R G  E  L I+PG GGTQRL R VG
Sbjct: 132 RFGQPEITLGILPGLGGTQRLTRAVG 157

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
           R  ++ + +NRP+ARNA+NA +   +  A+E  + D EVR V+L       FCAGADLK 
Sbjct: 16  RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKA 75
Query: 104 --HRLTL-NEDQIR-SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
              R  L + D     F   +R+       I  P +A ++G+A GGG E+ALA D+ VA 
Sbjct: 76  IARRENLYHPDHPEWGFAGYVRHF------IDKPTIAAVNGTALGGGTELALASDLVVAD 129
Query: 160 SNVRMGLVETKLAIIPGAGG----TQRLPRIVGIPLAALYEDLLNNDCMSSLDTR 210
              + GL E K  +I  AGG     ++LPR V + L      LL  + +S+   R
Sbjct: 130 ERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRL------LLTGEPLSAAAAR 178

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
           R  ++ + +NRP+ARNA+NA +   +  A+E  + D EVR V+L       FCAGADLK 
Sbjct: 16  RGNVMVITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKA 75
Query: 104 --HRLTL-NEDQIR-SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
              R  L + D     F   +R+       I  P +A ++G+A GGG E+ALA D+ VA 
Sbjct: 76  IARRENLYHPDHPEWGFAGYVRHF------IDKPTIAAVNGTALGGGTELALASDLVVAD 129
Query: 160 SNVRMGLVETKLAIIPGAGG----TQRLPRIVGIPLAALYEDLLNNDCMSSLDTR 210
              + GL E K  +I  AGG     ++LPR V + L      LL  + +S+   R
Sbjct: 130 ERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRL------LLTGEPLSAAAAR 178

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 60  NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVST 119
           NA ++ +  ++   ++ +  D+ +R V++    +  F AGAD+K   ++ E +  + ++ 
Sbjct: 27  NAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEGR-FFSAGADIKEFTSVTEAKQATELAQ 85
Query: 120 LRYMTCQ-LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAG 178
           L  +T + +E    PV+A + G+A GGGLE A +C  R A  + ++GL E  L +IPG  
Sbjct: 86  LGQVTFERVEKCSKPVIAAIHGAALGGGLEFAXSCHXRFATESAKLGLPELTLGLIPGFA 145
Query: 179 GTQRLPRIVG 188
           GTQRLPR VG
Sbjct: 146 GTQRLPRYVG 155

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
Query: 44  ERPGIVEL-CMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
           ER G V L  ++RP ARNA+N  +   +  A+E  + D EV  V++       FCAGADL
Sbjct: 20  ERRGNVALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGAGDKSFCAGADL 79
Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
           K  ++  E+   +      +       I  P +A ++G+A GGG E+ALA D+ +A  + 
Sbjct: 80  KA-ISRGENLYHAEHPEWGFAGYVHHFIDKPTIAAVNGTALGGGSELALASDLVIACESA 138
Query: 163 RMGLVETKLAIIPGAGG----TQRLPRIVGIPLAALYEDLLNNDCM 204
             GL E K  +I GAGG     ++LPR V + L    E +  +D +
Sbjct: 139 SFGLPEVKRGLIAGAGGVFRIVEQLPRKVALELVLTGEPMTASDAL 184

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 35  TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKD 94
           T I Y  S +  GI ++ +NRPQ RNA     V+E + A+   R D+ V  ++L      
Sbjct: 26  TDIRYEKSTD--GIAKITINRPQVRNAFRPLTVKEXIQALADARYDDNVGVIILTGEGDK 83
Query: 95  VFCAGADLKHRLTLNEDQIRSFVSTLRYMTC--QLESIPVPVLAVLDGSAYGGGLEMALA 152
            FCAG D K R      Q  S V  L  +    Q+ + P PV+A + G + GGG  +   
Sbjct: 84  AFCAGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVAXVAGYSIGGGHVLHXX 143
Query: 153 CDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           CD+ +AA N   G    K+    G  G     RIVG
Sbjct: 144 CDLTIAAENAIFGQTGPKVGSFDGGWGASYXARIVG 179

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 34  LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
              I Y  S +  GI ++ +NRPQ RNA     V+E++ A+   R D+ +  ++L     
Sbjct: 26  FEDIRYEKSTD--GIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGD 83
Query: 94  DVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMAL 151
             FC+G D K R      +  S V  L  +  Q  + + P PV+A++ G + GGG  + +
Sbjct: 84  KAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHM 143
Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
            CD+ +AA N   G    K+    G  G   + RIVG
Sbjct: 144 MCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVG 180

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 34  LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
              I Y  S +  GI ++ +NRPQ RNA     V+E++ A+   R D+ +  ++L     
Sbjct: 22  FEDIRYEKSTD--GIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGD 79
Query: 94  DVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMAL 151
             FC+G D K R      +  S V  L  +  Q  + + P PV+A++ G + GGG  + +
Sbjct: 80  KAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHM 139
Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
            CD+ +AA N   G    K+    G  G   + RIVG
Sbjct: 140 MCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVG 176

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
           GI ++ +NRP+ RNA     V E++ A    R D+ V  ++L       FC+G D K   
Sbjct: 22  GIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRG 81
Query: 104 HRLTLNEDQI-RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
           H   + EDQI R  V  L+ +   +  IP PV+A++ G A GGG  + + CD+ +AA N 
Sbjct: 82  HGGYVGEDQIPRLNVLDLQRL---IRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNA 138
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVG 188
             G    K+       G+  L RIVG
Sbjct: 139 IFGQTGPKVGSFDAGYGSGYLARIVG 164

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
           GI ++ +NRP+  NA     V E++ A    R D  +  ++L       FC+G D K   
Sbjct: 21  GIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGDQKVRG 80
Query: 104 HRLTLNEDQI-RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
           H   + ED+I R  V  L+ +   +  IP PV+A++ G A GGG  + + CD+ +AA N 
Sbjct: 81  HGGYVGEDEIPRLNVLDLQRL---IRVIPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNA 137
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVG 188
             G    K+    G  G   L RIVG
Sbjct: 138 IFGQTGPKVGSFDGGYGAGYLARIVG 163

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI E+ ++  ++ N+ +    +E   A++ IR D +++ V++ S V   F AGAD+    
Sbjct: 18  GIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIVXSDVPKFFSAGADINFLR 76
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV-RMG 165
           + +      F         ++   P   +A L+G   GGGLE ALACD+R       ++G
Sbjct: 77  SADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEXALACDLRFXGDEAGKIG 136
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLA 192
           L E  L ++ G GGTQRL R++G   A
Sbjct: 137 LPEVSLGVLAGTGGTQRLARLIGYSRA 163

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Query: 48  IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT 107
           ++ + +NRP+ RNALN  L+  +   +  I   +++R V++   + D F AG DL     
Sbjct: 26  VLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHG-IGDHFSAGLDLSELRE 82
Query: 108 LNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV 167
            +  +      T   +  +++   VPV+A L G+  GGGLE+A A  IRVA ++    L 
Sbjct: 83  RDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALP 142
Query: 168 ETKLAIIPGAGGTQRLPRIVGI 189
           E    I  G GG+ RLPR++G+
Sbjct: 143 EGSRGIFVGGGGSVRLPRLIGV 164

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 25/217 (11%)
Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
           L +NRPQ+RNAL+A L      A+   + +++   V++ +    VFCAG DLK      E
Sbjct: 22  LTLNRPQSRNALSAELRSTFFRALSDAQ-NDDDVDVVIVTGADPVFCAGLDLKELGDTTE 80
Query: 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
                    L  ++ +   +  PV+  ++G+A  GGLE+AL CDI +A+ N +      +
Sbjct: 81  ---------LPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHAR 131
Query: 171 LAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK-- 228
           + ++P  G + RLP+ VG+ LA      L  D +S+ D         R GLV  +V    
Sbjct: 132 VGLMPTWGLSVRLPQKVGVGLARRMS--LTGDYLSAQDA-------LRAGLVTEVVAHDD 182
Query: 229 -FSQPVHISALIVWNYNASIEM---SYCGFSLLNTWG 261
             +    ++A IV N   ++     SY     L T G
Sbjct: 183 LLTAARRVAASIVGNNQKAVRALLDSYHRIDALQTGG 219

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 10/154 (6%)
Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
           + ++ P+ +N L+A L   +L A+ A   +  +  ++L+S  +  F +G  L+  L    
Sbjct: 17  ITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICAS 76
Query: 111 DQ----IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
           DQ    +R  +  L +   ++ + P   +A+++G AYGGG  M LACD R+A    +   
Sbjct: 77  DQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLE 136
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN 200
              K+ I P  G +  LPRI+G      YE  +N
Sbjct: 137 NFHKMGISPDLGASYFLPRIIG------YEQTMN 164

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 5/170 (2%)
Query: 44  ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
           ER G +V L MNRP  RNAL+  +V +   A + I  D+ +R  +L +     +C G DL
Sbjct: 14  ERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAIL-TGAGSAYCVGGDL 72
Query: 103 KHRLTLNEDQIRSF-VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
                + +        +T+        ++  P++A ++G+  GGG EM    DIRV+  +
Sbjct: 73  SDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEH 132
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRY 211
              GL E +  ++PGAG   RL R   IP     E +L  + +++ +  +
Sbjct: 133 ATFGLPEVQRGLVPGAGSMVRLKRQ--IPYTKAMEMILTGEPLTAFEAYH 180

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 44  ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
           ER G +  + +NRPQARNA+N      + +A      DE     +L       FCAGADL
Sbjct: 13  ERNGPVTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCG-NGGTFCAGADL 71
Query: 103 KHRLTLNEDQI-RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
           K   T   + + R+    +      L     PV+A + G A  GGLE+AL CD+RVA  +
Sbjct: 72  KAFGTAEANAVHRTGPGPMGPSRMMLSK---PVIAAVSGYAVAGGLELALWCDLRVAEQD 128
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVG 188
              G+   +  +    GGT RLPR++G
Sbjct: 129 AVFGVFCRRWGVPLIDGGTVRLPRLIG 155

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 48  IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT 107
           ++ + +NRP+ RNA+N     E++   + I  D + R V++    K +F +G DL   + 
Sbjct: 14  VLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGK-MFTSGIDL---MD 69
Query: 108 LNED--------------QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
           +  D               +R  +S  +     +E  P PV+A + G   GGG+++  AC
Sbjct: 70  MASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISAC 129
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           DIR    +    + E  + +    G  QRLP+++G
Sbjct: 130 DIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIG 164

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 7/141 (4%)
Query: 48  IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT 107
           ++ + ++RP+  NA++  ++EE+   +     DE VR VLL    +  FC+G DL    T
Sbjct: 16  VLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGR-AFCSGGDLTGGDT 74
Query: 108 LNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV 167
                  + V  +R +T    S+P PV+A + G+A G G  +ALACD+ VAA      L 
Sbjct: 75  AGAADAANRV--VRAIT----SLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLA 128
Query: 168 ETKLAIIPGAGGTQRLPRIVG 188
            T++ ++P  G +  LP ++G
Sbjct: 129 FTRVGLMPDGGASALLPLLIG 149

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
           +R  ++ + +NRP ARNA+N  + + +  A + +    ++   ++     + FCAG DLK
Sbjct: 13  QRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGN-FCAGMDLK 71
Query: 104 HRLTLNEDQIRSFVS---TLRYMTCQLESIP--VPVLAVLDGSAYGGGLEMALACDIRVA 158
                      +FVS    L        ++P   P++A ++G A  GG E+ L+CD+ VA
Sbjct: 72  -----------AFVSGEAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVA 120
Query: 159 ASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDT 209
             + + G+ E K  ++ GAGG  RLP    IP     E  L  +  ++ D 
Sbjct: 121 GRSAKFGIPEVKRGLVAGAGGLLRLPNR--IPYQVAMELALTGESFTAEDA 169

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 48  IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR-- 105
           ++ + +NRP  RNA+N     E++     I  D + R V++    K +F AG DL     
Sbjct: 41  VLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGK-MFTAGIDLMDMAS 99
Query: 106 --LTLNEDQI-------RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
             L    D +       R  ++  +     +E  P PV+A + G   GGG+++  ACDIR
Sbjct: 100 DILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIR 159
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
             A +    + E  + +    G  QRLP+++G
Sbjct: 160 YCAQDAFFQVKEVDVGLAADVGTLQRLPKVIG 191

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 10/154 (6%)
Query: 39  YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA 98
           Y   P    ++ LC N P   NA++ T++ E+   ++    D  V+ +++     + FCA
Sbjct: 24  YLRLPHSLAMIRLC-NPPV--NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCA 79
Query: 99  GADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVA 158
           GAD+ H  +     +      L  +  +++    PVLA + G A GGGLE+AL C  R+A
Sbjct: 80  GADI-HGFSAFTPGL-----ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIA 133
Query: 159 ASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            +  R+GL E  L I+PGA GTQ LPR+VG+P+A
Sbjct: 134 NAKARVGLPEVTLGILPGARGTQLLPRVVGVPVA 167

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 10/154 (6%)
Query: 39  YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA 98
           Y   P    ++ LC N P   NA++ T++ E+   ++    D  V+ +++     + FCA
Sbjct: 9   YLRLPHSLAMIRLC-NPPV--NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCA 64
Query: 99  GADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVA 158
           GAD+ H  +     +      L  +  +++    PVLA + G A GGGLE+AL C  R+A
Sbjct: 65  GADI-HGFSAFTPGL-----ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIA 118
Query: 159 ASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            +  R+GL E  L I+PGA GTQ LPR+VG+P+A
Sbjct: 119 NAKARVGLPEVTLGILPGARGTQLLPRVVGVPVA 152

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 10/195 (5%)
Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK---HRLT 107
           + MNRP  RNAL+  +++ ++ A + +  D ++RC +L +     FCAG DLK    +  
Sbjct: 33  VTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCIL-TGAGGYFCAGMDLKAATKKPP 91
Query: 108 LNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV 167
            +  +  S+  +      +   +  P++A ++G A  GG E+    DIRVAA + + G+ 
Sbjct: 92  GDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGIS 151
Query: 168 ETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVI 227
           E K ++ P  G   RL R   IP     + LL    +++ + + M       G VV    
Sbjct: 152 EAKWSLYPMGGSAVRLVRQ--IPYTVACDLLLTGRHITAAEAKEMGLV----GHVVPDGQ 205
Query: 228 KFSQPVHISALIVWN 242
             ++ + I+ +I  N
Sbjct: 206 ALTKALEIAEIIAAN 220

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 48  IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT 107
           ++ + + RP+ RNALN+ LVEE+  A+    GD   R ++L       FCAGADL     
Sbjct: 31  VLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQ-GTAFCAGADLS---- 84
Query: 108 LNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV 167
             +     +   L  +   +++ P+PV+  ++G A G GL++A+ CD+RV A +      
Sbjct: 85  -GDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFP 143
Query: 168 ETKLAIIPGAGGTQRLPRIVG 188
            +K  +       +RL  +VG
Sbjct: 144 TSKYGLALDNWSIRRLSSLVG 164

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 11/164 (6%)
Query: 32  RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL--- 88
           +    I+Y+ +    GI ++ +NRP  RNA     V E+  A    R D  +  VLL   
Sbjct: 7   KHYDDILYYKAG---GIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGA 63
Query: 89  --RSLVKDVFCAGADLKHRLTLN--EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144
              S  K  FC+G D   R      +DQ    ++ L      + S+P  V+A++ G A G
Sbjct: 64  GPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRL-IRSMPKVVIALVAGYAIG 122
Query: 145 GGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           GG  + L CD+ +AA N   G    K+    G  G+  L RIVG
Sbjct: 123 GGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVG 166

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 10/154 (6%)
Query: 39  YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA 98
           Y   P    ++ LC N P   NA++ T++ E+   ++    D  V+ +++     + FCA
Sbjct: 24  YLRLPHSLAMIRLC-NPPV--NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCA 79
Query: 99  GADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVA 158
           GAD+ H  +     +      L  +  +++    PVLA + G A GGGLE+AL C  R+A
Sbjct: 80  GADI-HGFSAFTPGL-----ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIA 133
Query: 159 ASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            +  R+GL    L I+PGA GTQ LPR+VG+P+A
Sbjct: 134 NAKARVGLPAVTLGILPGARGTQLLPRVVGVPVA 167

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G+  L ++RP   NA+   +  EI+ A + +   +++  V+L     ++F AG D+    
Sbjct: 33  GLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFG-GHEIFSAGDDMPELR 90
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
           TLN  +  +           + +IP P +A + G A G GL +ALA D RV+  NV+ G 
Sbjct: 91  TLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGA 150
Query: 167 VETKLAIIPGAGGTQRLPRIVG 188
            E    +IPG GG  RL R+VG
Sbjct: 151 TEILAGLIPGGGGMGRLTRVVG 172

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 16/222 (7%)
Query: 37  IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
           ++  +  ER G+V L +NRPQA NAL+  ++  +  A   +  DE VR V+L +  K  F
Sbjct: 26  LLLQDRDER-GVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGK-AF 83
Query: 97  CAGADLKH-RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
           CAG DLK  R   + +      +    +   ++ +P PV+A + G A   G ++   CD+
Sbjct: 84  CAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDL 143
Query: 156 RVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCT 215
            VA  + R  +    + +     G   L R VG    A +E L+  + +S+ D + +   
Sbjct: 144 AVATRDARFAVSGINVGLFCSTPGVA-LSRNVG--RKAAFEMLVTGEFVSADDAKGL--- 197
Query: 216 PYRRGLVVTLVIKFSQPVHISAL---IVWNYNASIEMSYCGF 254
               GLV  +V   +    I A+   IV    A++ M    F
Sbjct: 198 ----GLVNRVVAPKALDDEIEAMVSKIVAKPRAAVAMGKALF 235

>pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 60  NALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KDVFCAGADLKHRLTLNEDQIRSFVS 118
           NAL+   +++++ A+  +    E+RC++LR+     VF AG D+ H L        S+  
Sbjct: 26  NALSKVFIDDLMQALSDL-NRPEIRCIILRAPSGSKVFSAGHDI-HELPSGGRDPLSYDD 83
Query: 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAG 178
            LR +T  ++  P P++++++GS +GG  EM ++ D+ +AAS     +    L +     
Sbjct: 84  PLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLV 143
Query: 179 GTQRLPRIVG 188
           G   L R  G
Sbjct: 144 GIHNLTRDAG 153

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 48  IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT 107
           +  + +NRP ARNA++      +L A      D E    +L       FCAGADLK   T
Sbjct: 21  VTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWG-DNGTFCAGADLKAMGT 79
Query: 108 LNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV 167
              +++         M      +  PV+A + G A  GG+E+AL CD+RV   +  +G+ 
Sbjct: 80  DRGNELHPHGPG--PMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVF 137
Query: 168 ETKLAIIPGAGGTQRLPRIVG 188
             +  +    GGT RLPR++G
Sbjct: 138 CRRWGVPLIDGGTIRLPRLIG 158

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 20/161 (12%)
Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           RP I  + +NRP+  NA+   ++      +  I  D +VR V++    K  FC+GAD K 
Sbjct: 31  RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKG-FCSGADQKS 89
Query: 105 R--------LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
                    LT     +RS +  L  +   L  +  PV+A ++G+A GGGL +ALACD+R
Sbjct: 90  AGPIPHIGGLTQPTIALRS-MELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVR 148
Query: 157 VA-------ASNVRMGLVETKLA---IIPGAGGTQRLPRIV 187
           VA       A+ +  GL  ++L    ++P A GT R   I+
Sbjct: 149 VASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIM 189

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI  + +NRP+ RNA++ TL  E++  +E +  D     VL+ +   + + AG DLK   
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 107 -------TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
                   + +++IR   S  ++   ++ +   P +A+++G  +GGG    +ACD+ + A
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYA--KPTIAMVNGWCFGGGFSPLVACDLAICA 134
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALY 195
                GL E    I PG   ++ +   VG   + +Y
Sbjct: 135 DEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMY 170

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI  + +NRP+ RNA++ TL  E++  +E +  D     VL+ +   + + AG DLK   
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 107 -------TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
                   + +++IR   S  ++   ++ +   P +A+++G  +GGG    +ACD+ + A
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYA--KPTIAMVNGWCFGGGFSPLVACDLAICA 134
Query: 160 SNVRMGLVETKLAIIPG 176
                GL E    I PG
Sbjct: 135 DEATFGLSEINWGIPPG 151

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI  + +NRP+ RNA++ TL  E++  +E +  D     VL+ +   + + AG DLK   
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 107 -------TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
                   + +++IR   S  ++   ++ +   P +A+++G  +GGG    +ACD+ + A
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYA--KPTIAMVNGWCFGGGFSPLVACDLAICA 134
Query: 160 SNVRMGLVETKLAIIPG 176
                GL E    I PG
Sbjct: 135 DEATFGLSEINWGIPPG 151

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI  + +NRP+ RNA++ TL  E++  +E +  D     VL+ +   + + AG DLK   
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 107 -------TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
                   + +++IR   S  ++   ++ +   P +A+++G  +GGG    +ACD+ + A
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYA--KPTIAMVNGWCFGGGFSPLVACDLAICA 134
Query: 160 SNVRMGLVETKLAIIPG 176
                GL E    I PG
Sbjct: 135 DEATFGLSEINYGIPPG 151

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI  + +NRP+ RNA++ TL  E++  +E +  D     VL+ +   + + AG DLK   
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 107 -------TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
                   + +++IR   S  ++   ++ +   P +A+++G  +GGG    +ACD+ + A
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYA--KPTIAMVNGWCFGGGFAPLVACDLAICA 134
Query: 160 SNVRMGLVETKLAIIPG 176
                GL E    I PG
Sbjct: 135 DEATFGLSEINWGIPPG 151

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 8/149 (5%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G++ L +NRP+  NA+   L++ +  A++    D EVR +LL    +  F AG DL    
Sbjct: 9   GVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGR-AFSAGQDL---- 63
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIP---VPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
           T   D+   + + LR     +E++     P++  ++G A G G+ +AL  D+R+AA    
Sbjct: 64  TEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGAS 123
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
                 ++ ++P +G +  LPR+VG+  A
Sbjct: 124 FTTAFVRIGLVPDSGLSFLLPRLVGLAKA 152

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI  + +NRP+ RNA++ TL  E++  +E +  D     VL+ +   + + AG DLK   
Sbjct: 18  GIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 107 -------TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
                   + +++IR   S  ++   ++ +   P +A+++G  +GGG    +ACD+ + A
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYA--KPTIAMVNGWCFGGGFSPLVACDLAICA 134
Query: 160 SNVRMGLVETKLAIIPG 176
                GL E    I PG
Sbjct: 135 DEATFGLSEINWGIPPG 151

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI  + +NRP+ RNA++ TL  E++  +E +  D     VL+ +   + + AG DLK   
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 107 -------TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
                   + +++IR   S  ++   ++ +   P +A+++G  +GGG    +ACD+ + A
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYA--KPTIAMVNGWCFGGGFAPLVACDLAICA 134
Query: 160 SNVRMGLVETKLAIIPG 176
                GL E    I PG
Sbjct: 135 DEATFGLSEINWGIPPG 151

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI  + +NRP+ RNA++ TL  E++  +E +  D     VL+ +   + + AG DLK   
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 107 -------TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
                   + +++IR   S  ++   ++ +   P +A+++G  +GGG    +ACD+ + A
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYA--KPTIAMVNGWCFGGGFAPLVACDLAICA 134
Query: 160 SNVRMGLVETKLAIIPG 176
                GL E    I PG
Sbjct: 135 DEATFGLSEINYGIPPG 151

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 48  IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT 107
           +  L +N P  RNAL+  LV ++   +     D  VR V+L +     FCAGADL    +
Sbjct: 21  VARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVL-AHTGGTFCAGADLSEAGS 79
Query: 108 LNE--DQIRSFVSTLRYMTCQLESI---PVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
                      V   R M   + +I    +PV+A +DG    GG  +  ACDI VA    
Sbjct: 80  GGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRS 139
Query: 163 RMGLVETKLAIIP 175
              L E ++ + P
Sbjct: 140 SFALTEARIGVAP 152

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI  + +NRP+ RNA++ TL  E++  +E +  D     VL+ +   + + AG DLK   
Sbjct: 18  GIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 107 -------TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
                   + +++IR   S  ++   ++ +   P +A+++G  +GGG    +ACD+ + A
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYA--KPTIAMVNGWCFGGGFAPLVACDLAICA 134
Query: 160 SNVRMGLVETKLAIIPG 176
                GL E    I PG
Sbjct: 135 DEATFGLSEINWGIPPG 151

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 11/149 (7%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G++ L +NRP+  N+ N  +  ++   ++ +  D+ +RC+LL    +  FCAG DL  R 
Sbjct: 24  GVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRG-FCAGQDLNDR- 81
Query: 107 TLNEDQIRSF----VSTLRY---MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
             N D         +S  R+   +  +L  +P PV+  ++G A G G  +AL  DI +AA
Sbjct: 82  --NVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAA 139
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
            + +  +  +KL +IP  GGT  LPR+ G
Sbjct: 140 RSAKFVMAFSKLGLIPDCGGTWLLPRVAG 168

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G+ E+ +  P+ RNAL+   ++E+  A+     D+ V  V++    +D FCAG  L+  +
Sbjct: 12  GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITG-AEDAFCAGFYLR-EI 69
Query: 107 TLNE------DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
            L++      D  R      + M  ++  +  PVLA ++G A GGGL ++LA D+ + A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGI 189
           + +       + I      +  L RIVG+
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGM 158

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G+ E+ +  P+ RNAL+   ++E+  A+     D+ V  V++    +D FCAG  L+  +
Sbjct: 12  GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITG-AEDAFCAGFYLR-EI 69
Query: 107 TLNE------DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
            L++      D  R        M  ++  +  PVLA ++G A GGGL ++LA D+ + A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGI 189
           + +       + I      +  L RIVG+
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGM 158

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
           E+  +  + +N P+ RN L+      +L A++ +  D  VR V+L    K  F AGADL 
Sbjct: 5   EKGHVAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGK-AFSAGADLA 63
Query: 104 --HRLTL--NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
              R+T    E+  R  +S  R +  ++ + P P +A ++G A  GG  +ALACD+ V  
Sbjct: 64  FLERVTELGAEENYRHSLSLXR-LFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXD 122
Query: 160 SNVRMGLVETKLAII 174
              R+G  E K+  +
Sbjct: 123 EEARLGYTEVKIGFV 137

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G+ E+ +  P+ RNAL+   ++E+  A+     D+ V  V++    +D FCAG  L+  +
Sbjct: 12  GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITG-AEDAFCAGFYLR-EI 69
Query: 107 TLNE------DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
            L++      D  R        M  ++  +  PVLA ++G A GGGL ++LA D+ + A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGI 189
           + +       + I      +  L RIVG+
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGM 158

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           R G+  L ++ P  RN+    L  ++  A + +  D  VR ++L       FC+GA +  
Sbjct: 14  RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTG-APPAFCSGAQISA 72
Query: 105 RL-TLNEDQIRSF-VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
              T    +   F  S ++    +L +   PV+A ++G A G G+ +AL  DIR+ A   
Sbjct: 73  AAETFAAPRNPDFSASPVQPAAFELRT---PVIAAVNGHAIGIGMTLALHADIRILAEEG 129
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSS 206
           R  + + +  + P A     LPR+VG  +AA  E LL     S+
Sbjct: 130 RYAIPQVRFGVAPDALAHWTLPRLVGTAVAA--ELLLTGASFSA 171

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTL 108
           + ++RP A NAL    V+EI  A+    GD EV  V++ +     FCAG D+   H   +
Sbjct: 37  ITLSRPAALNALTCAXVQEIDAALRGWIGDPEVELVVIDAEGPRAFCAGGDIAELHGRGV 96
Query: 109 NEDQI--RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
             D    + F         ++ + P P++++  G   GGG+ +      R+     ++  
Sbjct: 97  AGDHAFGQDFWRVEYRXNDRIAAFPKPIVSLXQGFTXGGGVGLGCHARHRIVGETSQISX 156
Query: 167 VETKLAIIPGAGGTQRLPRIVG 188
            E  + ++P  GGT  L R  G
Sbjct: 157 PECAIGLVPDVGGTHLLARAPG 178

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
           + +NRP+  NAL    + +I   ++    D E   ++++      FCAG D+  R+    
Sbjct: 19  ITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDI--RVISEA 76
Query: 111 DQIRSFVSTLRY-----MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
           ++ +  ++ + +     +   + S   P +A++ G   GGG+ +++    RVA       
Sbjct: 77  EKAKQKIAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGGVGLSVHGQFRVATEKCLFA 136
Query: 166 LVETKLAIIPGAGGTQRLPRIVG 188
             ET + + P  GG   LPR+ G
Sbjct: 137 XPETAIGLFPDVGGGYFLPRLQG 159

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Query: 60  NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVS- 118
           N+L+  ++  + +  E      +V+ +++    K  F  G D+     + +  ++   + 
Sbjct: 29  NSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVKEPKAG 87
Query: 119 --TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPG 176
             ++  +T  LE+   P +A +DG A GGGLE+A+AC  R++A   ++GL E +L +IPG
Sbjct: 88  YISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPG 147
Query: 177 AGGTQRLPRIVGIPLA 192
            GGTQRLPR+VG+  A
Sbjct: 148 FGGTQRLPRLVGLTKA 163

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
           L +NRP   NA    +  E+  A++    D  VRCV++    +  FCAG DL     + E
Sbjct: 16  LTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGR-AFCAGEDLS---GVTE 71
Query: 111 DQIRSFVSTLRY--MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVE 168
           +     V   RY  M   L  +  PV+A ++G+A G G+ +ALACD R+ +         
Sbjct: 72  EMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAF 131
Query: 169 TKLAIIPGAGGTQRLPRIVG 188
             + ++P AG    LPR+VG
Sbjct: 132 IHVGLVPDAGHLYYLPRLVG 151

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD---LK 103
           G+  L +NRP+A N+L   +V  +   + A   D+ VR VLL    +   CAG D   + 
Sbjct: 18  GVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIY 77
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
           H    +  + R F      +   +   P P ++++DG   GGG+ +    ++RV     +
Sbjct: 78  HSAKADGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTK 137
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVG 188
           M + E  +  IP  GGT  L R  G
Sbjct: 138 MAMPEVGIGFIPDVGGTYLLSRAPG 162

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 48  IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT 107
           I  + +NRP+A NA N  L++E+  A      D EV+ ++LR+  K  F AG DL+    
Sbjct: 33  IATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKH-FSAGHDLRGGGE 91
Query: 108 LNEDQIRSFV---STLRYM--TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
           + E     F+      RY+  T +  ++P P +A + G    GGL +   CD+ +A+ + 
Sbjct: 92  VPEKISLEFIIQHEARRYLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLILASDDA 151

>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 21  PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
           P++      E R    I Y  S     I  + +NRP+A NA N  L++E+  A      D
Sbjct: 6   PSWRRPSRPEQRTEMYIDYDVSDR---IATITLNRPEAANAQNPELLDELDAAWTRAAED 62
Query: 81  EEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV---STLRYMTCQL--ESIPVPVL 135
            +V  ++LR+  K  F AG DL+    + +     F+    + RY+   L   ++P P +
Sbjct: 63  NDVSVIVLRANGKH-FSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSI 121
Query: 136 AVLDGSAYGGGLEMALACDIRVAASNV 162
           A + G    GGL +   CD+ +AA + 
Sbjct: 122 AAVQGRCISGGLLLCWPCDLIIAAEDA 148

>pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI  +    P   N+L+   + E + ++E +  D+ +R V+L S    +F AG DL    
Sbjct: 15  GIAVMKFKNPPV-NSLSLEFLTEFVISLEKLENDKSIRGVILTSERPGIFSAGLDLMEMY 73
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR--M 164
             N      +   ++ +  +L    + +++ ++G++  GG  MAL CD R+ A N +  +
Sbjct: 74  GRNPAHYAEYWKAVQELWLRLYLSNLTLISAINGASPAGGCLMALTCDYRIMADNSKYTI 133
Query: 165 GLVETKLAII 174
           GL E+ L I+
Sbjct: 134 GLNESLLGIV 143

>pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 8/163 (4%)
Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
           +R  I+ + +NRP+A+N++NA +   +  A++ +  D  +   +L       FCAG DLK
Sbjct: 21  QRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTG-AGGSFCAGMDLK 79
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
                 E+     V   R +         P++A ++G A  GG E+ALA D+ VAA +  
Sbjct: 80  A-FARGEN----VVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSA 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSS 206
            G+ E K  ++ G GG  RLP    IP A   E  L  D +S+
Sbjct: 135 FGIPEVKRGLVAGGGGLLRLPER--IPYAIAMELALTGDNLSA 175

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 31  GRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS 90
           GR+ ++    ++ +  GI  + ++ P+ RN L+  +++ + + +       +++ +++ S
Sbjct: 26  GRRESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIII-S 84
Query: 91  LVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTC-----QLESIPVPVLAVLDGSAYGG 145
               VF +G DLK    L E+Q R + + + + TC      + + PVPV+A+++G A   
Sbjct: 85  AEGPVFSSGHDLKE---LTEEQGRDYHAEV-FQTCSKVMMHIRNHPVPVIAMVNGLATAA 140
Query: 146 GLEMALACDIRVAASNVRMGLVETKLAII---PGAGGTQRLPRIVGIPL 191
           G ++  +CDI VA+           + +    PG    + +PR V + +
Sbjct: 141 GCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPRKVALEM 189

>pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 60  NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV-- 117
           N +   +V +++  +E +      R V+  S   D F    D+        +  ++    
Sbjct: 29  NLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPG 88
Query: 118 -STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIP 175
            ++L  +  +L  +P   +A L G A G G E  LACD+R A+  N  +G  E  +   P
Sbjct: 89  DASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPP 148
Query: 176 GAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWC 214
           GAG  Q L R++G    AL   L ++D  + L  RY W 
Sbjct: 149 GAGAIQHLTRLLGRGR-ALEAVLTSSDFDADLAERYGWV 186

>pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 60  NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVST 119
           N+L+   + E++ ++E +  D+  R V+L S    VF AG DL      +      +   
Sbjct: 26  NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKA 85
Query: 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR--MGLVETKLAII 174
           ++ +  +L    + +++ ++G+   GG  +AL CD R+ A N R  +GL ET+L II
Sbjct: 86  VQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGII 142

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 10/127 (7%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-- 104
           G++ L + R  A + L+   +  +  A+    GD+ V  +++    + +FCAG DLK   
Sbjct: 16  GVLTLTLGRAPA-HPLSRAXIAALHDALRRAXGDDHVHVLVIHGPGR-IFCAGHDLKEIG 73
Query: 105 RLTLNEDQIRSFVSTLRYMTCQ-----LESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
           R   + D+ R+FV+ L +  C      L   P P +A+++G A   GL++  ACD+  A+
Sbjct: 74  RHRADPDEGRAFVTDL-FEACSALXLDLAHCPKPTIALVEGIATAAGLQLXAACDLAYAS 132
Query: 160 SNVRMGL 166
              R  L
Sbjct: 133 PAARFCL 139

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
           + +NRP  RNA + T++EE+  A+     D ++R  +L      +F AG DL        
Sbjct: 22  IGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYG-EGPLFTAGLDLASVAA--- 77
Query: 111 DQIRSFVS-----TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
            +I+   S      +         +  P+L  + G     G+E+ALA DI +A       
Sbjct: 78  -EIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFA 136
Query: 166 LVETKLAIIPGAGGTQRLPRIVG 188
            +E    I P  G T R PR  G
Sbjct: 137 QLEVNRGIYPFGGATIRFPRTAG 159

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G++ L +NRP+A+NAL   L   I  A++    +++VR V+LR    D F AG D+K  +
Sbjct: 14  GVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHD-FTAGNDMKDFM 72
Query: 107 TLNED-------QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
              ++       Q+  FV  L     +L     P++  + G A G G+ + L  D+  A 
Sbjct: 73  GFVQNPNAGPAGQVPPFV--LLKSAARLSK---PLIIAVKGVAIGIGVTILLQADLVFAD 127
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
           +     +    L + P  G +Q L +  G   AA
Sbjct: 128 NTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAA 161

>pdb|1Q51|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Acetoacetyl-Coenzyme A, A Key Enzyme In Vitamin K2 Biosynthesis Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 19/177 (10%)
Query: 34  LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS--- 90
           LT I YH   +    V +  NRP+ RNA     V+E+   ++  R   +V  VLL     
Sbjct: 34  LTDITYHRHVD-DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGP 92
Query: 91  LVKD---VFCAGADLKHR-----------LTLNEDQIRSFVSTLRYMTCQLESIPVPVLA 136
             KD    FC+G D + R                D  R+    +  +   +  +P  V+ 
Sbjct: 93  SPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVIC 152
Query: 137 VLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           +++G A GGG  + + CD+ +A+    R    +  +    G  G+  L R VG   A
Sbjct: 153 LVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFA 209

>pdb|1RJM|A Chain A, Crystal Structure Of Menb (rv0548c) From Mycobacterium Tuberculosis Length = 339

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 19/177 (10%)
Query: 34  LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS--- 90
           LT I YH   +    V +  NRP+ RNA     V+E+   ++  R   +V  VLL     
Sbjct: 59  LTDITYHRHVD-DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGP 117
Query: 91  LVKD---VFCAGADLKHR-----------LTLNEDQIRSFVSTLRYMTCQLESIPVPVLA 136
             KD    FC+G D + R                D  R+    +  +   +  +P  V+ 
Sbjct: 118 SPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVIC 177
Query: 137 VLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           +++G A GGG  + + CD+ +A+    R    +  +    G  G+  L R VG   A
Sbjct: 178 LVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFA 234

>pdb|3T8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 19/177 (10%)
Query: 34  LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS--- 90
           LT I YH   +    V +  NRP+ RNA     V+E+   ++  R   +V  VLL     
Sbjct: 54  LTDITYHRHVD-DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGP 112
Query: 91  LVKD---VFCAGADLKHRLTLN--------EDQIR-SFVSTLRYMTCQ--LESIPVPVLA 136
             KD    FC+G D + R             D +  +    L  +  Q  +  +P  V+ 
Sbjct: 113 SPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVIC 172
Query: 137 VLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           +++G A GGG  + + CD+ +A+    R    +  +    G  G+  L R VG   A
Sbjct: 173 LVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFA 229

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-RLTLN 109
           L +NRP+A NA N  L +    A+     D +V  VLL    +  F AG DL   +  + 
Sbjct: 19  LTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRG-FSAGTDLAEMQARIT 77
Query: 110 EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVET 169
           +          R +   L   P P++  ++G   G G  +    D+   +S  R+    T
Sbjct: 78  DPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFT 137
Query: 170 KLAIIPGAGGTQRLPRIVG 188
            L + P A  +  LP++VG
Sbjct: 138 SLGVAPEAASSYLLPQLVG 156

>pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 10/132 (7%)
Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-----HR 105
           L MNR    NA +  L+ E+   +++   D  VR ++L++  K  F AGADL        
Sbjct: 17  LTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKH-FSAGADLTWMQSMAN 75
Query: 106 LTLNEDQIRSFV-STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
            T  E+   S V   L Y   Q    P P +A++ G+A+GGG  +A ACDI +A+++ R 
Sbjct: 76  FTEEENLEDSLVLGNLMYSISQ---SPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARF 132
Query: 165 GLVETKLAIIPG 176
              E KL +IP 
Sbjct: 133 CFSEVKLGLIPA 144

>pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 5/145 (3%)
Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
            RP      ++RP+ RNAL+A LVE ++  V+A    E+V  ++     ++ F AG D  
Sbjct: 13  RRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAH-REQVPLLVFAGAGRN-FSAGFDFT 70
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
              T +E  +   +  +  +  ++   P   LA+  G  +G G+++  AC  R       
Sbjct: 71  DYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAG 130
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVG 188
             +   K  ++    GT+R   IVG
Sbjct: 131 FRMPGLKFGLVL---GTRRFRDIVG 152

>pdb|2PG8|A Chain A, Crystal Structure Of R254k Mutanat Of Dpgc With Bound Substrate Analog Length = 417

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV--------KDVF 96
           R G+  L M R    NA +   V+++ TAV+    D  VR  LLR  V        K VF
Sbjct: 163 RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVF 222
Query: 97  CAGADLKH----RLTLNEDQIRSFVSTLRYMTCQL------------ESIPVPVLAVLDG 140
            AG +LK+     ++L +  +R  +  +  +   +              I  P +A +DG
Sbjct: 223 SAGINLKYLSQGGISLVDFLMRKELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDG 282
Query: 141 SAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
            A GGG ++ L  D  +A+S+    L   K  IIPGA    RL R  G
Sbjct: 283 FAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANL-RLGRFAG 329

>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 15/187 (8%)
Query: 43  PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
           P   G++ L ++ P   N++   +  ++      I  D +VR VL+R   K  F +G   
Sbjct: 19  PGEHGVLNLVLDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGK-AFSSGGSF 76
Query: 103 K---HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
           +     +   E +IR  +   R +   L ++  PV++ + G A G GL +AL  DI VA+
Sbjct: 77  ELIDETIGDYEGRIR-IMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVAS 135
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRR 219
           +  ++    TKL +  G       P +VG+  A  Y  LL  + +S  +         R 
Sbjct: 136 ATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYY--LLTCETLSGEEAE-------RI 186
Query: 220 GLVVTLV 226
           GLV T V
Sbjct: 187 GLVSTCV 193

>pdb|2NP9|A Chain A, Crystal Structure Of A Dioxygenase In The Crotonase Superfamily Length = 440

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV--------KDVF 96
           R G+  L M R    NA +   V+++ TAV+    D  VR  LLR  V        K VF
Sbjct: 174 RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVF 233
Query: 97  CAGADLKH----RLTLNEDQIRSFVSTLRYMTCQL------------ESIPVPVLAVLDG 140
            AG +LK+     ++L +  +R  +  +  +   +              I  P +A +DG
Sbjct: 234 SAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDG 293
Query: 141 SAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
            A GGG ++ L  D  +A+S+    L   K  IIPGA    RL R  G
Sbjct: 294 FAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANL-RLGRFAG 340

>pdb|2W3P|A Chain A, Boxc Crystal Structure Length = 556

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 69  EILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADL------KHRLTLNEDQIRSFVSTLR 121
           E+  A++ IR +  EVR V+L SL   VFC+GA++       H   +N      F +  R
Sbjct: 62  ELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVN---FCKFTNETR 118
Query: 122 Y-MTCQLESIPVPVLAVLDGSAYGGGLEMALACD----IRVAASNVRMGLVETKLAIIPG 176
             +        +  LA ++G+  GGG E+ALACD    +   +S+V +  V   L ++PG
Sbjct: 119 NGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPL-LGVLPG 177
Query: 177 AGGTQRL 183
            GG  R+
Sbjct: 178 TGGLTRV 184

>pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G+  + ++ P   N + AT++ E+ T +  +  D  VR ++  S   + F A  D+  R+
Sbjct: 18  GVARIILDNPPV-NVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDM--RI 74
Query: 107 TLNEDQIRSFVSTLRYMTCQLESI-------PVPVLAVLDGSAYGGGLE-MALACDIRVA 158
               D ++   ++        +++       P   +  L G A GGG E +A A     A
Sbjct: 75  GEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAA 134
Query: 159 ASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA---ALYEDLLNNDCMSSLDTRYMWC 214
           A    +G +E  + IIPG GGTQ L   VG   A    L  DL + +  +S    Y W 
Sbjct: 135 AETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAAS----YGWI 189

>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI ++  NRP+ +NA+N     EI  A++A   D+ +  VL  +   D + +G DL +  
Sbjct: 35  GITKIXFNRPKKKNAINTEXYHEIXRALKAASKDDSIITVLTGN--GDYYSSGNDLTNFT 92
Query: 107 TLN----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
            +     E++ ++    LR         P P++AV++G A G  + +    D   A+   
Sbjct: 93  DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 152
Query: 163 RMGLVETKLAIIPGAGGTQRLPRI 186
                 + L   P    +   P+I
Sbjct: 153 TFHTPFSHLGQSPEGCSSYTFPKI 176

>pdb|3LAO|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Pseudomonas Aeruginosa Pa01 Length = 258

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 14/152 (9%)
Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
           + ++R   RNA ++  + ++  A       EE RC +L       F  G      L L E
Sbjct: 25  IGLDRAGKRNAFDSAXLADLALAXGEYERSEESRCAVL-------FAHGEHFTAGLDLXE 77
Query: 111 DQIRSFVSTLRYMTCQLESIPV-------PVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
              +   S  RY    ++   V       P++  + G+ +  G+E+ L  DI VAA   R
Sbjct: 78  LAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELXLNADIAVAARGTR 137
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAALY 195
              +E    I P  G T R PR  G   A  Y
Sbjct: 138 FAHLEVLRGIPPLGGSTVRFPRAAGWTDAXRY 169

>pdb|3HP0|A Chain A, Crystal Structure Of A Putative Polyketide Biosynthesis Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis Length = 267

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTL 108
           +  +RP+A N +N TL+EE L  +        V  V+L  L  +VFC GAD +  ++   
Sbjct: 20  ITFHRPEANNTINDTLIEECLQVLNQCE-TSTVTVVVLEGL-PEVFCFGADFQEIYQEXK 77
Query: 109 NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVE 168
              +  S    L  +  +L++ P   ++ + G    GGL    A DI +A       L E
Sbjct: 78  RGRKQASSQEPLYDLWXKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSE 137
Query: 169 TKLAIIPG 176
               + P 
Sbjct: 138 LLFGLYPA 145

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 51  LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
           + +NRP A NAL+  ++ E+  A      D+ V  +L+ +     FC+GAD+K    + E
Sbjct: 24  ITLNRPDALNALSPHMITELRAAYHEAENDDRV-WLLVVTGTGRAFCSGADVKE---IPE 79
Query: 111 DQI----RSFVSTLRYMTCQLESIP------VPVLAVLDGSAYGGGLEMALACDIRVAAS 160
           D      R ++ST        E  P       PVL  ++G   G G++     DI +A+ 
Sbjct: 80  DGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASE 139
Query: 161 NVRMGLVETKLAIIPG---AGGTQRLPRIVGIPLA 192
                     + ++ G      ++ LPR + + +A
Sbjct: 140 QATFFDPHVSIGLVAGRELVRVSRVLPRSIALRMA 174

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 17/196 (8%)
Query: 55  RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD----LKHRLTLNE 110
           R   +NALN  +++EI+ A+ +   D+    ++L S    VFC G D    +KH      
Sbjct: 41  RSTEKNALNTEVIKEIVNALNSAAADDSK--LVLFSAAGSVFCCGLDFGYFVKHLRNNRN 98
Query: 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
                 V T++           P++  ++G A G G  +   CD+  A          T 
Sbjct: 99  TASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTT 158
Query: 171 LAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLV--VTLVIK 228
               P    +   P+++G   A+  E L+    +++ +     C    +GLV  V L   
Sbjct: 159 FGQSPDGCSSITFPKMMG--KASANEMLIAGRKLTAREA----CA---KGLVSQVFLTGT 209
Query: 229 FSQPVHISALIVWNYN 244
           F+Q V I    + +YN
Sbjct: 210 FTQEVMIQIKELASYN 225

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	2e-65
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	4e-63
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	3e-53
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	2e-51
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	1e-50
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	2e-50
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	3e-50
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	6e-50
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	2e-49
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	3e-49
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	9e-49
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	2e-48
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-48
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	2e-48
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	2e-48
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	3e-48
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	4e-48
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	4e-48
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	1e-47
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	1e-47
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	2e-47
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	2e-47
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	2e-47
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	4e-47
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	4e-47
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	4e-47
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	6e-47
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	8e-47
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	9e-47
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	9e-47
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	9e-47
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	2e-46
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	2e-46
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	3e-46
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	3e-46
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	3e-46
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	4e-46
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	4e-46
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	5e-46
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	2e-45
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	2e-45
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	2e-45
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	3e-45
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-45
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	1e-44
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	1e-44
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	3e-44
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	3e-44
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	3e-44
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	7e-44
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	1e-43
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	1e-43
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	2e-43
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	2e-43
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	3e-43
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	3e-43
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	4e-43
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	1e-42
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	2e-42
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	3e-42
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	3e-42
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	5e-42
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	1e-41
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	6e-41
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	1e-40
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	2e-40
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	2e-40
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	2e-39
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	1e-38
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	4e-38
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	1e-06
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	4e-35
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	3e-21
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	3e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score =  207 bits (530), Expect = 2e-65
 Identities = 81/166 (48%), Positives = 117/166 (70%), Gaps = 1/166 (0%)

Query: 28  SKEGRKLTQIIYHNSPE-RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCV 86
           S E +   ++   +  E   GIV L +NR   +N+L+  L++ +  AV+A++ D++VR +
Sbjct: 1   SSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTI 60

Query: 87  LLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGG 146
           ++RS V  +FCAGADLK R  ++  ++  FVS +R +   + ++PVP +A +DG A GGG
Sbjct: 61  IIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGG 120

Query: 147 LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           LE+ALACDIRVAAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LA
Sbjct: 121 LELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLA 166

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score =  201 bits (513), Expect = 4e-63
 Identities = 68/147 (46%), Positives = 98/147 (66%)

Query: 46  PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
           P +V++ +NR +  N+L+  L+EE+   +  I  +   R V+L    +  FCAGADLK R
Sbjct: 17  PHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKER 76

Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
             +NE+Q+R  VS +R     +E +P PV+A ++G A GGG E++LACD R+AA +  +G
Sbjct: 77  AGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLG 136

Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLA 192
           L ET LAIIPGAGGTQRLPR++G+  A
Sbjct: 137 LTETTLAIIPGAGGTQRLPRLIGVGRA 163

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score =  175 bits (447), Expect = 3e-53
 Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
             GI E+ ++  ++ N+ +    +E   A++ IR D +++ V++ S V   F AGAD+  
Sbjct: 16  EDGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINF 74

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VR 163
             + +      F         ++   P   +A L+G   GGGLEMALACD+R       +
Sbjct: 75  LRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGK 134

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           +GL E  L ++ G GGTQRL R++G   A
Sbjct: 135 IGLPEVSLGVLAGTGGTQRLARLIGYSRA 163

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  170 bits (434), Expect = 2e-51
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 4/150 (2%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
             + + ++ P+ +N L+A L   +L A+ A   +  +  ++L+S  +  F +G  L+  L
Sbjct: 13  DALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLL 72

Query: 107 TLNEDQ----IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
               DQ    +R  +  L +   ++ + P   +A+++G AYGGG  M LACD R+A    
Sbjct: 73  ICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRA 132

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           +      K+ I P  G +  LPRI+G    
Sbjct: 133 KFLENFHKMGISPDLGASYFLPRIIGYEQT 162

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score =  169 bits (430), Expect = 1e-50
 Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 2/148 (1%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
             G+  L ++RP   NA+   +  EI+ A + +   +++  V+L    + +F AG D+  
Sbjct: 31  DQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHE-IFSAGDDMPE 88

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
             TLN  +  +           + +IP P +A + G A G GL +ALA D RV+  NV+ 
Sbjct: 89  LRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKF 148

Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           G  E    +IPG GG  RL R+VG   A
Sbjct: 149 GATEILAGLIPGGGGMGRLTRVVGSSRA 176

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score =  168 bits (429), Expect = 2e-50
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 3/148 (2%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
              ++ + +NRP+ RNALN  L+  +   +  I   +++R V++   + D F AG DL  
Sbjct: 23  VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHG-IGDHFSAGLDLSE 79

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
               +  +      T   +  +++   VPV+A L G+  GGGLE+A A  IRVA ++   
Sbjct: 80  LRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYY 139

Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            L E    I  G GG+ RLPR++G+   
Sbjct: 140 ALPEGSRGIFVGGGGSVRLPRLIGVARM 167

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score =  167 bits (426), Expect = 3e-50
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
              G+  +    P   N+L+   + E++ ++E +  D+  R V+L S    VF AG DL 
Sbjct: 11  AGAGVAVMKFKNPPV-NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLT 69

Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
                +      +   ++ +  +L    + +++ ++G+   GG  +AL CD R+ A N R
Sbjct: 70  EMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPR 129

Query: 164 --MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
             +GL ET+L II        L   +G   A
Sbjct: 130 YCIGLNETQLGIIAPFWLKDTLENTIGHRAA 160

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score =  166 bits (424), Expect = 6e-50
 Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 3/148 (2%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
              +  + + RP   NAL+  +V EI+ AVEA   +E+VR ++L    +  F AGAD++ 
Sbjct: 12  EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGR-AFAAGADIQE 70

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
               +  ++    +       +L  +  P++A ++G A GGG E+AL+CD+ VA+S    
Sbjct: 71  MAKDDPIRLEWL-NQFADWD-RLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEF 128

Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           G  E  L ++PGAGGTQRL +++G   A
Sbjct: 129 GFPEVNLGVMPGAGGTQRLTKLIGPKRA 156

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  165 bits (420), Expect = 2e-49
 Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
             G+V++ M    +RN  + ++VE +      +  +++ + V+L       F +GA  + 
Sbjct: 10  GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGN-YFSSGASKEF 68

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
            +     ++             +    +P++A + G ++GGGL + L  D  V +     
Sbjct: 69  LIRKTRGEVEVL----DLSG-LILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVY 123

Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
                K    P    +  L   +G  LA 
Sbjct: 124 ATNFMKYGFTPVGATSLILREKLGSELAQ 152

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score =  165 bits (420), Expect = 3e-49
 Identities = 59/156 (37%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 37  IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
           II     +   +  + +NRP+A NAL   L+EE+  A+E    D  V  ++L    K  F
Sbjct: 6   IITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEK-AF 64

Query: 97  CAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
            AGAD+K           S    L +    +  I  PV+A ++G A GGG E+A+ CDI 
Sbjct: 65  AAGADIKEMQNRTFQDCYSG-KFLSHWD-HITRIKKPVIAAVNGYALGGGCELAMMCDII 122

Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            A    + G  E  L  IPGAGGTQRL R VG  LA
Sbjct: 123 YAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLA 158

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score =  163 bits (416), Expect = 9e-49
 Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKD-VFCAGADLK 103
              +  +  N  +  NAL+   +++++ A+  +   E +RC++LR+     VF AG D+ 
Sbjct: 11  INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIH 69

Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
              +   D   S+   LR +T  ++  P P++++++GS +GG  EM ++ D+ +AAS   
Sbjct: 70  ELPSGGRDP-LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTST 128

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
             +    L +     G   L R  G  + 
Sbjct: 129 FSMTPVNLGVPYNLVGIHNLTRDAGFHIV 157

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score =  163 bits (415), Expect = 2e-48
 Identities = 56/149 (37%), Positives = 78/149 (52%), Gaps = 3/149 (2%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
              G+  + ++RP A NALN TL  E+L A      D E+  +++    +  F AGAD+ 
Sbjct: 16  PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSER-AFAAGADIA 74

Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
             +TL   Q R   + L      L  +  P++A + G A GGG E+A+ CD+ +AA   R
Sbjct: 75  EMVTLTPHQARER-NLLSGWD-SLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTAR 132

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            G  E  L I+PG GGTQRL R VG   A
Sbjct: 133 FGQPEITLGILPGLGGTQRLTRAVGKAKA 161

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score =  163 bits (416), Expect = 2e-48
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 4/154 (2%)

Query: 37  IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
           I Y  S +  GI ++ +NRPQ RNA     V+E++ A+   R D+ +  ++L       F
Sbjct: 29  IRYEKSTD--GIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAF 86

Query: 97  CAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMALACD 154
           C+G D K R      +  S V  L  +  Q  + + P PV+A++ G + GGG  + + CD
Sbjct: 87  CSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCD 146

Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           + +AA N   G    K+    G  G   + RIVG
Sbjct: 147 LTIAADNAIFGQTGPKVGSFDGGWGASYMARIVG 180

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score =  163 bits (416), Expect = 2e-48
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 7/154 (4%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
             G+  + ++ P   N + AT++ E+ T +  +  D  VR ++  S   + F A  D++ 
Sbjct: 16  EHGVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRI 74

Query: 105 RLTLNEDQIRSFVSTLRYMTCQ-----LESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
              ++  Q  +  +       Q     +   P   +  L G A GGG E   A D+  AA
Sbjct: 75  GEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAA 134

Query: 160 S-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           +    +G +E  + IIPG GGTQ L   VG   A
Sbjct: 135 AETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRA 168

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  162 bits (413), Expect = 2e-48
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 5/144 (3%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           RP      ++RP+ RNAL+A LVE ++  V+A    E+V  ++     +  F AG D   
Sbjct: 14  RPAAWTFTLSRPEKRNALSAELVEALIDGVDAA-HREQVPLLVFAGAGR-NFSAGFDFTD 71

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
             T +E  +   +  +  +  ++   P   LA+  G  +G G+++  AC  R        
Sbjct: 72  YETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGF 131

Query: 165 GLVETKLAIIPGAGGTQRLPRIVG 188
            +   K  ++    GT+R   IVG
Sbjct: 132 RMPGLKFGLVL---GTRRFRDIVG 152

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  163 bits (414), Expect = 3e-48
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%)

Query: 28  SKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVL 87
           S    +   +         GI  + +NRP+ RNA++ TL  E++  +E +  D     ++
Sbjct: 2   STYEGRWKTVKVE---IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLV 58

Query: 88  LRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ-----LESIPVPVLAVLDGSA 142
           L    +  + AG DLK      +         +R    Q     L     P +A+++G  
Sbjct: 59  LTGAGE-AWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWC 117

Query: 143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           +GGG    +ACD+ + A     GL E    I PG   ++ +   VG   +
Sbjct: 118 FGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQS 167

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  162 bits (412), Expect = 4e-48
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 10/148 (6%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
              +  L +NRPQ+RNAL+A L      A+   + D++V  V++      VFCAG DLK 
Sbjct: 16  TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP-VFCAGLDLKE 74

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
                E            ++ +   +  PV+  ++G+A  GGLE+AL CDI +A+ N + 
Sbjct: 75  LGDTTELP---------DISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKF 125

Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
                ++ ++P  G + RLP+ VG+ LA
Sbjct: 126 ADTHARVGLMPTWGLSVRLPQKVGVGLA 153

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  162 bits (413), Expect = 4e-48
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 3/149 (2%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G++ L +NRP+A+NAL   L   I  A++    +++VR V+LR      F AG D+K  +
Sbjct: 14  GVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEH-DFTAGNDMKDFM 72

Query: 107 TLNEDQIRSFVSTLRYMTC--QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
              ++        +           +  P++  + G A G G+ + L  D+  A +    
Sbjct: 73  GFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALF 132

Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
            +    L + P  G +Q L +  G   AA
Sbjct: 133 QIPFVSLGLSPEGGASQLLVKQAGYHKAA 161

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  161 bits (410), Expect = 1e-47
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
              ++ + + RP+ RNALN+ LVEE+  A+    GD   R ++L       FCAGADL  
Sbjct: 28  AEAVLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQGT-AFCAGADLSG 85

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
                      +   L  +   +++ P+PV+  ++G A G GL++A+ CD+RV A +   
Sbjct: 86  D-----AFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFF 140

Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
               +K  +       +RL  +VG   A
Sbjct: 141 QFPTSKYGLALDNWSIRRLSSLVGHGRA 168

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score =  160 bits (408), Expect = 1e-47
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
           E+  +  + +N P+ RN L+  +   +L A++ +  D  VR V+L    K  F AGADL 
Sbjct: 5   EKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGK-AFSAGADLA 63

Query: 104 HRLTLNE---DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
               + E   ++      +L  +  ++ + P P +A ++G A  GG  +ALACD+ V   
Sbjct: 64  FLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDE 123

Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
             R+G  E K+  +     +  L R VG   A
Sbjct: 124 EARLGYTEVKIGFVAA-LVSVILVRAVGEKAA 154

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score =  160 bits (408), Expect = 2e-47
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
              I    +N   A NA+++ ++ ++   ++ +  D+ +R V++    +  F AGAD+K 
Sbjct: 13  EDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGR-FFSAGADIKE 70

Query: 105 RLTLNE-DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
             ++ E  Q        +    ++E    PV+A + G+A GGGLE A++C +R A  + +
Sbjct: 71  FTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAK 130

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           +GL E  L +IPG  GTQRLPR VG   A
Sbjct: 131 LGLPELTLGLIPGFAGTQRLPRYVGKAKA 159

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  159 bits (406), Expect = 2e-47
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 2/149 (1%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
              +  + ++ P   N  + TL   +  A+     D+ VR V++    +  F AG D   
Sbjct: 7   SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNE 66

Query: 105 RLTLN-EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
              L+  + I  ++  +  +   + ++  P +A +DG A G G + AL  D R+ AS   
Sbjct: 67  VKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTAN 126

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
             + E K  I    G    L    G    
Sbjct: 127 FVMPELKHGIGCSVGAAI-LGFTHGFSTM 154

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  160 bits (408), Expect = 2e-47
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 11/154 (7%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
              +  + +NRP + N++N  L   +    + +  D   R  ++    R+     F AG 
Sbjct: 35  DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRA-----FSAGG 89

Query: 101 DLKH--RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVA 158
           D  +   L+ + D     +   R +   +    +PV+A ++G A G G  +    DI   
Sbjct: 90  DFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYI 149

Query: 159 ASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           A N  +     ++ ++   GG    P  + + LA
Sbjct: 150 AENAYLADPHVQVGLVAADGGPLTWPLHISLLLA 183

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score =  160 bits (406), Expect = 4e-47
 Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 37  IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
           I Y       GI ++ +NRP+ RNA     V E++ A    R D+ V  ++L       F
Sbjct: 15  IKYE---FYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAF 71

Query: 97  CAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMALACD 154
           C+G D K R              L  +  Q  +  IP PV+A++ G A GGG  + + CD
Sbjct: 72  CSGGDQKKRGHGGYVGEDQI-PRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCD 130

Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           + +AA N   G    K+       G+  L RIVG   A
Sbjct: 131 LTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKA 168

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score =  160 bits (408), Expect = 4e-47
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 5/148 (3%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
              ++    N P   N +   +V +++  +E +      R V+  S   D F    D+  
Sbjct: 15  DGTVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTK 73

Query: 105 RLTLNEDQIRSFVSTLRYMTC---QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS- 160
                 +  ++       +     +L  +P   +A L G A G G E  LACD+R A+  
Sbjct: 74  VPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRE 133

Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           N  +G  E  +   PGAG  Q L R++G
Sbjct: 134 NAILGQPEVGIGAPPGAGAIQHLTRLLG 161

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score =  160 bits (406), Expect = 4e-47
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           +  ++ + +NRP+ RNA+N     E++   + I  D + R V++    K +F +G DL  
Sbjct: 11  QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGK-MFTSGIDLMD 69

Query: 105 RLTL-----------NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
             +                +R  +S  +     +E  P PV+A + G   GGG+++  AC
Sbjct: 70  MASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISAC 129

Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           DIR    +    + E  + +    G  QRLP+++G
Sbjct: 130 DIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIG 164

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  160 bits (406), Expect = 6e-47
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
           RP I  + +NRP+  NA+   ++      +  I  D +VR V++    +      FC+GA
Sbjct: 31  RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKG-----FCSGA 85

Query: 101 DLKHRLTLNE-------DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
           D K    +               +  L  +   L  +  PV+A ++G+A GGGL +ALAC
Sbjct: 86  DQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALAC 145

Query: 154 DIRVAASNVRMGLVETKLAIIPG-AGGTQRLPRIVGIPLAA 193
           D+RVA+ +           +     G +  LPR +G   A+
Sbjct: 146 DVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRAS 186

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  159 bits (404), Expect = 8e-47
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 4/150 (2%)

Query: 46  PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
            G++ L ++ P   N++   +  ++      I  D +VR VL+R   K  F +G   +  
Sbjct: 22  HGVLNLVLDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGK-AFSSGGSFELI 79

Query: 106 --LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
                + +     +   R +   L ++  PV++ + G A G GL +AL  DI VA++  +
Sbjct: 80  DETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAK 139

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
           +    TKL +  G       P +VG+  A 
Sbjct: 140 IIDGHTKLGVAAGDHAAICWPLLVGMAKAK 169

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score =  159 bits (404), Expect = 9e-47
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 7/150 (4%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
              +  + +NRPQA NALN+ ++ E+ +A   +  D ++  +++    K  F AGAD+K 
Sbjct: 32  DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK-AFAAGADIKE 90

Query: 104 -HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
              LT  +     F +T      +L ++  P +A + G A GGG E+A+ CD+ +AA   
Sbjct: 91  MADLTFADAFTADFFATWG----KLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTA 146

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           + G  E KL ++PG GG+QRL R +G   A
Sbjct: 147 KFGQPEIKLGVLPGMGGSQRLTRAIGKAKA 176

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score =  158 bits (403), Expect = 9e-47
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 10/153 (6%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
              +V L MNRP  RNAL+  +V +   A + I  D+ +R  +L     +     +C G 
Sbjct: 16  DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSA-----YCVGG 70

Query: 101 DLKHRLTLNEDQIRSFVSTLRYMT-CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
           DL     + +                   ++  P++A ++G+  GGG EM    DIRV+ 
Sbjct: 71  DLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSD 130

Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            +   GL E +  ++PGAG   RL R +    A
Sbjct: 131 EHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKA 163

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  158 bits (401), Expect = 2e-46
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 4/151 (2%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
            RPG++E+   R +  NA+   L   +      +   E VR VLLR     VF AG    
Sbjct: 17  PRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG-VFSAGGSFG 74

Query: 104 HR--LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
               +  + + +       R +     + P PV+A ++  A G GL +ALA DI V    
Sbjct: 75  LIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKG 134

Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            R+     +L +  G       P +VG+  A
Sbjct: 135 TRLLDGHLRLGVAAGDHAVLLWPLLVGMAKA 165

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  157 bits (400), Expect = 2e-46
 Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 2/148 (1%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
            +  L +NRP+A NA N  L +    A+     D +V  VLL    +  F AG DL    
Sbjct: 15  RVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGR-GFSAGTDLAEMQ 73

Query: 107 TLNEDQIRSFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
               D   S      R +   L   P P++  ++G   G G  +    D+   +S  R+ 
Sbjct: 74  ARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLK 133

Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAA 193
              T L + P A  +  LP++VG   AA
Sbjct: 134 CPFTSLGVAPEAASSYLLPQLVGRQNAA 161

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  157 bits (400), Expect = 3e-46
 Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 5/145 (3%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
            +  L MNR    NA +  L+ E+   +++   D  VR ++L++  K  F AGADL    
Sbjct: 13  KVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGK-HFSAGADLTWMQ 71

Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
                 E++       L  +   +   P P +A++ G+A+GGG  +A ACDI +A+++ R
Sbjct: 72  SMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSAR 131

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVG 188
               E KL +IP A  +  + R +G
Sbjct: 132 FCFSEVKLGLIP-AVISPYVVRAIG 155

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  157 bits (399), Expect = 3e-46
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
             G++ + ++         +T  +E+      I  D E + V+L       FC   D   
Sbjct: 23  DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGP-SFCNEIDFTS 81

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
                       +   + +   L SI VPV+A ++G       E+ +  DI +AA +   
Sbjct: 82  FNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPV-TNAPEIPVMSDIVLAAESATF 140

Query: 165 G-LVETKLAIIPGAGGTQRLPRIVGIPLA 192
                    I+PG G     P ++G    
Sbjct: 141 QDGPHFPSGIVPGDGAHVVWPHVLGSNRG 169

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  157 bits (400), Expect = 3e-46
 Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 10/153 (6%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
              ++ + +NRP  RNA + T++EE+  A+     D ++R  +L           F AG 
Sbjct: 16  DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPL-----FTAGL 70

Query: 101 DLKHRLTLNEDQIRSFVS-TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
           DL       +          +         +  P+L  + G     G+E+ALA DI +A 
Sbjct: 71  DLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIAD 130

Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
                  +E    I P  G T R PR  G   A
Sbjct: 131 ETATFAQLEVNRGIYPFGGATIRFPRTAGWGNA 163

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score =  157 bits (399), Expect = 4e-46
 Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 1/148 (0%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           R  ++ + +NRP+ARNA+NA +   +  A+E  + D EVR V+L       FCAGADLK 
Sbjct: 16  RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKA 75

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
                            +       I  P +A ++G+A GGG E+ALA D+ VA    + 
Sbjct: 76  IARRENLYHPDH-PEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQF 134

Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           GL E K  +I  AGG  R+   +   +A
Sbjct: 135 GLPEVKRGLIAAAGGVFRIAEQLPRKVA 162

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  156 bits (398), Expect = 4e-46
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 2/149 (1%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           +  +  L +NRP   NA    +  E+  A++    D  VRCV++    +  FCAG DL  
Sbjct: 10  KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGR-AFCAGEDLSG 68

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
                 D      S    M   L  +  PV+A ++G+A G G+ +ALACD R+ +     
Sbjct: 69  VTE-EMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASF 127

Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
                 + ++P AG    LPR+VG   A 
Sbjct: 128 APAFIHVGLVPDAGHLYYLPRLVGRAKAL 156

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  156 bits (398), Expect = 5e-46
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
             G+ E+ +  P+ RNAL+   ++E+  A+     D+ V  V++     +     FCAG 
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDA-----FCAGF 64

Query: 101 DLKHRLTLN-----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
            L+            D  R        M  ++  +  PVLA ++G A GGGL ++LA D+
Sbjct: 65  YLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDM 124

Query: 156 RVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            + A + +       + I      +  L RIVG+  A
Sbjct: 125 AICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRA 161

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  155 bits (394), Expect = 2e-45
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
           +  GI+E+ M+   +          E   A   I  D + R V+L     D + A  D  
Sbjct: 30  DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTG-SGDAWMAEIDFP 88

Query: 104 HRLTL-NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
               + N  +        + +   L  I VPV++ ++G+A     E  L  DI +A+ N 
Sbjct: 89  SLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILTTDIILASENT 147

Query: 163 RM-GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
               +      I+PG G     P  +G+   
Sbjct: 148 VFQDMPHLNAGIVPGDGVHILWPLALGLYRG 178

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  155 bits (394), Expect = 2e-45
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 10/153 (6%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
           R G+  L ++ P  RN+    L  ++  A + +  D  VR ++L     +     FC+GA
Sbjct: 14  RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPA-----FCSGA 68

Query: 101 DLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
            +           R+   +   +      +  PV+A ++G A G G+ +AL  DIR+ A 
Sbjct: 69  QIS-AAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAE 127

Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
             R  + + +  + P A     LPR+VG  +AA
Sbjct: 128 EGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAA 160

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score =  154 bits (391), Expect = 2e-45
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 3/146 (2%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
            I  + M+  +  N L  T+ + +  A++A   D  V  +++    + VF  G DLK   
Sbjct: 14  AIGVIRMDDGKV-NVLGPTMQQALNEAIDAADRDN-VGALVIAGNHR-VFSGGFDLKVLT 70

Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
           +         +     ++ +L S P PV+    G A   G  +  + D RVAA    +  
Sbjct: 71  SGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQA 130

Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
            E  + +       + L   +     
Sbjct: 131 NEVAIGMTIPYAAMEVLKLRLTPSAY 156

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  154 bits (392), Expect = 3e-45
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 7/147 (4%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
            ++ + ++RP+  NA++  ++EE+   +     DE VR VLL    +  FC+G DL    
Sbjct: 15  AVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRA-FCSGGDLT--- 70

Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
                           +   + S+P PV+A + G+A G G  +ALACD+ VAA      L
Sbjct: 71  ---GGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQL 127

Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAA 193
             T++ ++P  G +  LP ++G    +
Sbjct: 128 AFTRVGLMPDGGASALLPLLIGRARTS 154

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score =  157 bits (398), Expect = 3e-45
 Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 19/182 (10%)

Query: 29  KEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL 88
                LT I YH   +    V +  NRP+ RNA     V+E+   ++  R   +V  VLL
Sbjct: 49  DGFDDLTDITYHRHVD-DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLL 107

Query: 89  ------RSLVKDVFCAGADLKHRLTLNE-----------DQIRSFVSTLRYMTCQLESIP 131
                        FC+G D + R                D  R+    +  +   +  +P
Sbjct: 108 TGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMP 167

Query: 132 VPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIP 190
             V+ +++G A GGG  + + CD+ +A+    R    +  +    G  G+  L R VG  
Sbjct: 168 KVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQK 227

Query: 191 LA 192
            A
Sbjct: 228 FA 229

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score =  153 bits (388), Expect = 1e-44
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 2/149 (1%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           R  +  + ++R   RNA ++ ++ ++  A+      EE RC +L +   + F AG DL  
Sbjct: 19  RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFA-HGEHFTAGLDLME 77

Query: 105 RLTLNEDQIRSFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
                      +    +            P++  + G+ +  G+E+ L  DI VAA   R
Sbjct: 78  LAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTR 137

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
              +E    I P  G T R PR  G   A
Sbjct: 138 FAHLEVLRGIPPLGGSTVRFPRAAGWTDA 166

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score =  153 bits (389), Expect = 1e-44
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 11/159 (6%)

Query: 37  IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL-----RSL 91
           I+Y+   +  GI ++ +NRP  RNA     V E+  A    R D  +  VLL      S 
Sbjct: 12  ILYY---KAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSD 68

Query: 92  VKDVFCAGADLKHR--LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEM 149
            K  FC+G D   R      +DQ    ++ L      + S+P  V+A++ G A GGG  +
Sbjct: 69  GKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQR-LIRSMPKVVIALVAGYAIGGGHVL 127

Query: 150 ALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
            L CD+ +AA N   G    K+    G  G+  L RIVG
Sbjct: 128 HLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVG 166

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score =  152 bits (387), Expect = 3e-44
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 17/159 (10%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
                 + +NRP A NAL+  ++ E+  A      D+ V  +++    R+     FC+GA
Sbjct: 18  DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRA-----FCSGA 72

Query: 101 DLKHRLTLNEDQI-------RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
           D+K      +                 +  T    ++  PVL  ++G   G G++     
Sbjct: 73  DVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTT 132

Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           DI +A+           + ++ G     R+ R++   +A
Sbjct: 133 DIVIASEQATFFDPHVSIGLVAG-RELVRVSRVLPRSIA 170

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score =  152 bits (387), Expect = 3e-44
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 12/155 (7%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
           R   + + MNRP  RNAL+  +++ ++ A + +  D ++RC +L           FCAG 
Sbjct: 27  RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGY-----FCAGM 81

Query: 101 DLKHRLTLNEDQI---RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
           DLK              S+  +      +   +  P++A ++G A  GG E+    DIRV
Sbjct: 82  DLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRV 141

Query: 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           AA + + G+ E K ++ P  G   RL R +   +A
Sbjct: 142 AAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVA 176

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  152 bits (387), Expect = 3e-44
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
             G+  + + RP   NAL      ++   +  +     VR ++L    +  FC+G D+  
Sbjct: 24  TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGR-GFCSGGDVDE 82

Query: 105 R----LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
                L+++  ++  F      +   +   P PV+A L G A G G  +ALA D RVA  
Sbjct: 83  IIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADP 142

Query: 161 NVRMGLVETKLAIIPG-AGGTQRLPRIVGIPLAA 193
           + R   + T++ +  G  G    LPR+VG+  A 
Sbjct: 143 STRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHAT 176

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  151 bits (383), Expect = 7e-44
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 10/162 (6%)

Query: 37  IIYHNSPERPGIVELC-MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDV 95
           I+     ++ G   +    +    N+LN  ++ E+ +A+     D+  + VLL + V  V
Sbjct: 7   IVVR---KQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSA-VGSV 61

Query: 96  FCAGADLKHRL----TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMAL 151
           FC G D  + +       + +       +R           P++  ++G A G G  +  
Sbjct: 62  FCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILP 121

Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
            CD+  A          T     P    T   P+I+G   A 
Sbjct: 122 LCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASAN 163

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  159 bits (404), Expect = 1e-43
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 5/149 (3%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
           G+  + +  P   N+L+  ++  + +  E      +V+ +++    K  F  G D+    
Sbjct: 17  GVAVITLINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFG 74

Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
                N  + ++   ++  +T  LE+   P +A +DG A GGGLE+A+AC  R++A   +
Sbjct: 75  EMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQ 134

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           +GL E +L +IPG GGTQRLPR+VG+  A
Sbjct: 135 LGLPELQLGVIPGFGGTQRLPRLVGLTKA 163

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  151 bits (384), Expect = 1e-43
 Identities = 38/161 (23%), Positives = 58/161 (36%), Gaps = 17/161 (10%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
             G+  +  NR    NA    L      A++    D  +R ++L    R      FCAGA
Sbjct: 37  PGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRG-----FCAGA 91

Query: 101 DLKHR--------LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALA 152
            L                                +  +  PV+A ++G   G GL  AL 
Sbjct: 92  YLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALM 151

Query: 153 CDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
           CD+R AA+  +   V  +  +I   G +  LPR+    +A 
Sbjct: 152 CDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVAL 192

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score =  150 bits (381), Expect = 2e-43
 Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 6/147 (4%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
            +  L +N P  RNAL+  LV ++   +     D  VR V+L       FCAGADL    
Sbjct: 20  PVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG-TFCAGADLSEAG 78

Query: 104 --HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
                +   D        +  +   +    +PV+A +DG    GG  +  ACDI VA   
Sbjct: 79  SGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPR 138

Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVG 188
               L E ++ + P       LP++  
Sbjct: 139 SSFALTEARIGVAPAIISLTLLPKLSA 165

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =  149 bits (380), Expect = 2e-43
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 6/148 (4%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           R  I+ + +NRP+A+N++NA +   +  A++ +  D  +   +L       FCAG DLK 
Sbjct: 22  RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTG-AGGSFCAGMDLKA 80

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
                   +       R +         P++A ++G A  GG E+ALA D+ VAA +   
Sbjct: 81  FARGENVVVEG-----RGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAF 135

Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           G+ E K  ++ G GG  RLP  +   +A
Sbjct: 136 GIPEVKRGLVAGGGGLLRLPERIPYAIA 163

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  158 bits (401), Expect = 3e-43
 Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 5/150 (3%)

Query: 47  GIVELCMNRPQAR-NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-- 103
           GIVEL  +      N  N   + E+  AV+AI+ D  V+ V++ S  KDVF  GAD+   
Sbjct: 16  GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEF 74

Query: 104 -HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
                L + ++ +       +    E + VP +A ++G A GGGLEM LA D RV A + 
Sbjct: 75  VENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSA 134

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           ++GL E KL I PG GGT RLPR++G+  A
Sbjct: 135 KIGLPEVKLGIYPGFGGTVRLPRLIGVDNA 164

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  149 bits (379), Expect = 3e-43
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--H 104
            +  +  +RP+A N +N TL+EE L  +        V  V+L  L + VFC GAD +  +
Sbjct: 16  SVCYITFHRPEANNTINDTLIEECLQVLNQCE-TSTVTVVVLEGLPE-VFCFGADFQEIY 73

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
           +      +  S    L  +  +L++ P   ++ + G    GGL    A DI +A      
Sbjct: 74  QEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASF 133

Query: 165 GLVETKLAIIPGAGGTQRLPRIVG 188
            L E    + P A     L R +G
Sbjct: 134 SLSELLFGLYP-ACVLPFLIRRIG 156

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score =  149 bits (379), Expect = 4e-43
 Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 11/173 (6%)

Query: 21  PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
           P++      E R    I Y        I  + +NRP+A NA N  L++E+  A      D
Sbjct: 6   PSWRRPSRPEQRTEMYIDYD---VSDRIATITLNRPEAANAQNPELLDELDAAWTRAAED 62

Query: 81  EEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY-----MTCQLESIPVPVL 135
            +V  ++LR+  K  F AG DL+    + +     F+           + +  ++P P +
Sbjct: 63  NDVSVIVLRANGK-HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSI 121

Query: 136 AVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           A + G    GGL +   CD+ +AA +         + I  G          +G
Sbjct: 122 AAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI--GGVEYHGHTWELG 172

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score =  147 bits (374), Expect = 1e-42
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 7/148 (4%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           R  ++ + +NRP ARNA+N  + + +  A + +    ++   ++       FCAG DLK 
Sbjct: 14  RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITG-AGGNFCAGMDLK- 71

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
                       V + R +         P++A ++G A  GG E+ L+CD+ VA  + + 
Sbjct: 72  -----AFVSGEAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKF 126

Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           G+ E K  ++ GAGG  RLP  +   +A
Sbjct: 127 GIPEVKRGLVAGAGGLLRLPNRIPYQVA 154

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  148 bits (376), Expect = 2e-42
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 7/152 (4%)

Query: 47  GIVELC-MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
           G  ++    R   +NALN  +++EI+ A+ +   D+  + VL  +    VFC G D  + 
Sbjct: 32  GFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLFSA-AGSVFCCGLDFGYF 89

Query: 106 LTL----NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
           +              V T++           P++  ++G A G G  +   CD+  A   
Sbjct: 90  VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 149

Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
                  T     P    +   P+++G   A 
Sbjct: 150 AWFQTPYTTFGQSPDGCSSITFPKMMGKASAN 181

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score =  147 bits (373), Expect = 3e-42
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 3/148 (2%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
              +  + +NRP ARNA++      +L A      D E    +L       FCAGADLK 
Sbjct: 18  AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNG-TFCAGADLKA 76

Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
             T   +++         M      +  PV+A + G A  GG+E+AL CD+RV   +  +
Sbjct: 77  MGTDRGNEL--HPHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVL 134

Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           G+   +  +    GGT RLPR++G   A
Sbjct: 135 GVFCRRWGVPLIDGGTIRLPRLIGHSRA 162

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score =  151 bits (383), Expect = 3e-42
 Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 25/172 (14%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLR-SLVKD-------VF 96
           R G+  L M R    NA +   V+++ TAV+    D  VR  LLR  ++         VF
Sbjct: 174 RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVF 233

Query: 97  CAGADLKHRLTLNEDQIRSFVSTLRYMTCQ----------------LESIPVPVLAVLDG 140
            AG +LK+        +   +        +                   I  P +A +DG
Sbjct: 234 SAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDG 293

Query: 141 SAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            A GGG ++ L  D  +A+S+    L   K  IIPG     RL R  G  ++
Sbjct: 294 FAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPG-AANLRLGRFAGPRVS 344

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  155 bits (393), Expect = 5e-42
 Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 8/146 (5%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
            +  + +  P   NA++ T++ E+   ++    D  V+ +++       FCAGAD+    
Sbjct: 30  SLAMIRLCNPPV-NAVSPTVIREVRNGLQKAGSDHTVKAIVICG-ANGNFCAGADIHGFS 87

Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
                        L  +  +++    PVLA + G A GGGLE+AL C  R+A +  R+GL
Sbjct: 88  AFTPGL------ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGL 141

Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
            E  L I+PGA GTQ LPR+VG+P+A
Sbjct: 142 PEVTLGILPGARGTQLLPRVVGVPVA 167

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score =  146 bits (371), Expect = 1e-41
 Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 15/164 (9%)

Query: 44  ERPGIVELCMNRPQA----RNALNATLVEEILTAVEAI----RGDEEVRCVLLRSLVKDV 95
            +  +  + M+   A    R   +  LV++I      +         +   ++ +   DV
Sbjct: 38  PQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDV 97

Query: 96  FCAGADLKHRLTLNEDQIRSFVSTLRYMTC-------QLESIPVPVLAVLDGSAYGGGLE 148
           F  G DL     L  +  R+ +                        +A++ G+A GGG E
Sbjct: 98  FNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFE 157

Query: 149 MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            AL+C   +A   V MGL E    + PG G    + + +   LA
Sbjct: 158 AALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLA 201

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  144 bits (365), Expect = 6e-41
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 6/151 (3%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI ++  NRP+ +NA+N  +  EI+ A++A   D+ +  VL  +   D + +G DL +  
Sbjct: 35  GITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGN--GDYYSSGNDLTNFT 92

Query: 107 TLN----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
            +     E++ ++    LR         P P++AV++G A G  + +    D   A+   
Sbjct: 93  DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 152

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
                 + L   P    +   P+I+    A 
Sbjct: 153 TFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT 183

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score =  141 bits (359), Expect = 1e-40
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 6/147 (4%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           G+  L +N  +  NA++  ++     A++    D     V++      +   G DLK   
Sbjct: 15  GVATLTLNNGKV-NAISPDVIIAFNAALDQAEKDR--AIVIVTGQPG-ILSGGYDLKVMT 70

Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMG 165
           +  E  I   V+    +  ++ S P P++    G A   G  + L+ D R+  +    +G
Sbjct: 71  SSAEAAIN-LVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIG 129

Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLA 192
           L E ++ +     G +     +     
Sbjct: 130 LNEVQIGMTMHHAGIELARDRLRKSAF 156

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  142 bits (361), Expect = 2e-40
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 13/159 (8%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
               + +  P   NAL       +   +E    + +V   +++S     F +GAD K   
Sbjct: 18  PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQS-SGRFFSSGADFKGIA 76

Query: 107 TLNEDQ-----------IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
               D            + +FV+   Y+T         ++  L+G A G    +   CDI
Sbjct: 77  KAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDI 136

Query: 156 RVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
             + +  V +      L +I   G T  LP   G     
Sbjct: 137 VYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTY 175

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  143 bits (362), Expect = 2e-40
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
           +  G+V L +NRPQA NAL+  ++  +  A   +  DE VR V+L +  K  FCAG DLK
Sbjct: 32  DERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGK-AFCAGHDLK 90

Query: 104 -HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
             R   + +      +    +   ++ +P PV+A + G A   G ++   CD+ VA  + 
Sbjct: 91  EMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDA 150

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVG 188
           R  +    + +     G   L R VG
Sbjct: 151 RFAVSGINVGLFCSTPGVA-LSRNVG 175

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  139 bits (353), Expect = 2e-39
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 9/151 (5%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
              G++ L + R    + L+  ++  +  A+    GD+ V  +++    + +FCAG DLK
Sbjct: 13  LSEGVLTLTLGRAP-AHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGR-IFCAGHDLK 70

Query: 104 --HRLTLNEDQIRSFVSTLR----YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
              R   + D+ R+FV+ L      +   L   P P +A+++G A   GL++  ACD+  
Sbjct: 71  EIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAY 130

Query: 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           A+   R  L   +            + R++G
Sbjct: 131 ASPAARFCLPGVQNGGFCTTPAV-AVSRVIG 160

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  138 bits (349), Expect = 1e-38
 Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 5/183 (2%)

Query: 12  PARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEIL 71
            +        N        GR+ ++    ++ +  GI  + ++ P+ RN L+  +++ + 
Sbjct: 7   HSSGVDLGTENLYFQSMGAGRRESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQ 66

Query: 72  TAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTLNEDQIRSFVSTLRYMTCQLES 129
           + +       +++ +++ +    VF +G DLK        +     F +  + M   + +
Sbjct: 67  SDILHDADSNDLKVIIISAEGP-VFSSGHDLKELTEEQGRDYHAEVFQTCSKVMM-HIRN 124

Query: 130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189
            PVPV+A+++G A   G ++  +CDI VA+           + +     G   L R V  
Sbjct: 125 HPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPR 183

Query: 190 PLA 192
            +A
Sbjct: 184 KVA 186

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score =  142 bits (359), Expect = 4e-38
 Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 14/180 (7%)

Query: 22  NYST-SVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
            Y    +S  G   T  I     +      +        N+ +  +  E+  A++ IR +
Sbjct: 19  QYKHWKLSFNGPVATLGI-----DIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFE 73

Query: 81  E-EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE----SIPVPVL 135
             EVR V+L SL   VFC+GA++            +F          LE       +  L
Sbjct: 74  HPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFL 133

Query: 136 AVLDGSAYGGGLEMALACDIRVAA--SNVRMGLVETK-LAIIPGAGGTQRLPRIVGIPLA 192
           A ++G+  GGG E+ALACD        +  + L E   L ++PG GG  R+     +   
Sbjct: 134 AAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHD 193

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 13/178 (7%)

Query: 26  SVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDE-EVR 84
           ++ +  R  T        E P  ++  +      N        E   A+ ++R +E  V 
Sbjct: 271 TIDRAKRIATFTAKAPQTEPPASIDAIVA--AGANWWPLKFAREFDDAILSMRTNELAVG 328

Query: 85  CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD-GSAY 143
             + R+         AD       +   +R  +  LR    +++     + A+++ GS +
Sbjct: 329 TWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCF 388

Query: 144 GGGL-EMALACDIRV-------AASNVRMGLVETKLAIIPGAGGTQRLP-RIVGIPLA 192
            G   E+A A D                + L E    + P      RL  R       
Sbjct: 389 AGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEP 446

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  129 bits (327), Expect = 4e-35
 Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 34/178 (19%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
              +  +  NRP+  NA+ A    E+   VE    D +V  +L+    +  FCAG DL  
Sbjct: 42  TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEG-FCAGFDLSA 100

Query: 105 R------------------------------LTLNEDQIRSFVSTLRYMTCQLESIPVPV 134
                                             +       +S        L     P 
Sbjct: 101 YAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPT 160

Query: 135 LAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           +  + G    GG ++AL  D  +AA++ ++G    ++  +P AG        +G   A
Sbjct: 161 VVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRA 215

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 93.3 bits (232), Expect = 3e-21
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 9/162 (5%)

Query: 34  LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
           + Q +   S +  G+V L  N  +A NAL+  +V  +   +   + D  + CV+L    +
Sbjct: 40  VFQTLATASGKLVGVVTL--NVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGE 97

Query: 94  DVFCAGADLK--HRLTLNEDQ-----IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGG 146
             FCAG D++  +  ++          + F      +   L +   PVL   DG   GGG
Sbjct: 98  KAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGG 157

Query: 147 LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
           L +      +V     R+ + E  + + P  GG+  L R+ G
Sbjct: 158 LGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG 199

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 92.4 bits (230), Expect = 3e-21
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 8/152 (5%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
           G++ L  NRP+  NAL   ++ +I   ++    D E   ++++      FCAG D++   
Sbjct: 17  GVITL--NRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVIS 74

Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
                 +     F      +   + S   P +A++ G   GGG+ +++    RVA     
Sbjct: 75  EAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCL 134

Query: 164 MGLVETKLAIIPGAGGT---QRLPRIVGIPLA 192
             + ET + + P  GG     RL   +G  LA
Sbjct: 135 FAMPETAIGLFPDVGGGYFLPRLQGKLGYFLA 166

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 6e-07
 Identities = 62/341 (18%), Positives = 110/341 (32%), Gaps = 110/341 (32%)

Query: 20  WPNYSTSVSKEG--RKLTQIIYHNSPERPGIVELCMNRPQ----ARNALNATLVEE---- 69
           W N     S E     L +++Y   P      +   N        +  L   L  +    
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 70  ---ILTAVEAIRGDEEV------RC-VLLRSLVKDV--FCAGADLKH------RLTLNED 111
              +L  V+    + +        C +LL +  K V  F + A   H       +TL  D
Sbjct: 246 CLLVLLNVQ----NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS---------NV 162
           +++S +   +Y+ C+ + +P  VL                   I +A S         N 
Sbjct: 302 EVKSLLL--KYLDCRPQDLPREVLTT-----------NPRRLSI-IAESIRDGLATWDNW 347

Query: 163 RMGLVETKLAII--------PGAGGTQR--------LPRIVGIP---LAALYEDLLNNDC 203
           +    +    II        P      R         P    IP   L+ ++ D++ +D 
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPA---EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 204 MSSLDTRYMWCTPYRRGLV-------------VTLVIKFSQP----VHISALIVWNYNAS 246
           M  ++        ++  LV             + L +K        +H    IV +YN  
Sbjct: 405 MVVVNK----L--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYN-- 454

Query: 247 IEMSYCGFSLLNTWGDRY---YLG--LNGIELYDEFGDLIP 282
           I  ++    L+  + D+Y   ++G  L  IE  +    L  
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLFR 494

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.81
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.73
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.73
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.4
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.37
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.27
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.23
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.64
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.09
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.04
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	97.96
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	97.83
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	97.82
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	97.63
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.42
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.26
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.1
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.0
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	96.92
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	96.91
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.81
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.55
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.2
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.11
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	95.8
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	95.57
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	94.16
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	92.76
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	91.87
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	91.75
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	91.7
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	91.46
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	91.1
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	90.69
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	88.76
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	87.01
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	83.96
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	82.77

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=3.2e-46  Score=348.02  Aligned_cols=210  Identities=24%  Similarity=0.319  Sum_probs=180.0

Q ss_pred             eeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHH
Q psy504           41 NSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL  120 (358)
Q Consensus        41 l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~  120 (358)
                      +++++|+|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++..... ....+.+.+
T Consensus         3 l~E~~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~-~~~~~~~~~   80 (254)
T 3hrx_A            3 LKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGA-GRAFSAGQDLTEFGDRKP-DYEAHLRRY   80 (254)
T ss_dssp             EEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGTTTSCC-CHHHHTHHH
T ss_pred             EEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCC-CCCcccCccHHHhcccch-hhHHHHHHH
Confidence            556789999999999999999999999999999999999999999999999 899999999999865433 234556777


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN  200 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt  200 (358)
                      +.++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.++|++|+  ||
T Consensus        81 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll--lt  158 (254)
T 3hrx_A           81 NRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL--LL  158 (254)
T ss_dssp             HHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHH--HH
T ss_pred             HHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHh--hc
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             ccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccc-cccceecccccccCc
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNAS-IEMSYCGFSLLNTWG  261 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~-~e~~~~gk~L~~~~g  261 (358)
                      |++++|       ++|+++|||+++++..+.......+.......+ ......++.+...+.
T Consensus       159 g~~i~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~  213 (254)
T 3hrx_A          159 SPRLSA-------EEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYALTKKLLLETYR  213 (254)
T ss_dssp             CCCEEH-------HHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGG
T ss_pred             CcccCH-------HHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc
Confidence            999999       999999999999987665554444433333333 333333333333333

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=2.2e-45  Score=345.93  Aligned_cols=189  Identities=28%  Similarity=0.429  Sum_probs=166.5

Q ss_pred             eeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH----HHHHHH
Q psy504           41 NSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE----DQIRSF  116 (358)
Q Consensus        41 l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~----~~~~~~  116 (358)
                      +++.++||++||||||+++|+||.+|+.+|.+++++++.|++||+|||||. |++||+|.|++++.....    +....+
T Consensus        18 l~~~~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~   96 (274)
T 4fzw_C           18 LSHVEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGA-GRGFCAGQDLNDRNVDPTGPAPDLGMSV   96 (274)
T ss_dssp             EEEEETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCCC---------CCCHHHHH
T ss_pred             EEEEECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceeCCcChHhhhccccccchHHHHHH
Confidence            455689999999999999999999999999999999999999999999999 799999999998754322    223445


Q ss_pred             HHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhh
Q psy504          117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE  196 (358)
Q Consensus       117 ~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll  196 (358)
                      .+.++.++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+
T Consensus        97 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~ll  176 (274)
T 4fzw_C           97 ERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLA  176 (274)
T ss_dssp             HHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHHHHHH
Confidence            55677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504          197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI  239 (358)
Q Consensus       197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~  239 (358)
                        |||++++|       ++|+++|||++|++..+.......+.
T Consensus       177 --ltg~~i~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a  210 (274)
T 4fzw_C          177 --LLGNQLSA-------EQAHEWGMIWQVVDDETLADTAQQLA  210 (274)
T ss_dssp             --HHCCCEEH-------HHHHHTTSSSEEECGGGHHHHHHHHH
T ss_pred             --HhCCcCCH-------HHHHHCCCceEEeChHHHHHHHHHHH
Confidence              99999999       99999999999998766554444443

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=5e-45  Score=340.76  Aligned_cols=207  Identities=30%  Similarity=0.432  Sum_probs=176.2

Q ss_pred             eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHH
Q psy504           42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR  121 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~  121 (358)
                      ++++|+|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++......  ..+.....
T Consensus         9 ve~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~--~~~~~~~~   85 (258)
T 4fzw_A            9 VSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGN-ARFFAAGADLNEMAEKDLA--ATLNDTRP   85 (258)
T ss_dssp             EEEETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECC-SSEEEECBCHHHHHTCCHH--HHHTCSHH
T ss_pred             EEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCC-CCceeCCCchhhhccchhh--hHHHhHHH
Confidence            45589999999999999999999999999999999999999999999999 8999999999988654432  23334556


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  |||
T Consensus        86 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ll--ltg  163 (258)
T 4fzw_A           86 QLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMV--LSG  163 (258)
T ss_dssp             HHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHH--HHC
T ss_pred             HHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHH--HcC
Confidence            788899999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhh-hccccccceecccccccC
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWN-YNASIEMSYCGFSLLNTW  260 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n-~~~~~e~~~~gk~L~~~~  260 (358)
                      ++++|       ++|+++|||++|++..+.......+.... .+++......++.+...+
T Consensus       164 ~~i~a-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~  216 (258)
T 4fzw_A          164 ESITA-------QQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQAAKQALRQSQ  216 (258)
T ss_dssp             CCEEH-------HHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred             CcCcH-------HHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence            99999       99999999999998866555444443333 333333333343333333

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=2.9e-44  Score=336.78  Aligned_cols=208  Identities=37%  Similarity=0.566  Sum_probs=180.3

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      .+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++..........+....+.+
T Consensus        15 ~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   94 (265)
T 3kqf_A           15 ATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTT   94 (265)
T ss_dssp             CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999944999999999999877666666777888899


Q ss_pred             HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504          124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC  203 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~  203 (358)
                      +.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||++
T Consensus        95 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~--ltg~~  172 (265)
T 3kqf_A           95 MEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELI--YTGRR  172 (265)
T ss_dssp             HHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHH--HHCCC
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHHHHHHH--HcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             cccccccccchhhHhcCCceEEEecCCccHHHHHHHH-hhhccccccceecccccccC
Q psy504          204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIV-WNYNASIEMSYCGFSLLNTW  260 (358)
Q Consensus       204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~-~n~~~~~e~~~~gk~L~~~~  260 (358)
                      ++|       ++|+++|||+++++..+.......+.. ...+++......++.+...+
T Consensus       173 ~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~  223 (265)
T 3kqf_A          173 ISA-------QEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAVRLAKEAISNGI  223 (265)
T ss_dssp             EEH-------HHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred             CCH-------HHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            999       999999999999986554433333332 22333333443444443333

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=1.7e-43  Score=330.85  Aligned_cols=184  Identities=28%  Similarity=0.471  Sum_probs=167.0

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLRY  122 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~~  122 (358)
                      .+++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..... .....+....+.
T Consensus        12 ~~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   89 (261)
T 3pea_A           12 VEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGE-GRFFSAGADIKEFTSVTEAKQATELAQLGQV   89 (261)
T ss_dssp             EETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSSTTCCHHHHHHHHHHHHH
T ss_pred             EECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceeCCcCHHHHhhcCchhHHHHHHHHHHH
Confidence            479999999999999 99999999999999999999999999999999 699999999999876544 333445555677


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  |||+
T Consensus        90 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~--ltg~  167 (261)
T 3pea_A           90 TFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMM--LTST  167 (261)
T ss_dssp             HHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHH--HHCC
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHH--HcCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      +++|       ++|+++|||+++++..+.......+
T Consensus       168 ~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~  196 (261)
T 3pea_A          168 PITG-------AEALKWGLVNGVFAEETFLDDTLKV  196 (261)
T ss_dssp             CEEH-------HHHHHHTSSSEEECGGGHHHHHHHH
T ss_pred             CCCH-------HHHHHCCCccEecCHHHHHHHHHHH
Confidence            9999       9999999999999875544443333

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=1.6e-43  Score=333.63  Aligned_cols=208  Identities=25%  Similarity=0.367  Sum_probs=180.0

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++|+||||++ |+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..........+...++.
T Consensus        29 ~~~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  106 (277)
T 4di1_A           29 VADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGG-HEIFSAGDDMPELRTLNAPEADTAARVRLE  106 (277)
T ss_dssp             EEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECC-SSCSBCCBCHHHHHTCCHHHHHHHHHHHHH
T ss_pred             EEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCCEecCcCcccccccChHHHHHHHHHHHH
Confidence            3479999999999999 99999999999999999999999999999999 899999999999987766666677778888


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  |||+
T Consensus       107 ~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll--ltG~  184 (277)
T 4di1_A          107 AIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELV--FSGR  184 (277)
T ss_dssp             HHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHH--HHCC
T ss_pred             HHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHH--HcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhh-ccccccceecccccccCc
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNY-NASIEMSYCGFSLLNTWG  261 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~-~~~~e~~~~gk~L~~~~g  261 (358)
                      +++|       ++|+++|||++|++..+.......+..... .++......++.+...+.
T Consensus       185 ~i~A-------~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~  237 (277)
T 4di1_A          185 FFDA-------EEALALGLIDDMVAPDDVYDSAVAWARRYLECPPRALAAAKAVINDVFE  237 (277)
T ss_dssp             CEEH-------HHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSCHHHHHHHHHHHHHTTT
T ss_pred             CCCH-------HHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            9999       999999999999987554444444433322 333333334444444433

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=1.3e-43  Score=332.15  Aligned_cols=175  Identities=25%  Similarity=0.428  Sum_probs=164.3

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCce-ecCCCchhccc----cCHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF-CAGADLKHRLT----LNEDQIRSFV  117 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~F-saG~Dl~~~~~----~~~~~~~~~~  117 (358)
                      +.+++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||. |+.| |+|.|++++..    ........+.
T Consensus         9 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FF~aG~Dl~~~~~~~~~~~~~~~~~~~   87 (263)
T 3lke_A            9 EIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSK-HRAYFSSGPRLEDLLICASDQSDVRLREVL   87 (263)
T ss_dssp             EECSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEES-CTTEEECBSCHHHHHHHHHCSSSHHHHHHH
T ss_pred             EEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcC-CCceEecCcCHHHHHhhcccCCHHHHHHHH
Confidence            4589999999999999999999999999999999999999999999999 6777 99999999865    3344455677


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      ..++.++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ 
T Consensus        88 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l~-  166 (263)
T 3lke_A           88 HVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLL-  166 (263)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHH-
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHHHHHH-
Confidence            7788899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEe
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVI  227 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~  227 (358)
                       ++|++++|       ++|+++|||+++++
T Consensus       167 -ltg~~~~a-------~eA~~~GLv~~vv~  188 (263)
T 3lke_A          167 -LEGKLFTS-------EEALRLGLIQEICE  188 (263)
T ss_dssp             -HHCCCEEH-------HHHHHHTSSSEEES
T ss_pred             -HhCCCcCH-------HHHHHcCCCcEecC
Confidence             99999999       99999999999997

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=3e-43  Score=330.38  Aligned_cols=185  Identities=25%  Similarity=0.385  Sum_probs=166.2

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVST  119 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~  119 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++...   ...........
T Consensus         9 ~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (268)
T 3i47_A            9 EIQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKAN-GKHFSAGADLTWMQSMANFTEEENLEDSLV   87 (268)
T ss_dssp             EEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEEC-SSCSBCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             EEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC-CCCeeCCCChhhhhccccccHHHHHHHHHH
Confidence            3479999999999999999999999999999999999999999999999 7999999999987542   22333345566


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      +..++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..+|++|+  |
T Consensus        88 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A~~ll--l  164 (268)
T 3i47_A           88 LGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERAAKMLF--M  164 (268)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHHHHHH--H
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHHHHHHH--H
Confidence            7788999999999999999999999999999999999999999999999999999999887 899999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      ||++++|       ++|+++|||++|++..+.......+
T Consensus       165 tg~~i~A-------~eA~~~GLV~~vv~~~~l~~~a~~~  196 (268)
T 3i47_A          165 SAEVFDA-------TRAYSLNLVQHCVPDDTLLEFTLKY  196 (268)
T ss_dssp             HCCEEEH-------HHHHHTTSCSEEECGGGHHHHHHHH
T ss_pred             cCCccCH-------HHHHHcCCCcEeeChhHHHHHHHHH
Confidence            9999999       9999999999999875544444444

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=2.8e-43  Score=331.71  Aligned_cols=185  Identities=29%  Similarity=0.407  Sum_probs=169.1

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.+  |+++|+|||||. |++||+|.|++++..........+...++.
T Consensus        21 ~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   97 (275)
T 3hin_A           21 DTVGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGI-GDHFSAGLDLSELRERDATEGLVHSQTWHR   97 (275)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEES-SSCSBCCBCGGGCCCCCHHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECC-CCCccCCCCHHHHhccChhhHHHHHHHHHH
Confidence            34799999999999999999999999999999998  689999999999 789999999999887665555566677888


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+  |||+
T Consensus        98 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~--ltG~  175 (275)
T 3hin_A           98 VFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMM--LTGR  175 (275)
T ss_dssp             HHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHH--HHCC
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHH--HcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI  239 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~  239 (358)
                      +++|       ++|+++|||++|++..+.......+.
T Consensus       176 ~i~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a  205 (275)
T 3hin_A          176 VYSA-------AEGVVHGFSQYLIENGSAYDKALELG  205 (275)
T ss_dssp             CEEH-------HHHHHHTSCSEEESSSCHHHHHHHHH
T ss_pred             CCCH-------HHHHHCCCCCEEeChhHHHHHHHHHH
Confidence            9999       99999999999998766544444443

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=3.1e-43  Score=332.20  Aligned_cols=185  Identities=24%  Similarity=0.374  Sum_probs=167.2

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC----HHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVST  119 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~----~~~~~~~~~~  119 (358)
                      .+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++....    ......+...
T Consensus        23 ~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~  101 (279)
T 3g64_A           23 ITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGE-GRGFCSGGDVDEIIGATLSMDTARLLDFNRM  101 (279)
T ss_dssp             EETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEEC-SSCSBCCBCTTTTHHHHTTCCHHHHHHHHHH
T ss_pred             EECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceecCcCHHHHhhccccchhhHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999 69999999999875432    1223355566


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccc-cCcccccccccccchhhHHhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAII-PGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~-p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      ++.++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|++++|..+|++++  
T Consensus       102 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~~A~~l~--  179 (279)
T 3g64_A          102 TGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLL--  179 (279)
T ss_dssp             HHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHH--
T ss_pred             HHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHHHHHHHH--
Confidence            7889999999999999999999999999999999999999999999999999999 9999999999999999999999  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      |||+.++|       ++|+++|||++|++..+.......+
T Consensus       180 ltg~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~  212 (279)
T 3g64_A          180 MLGDTVRA-------PEAERIGLISELTEEGRADEAARTL  212 (279)
T ss_dssp             HHCCCEEH-------HHHHHHTCCSEECCTTCHHHHHHHH
T ss_pred             HcCCCcCH-------HHHHHCCCCCEecCchHHHHHHHHH
Confidence            99999999       9999999999999876544444443

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=7.5e-43  Score=339.47  Aligned_cols=187  Identities=25%  Similarity=0.374  Sum_probs=169.5

Q ss_pred             eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHH
Q psy504           42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVS  118 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~  118 (358)
                      ++.+|+|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++...   .......+..
T Consensus        13 ~e~~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~   92 (353)
T 4hdt_A           13 VNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWF   92 (353)
T ss_dssp             EEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHHHHH
T ss_pred             EEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHHHHH
Confidence            3458999999999999999999999999999999999999999999999966899999999987542   2334566777


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      ..++++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+|++|+  
T Consensus        93 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~a~~l~--  169 (353)
T 4hdt_A           93 DEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-KLGLHAA--  169 (353)
T ss_dssp             HHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-THHHHHH--
T ss_pred             HHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-HHHHHHH--
Confidence            8888999999999999999999999999999999999999999999999999999999999999999998 6999999  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      |||++++|       ++|+++|||+++++..+.......+
T Consensus       170 ltG~~i~A-------~eA~~~GLv~~vv~~~~l~~~a~~l  202 (353)
T 4hdt_A          170 LTGAPFSG-------ADAIVMGFADHYVPHDKIDEFTRAV  202 (353)
T ss_dssp             HHCCCBCH-------HHHHHHTSCSEECCGGGHHHHHHHH
T ss_pred             hcCCCCCH-------HHHHHcCCCcEEeCHHHHHHHHHHH
Confidence            99999999       9999999999999876654444333

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=3.5e-43  Score=330.70  Aligned_cols=187  Identities=44%  Similarity=0.733  Sum_probs=171.6

Q ss_pred             eeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHH
Q psy504           35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIR  114 (358)
Q Consensus        35 ~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~  114 (358)
                      ++.+.++.+.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.........
T Consensus         9 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~   88 (272)
T 1hzd_A            9 ELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVG   88 (272)
T ss_dssp             SEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHH
T ss_pred             cEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHH
Confidence            45566666678999999999999999999999999999999999999999999999855899999999998765544445


Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHh
Q psy504          115 SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAAL  194 (358)
Q Consensus       115 ~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~  194 (358)
                      .+...+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        89 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  168 (272)
T 1hzd_A           89 PFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKE  168 (272)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHH
Confidence            55566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          195 YEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       195 ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      ++  |||++++|       ++|+++|||+++++..+
T Consensus       169 l~--ltg~~~~a-------~eA~~~GLv~~vv~~~~  195 (272)
T 1hzd_A          169 LI--FSARVLDG-------KEAKAVGLISHVLEQNQ  195 (272)
T ss_dssp             HH--HHTCEEEH-------HHHHHHTSCSEEECCCT
T ss_pred             HH--HcCCcCCH-------HHHHHCCCcceecChhh
Confidence            99  99999999       99999999999998654

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=4.5e-43  Score=330.49  Aligned_cols=174  Identities=21%  Similarity=0.306  Sum_probs=162.7

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc--CHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSFVSTL  120 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~--~~~~~~~~~~~~  120 (358)
                      +.+++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++...  .......+...+
T Consensus        33 ~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~  111 (276)
T 3rrv_A           33 RADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGA-GRAFSAGGDFGYLKELSADADLRAKTIRDG  111 (276)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             EEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCcccCCcCHHHHhhcccchHHHHHHHHHH
Confidence            4579999999999999999999999999999999999999999999999 7999999999987653  223344566677


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN  200 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt  200 (358)
                      +.++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +|
T Consensus       112 ~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ell--lt  189 (276)
T 3rrv_A          112 REIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYA--LT  189 (276)
T ss_dssp             HHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHHHH--HH
T ss_pred             HHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHHHH--Hc
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             ccccccccccccchhhHhcCCceEEE
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLV  226 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv  226 (358)
                      |++++|       ++|+++|||++++
T Consensus       190 G~~i~A-------~eA~~~GLv~~vv  208 (276)
T 3rrv_A          190 GTRISA-------QRAVELGLANHVA  208 (276)
T ss_dssp             CCCEEH-------HHHHHHTSCSEEE
T ss_pred             CCCCCH-------HHHHHcCCHHHHH
Confidence            999999       9999999999999

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1.3e-43  Score=330.89  Aligned_cols=186  Identities=24%  Similarity=0.291  Sum_probs=161.7

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH-HHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ-IRSFVSTLR  121 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~-~~~~~~~~~  121 (358)
                      +.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++....... ...+...++
T Consensus        11 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   89 (256)
T 3qmj_A           11 DDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGS-GRGFSAGTDLAEMQARITDPNFSEGKFGFR   89 (256)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBCHHHHHHHHHSSSCCCCSSHHH
T ss_pred             EEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCHHHHhhcccchhHHHHHHHHH
Confidence            4479999999999999999999999999999999999999999999999 79999999999875421111 011234457


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||
T Consensus        90 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~--ltg  167 (256)
T 3qmj_A           90 GLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLL--MSS  167 (256)
T ss_dssp             HHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHHHH--HSC
T ss_pred             HHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHH--HcC
Confidence            788999999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      ++++|       ++|+++|||+++++..+.......+
T Consensus       168 ~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~  197 (256)
T 3qmj_A          168 EWIDA-------EEALRMGLVWRICSPEELLPEARRH  197 (256)
T ss_dssp             CCEEH-------HHHHHHTSSSEEECGGGHHHHHHHH
T ss_pred             CCCCH-------HHHHHCCCccEEeCHhHHHHHHHHH
Confidence            99999       9999999999999875544443333

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=3.7e-43  Score=329.98  Aligned_cols=178  Identities=26%  Similarity=0.359  Sum_probs=163.3

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC----HHHH-HHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQI-RSFV  117 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~----~~~~-~~~~  117 (358)
                      +.+++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||. |++||+|+|++++....    .... ..+.
T Consensus         8 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   86 (269)
T 1nzy_A            8 RVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAGVRDHFRIAA   86 (269)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSCSSSHHHHHHHHHHHHH
T ss_pred             EEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECC-CCCcccCcCHHHHhhcccccChHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999999 79999999999986642    2121 3444


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      ..+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+ 
T Consensus        87 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~-  165 (269)
T 1nzy_A           87 LWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELM-  165 (269)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHHHHH-
Confidence            5677888999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                       +||++++|       ++|+++|||+++++..+
T Consensus       166 -ltg~~~~a-------~eA~~~GLv~~vv~~~~  190 (269)
T 1nzy_A          166 -LTNRTLYP-------EEAKDWGLVSRVYPKDE  190 (269)
T ss_dssp             -HHCCCBCH-------HHHHHHTSCSCEECHHH
T ss_pred             -HcCCCCCH-------HHHHHCCCccEeeCHHH
Confidence             99999999       99999999999997644

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=5.2e-43  Score=325.61  Aligned_cols=177  Identities=20%  Similarity=0.263  Sum_probs=162.3

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEee-cCCCceecCCCchhccccCHHHH-HHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS-LVKDVFCAGADLKHRLTLNEDQI-RSFVSTL  120 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg-~gg~~FsaG~Dl~~~~~~~~~~~-~~~~~~~  120 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+||||| . |++||+|+|++++......+. ..+...+
T Consensus         5 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   83 (250)
T 2a7k_A            5 ENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGA-ERSFSAGGDFNEVKQLSRSEDIEEWIDRV   83 (250)
T ss_dssp             EEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCT-TSCSBCBSCHHHHHTC-CHHHHHHHHHHH
T ss_pred             EeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCCccCCcCHHHHhhcCchhhHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999 7 799999999998865432222 3455567


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN  200 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt  200 (358)
                      ++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..+|++++  +|
T Consensus        84 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~--lt  160 (250)
T 2a7k_A           84 IDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEII--YQ  160 (250)
T ss_dssp             HHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHH--HH
T ss_pred             HHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHH--Hc
Confidence            788999999999999999999999999999999999999999999999999999999999 999999999999999  99


Q ss_pred             ccccccccccccchhhHhcCCceEEEecCC
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      |++++|       ++|+++|||+++++..+
T Consensus       161 g~~~~a-------~eA~~~GLv~~vv~~~~  183 (250)
T 2a7k_A          161 CQSLDA-------PRCVDYRLVNQVVESSA  183 (250)
T ss_dssp             CCCBCH-------HHHHHHTCCSEEECHHH
T ss_pred             CCcccH-------HHHHHcCCcceecCHHH
Confidence            999999       99999999999997643

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=2.4e-43  Score=334.00  Aligned_cols=205  Identities=23%  Similarity=0.293  Sum_probs=170.3

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH-----HHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ-----IRSFVS  118 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~-----~~~~~~  118 (358)
                      .+++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++.......     ...+..
T Consensus        15 ~~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~   93 (287)
T 3gkb_A           15 SEHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVN   93 (287)
T ss_dssp             EETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCC
T ss_pred             EECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHH
Confidence            47899999999998 799999999999999999999999999999999568999999999886432110     011223


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcC-CeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase-~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      .++.++.++.++|||+||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|++++|..+|++|+ 
T Consensus        94 ~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ell-  172 (287)
T 3gkb_A           94 VFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVV-  172 (287)
T ss_dssp             TTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHH-
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCHHHHHHHH-
Confidence            456788999999999999999999999999999999999999 999999999999999999999999999999999999 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHh-hhccccccceecccccc
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVW-NYNASIEMSYCGFSLLN  258 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~-n~~~~~e~~~~gk~L~~  258 (358)
                       |||++++|       ++|+++|||++|++..+.......+... ..+++......++.+..
T Consensus       173 -ltG~~i~A-------~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~~~K~~l~~  226 (287)
T 3gkb_A          173 -LTADLFDA-------ETAASYGWINRALPADELDEYVDRVARNIAALPDGVIEAAKRSLPA  226 (287)
T ss_dssp             -HHCCCEEH-------HHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSCC
T ss_pred             -HcCCCCCH-------HHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence             99999999       9999999999999865443333333322 23333333333433333

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=5.3e-44  Score=333.80  Aligned_cols=206  Identities=22%  Similarity=0.258  Sum_probs=170.1

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      .+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |+.||+|.|++++..........+...++++
T Consensus        18 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   96 (258)
T 3lao_A           18 QRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAH-GEHFTAGLDLMELAPKLAASGFRYPDGGVDP   96 (258)
T ss_dssp             EETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCHHHHGGGCBTTBCCCCTTCCCT
T ss_pred             EECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC-CCCeecCcCHHHHhhccchhhHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999 6789999999988654322111122223345


Q ss_pred             HHHH-HcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          124 TCQL-ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       124 ~~~i-~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      +.++ .++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||+
T Consensus        97 ~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~--ltg~  174 (258)
T 3lao_A           97 WGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYI--LTGD  174 (258)
T ss_dssp             TSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHHHHHH--TTCC
T ss_pred             HHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHH--HcCC
Confidence            6677 899999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHHHH-hhhccccccceeccccccc
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIV-WNYNASIEMSYCGFSLLNT  259 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~-~n~~~~~e~~~~gk~L~~~  259 (358)
                      +++|       ++|+++|||+++++..+......++.. ...+++......++.+...
T Consensus       175 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~  225 (258)
T 3lao_A          175 EFDA-------DEALRMRLLTEVVEPGEELARALEYAERIARAAPLAVRAALQSAFQG  225 (258)
T ss_dssp             CEEH-------HHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CCCH-------HHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            9999       999999999999987654444333332 2233333344344433333

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=6.1e-43  Score=327.48  Aligned_cols=182  Identities=34%  Similarity=0.461  Sum_probs=164.6

Q ss_pred             cCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           45 RPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        45 ~~~-V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      +++ |++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++......+  .+...++.+
T Consensus        16 ~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~   92 (263)
T 3moy_A           16 PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGS-ERAFAAGADIAEMVTLTPHQ--ARERNLLSG   92 (263)
T ss_dssp             CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECC-SSEEEESBCHHHHTTCCHHH--HHHTTTTHH
T ss_pred             eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCeeCCcChHHHhccCchh--HHHHHHHHH
Confidence            555 99999999999999999999999999999999999999999997 89999999999987665443  224445677


Q ss_pred             HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504          124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC  203 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~  203 (358)
                      +.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||++
T Consensus        93 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~--ltg~~  170 (263)
T 3moy_A           93 WDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLC--LTGRS  170 (263)
T ss_dssp             HHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHH--HHCCE
T ss_pred             HHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHHHHHH--HcCCC
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             cccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      ++|       ++|+++|||+++++..+.......+
T Consensus       171 ~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~  198 (263)
T 3moy_A          171 LTA-------EEAERVGLVSRIVPAADLLDEALAV  198 (263)
T ss_dssp             EEH-------HHHHHTTSCSEEECGGGHHHHHHHH
T ss_pred             CCH-------HHHHHCCCccEecCchHHHHHHHHH
Confidence            999       9999999999999875544333333

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=6.2e-43  Score=331.79  Aligned_cols=208  Identities=25%  Similarity=0.302  Sum_probs=171.3

Q ss_pred             eeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHH-------HH
Q psy504           41 NSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED-------QI  113 (358)
Q Consensus        41 l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~-------~~  113 (358)
                      +++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++......       ..
T Consensus        27 ~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~  105 (290)
T 3sll_A           27 VDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGA-GKGFCSGADQKSAGPIPHIGGLTQPTIA  105 (290)
T ss_dssp             EEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCC------CCCSSCTTCCHHHHH
T ss_pred             EEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECC-CCCeeCCcChHHHhcccccccccchhHH
Confidence            345589999999999999999999999999999999999999999999999 7999999999988654321       23


Q ss_pred             HHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccC-cccccccccccchhhH
Q psy504          114 RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPG-AGGTQRLPRIVGIPLA  192 (358)
Q Consensus       114 ~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~-~g~s~~L~r~iG~~~A  192 (358)
                      ..+...++.++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|++++|..+|
T Consensus       106 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~~~A  185 (290)
T 3sll_A          106 LRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRA  185 (290)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhCHHHH
Confidence            456677888999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHH-Hhhhccccccceecccccc
Q psy504          193 ALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI-VWNYNASIEMSYCGFSLLN  258 (358)
Q Consensus       193 ~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~-~~n~~~~~e~~~~gk~L~~  258 (358)
                      ++++  |||++++|       ++|+++|||++|++..+.......+. ....+++......++.+..
T Consensus       186 ~~ll--ltG~~i~A-------~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~  243 (290)
T 3sll_A          186 SDIM--LTGRDVDA-------DEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTIWS  243 (290)
T ss_dssp             HHHH--HHCCCEEH-------HHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHH--HcCCCCCH-------HHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999  99999999       99999999999998755443333332 2223344444444444433

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=2.6e-43  Score=335.52  Aligned_cols=208  Identities=21%  Similarity=0.251  Sum_probs=162.2

Q ss_pred             ecC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccc---cCHH-----HHH
Q psy504           44 ERP-GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT---LNED-----QIR  114 (358)
Q Consensus        44 ~~~-~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~---~~~~-----~~~  114 (358)
                      .++ +|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..   ....     ...
T Consensus        35 ~~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  113 (298)
T 3qre_A           35 ATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGR-GRGFCAGAYLGSADAAAGYDKTMAKAKDAN  113 (298)
T ss_dssp             ECTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSEECC----------------------
T ss_pred             EeCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCHHHHhhccccccccccchhHH
Confidence            367 999999999999999999999999999999999999999999999 799999999998865   2211     112


Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHh
Q psy504          115 SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAAL  194 (358)
Q Consensus       115 ~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~  194 (358)
                      .+....+.++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus       114 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~e  193 (298)
T 3qre_A          114 LADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALD  193 (298)
T ss_dssp             -------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhcCHHHHHH
Confidence            22233456677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHH-hhhc-cccccceecccccccCc
Q psy504          195 YEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIV-WNYN-ASIEMSYCGFSLLNTWG  261 (358)
Q Consensus       195 ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~-~n~~-~~~e~~~~gk~L~~~~g  261 (358)
                      |+  |||++++|       ++|+++|||++|++..+......++.. ...+ ++......++.+...+.
T Consensus       194 ll--ltg~~i~A-------~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~a~~~~K~~l~~~~~  253 (298)
T 3qre_A          194 LL--LSGRTFLA-------EEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDAT  253 (298)
T ss_dssp             HH--HHCCEEEH-------HHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGG
T ss_pred             HH--HcCCCCCH-------HHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhhc
Confidence            99  99999999       999999999999987554443333322 2233 34344444444444333

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=7.1e-43  Score=325.97  Aligned_cols=181  Identities=25%  Similarity=0.406  Sum_probs=158.3

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHH-HHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVS-TLR  121 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~-~~~  121 (358)
                      +.+++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||. |++||+|+|++++......+  .+.. .++
T Consensus         8 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~   84 (257)
T 2ej5_A            8 EVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGA-GRAFCAGEDLSGVTEEMDHG--DVLRSRYA   84 (257)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCC-------CHH--HHHHHTHH
T ss_pred             EeECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCCcCHHHHhhccchh--HHHHHHHH
Confidence            3478999999999999999999999999999999999999999999999 79999999999876532111  1112 256


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      +++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||
T Consensus        85 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--ltg  162 (257)
T 2ej5_A           85 PMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELA--VLG  162 (257)
T ss_dssp             HHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHH--HHC
T ss_pred             HHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHH--HhC
Confidence            788899999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHH
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHI  235 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~  235 (358)
                      +.++|       ++|+++|||+++++..+.....
T Consensus       163 ~~~~a-------~eA~~~GLv~~vv~~~~l~~~a  189 (257)
T 2ej5_A          163 EKVTA-------EEAAALGLATKVIPLSDWEEEV  189 (257)
T ss_dssp             CCEEH-------HHHHHHTCCSEEECGGGHHHHH
T ss_pred             CccCH-------HHHHHcCCcceecChhHHHHHH
Confidence            99999       9999999999999865443333

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=1e-42  Score=326.05  Aligned_cols=211  Identities=18%  Similarity=0.280  Sum_probs=176.5

Q ss_pred             EeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc------CHHHH
Q psy504           40 HNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL------NEDQI  113 (358)
Q Consensus        40 ~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~------~~~~~  113 (358)
                      .++..+++|++|+||||++ |+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++...      .....
T Consensus         9 ~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~   86 (263)
T 3l3s_A            9 LGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGP-GRIFCAGHDLKEIGRHRADPDEGRAFV   86 (263)
T ss_dssp             EEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECC-SSEEECCSCSCCCCC-----CCSHHHH
T ss_pred             EEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcChHHHhhccccccccHHHH
Confidence            3445589999999999999 99999999999999999999999999999999 6999999999998764      23345


Q ss_pred             HHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHH
Q psy504          114 RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA  193 (358)
Q Consensus       114 ~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~  193 (358)
                      ..+...++.++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++|..+|+
T Consensus        87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~~A~  165 (263)
T 3l3s_A           87 TDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGRRAVT  165 (263)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCHHHHH
Confidence            5667778889999999999999999999999999999999999999999999999999999 567899999999999999


Q ss_pred             hhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHH-HhhhccccccceecccccccCcc
Q psy504          194 LYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI-VWNYNASIEMSYCGFSLLNTWGD  262 (358)
Q Consensus       194 ~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~-~~n~~~~~e~~~~gk~L~~~~g~  262 (358)
                      +++  +||++++|       ++|+++|||+++++..+.......+. ....+++......++.+...+..
T Consensus       166 ~l~--ltg~~~~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~  226 (263)
T 3l3s_A          166 EMA--LTGATYDA-------DWALAAGLINRILPEAALATHVADLAGALAARNQAPLRRGLETLNRHLEL  226 (263)
T ss_dssp             HHH--HHCCEEEH-------HHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS
T ss_pred             HHH--HcCCCCCH-------HHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcC
Confidence            999  99999999       99999999999997644333333332 22233444444444444444433

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=5.1e-43  Score=328.51  Aligned_cols=174  Identities=25%  Similarity=0.327  Sum_probs=159.4

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcc---ccCHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL---TLNEDQIRSFVST  119 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~---~~~~~~~~~~~~~  119 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.   ...... ......
T Consensus        10 ~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~-~~~~~~   87 (266)
T 3fdu_A           10 NLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGA-EHDFTAGNDMKDFMGFVQNPNAG-PAGQVP   87 (266)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCHHHHHHHHHSCCCS-CGGGSH
T ss_pred             EEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCCeECCcCHHHHhhhccccchh-hHHHHH
Confidence            3479999999999999999999999999999999999999999999999 79999999999876   322111 022344


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      .+.++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +
T Consensus        88 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~--l  165 (266)
T 3fdu_A           88 PFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELL--F  165 (266)
T ss_dssp             HHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHH--H
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHHHHHH--H
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEe
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVI  227 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~  227 (358)
                      ||+.++|       ++|+++|||+++++
T Consensus       166 tg~~i~A-------~eA~~~GLv~~vv~  186 (266)
T 3fdu_A          166 TAKKFNA-------ETALQAGLVNEIVE  186 (266)
T ss_dssp             HCCEECH-------HHHHHTTSCSEECS
T ss_pred             hCCCcCH-------HHHHHCCCHHHHHH
Confidence            9999999       99999999999997

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=6.1e-43  Score=326.09  Aligned_cols=181  Identities=25%  Similarity=0.461  Sum_probs=163.8

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..      ..+...++.
T Consensus        11 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~------~~~~~~~~~   83 (255)
T 3p5m_A           11 EHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGA-GRAFCSGGDLTGGDT------AGAADAANR   83 (255)
T ss_dssp             EEETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCEECC---CH------HHHHHHHHH
T ss_pred             EEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCCCChhhhcc------hHHHHHHHH
Confidence            3479999999999999999999999999999999999999999999999 699999999998762      145566778


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||+
T Consensus        84 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~--ltg~  161 (255)
T 3p5m_A           84 VVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMA--MTAE  161 (255)
T ss_dssp             HHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHH--HHCC
T ss_pred             HHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHH--HcCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI  239 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~  239 (358)
                      +++|       ++|+++|||+++++..+.......+.
T Consensus       162 ~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~a  191 (255)
T 3p5m_A          162 KISA-------ATAFEWGMISHITSADEYESVLTDVL  191 (255)
T ss_dssp             CEEH-------HHHHHTTSCSEECCTTCHHHHHHHHH
T ss_pred             CcCH-------HHHHHCCCCCEeeCHHHHHHHHHHHH
Confidence            9999       99999999999998765444444443

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.8e-42  Score=324.70  Aligned_cols=180  Identities=27%  Similarity=0.479  Sum_probs=163.5

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEee-cCCCceecCCCchhccccCHHHHHHHHHHH-
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS-LVKDVFCAGADLKHRLTLNEDQIRSFVSTL-  120 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg-~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~-  120 (358)
                      +.+++|++|+|||| ++|+||.+|+.+|.++++.++.|+++|+||||| . |++||+|+|++++... ......+...+ 
T Consensus        14 ~~~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~-g~~F~aG~Dl~~~~~~-~~~~~~~~~~~~   90 (265)
T 2ppy_A           14 FKEDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDV-PKFFSAGADINFLRSA-DPRFKTQFCLFC   90 (265)
T ss_dssp             EEETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECS-TTEEECCBCHHHHTTS-CHHHHHHHHHHH
T ss_pred             EeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCC-CCeeeeCcCHHHHhcc-chhHHHHHHHHH
Confidence            34789999999999 899999999999999999999999999999999 6 8999999999988652 22233444556 


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCe-EEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV-RMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a-~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      ++++.++.++|||+||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|++++|..+|++++  +
T Consensus        91 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--l  168 (265)
T 2ppy_A           91 NETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMN--I  168 (265)
T ss_dssp             HHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHH--H
T ss_pred             HHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHH--H
Confidence            788899999999999999999999999999999999999999 9999999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHH
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH  234 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~  234 (358)
                      ||++++|       ++|+++|||+++++..+....
T Consensus       169 tg~~~~a-------~eA~~~GLv~~vv~~~~l~~~  196 (265)
T 2ppy_A          169 TGETITP-------QEALEIGLVNRVFPQAETRER  196 (265)
T ss_dssp             HCCCBCH-------HHHHHHTSSSEEECGGGHHHH
T ss_pred             hCCccCH-------HHHHHCCCcceecCHHHHHHH
Confidence            9999999       999999999999976544333

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=2.9e-42  Score=325.67  Aligned_cols=184  Identities=20%  Similarity=0.297  Sum_probs=161.2

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH----HHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ----IRSFVST  119 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~----~~~~~~~  119 (358)
                      .+++|++|+||||+++|+||.+|+.+|.++++.++.|+++ +|||||. |++||+|+|++++.......    ...+...
T Consensus        32 ~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  109 (280)
T 2f6q_A           32 SEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGN-GDYYSSGNDLTNFTDIPPGGVEEKAKNNAVL  109 (280)
T ss_dssp             EETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEES-TTCSBCCBCC----CCCTTHHHHHHHHHHHH
T ss_pred             EECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCC-CCCcccCCCHHHHhhcCcchhhHHHHHHHHH
Confidence            4789999999999999999999999999999999999999 9999999 79999999999886543222    1223445


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      +++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +
T Consensus       110 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~--l  187 (280)
T 2f6q_A          110 LREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEML--I  187 (280)
T ss_dssp             HHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHH--T
T ss_pred             HHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHHHHHHHH--H
Confidence            67788899999999999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      ||++++|       ++|+++|||+++++..+.......+
T Consensus       188 tg~~~~A-------~eA~~~GLv~~vv~~~~l~~~a~~~  219 (280)
T 2f6q_A          188 FGKKLTA-------GEACAQGLVTEVFPDSTFQKEVWTR  219 (280)
T ss_dssp             TCCCEEH-------HHHHHTTSCSEEECTTTHHHHHHHH
T ss_pred             cCCCCCH-------HHHHHCCCcceEECHHHHHHHHHHH
Confidence            9999999       9999999999999875544433333

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=6.2e-43  Score=337.23  Aligned_cols=185  Identities=22%  Similarity=0.302  Sum_probs=160.2

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCC------ceecCCCchhccccCH--------
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKD------VFCAGADLKHRLTLNE--------  110 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~------~FsaG~Dl~~~~~~~~--------  110 (358)
                      +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|++      +||+|+|++++.....        
T Consensus        64 ~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~  143 (334)
T 3t8b_A           64 DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTA  143 (334)
T ss_dssp             SSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC------------
T ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccccccc
Confidence            58999999999999999999999999999999999999999999999544      9999999998653211        


Q ss_pred             ---HHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEc-CCeEEeecceecccccCcccccccccc
Q psy504          111 ---DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIPGAGGTQRLPRI  186 (358)
Q Consensus       111 ---~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~rias-e~a~f~~pe~~lGl~p~~g~s~~L~r~  186 (358)
                         .........+..++..+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|+|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r~  223 (334)
T 3t8b_A          144 DTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQ  223 (334)
T ss_dssp             ----------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCSCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCcccHHHHHHHH
Confidence               0011112235567889999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             cchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          187 VGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       187 iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      +|..+|++|+  |||++++|       ++|+++|||++|++..+.......+
T Consensus       224 vG~~~A~ell--ltG~~i~A-------~eA~~~GLV~~vv~~~~l~~~a~~~  266 (334)
T 3t8b_A          224 VGQKFAREIF--FLGRTYTA-------EQMHQMGAVNAVAEHAELETVGLQW  266 (334)
T ss_dssp             HHHHHHHHHH--HHCCEEEH-------HHHHHHTSCSEEECGGGHHHHHHHH
T ss_pred             hhHHHHHHHH--HhCCcCCH-------HHHHHCCCCcEecCHHHHHHHHHHH
Confidence            9999999999  99999999       9999999999999875544443333

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=1.1e-42  Score=324.87  Aligned_cols=178  Identities=31%  Similarity=0.475  Sum_probs=161.2

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++...... ...+...+ +
T Consensus        10 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~-~~~~~~~~-~   86 (258)
T 2pbp_A           10 RQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGR-GRAFAAGADIQEMAKDDPI-RLEWLNQF-A   86 (258)
T ss_dssp             EEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCCCHHHHHTCCHH-HHHHHCTT-H
T ss_pred             EeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccch-hHHHHHHH-H
Confidence            3478999999999999999999999999999999999999999999998 7999999999987654432 22222333 6


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||+
T Consensus        87 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--ltg~  164 (258)
T 2pbp_A           87 DWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWL--WTGA  164 (258)
T ss_dssp             HHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHH--HHCC
T ss_pred             HHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHHHHH--HcCC
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCcc
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQP  232 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~  232 (358)
                      .++|       ++|+++|||+++++..+..
T Consensus       165 ~~~a-------~eA~~~GLv~~vv~~~~l~  187 (258)
T 2pbp_A          165 RMSA-------KEAEQLGIVNRVVSPELLM  187 (258)
T ss_dssp             CEEH-------HHHHHTTSCSEEECGGGHH
T ss_pred             ccCH-------HHHHHcCCcceeeChHHHH
Confidence            9999       9999999999999765433

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=1.2e-42  Score=325.00  Aligned_cols=183  Identities=22%  Similarity=0.296  Sum_probs=167.0

Q ss_pred             eeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHH
Q psy504           41 NSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL  120 (358)
Q Consensus        41 l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~  120 (358)
                      .++.+++|++|+||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.+|++||+|+|++++.....+....+...+
T Consensus         8 ~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   86 (260)
T 1sg4_A            8 EPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAV   86 (260)
T ss_dssp             EEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHH
T ss_pred             EEEecCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHH
Confidence            34557899999999997 79999999999999999999999999999999867999999999998765444445566677


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEc--CCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA--SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~rias--e~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      ++++.++.++|||+||+|||+|+|||++|+++||+|||+  ++++|++||+++|++|++|++++|++++|..+|++++  
T Consensus        87 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ll--  164 (260)
T 1sg4_A           87 QELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERAL--  164 (260)
T ss_dssp             HHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHH--
T ss_pred             HHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHHH--
Confidence            888999999999999999999999999999999999999  8999999999999999999999999999999999999  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecCCccH
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPV  233 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~  233 (358)
                      ++|+.++|       ++|+++|||+++++..+...
T Consensus       165 ltg~~~~a-------~eA~~~GLv~~vv~~~~l~~  192 (260)
T 1sg4_A          165 QLGLLFPP-------AEALQVGIVDQVVPEEQVQS  192 (260)
T ss_dssp             HHTCCBCH-------HHHHHHTSSSEEECGGGHHH
T ss_pred             HcCCcCCH-------HHHHHcCCCCEecCHHHHHH
Confidence            99999999       99999999999997644333

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=1.6e-42  Score=326.66  Aligned_cols=177  Identities=25%  Similarity=0.457  Sum_probs=160.5

Q ss_pred             eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc-------CH----
Q psy504           42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-------NE----  110 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~-------~~----  110 (358)
                      +..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++...       ..    
T Consensus         8 ~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~   86 (275)
T 1dci_A            8 TSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVARIA   86 (275)
T ss_dssp             EEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCHHHHHHHHTSCCCSSHHHHH
T ss_pred             EEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcChHHHhhcccccccchhhhhh
Confidence            33467899999999999999999999999999999999999999999999 7999999999987532       11    


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccch-
Q psy504          111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI-  189 (358)
Q Consensus       111 ~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~-  189 (358)
                      .....+...++.++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|. 
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  166 (275)
T 1dci_A           87 WYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNR  166 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCcH
Confidence            1122334556778889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhHHhhhhhhcccccccccccccchhhHhcCCceEEEec
Q psy504          190 PLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       190 ~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                      .+|++|+  +||++++|       ++|+++|||+++++.
T Consensus       167 ~~A~~l~--ltg~~~~a-------~eA~~~GLv~~vv~~  196 (275)
T 1dci_A          167 SLVNELT--FTARKMMA-------DEALDSGLVSRVFPD  196 (275)
T ss_dssp             HHHHHHH--HHCCEEEH-------HHHHHHTSSSEEESS
T ss_pred             HHHHHHH--HcCCCCCH-------HHHHHcCCcceecCC
Confidence            9999999  99999999       999999999999976

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=1.5e-42  Score=319.41  Aligned_cols=205  Identities=16%  Similarity=0.083  Sum_probs=173.0

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+ .|+||.+|+.+|.++++.+++| ++|+|||||. |++||+|.|++++.....+....+....++
T Consensus        10 ~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   86 (233)
T 3r6h_A           10 THDDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGN-HRVFSGGFDLKVLTSGEAKPAIDMLRGGFE   86 (233)
T ss_dssp             EEETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECC-SSEEECCSCHHHHC---CHHHHHHHHHHHH
T ss_pred             EEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECC-CCCccCCcChHHHhccChHHHHHHHHHHHH
Confidence            347999999999985 6999999999999999999987 6899999999 799999999999877545555667778888


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||+
T Consensus        87 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~l~--ltg~  164 (233)
T 3r6h_A           87 LSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAA--GLAK  164 (233)
T ss_dssp             HHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHHHH--HSCC
T ss_pred             HHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHHHH--HcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHHHHh-hhccccccceeccccccc
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVW-NYNASIEMSYCGFSLLNT  259 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~-n~~~~~e~~~~gk~L~~~  259 (358)
                      +++|       ++|+++|||+++++..+......++... ...++......++.+...
T Consensus       165 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~  215 (233)
T 3r6h_A          165 TFFG-------ETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQAHNATKLRARAE  215 (233)
T ss_dssp             EECH-------HHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHTTHH
T ss_pred             cCCH-------HHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999       9999999999999875544443333332 233333333344434333

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=9.2e-43  Score=328.62  Aligned_cols=184  Identities=30%  Similarity=0.489  Sum_probs=163.8

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++.......  ........
T Consensus        30 ~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~  106 (278)
T 3h81_A           30 ERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGS-AKAFAAGADIKEMADLTFAD--AFTADFFA  106 (278)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECC-SSEEECCBCSHHHHTCCHHH--HHHHTTTG
T ss_pred             EEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCCeecCcCHHHHhccChhh--HHHHHHHH
Confidence            3478999999999999999999999999999999999999999999997 89999999999987655433  22222222


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      .+.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  |||+
T Consensus       107 ~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l~--ltG~  184 (278)
T 3h81_A          107 TWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLI--LTGR  184 (278)
T ss_dssp             GGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHH--HHCC
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHHHHH--HhCC
Confidence            37789999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      +++|       ++|+++|||+++++..+.......+
T Consensus       185 ~~~A-------~eA~~~GLv~~vv~~~~l~~~a~~~  213 (278)
T 3h81_A          185 TMDA-------AEAERSGLVSRVVPADDLLTEARAT  213 (278)
T ss_dssp             CEEH-------HHHHHHTSCSEEECGGGHHHHHHHH
T ss_pred             CcCH-------HHHHHCCCccEEeChhHHHHHHHHH
Confidence            9999       9999999999999875544443333

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=3.1e-42  Score=322.57  Aligned_cols=184  Identities=20%  Similarity=0.227  Sum_probs=164.3

Q ss_pred             ecC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc-CHHHHHHHHHHHH
Q psy504           44 ERP-GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-NEDQIRSFVSTLR  121 (358)
Q Consensus        44 ~~~-~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~-~~~~~~~~~~~~~  121 (358)
                      .++ +|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++... ..+....+...++
T Consensus        29 ~~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  107 (263)
T 2j5g_A           29 RDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGS-GDAWMAEIDFPSLGDVTNPREWDKTYWEGK  107 (263)
T ss_dssp             ECTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECB-TTEEECEECSGGGCCTTSHHHHHHHHHHHH
T ss_pred             EcCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCCcccCcCHHHHhccCCHHHHHHHHHHHH
Confidence            366 899999999999999999999999999999999999999999999 7999999999998653 2233334455567


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEee-cceecccccCcccccccccccchhhHHhhhhhhc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL-VETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN  200 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~-pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt  200 (358)
                      .++.++.++|||+||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|++++|..+|++++  +|
T Consensus       108 ~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll--lt  184 (263)
T 2j5g_A          108 KVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFL--FT  184 (263)
T ss_dssp             HHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHH--HT
T ss_pred             HHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHH--Hc
Confidence            8889999999999999999999 5999999999999999999999 999999999999999999999999999999  99


Q ss_pred             ccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      |++++|       ++|+++|||+++++..+.......+
T Consensus       185 G~~~~A-------~eA~~~GLv~~vv~~~~l~~~a~~~  215 (263)
T 2j5g_A          185 QEKLTA-------QQAYELNVVHEVLPQSKLMERAWEI  215 (263)
T ss_dssp             TCCEEH-------HHHHHTTSCSEEECGGGHHHHHHHH
T ss_pred             CCCCCH-------HHHHHCCCccEecChHHHHHHHHHH
Confidence            999999       9999999999999765543333333

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.7e-42  Score=322.61  Aligned_cols=181  Identities=25%  Similarity=0.357  Sum_probs=161.5

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLR  121 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~~~  121 (358)
                      +++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++...   ...........++
T Consensus         6 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   84 (253)
T 1uiy_A            6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLM   84 (253)
T ss_dssp             CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcChHHHHhcccCCchhHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999 7999999999987643   2221111112267


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|..+|++++  +||
T Consensus        85 ~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~--ltg  161 (253)
T 1uiy_A           85 RLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLL--LTG  161 (253)
T ss_dssp             HHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHH--HHC
T ss_pred             HHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHH--HhC
Confidence            788899999999999999999999999999999999999999999999999999999 99999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHH
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHIS  236 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~  236 (358)
                      ++++|       ++|+++|||+++++..+......
T Consensus       162 ~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~  189 (253)
T 1uiy_A          162 RLVEA-------REAKALGLVNRIAPPGKALEEAK  189 (253)
T ss_dssp             CEEEH-------HHHHHHTSCSEEECTTCHHHHHH
T ss_pred             CccCH-------HHHHHCCCcceecChhHHHHHHH
Confidence            99999       99999999999998755433333

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=2.3e-42  Score=327.32  Aligned_cols=184  Identities=20%  Similarity=0.326  Sum_probs=164.7

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC-HHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTLR  121 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~-~~~~~~~~~~~~  121 (358)
                      +.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++.... .+....+...++
T Consensus        38 ~~~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  116 (287)
T 2vx2_A           38 RQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAE-GPVFSSGHDLKELTEEQGRDYHAEVFQTCS  116 (287)
T ss_dssp             EEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEES-SSEEECCSCCC-CCGGGCHHHHHHHHHHHH
T ss_pred             EEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcCHHHHhcccchhHHHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999999 79999999999876432 222344556677


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      +++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |++++|..+|++++  +||
T Consensus       117 ~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~ll--ltg  193 (287)
T 2vx2_A          117 KVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEML--FTG  193 (287)
T ss_dssp             HHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHHHH--HHC
T ss_pred             HHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHHHH--HhC
Confidence            889999999999999999999999999999999999999999999999999999999999 99999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHH
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISA  237 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~  237 (358)
                      ++++|       ++|+++|||++|++..+.......
T Consensus       194 ~~i~A-------~eA~~~GLv~~vv~~~~l~~~a~~  222 (287)
T 2vx2_A          194 EPISA-------QEALLHGLLSKVVPEAELQEETMR  222 (287)
T ss_dssp             CCEEH-------HHHHHHTSCSEEECGGGHHHHHHH
T ss_pred             CCCCH-------HHHHHCCCcceecCHHHHHHHHHH
Confidence            99999       999999999999986544333333

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.4e-42  Score=325.22  Aligned_cols=181  Identities=26%  Similarity=0.327  Sum_probs=162.6

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLR  121 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~~~  121 (358)
                      +++|++|+||||+ +|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++ +...   ..+....+...++
T Consensus        18 ~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~-~~~~~~~~~~~~~~~~~~~~   94 (264)
T 1wz8_A           18 RPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFG-LIEEMRASHEALLRVFWEAR   94 (264)
T ss_dssp             ETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEG-GGCCBCCBCHH-HHHHHHHCHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCCcccCccc-cccccccchHHHHHHHHHHH
Confidence            7899999999999 999999999999999999999999999999999 79999999998 6442   1111223456677


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      +++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||
T Consensus        95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~--ltg  172 (264)
T 1wz8_A           95 DLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHL--LLN  172 (264)
T ss_dssp             HHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHH--HHT
T ss_pred             HHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHHHHH--HcC
Confidence            889999999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHH
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISA  237 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~  237 (358)
                      ++++|       ++|+++|||+++++..+.......
T Consensus       173 ~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~  201 (264)
T 1wz8_A          173 EPLTG-------EEAERLGLVALAVEDEKVYEKALE  201 (264)
T ss_dssp             CCEEH-------HHHHHHTSSSEEECGGGHHHHHHH
T ss_pred             CCCCH-------HHHHHCCCceeecChhHHHHHHHH
Confidence            99999       999999999999976544333333

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=3.9e-43  Score=331.31  Aligned_cols=207  Identities=25%  Similarity=0.338  Sum_probs=158.3

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.................
T Consensus        25 ~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~  103 (278)
T 4f47_A           25 EQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGA-GGYFCAGMDLKAATKKPPGDSFKDGSYDPS  103 (278)
T ss_dssp             EEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCCC----------------------CTT
T ss_pred             EEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCcccCCcChHhhhccchhhhHHHHHHHHH
Confidence            3479999999999999999999999999999999999999999999999 689999999998865433211111112334


Q ss_pred             HHHHHH---cCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          123 MTCQLE---SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       123 l~~~i~---~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      ++..+.   ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  |
T Consensus       104 ~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~--l  181 (278)
T 4f47_A          104 RIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLL--L  181 (278)
T ss_dssp             CBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHHHHHHH--H
T ss_pred             HHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHH--H
Confidence            455666   99999999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHh-hhccccccceeccccccc
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVW-NYNASIEMSYCGFSLLNT  259 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~-n~~~~~e~~~~gk~L~~~  259 (358)
                      ||++++|       ++|+++|||+++++..+.......+... ..+++......++.+...
T Consensus       182 tg~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~  235 (278)
T 4f47_A          182 TGRHITA-------AEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPLAVQAILRTIRET  235 (278)
T ss_dssp             HCCCEEH-------HHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHT
T ss_pred             cCCcCCH-------HHHHHCCCceEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            9999999       9999999999999876544443333322 233333333334333333

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=3.1e-42  Score=326.32  Aligned_cols=182  Identities=27%  Similarity=0.396  Sum_probs=166.5

Q ss_pred             CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc-CHHHHHHHHHHHHHHH
Q psy504           46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-NEDQIRSFVSTLRYMT  124 (358)
Q Consensus        46 ~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~-~~~~~~~~~~~~~~l~  124 (358)
                      ++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++... .......+...++.++
T Consensus        34 ~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~  112 (286)
T 3myb_A           34 RGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAAS-GKAFCAGHDLKEMRAEPSREYYEKLFARCTDVM  112 (286)
T ss_dssp             TSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEC-SSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcChhhhhccccHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999 6999999999998763 3344556777888999


Q ss_pred             HHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccc
Q psy504          125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCM  204 (358)
Q Consensus       125 ~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i  204 (358)
                      .++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|++++|..+|++|+  |+|+++
T Consensus       113 ~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~ll--ltG~~i  189 (286)
T 3myb_A          113 LAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFEML--VTGEFV  189 (286)
T ss_dssp             HHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHHHH--HHCCCE
T ss_pred             HHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHHHHH--HcCCCC
Confidence            99999999999999999999999999999999999999999999999999 778899999999999999999  999999


Q ss_pred             ccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          205 SSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       205 ~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      +|       ++|+++|||++|++..+.......+
T Consensus       190 ~A-------~eA~~~GLv~~vv~~~~l~~~a~~~  216 (286)
T 3myb_A          190 SA-------DDAKGLGLVNRVVAPKALDDEIEAM  216 (286)
T ss_dssp             EH-------HHHHHHTSCSEEECGGGHHHHHHHH
T ss_pred             CH-------HHHHHCCCCcEecCHHHHHHHHHHH
Confidence            99       9999999999999865544443333

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=5.4e-43  Score=329.35  Aligned_cols=210  Identities=23%  Similarity=0.281  Sum_probs=175.8

Q ss_pred             EEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC--HHHHHHH
Q psy504           39 YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQIRSF  116 (358)
Q Consensus        39 ~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~--~~~~~~~  116 (358)
                      +.++..+++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++....  ......+
T Consensus        15 v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~   92 (272)
T 3qk8_A           15 LRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGE-GKAFSSGGSFELIDETIGDYEGRIRI   92 (272)
T ss_dssp             EEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEES-SSCSBCEECHHHHHHHHHCHHHHHHH
T ss_pred             EEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCeeCCcCHHHHhccccchHHHHHH
Confidence            3333334589999999999 999999999999999999999999999999999 69999999999885432  2223455


Q ss_pred             HHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhh
Q psy504          117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE  196 (358)
Q Consensus       117 ~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll  196 (358)
                      ....+.++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++
T Consensus        93 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~  172 (272)
T 3qk8_A           93 MREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYL  172 (272)
T ss_dssp             HHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            66778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccccc
Q psy504          197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNT  259 (358)
Q Consensus       197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~~  259 (358)
                        +||++++|       ++|+++|||++|++..+.......+.......++......|.+++.
T Consensus       173 --ltg~~~~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~  226 (272)
T 3qk8_A          173 --LTCETLSG-------EEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIRWTKRSLNH  226 (272)
T ss_dssp             --HHCCCEEH-------HHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             --HcCCCCCH-------HHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              99999999       9999999999999875544443333333233343333344444433

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=1.4e-42  Score=327.16  Aligned_cols=182  Identities=24%  Similarity=0.351  Sum_probs=159.2

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH----HHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE----DQIRSFVS  118 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~----~~~~~~~~  118 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++.....    .....+..
T Consensus        14 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~   92 (276)
T 2j5i_A           14 EIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGA-GEAWTAGMDLKEYFREVDAGPEILQEKIRR   92 (276)
T ss_dssp             EEETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEES-TTCSBCCBCHHHHHHHHHHSCTTHHHHHHH
T ss_pred             EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCCcCCcChhhHhhccccchhHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999999 799999999998743111    11122222


Q ss_pred             HHHHH-HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          119 TLRYM-TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       119 ~~~~l-~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      ....+ +..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ 
T Consensus        93 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~-  171 (276)
T 2j5i_A           93 EASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYI-  171 (276)
T ss_dssp             HHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHH-
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHH-
Confidence            23333 6678899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEecCCccHH
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH  234 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~  234 (358)
                       +||++++|       ++|+++|||+++++..+....
T Consensus       172 -ltg~~~~A-------~eA~~~GLv~~vv~~~~l~~~  200 (276)
T 2j5i_A          172 -MTGKTFGG-------QKAAEMGLVNESVPLAQLREV  200 (276)
T ss_dssp             -HHCCEEEH-------HHHHHHTSSSEEECHHHHHHH
T ss_pred             -HhCCcccH-------HHHHHcCCccEeeCHHHHHHH
Confidence             99999999       999999999999976443333

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=1.9e-42  Score=326.16  Aligned_cols=206  Identities=26%  Similarity=0.267  Sum_probs=166.2

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEee-----cCCCceecCCCchhccccCHHHHH-HH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS-----LVKDVFCAGADLKHRLTLNEDQIR-SF  116 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg-----~gg~~FsaG~Dl~~~~~~~~~~~~-~~  116 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||     .|+++||+|.|++++......... ..
T Consensus        15 ~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~   94 (275)
T 4eml_A           15 YKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTP   94 (275)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------------
T ss_pred             EEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhhHH
Confidence            347999999999999999999999999999999999999999999999     844799999999987642211111 11


Q ss_pred             HHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhh
Q psy504          117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE  196 (358)
Q Consensus       117 ~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll  196 (358)
                      ....+.++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+
T Consensus        95 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~ll  174 (275)
T 4eml_A           95 RLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIW  174 (275)
T ss_dssp             CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhHHHHHHHHH
Confidence            12356788899999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             hhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHh-hhccccccceeccccc
Q psy504          197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVW-NYNASIEMSYCGFSLL  257 (358)
Q Consensus       197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~-n~~~~~e~~~~gk~L~  257 (358)
                        |||++++|       ++|+++|||++|++..+.......+... ..+++......++.+.
T Consensus       175 --ltg~~i~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~  227 (275)
T 4eml_A          175 --YLCRQYSA-------QEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIRCLKAAFN  227 (275)
T ss_dssp             --HHCCCEEH-------HHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             --HhCCCcCH-------HHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence              99999999       9999999999999875544443333332 2334433433443333

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=2.7e-42  Score=333.32  Aligned_cols=236  Identities=17%  Similarity=0.207  Sum_probs=167.3

Q ss_pred             ccCcCccccccCCCCCcccccCCCcceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEE
Q psy504            9 RLSPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL   88 (358)
Q Consensus         9 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVl   88 (358)
                      +.+|..+.+.+|..|..++..... ..+..+.+ +.+++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~-e~~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVl   85 (333)
T 3njd_A            8 HMGTLEAQTQGPGSMTHAIRPVDF-DNLKTMTY-EVTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILV   85 (333)
T ss_dssp             ---------------------CCT-TSCSSEEE-EEETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             cccchhhcccCCCcccCCCCCCCC-CCCCeEEE-EEECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence            456777788888888776664432 23333333 3479999999999999999999999999999999999999999999


Q ss_pred             eecCCCceecCCCchhccccCHH------------------------------HHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           89 RSLVKDVFCAGADLKHRLTLNED------------------------------QIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        89 tg~gg~~FsaG~Dl~~~~~~~~~------------------------------~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      ||. |++||+|.|++++......                              ....+...+..++..+.++||||||+|
T Consensus        86 tG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV  164 (333)
T 3njd_A           86 SGR-GEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKI  164 (333)
T ss_dssp             EES-TTSSBCCBC---------------CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEE
T ss_pred             ECC-CCceecCcCHHHHhhcccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            999 7999999999987543211                              112345566778889999999999999


Q ss_pred             ccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHh
Q psy504          139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR  218 (358)
Q Consensus       139 nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~  218 (358)
                      ||+|+|||++|+++||+|||+++++|++||+++|++|++|   +|++++|..+|++|+  |||++++|       ++|++
T Consensus       165 ~G~a~GgG~~LalacD~rias~~a~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ell--ltG~~i~A-------~eA~~  232 (333)
T 3njd_A          165 HGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLL--FTGDCITG-------AQAAE  232 (333)
T ss_dssp             CSEEETHHHHHHTTSSEEEECTTCEEECGGGGTTCCCTTC---CHHHHHCHHHHHHHH--TTCCEEEH-------HHHHH
T ss_pred             CCEEeHHHHHHHHhCCEEEECCCCeeechhhceeccCHHH---HHHHHHHHHHHHHHH--hcCCCCCH-------HHHHH
Confidence            9999999999999999999999999999999999999876   589999999999999  99999999       99999


Q ss_pred             cCCceEEEecCCccHHHHHHHHhhhcccc-ccceeccccccc
Q psy504          219 RGLVVTLVIKFSQPVHISALIVWNYNASI-EMSYCGFSLLNT  259 (358)
Q Consensus       219 ~GLv~~vv~~~~~~~~~~~l~~~n~~~~~-e~~~~gk~L~~~  259 (358)
                      +|||++|++..+.......+.......++ .....++.+...
T Consensus       233 ~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~~~K~~l~~~  274 (333)
T 3njd_A          233 WGLAVEAPDPADLDARTERLVERIAAMPVNQLIMAKLACNTA  274 (333)
T ss_dssp             TTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CCCccEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999875544444444333233333 333334333333

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=2.9e-42  Score=326.94  Aligned_cols=203  Identities=26%  Similarity=0.345  Sum_probs=164.2

Q ss_pred             CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH--HHHHHHHHHHHHH
Q psy504           46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE--DQIRSFVSTLRYM  123 (358)
Q Consensus        46 ~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~--~~~~~~~~~~~~l  123 (358)
                      ++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.....  +...........+
T Consensus        36 ~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~  115 (289)
T 3t89_A           36 DGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDF  115 (289)
T ss_dssp             TSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CTHHHH
T ss_pred             CCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999994469999999998754221  1111122345678


Q ss_pred             HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504          124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC  203 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~  203 (358)
                      +.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|..+|++|+  |||++
T Consensus       116 ~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~~A~~ll--ltG~~  193 (289)
T 3t89_A          116 QRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIW--FLCRQ  193 (289)
T ss_dssp             HHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHH--HHCCC
T ss_pred             HHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCHHHHHHHH--HcCCc
Confidence            8899999999999999999999999999999999999999999999999888888899999999999999999  99999


Q ss_pred             cccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504          204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL  257 (358)
Q Consensus       204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~  257 (358)
                      ++|       ++|+++|||+++++..+.......+.......++......|+++
T Consensus       194 i~A-------~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~~~~K~~l  240 (289)
T 3t89_A          194 YDA-------KQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAAL  240 (289)
T ss_dssp             EEH-------HHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             ccH-------HHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999       99999999999998765444444443332333333333334333

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=7.6e-42  Score=324.34  Aligned_cols=185  Identities=19%  Similarity=0.338  Sum_probs=163.8

Q ss_pred             eecCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH----HHHHHHH
Q psy504           43 PERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE----DQIRSFV  117 (358)
Q Consensus        43 ~~~~~V~~Itln-rp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~----~~~~~~~  117 (358)
                      +.+++|++|||| ||+++|+||.+|+.+|.++++.++.|+. |+|||||. |++||+|+|++++.....    .....+.
T Consensus        28 ~~~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~  105 (291)
T 2fbm_A           28 KKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAA-GSVFCCGLDFGYFVKHLRNNRNTASLEMV  105 (291)
T ss_dssp             EECSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEEC-SSCSBCCBCHHHHHHHHHHCHHHHHHHHH
T ss_pred             EEeCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECC-CCCccCCcCHHHHHhcccccchhHHHHHH
Confidence            347899999999 7999999999999999999999998875 99999999 799999999998753211    1223344


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      ..++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+ 
T Consensus       106 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~el~-  184 (291)
T 2fbm_A          106 DTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEML-  184 (291)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHH-
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhHHHHHHHH-
Confidence            5567788899999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                       |||++++|       ++|+++|||++|++..+.......+
T Consensus       185 -ltg~~i~A-------~eA~~~GLV~~vv~~~~l~~~a~~~  217 (291)
T 2fbm_A          185 -IAGRKLTA-------REACAKGLVSQVFLTGTFTQEVMIQ  217 (291)
T ss_dssp             -TSCCEEEH-------HHHHHTTSCSEEECSTTSHHHHHHH
T ss_pred             -HcCCccCH-------HHHHHCCCcceecChhHHHHHHHHH
Confidence             99999999       9999999999999876554444443

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=3.2e-42  Score=325.39  Aligned_cols=177  Identities=19%  Similarity=0.182  Sum_probs=159.0

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-------HHHH-
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-------DQIR-  114 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-------~~~~-  114 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++.....       .... 
T Consensus        14 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~   92 (280)
T 1pjh_A           14 RIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDDTNKYPSETSK   92 (280)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCCBCHHHHHC-------CCSSHHHH
T ss_pred             EEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcCHHHHhhcccccccchhhhHHH
Confidence            3478999999999999999999999999999999999999999999999 799999999998753211       1111 


Q ss_pred             ---HHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEc-CCeEEeecceecccccCcccccccccccchh
Q psy504          115 ---SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIPGAGGTQRLPRIVGIP  190 (358)
Q Consensus       115 ---~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~rias-e~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~  190 (358)
                         .+....+.++.++.++|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|++++|..
T Consensus        93 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~vG~~  172 (280)
T 1pjh_A           93 WVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN  172 (280)
T ss_dssp             HHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHHhCHH
Confidence               222334677889999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             hHHhhhhhhcccccccccccccchhhHhcCCceEEEecC
Q psy504          191 LAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKF  229 (358)
Q Consensus       191 ~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~  229 (358)
                      +|++++  |||++++|       ++|+++|||++|++..
T Consensus       173 ~A~~ll--ltg~~~~a-------~eA~~~GLv~~vv~~~  202 (280)
T 1pjh_A          173 TTYECL--MFNKPFKY-------DIMCENGFISKNFNMP  202 (280)
T ss_dssp             HHHHHH--HTTCCEEH-------HHHHHTTCCSEECCCC
T ss_pred             HHHHHH--HhCCCCCH-------HHHHHCCCcceeeCCc
Confidence            999999  99999999       9999999999999764

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=8.9e-42  Score=318.53  Aligned_cols=176  Identities=19%  Similarity=0.263  Sum_probs=161.5

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      .+++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++.....+....+....+++
T Consensus        22 ~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~  100 (257)
T 1szo_A           22 RDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTPHDWDEIIFEGQRL  100 (257)
T ss_dssp             EETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCEECGGGSCCSSHHHHHHHHHHHHHH
T ss_pred             EECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcC-CCccccCcCchhhhcCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999 7899999999998653333333445556788


Q ss_pred             HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEee-cceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL-VETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~-pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      +.++.++|||+||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|++++|..+|++++  ++|+
T Consensus       101 ~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~ll--ltG~  177 (257)
T 1szo_A          101 LNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFL--LTGQ  177 (257)
T ss_dssp             HHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHH--HTTC
T ss_pred             HHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHH--HcCC
Confidence            89999999999999999999 5999999999999999999999 999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCC
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      +++|       ++|+++|||+++++..+
T Consensus       178 ~~~A-------~eA~~~GLv~~vv~~~~  198 (257)
T 1szo_A          178 ELDA-------RTALDYGAVNEVLSEQE  198 (257)
T ss_dssp             EEEH-------HHHHHHTSCSEEECHHH
T ss_pred             CCCH-------HHHHHCCCceEEeChHH
Confidence            9999       99999999999997543

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=5.7e-42  Score=320.57  Aligned_cols=184  Identities=19%  Similarity=0.321  Sum_probs=162.7

Q ss_pred             eecCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH----HHHHHHH
Q psy504           43 PERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE----DQIRSFV  117 (358)
Q Consensus        43 ~~~~~V~~Itln-rp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~----~~~~~~~  117 (358)
                      +.+++|++|||| ||+++|+||.+|+.+|.++++.++.|+. |+|||||. |++||+|+|++++.....    .....+.
T Consensus        10 ~~~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~~-r~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   87 (261)
T 2gtr_A           10 RKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAV-GSVFCCGLDFIYFIRRLTDDRKRESTKMA   87 (261)
T ss_dssp             EEETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSSC-SCEEEEES-SSCSBCEECHHHHHHHHHHCHHHHHHHHH
T ss_pred             EEeCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCCC-EEEEEecC-CCccccccCchhhhhccccchhhHHHHHH
Confidence            347899999999 6999999999999999999999998874 99999999 799999999998754211    1223444


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      ..++.++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+ 
T Consensus        88 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~-  166 (261)
T 2gtr_A           88 EAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEML-  166 (261)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHH-
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHHHHHHH-
Confidence            5567888899999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEecCCccHHHHH
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISA  237 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~  237 (358)
                       |||++++|       ++|+++|||+++++..+.......
T Consensus       167 -ltg~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~  198 (261)
T 2gtr_A          167 -LSGRKLTA-------QEACGKGLVSQVFWPGTFTQEVMV  198 (261)
T ss_dssp             -HHCCCEEH-------HHHHHTTSCSEEECGGGHHHHHHH
T ss_pred             -HcCCCCCH-------HHHHHCCCcccccChhHHHHHHHH
Confidence             99999999       999999999999976554433333

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=3.2e-43  Score=329.17  Aligned_cols=206  Identities=26%  Similarity=0.357  Sum_probs=169.4

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..........  .....
T Consensus        16 ~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~--~~~~~   92 (262)
T 3r9q_A           16 EKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGD-NGTFCAGADLKAMGTDRGNELHP--HGPGP   92 (262)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCTTTTTSTTSCCCCT--TSSCT
T ss_pred             EEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHhccChhhHHH--hhhhH
Confidence            4578999999999999999999999999999999999999999999999 79999999999986543211000  01122


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      +...+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++++  +||+
T Consensus        93 ~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~--ltG~  170 (262)
T 3r9q_A           93 MGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLI--LTGR  170 (262)
T ss_dssp             TSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHH--HHCC
T ss_pred             HHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHHH--HcCC
Confidence            33456699999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHHHH-hhhccccccceecccccccC
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIV-WNYNASIEMSYCGFSLLNTW  260 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~-~n~~~~~e~~~~gk~L~~~~  260 (358)
                      +++|       ++|+++|||+++++..+.......+.. ...+++......++.+...+
T Consensus       171 ~~~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~  222 (262)
T 3r9q_A          171 PVHA-------NEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVRADRDSAIAQW  222 (262)
T ss_dssp             CEEH-------HHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTT
T ss_pred             cCCH-------HHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Confidence            9999       999999999999987665444444333 22344444444444444443

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=3.4e-42  Score=322.82  Aligned_cols=183  Identities=28%  Similarity=0.404  Sum_probs=156.0

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++ ..  .......+....+.
T Consensus        14 ~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~-~~--~~~~~~~~~~~~~~   89 (265)
T 3rsi_A           14 ERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGA-GSAYCVGGDLS-DG--WMVRDGSAPPLDPA   89 (265)
T ss_dssp             EEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSEECC-----------------CCCHH
T ss_pred             EEECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCCC-cc--cccchHHHHHHhHH
Confidence            3478999999999999999999999999999999999999999999999 68999999998 22  11111122223345


Q ss_pred             -HHHHH-H--cCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504          123 -MTCQL-E--SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       123 -l~~~i-~--~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                       ++.++ .  ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  
T Consensus        90 ~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--  167 (265)
T 3rsi_A           90 TIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMI--  167 (265)
T ss_dssp             HHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCHHHHHHHH--
T ss_pred             HHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHH--
Confidence             78888 8  99999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hcccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      +||++++|       ++|+++|||+++++..+.......+
T Consensus       168 ltg~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~  200 (265)
T 3rsi_A          168 LTGEPLTA-------FEAYHFGLVGHVVPAGTALDKARSL  200 (265)
T ss_dssp             HHCCCEEH-------HHHHHTTSCSEEESTTCHHHHHHHH
T ss_pred             HcCCCCCH-------HHHHHCCCccEecChhHHHHHHHHH
Confidence            99999999       9999999999999876544444443

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=1.2e-41  Score=319.39  Aligned_cols=171  Identities=26%  Similarity=0.409  Sum_probs=153.5

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccc-cCHHH----HHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT-LNEDQ----IRSFVS  118 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~-~~~~~----~~~~~~  118 (358)
                      .+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.. .....    ...+..
T Consensus        17 ~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   95 (267)
T 3oc7_A           17 TGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHT-GGTFCAGADLSEAGSGGSPSSAYDMAVERAR   95 (267)
T ss_dssp             HSSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEC-SSEEECCBC-----------CHHHHHHHHHH
T ss_pred             eeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCceeCCcCchhhhhccCchhhhhhHHHHHH
Confidence            589999999999999999999999999999999999999999999999 789999999999862 22211    124566


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL  198 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~  198 (358)
                      .+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+ ++|..+|++++  
T Consensus        96 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~vG~~~A~~l~--  172 (267)
T 3oc7_A           96 EMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KLSARAAARYY--  172 (267)
T ss_dssp             HHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TSCHHHHHHHH--
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-HhCHHHHHHHH--
Confidence            778899999999999999999999999999999999999999999999999999999999999999 89999999999  


Q ss_pred             hcccccccccccccchhhHhcCCceEE
Q psy504          199 LNNDCMSSLDTRYMWCTPYRRGLVVTL  225 (358)
Q Consensus       199 ltg~~i~a~~d~~mw~ea~~~GLv~~v  225 (358)
                      |||++++|       ++|+++|||+++
T Consensus       173 ltg~~~~a-------~eA~~~GLv~~v  192 (267)
T 3oc7_A          173 LTGEKFDA-------RRAEEIGLITMA  192 (267)
T ss_dssp             HHCCCBCH-------HHHHHHTSSSEE
T ss_pred             HcCCccCH-------HHHHHCCChhhh
Confidence            99999999       999999999999

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=4.8e-43  Score=324.58  Aligned_cols=184  Identities=17%  Similarity=0.284  Sum_probs=161.6

Q ss_pred             EeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHH
Q psy504           40 HNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVST  119 (358)
Q Consensus        40 ~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~  119 (358)
                      .+++.+++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++........     .
T Consensus         5 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~-----~   78 (243)
T 2q35_A            5 QLTELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGY-GNYFSSGASKEFLIRKTRGEV-----E   78 (243)
T ss_dssp             EEEEEETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECB-TTEEECBSCHHHHHHHHTTCC-----C
T ss_pred             EEEEeeCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCCChHHHhhccchhh-----H
Confidence            3445678999999999999999999999999999999999999999999999 799999999987643110000     1


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      .++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +
T Consensus        79 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--l  156 (243)
T 2q35_A           79 VLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMI--Y  156 (243)
T ss_dssp             CCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHH--H
T ss_pred             HHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHH--H
Confidence            24567889999999999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      ||++++|       ++|+++|||+++++..+......++
T Consensus       157 tg~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~  188 (243)
T 2q35_A          157 TGENYRG-------KELAERGIPFPVVSRQDVLNYAQQL  188 (243)
T ss_dssp             HCCCEEH-------HHHHHTTCSSCEECHHHHHHHHHHH
T ss_pred             cCCCCCH-------HHHHHcCCCCEecChhHHHHHHHHH
Confidence            9999999       9999999999999764433333333

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=9.3e-42  Score=313.88  Aligned_cols=184  Identities=16%  Similarity=0.220  Sum_probs=164.6

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+ .|+||.+|+.+|.++++.++.|  +++|||||. |++||+|.|++++.. ..+....+....+.
T Consensus        11 ~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~-g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~   85 (232)
T 3ot6_A           11 HLDDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKD--RAIVIVTGQ-PGILSGGYDLKVMTS-SAEAAINLVAQGST   85 (232)
T ss_dssp             EEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHT--TCEEEEECB-TEEEECCBCHHHHHH-CHHHHHHHHHHHHH
T ss_pred             EEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcC--CCEEEEECC-CCCccCCcCHHHHhh-ChHHHHHHHHHHHH
Confidence            347999999999985 6999999999999999999976  489999999 799999999999876 34445566777888


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC-eEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|+++++++++|..+|++++  +||
T Consensus        86 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l~--ltg  163 (232)
T 3ot6_A           86 LARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSV--INA  163 (232)
T ss_dssp             HHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHHH--TSC
T ss_pred             HHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHHH--HcC
Confidence            999999999999999999999999999999999999998 89999999999998888889999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHHHHH
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIV  240 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~  240 (358)
                      ++++|       ++|+++|||+++++..+......++..
T Consensus       164 ~~i~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a~  195 (232)
T 3ot6_A          164 EMFDP-------EGAMAAGFLDKVVSVEELQGAALAVAA  195 (232)
T ss_dssp             CEECH-------HHHHHHTSCSEEECTTTHHHHHHHHHH
T ss_pred             CccCH-------HHHHHCCCCCEecCHHHHHHHHHHHHH
Confidence            99999       999999999999987665544444443

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=1.2e-42  Score=324.25  Aligned_cols=178  Identities=31%  Similarity=0.506  Sum_probs=157.6

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++...         ..+..
T Consensus        14 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~-g~~F~aG~Dl~~~~~~---------~~~~~   83 (256)
T 3pe8_A           14 DTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGA-DPVFCAGLDLKELGDT---------TELPD   83 (256)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEES-TTCSBCCBCTTTC-----------------
T ss_pred             EEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcCHHHHhhh---------HHHHH
Confidence            3479999999999999999999999999999999999999999999999 7899999999987643         12233


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      +..++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  ++|+
T Consensus        84 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~--ltg~  161 (256)
T 3pe8_A           84 ISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMS--LTGD  161 (256)
T ss_dssp             -CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHHHH--HHCC
T ss_pred             HHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHHHH--HcCC
Confidence            44678899999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI  239 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~  239 (358)
                      +++|       ++|+++|||+++++..+.......+.
T Consensus       162 ~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~a  191 (256)
T 3pe8_A          162 YLSA-------QDALRAGLVTEVVAHDDLLTAARRVA  191 (256)
T ss_dssp             CEEH-------HHHHHHTSCSCEECGGGHHHHHHHHH
T ss_pred             CCCH-------HHHHHCCCCeEEeCHhHHHHHHHHHH
Confidence            9999       99999999999998755444444443

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=2.2e-43  Score=330.92  Aligned_cols=178  Identities=25%  Similarity=0.362  Sum_probs=160.2

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++...........+.. +.
T Consensus        12 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~   89 (265)
T 3qxz_A           12 EIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGA-PPAFCSGAQISAAAETFAAPRNPDFSA-SP   89 (265)
T ss_dssp             EEETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBCSTTCTTCCCCCCSSCCCS-CC
T ss_pred             EEECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCccccCcChHHHhhccchhHHHHHHH-HH
Confidence            4579999999999999999999999999999999999999999999999 799999999998865432211112222 55


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||+
T Consensus        90 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~--ltg~  167 (265)
T 3qxz_A           90 VQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELL--LTGA  167 (265)
T ss_dssp             SSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHHHH--HHCC
T ss_pred             HHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHH--HcCC
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCc
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      .++|       ++|+++|||+++++..+.
T Consensus       168 ~~~A-------~eA~~~GLv~~vv~~~~l  189 (265)
T 3qxz_A          168 SFSA-------QRAVETGLANRCLPAGKV  189 (265)
T ss_dssp             CBCH-------HHHHHHTSCSEEECHHHH
T ss_pred             CcCH-------HHHHHCCCccEeeCHHHH
Confidence            9999       999999999999976443

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=6e-43  Score=329.42  Aligned_cols=185  Identities=20%  Similarity=0.283  Sum_probs=156.3

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-------HHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-------DQIRS  115 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-------~~~~~  115 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.....       .....
T Consensus        16 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   94 (274)
T 3tlf_A           16 EVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGT-GRAFCSGADVKEIPEDGKVIYERPYLSTYD   94 (274)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBC--------------CTTCSGG
T ss_pred             EEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCC-CCCcccCcCHHHHhhccccccccchhhHHH
Confidence            3478999999999999999999999999999999999999999999999 699999999998865332       00011


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhh
Q psy504          116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALY  195 (358)
Q Consensus       116 ~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~l  195 (358)
                      .+..++.++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|++++|..+|++|
T Consensus        95 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~~~A~~l  173 (274)
T 3tlf_A           95 QWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLPRSIALRM  173 (274)
T ss_dssp             GGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhCHHHHHHH
Confidence            122334567788999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             hhhhccc--ccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          196 EDLLNND--CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       196 l~~ltg~--~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      +  |||+  +++|       ++|+++|||+++++..+......++
T Consensus       174 ~--ltg~~~~~~A-------~eA~~~GLv~~vv~~~~l~~~a~~~  209 (274)
T 3tlf_A          174 A--LMGKHERMSA-------QRAYELGLISEIVEHDRLLERAHEI  209 (274)
T ss_dssp             H--HHGGGCCEEH-------HHHHHHTSSSEEECGGGHHHHHHHH
T ss_pred             H--HcCCCCccCH-------HHHHHCCCCCeecCHHHHHHHHHHH
Confidence            9  9999  9999       9999999999999875544443333

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=3.9e-42  Score=323.67  Aligned_cols=185  Identities=28%  Similarity=0.355  Sum_probs=157.8

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCC-ceecCCCchhccccCHHHHHHH-HHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKD-VFCAGADLKHRLTLNEDQIRSF-VSTLR  121 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~-~FsaG~Dl~~~~~~~~~~~~~~-~~~~~  121 (358)
                      .+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |+ +||+|+|++++........... ....+
T Consensus        19 ~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~   97 (273)
T 2uzf_A           19 FYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGE-GDLAFCSGGDQKKRGHGGYVGEDQIPRLNVL   97 (273)
T ss_dssp             EETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSEEEECCCCCC--------CCSSSCCCTHH
T ss_pred             EECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecC-CCCceecCcCcHhhhccccchhhhHHHhhHH
Confidence            468999999999999999999999999999999999999999999999 66 9999999998753111000000 01145


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||
T Consensus        98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~--ltg  175 (273)
T 2uzf_A           98 DLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIW--YLC  175 (273)
T ss_dssp             HHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHHHHHHH--HTC
T ss_pred             HHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHHHHHHH--HhC
Confidence            677889999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      +.++|       ++|+++|||+++++..+.......+
T Consensus       176 ~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~  205 (273)
T 2uzf_A          176 RQYNA-------QEALDMGLVNTVVPLEKVEDETVQW  205 (273)
T ss_dssp             CCEEH-------HHHHHHTSSSEEECGGGSHHHHHHH
T ss_pred             CCCCH-------HHHHHcCCCccccCHHHHHHHHHHH
Confidence            99999       9999999999999765544443333

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=2.1e-43  Score=330.94  Aligned_cols=185  Identities=25%  Similarity=0.290  Sum_probs=159.7

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |+.||+|.|++++..........+.....+
T Consensus        14 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   92 (265)
T 3swx_A           14 RRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGE-GPLFTAGLDLASVAAEIQGGASLTPEGGIN   92 (265)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCHHHHHHHHC--CCCCCTTCCC
T ss_pred             EEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcChHHHhhcccchhHHHHHHHHH
Confidence            3479999999999999999999999999999999999999999999999 677999999998754211110011112233


Q ss_pred             HHHHH-HcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          123 MTCQL-ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       123 l~~~i-~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      ++.++ .++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  |||
T Consensus        93 ~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~--ltg  170 (265)
T 3swx_A           93 PWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWM--LTA  170 (265)
T ss_dssp             TTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHH--TTC
T ss_pred             HHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHHHHHH--HcC
Confidence            45667 899999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHH
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISA  237 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~  237 (358)
                      ++++|       ++|+++|||+++++..+.......
T Consensus       171 ~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~  199 (265)
T 3swx_A          171 DTFDA-------VEAHRIGIVQEIVPVGEHVDTAIA  199 (265)
T ss_dssp             CCEEH-------HHHHHTTSCSEEESTTCHHHHHHH
T ss_pred             CcCCH-------HHHHHcCCCCEecChhHHHHHHHH
Confidence            99999       999999999999987554443333

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=3.3e-42  Score=326.50  Aligned_cols=182  Identities=24%  Similarity=0.331  Sum_probs=161.7

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHH---HHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIR---SFVSTL  120 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~---~~~~~~  120 (358)
                      .+++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++.........   .+...+
T Consensus        14 ~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~   92 (289)
T 3h0u_A           14 LDGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASL   92 (289)
T ss_dssp             EETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSH
T ss_pred             EECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHH
Confidence            47999999999998 79999999999999999999999999999999955677788899987653222111   233456


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC-eEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      +.++.++.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..+|++|+  |
T Consensus        93 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ell--l  170 (289)
T 3h0u_A           93 GMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAV--L  170 (289)
T ss_dssp             HHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHH--H
T ss_pred             HHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHH--H
Confidence            78899999999999999999999999999999999999998 99999999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHH
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHI  235 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~  235 (358)
                      ||++++|       ++|+++|||+++++..+.....
T Consensus       171 tG~~i~A-------~eA~~~GLV~~vv~~~~l~~~a  199 (289)
T 3h0u_A          171 TSSDFDA-------DLAERYGWVNRAVPDAELDEFV  199 (289)
T ss_dssp             HCCCEEH-------HHHHHHTSSSEEECHHHHHHHH
T ss_pred             cCCCCCH-------HHHHHCCCccEecCHHHHHHHH
Confidence            9999999       9999999999999865443333

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=1.3e-42  Score=326.03  Aligned_cols=203  Identities=30%  Similarity=0.337  Sum_probs=164.6

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++.................
T Consensus        14 ~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   93 (267)
T 3r9t_A           14 ERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFA   93 (267)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGGGCGG
T ss_pred             EEECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHhHHHH
Confidence            34799999999999999999999999999999999999999999999994479999999998765322110000000001


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      .+ ...++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  |||+
T Consensus        94 ~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~--ltg~  170 (267)
T 3r9t_A           94 GY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLL--LTGE  170 (267)
T ss_dssp             GT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHHHHH--HHCC
T ss_pred             HH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHHHHH--HcCC
Confidence            11 22389999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHHHHh-hhccccccceeccc
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVW-NYNASIEMSYCGFS  255 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~-n~~~~~e~~~~gk~  255 (358)
                      +++|       ++|+++|||++|++..+.......+... ..+++......++.
T Consensus       171 ~i~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~  217 (267)
T 3r9t_A          171 PLSA-------AAARDWGLINEVVEAGSVLDAALALASAITVNAPLSVQASKRI  217 (267)
T ss_dssp             CEEH-------HHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             CCCH-------HHHHHCCCccEEcChhHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            9999       9999999999999876654444443332 23333344444444

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=2.7e-41  Score=314.78  Aligned_cols=184  Identities=24%  Similarity=0.363  Sum_probs=164.9

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++|+||||++.|+||.+|+.+|.++++.+++ +++|+|||||. |++||+|+|++++..............++.
T Consensus        12 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   89 (254)
T 3isa_A           12 ERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGA-GRNFSAGFDFTDYETQSEGDLLLRMVRIEM   89 (254)
T ss_dssp             EECSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEES-TTCSCCCBCCTTCTTSCHHHHHHHHHHHHH
T ss_pred             EEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECC-CCceeeCcChHHhhccCchhHHHHHHHHHH
Confidence            4589999999999999999999999999999999987 58999999999 799999999999877665554445556778


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|   ++++|++++|..+|++++  +||+
T Consensus        90 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~--ltg~  164 (254)
T 3isa_A           90 LLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSIL--GSAR  164 (254)
T ss_dssp             HHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHH--TTTC
T ss_pred             HHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHHH--HhCC
Confidence            89999999999999999999999999999999999999999999999999998   479999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHHHH
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIV  240 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~  240 (358)
                      +++|       ++|+++|||+++++..+.......+..
T Consensus       165 ~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~a~  195 (254)
T 3isa_A          165 AFDA-------DEARRIGFVRDCAAQAQWPALIDAAAE  195 (254)
T ss_dssp             EEEH-------HHHHHTTSSSEECCGGGHHHHHHHHHH
T ss_pred             CCcH-------HHHHHCCCccEEeChhHHHHHHHHHHH
Confidence            9999       999999999999987554444444433

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=2.9e-41  Score=322.43  Aligned_cols=188  Identities=23%  Similarity=0.291  Sum_probs=161.0

Q ss_pred             eeecCCEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHHHc-----CCCceEEEEeecCCCceecCCCchhccccC---
Q psy504           42 SPERPGIVELCMNRPQA----RNALNATLVEEILTAVEAIRG-----DEEVRCVLLRSLVKDVFCAGADLKHRLTLN---  109 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~----~Nal~~~m~~eL~~~l~~~~~-----d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~---  109 (358)
                      ++.+++|++||||||++    +|+||.+|+.+|.++++.++.     |+++|+|||||. |++||+|+|++++....   
T Consensus        36 ~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~~  114 (305)
T 3m6n_A           36 EEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASD-SDVFNLGGDLALFCQLIREG  114 (305)
T ss_dssp             EETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEES-SSSSBCCBCHHHHHHHHHHT
T ss_pred             EEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECC-CCCeecCcCHHHHHhccccc
Confidence            34589999999999998    559999999999999999987     589999999998 89999999999876432   


Q ss_pred             -HHHHHHHHHHHHHHHHHH---HcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCccccccccc
Q psy504          110 -EDQIRSFVSTLRYMTCQL---ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPR  185 (358)
Q Consensus       110 -~~~~~~~~~~~~~l~~~i---~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r  185 (358)
                       ......+...+...+..+   ..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus       115 ~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r  194 (305)
T 3m6n_A          115 DRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQ  194 (305)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccHHHHHHH
Confidence             122333444444445444   4689999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504          186 IVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI  239 (358)
Q Consensus       186 ~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~  239 (358)
                      ++|..+|++|+  |||++++|       ++|+++|||++|++..+.......+.
T Consensus       195 ~vG~~~A~~ll--ltG~~i~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a  239 (305)
T 3m6n_A          195 RISAHLAQKIM--LEGNLYSA-------EQLLGMGLVDRVVPRGQGVAAVEQVI  239 (305)
T ss_dssp             TSCHHHHHHHH--HHCCEEEH-------HHHHHHTSCSEEECTTCHHHHHHHHH
T ss_pred             HhcHHHHHHHH--HcCCCCCH-------HHHHHCCCCCEecChhHHHHHHHHHH
Confidence            99999999999  99999999       99999999999998765544444443

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=2.6e-42  Score=322.92  Aligned_cols=177  Identities=22%  Similarity=0.396  Sum_probs=157.3

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEee-cCCCceecCCCchhccccCHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS-LVKDVFCAGADLKHRLTLNEDQIRSFVSTLR  121 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg-~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~  121 (358)
                      +.+++|++|+||||+++|+||.+|+.+|.++++.++.|+ +|+||||| .|+++||+|.|++++....... ..+...++
T Consensus         9 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~   86 (261)
T 1ef8_A            9 VTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP-LSYDDPLR   86 (261)
T ss_dssp             EEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT-TCTTSHHH
T ss_pred             EEeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh-HHHHHHHH
Confidence            347899999999999999999999999999999999999 99999999 8339999999999875422111 11123456


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      +++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  +||
T Consensus        87 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~--ltg  164 (261)
T 1ef8_A           87 QITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELI--FTA  164 (261)
T ss_dssp             HHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHH--HHC
T ss_pred             HHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHHHHHHH--HcC
Confidence            788899999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCC
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      +.++|       ++|+++|||+++++..+
T Consensus       165 ~~~~a-------~eA~~~GLv~~vv~~~~  186 (261)
T 1ef8_A          165 SPITA-------QRALAVGILNHVVEVEE  186 (261)
T ss_dssp             CCEEH-------HHHHHTTSCSEEECHHH
T ss_pred             CccCH-------HHHHHCCCcccccCHHH
Confidence            99999       99999999999997543

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=7.4e-42  Score=319.64  Aligned_cols=178  Identities=34%  Similarity=0.466  Sum_probs=158.6

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT  124 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~  124 (358)
                      .++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++......  ..+...+...+
T Consensus        14 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~   90 (260)
T 1mj3_A           14 NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQ--DCYSGKFLSHW   90 (260)
T ss_dssp             GGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECC-SSEEECCBCHHHHTTCCHH--HHHHC--CCGG
T ss_pred             cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECC-CCCccCCcChHhhhcccch--HHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999 7999999999987643321  11222233346


Q ss_pred             HHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccc
Q psy504          125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCM  204 (358)
Q Consensus       125 ~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i  204 (358)
                      .++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  +||+++
T Consensus        91 ~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~--ltg~~~  168 (260)
T 1mj3_A           91 DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMV--LTGDRI  168 (260)
T ss_dssp             GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHH--HHCCCE
T ss_pred             HHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHH--HcCCcC
Confidence            678899999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             ccccccccchhhHhcCCceEEEecCCccHH
Q psy504          205 SSLDTRYMWCTPYRRGLVVTLVIKFSQPVH  234 (358)
Q Consensus       205 ~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~  234 (358)
                      +|       ++|+++|||+++++..+....
T Consensus       169 ~a-------~eA~~~GLv~~vv~~~~l~~~  191 (260)
T 1mj3_A          169 SA-------QDAKQAGLVSKIFPVETLVEE  191 (260)
T ss_dssp             EH-------HHHHHHTSCSEEECTTTHHHH
T ss_pred             CH-------HHHHHcCCccEEeChHHHHHH
Confidence            99       999999999999987554333

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=6.3e-41  Score=316.39  Aligned_cols=184  Identities=22%  Similarity=0.274  Sum_probs=155.6

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-----HHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-----DQIRSFV  117 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-----~~~~~~~  117 (358)
                      +.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.....     .......
T Consensus        25 ~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~  103 (279)
T 3t3w_A           25 DVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRAN-GKHFSAGHDLRGGGPVPDKLTLEFIYAHES  103 (279)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEC-SSCSBCCBCCC--------CCHHHHHHHHH
T ss_pred             EEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCceeeccChHhhhhcccccchHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999999 799999999998865321     1112233


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      ..+..++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+ |+.++.. +++++|..+|++++ 
T Consensus       104 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-~~~~~~~-~~~~vG~~~A~~ll-  180 (279)
T 3t3w_A          104 RRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHG-HTWELGPRKAKEIL-  180 (279)
T ss_dssp             HHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTC-SSCSSCC-HHHHHCHHHHHHHH-
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCC-CCchHHH-HHhhcCHHHHHHHH-
Confidence            45567888999999999999999999999999999999999999999999999999 5555544 39999999999999 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                       |||++++|       ++|+++|||+++++..+......++
T Consensus       181 -ltG~~i~A-------~eA~~~GLv~~vv~~~~l~~~a~~~  213 (279)
T 3t3w_A          181 -FTGRAMTA-------EEVAQTGMVNRVVPRDRLDAETRAL  213 (279)
T ss_dssp             -HHCCCEEH-------HHHHHHTSCSEEECGGGHHHHHHHH
T ss_pred             -HcCCccCH-------HHHHHCCCCcEeeChHHHHHHHHHH
Confidence             99999999       9999999999999875544443333

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=4.9e-42  Score=321.96  Aligned_cols=175  Identities=25%  Similarity=0.329  Sum_probs=157.1

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC--HHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQIRSFVSTLR  121 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~--~~~~~~~~~~~~  121 (358)
                      .+++|++||||||+++|+||.+|+.+|.++++.++.| ++|+|||||. |++||+|.|++++....  ......+...++
T Consensus        13 ~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   90 (267)
T 3hp0_A           13 FQASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGL-PEVFCFGADFQEIYQEMKRGRKQASSQEPLY   90 (267)
T ss_dssp             EETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECC-SSCSBCCBCHHHHHHTTTTTCCSCCCCHHHH
T ss_pred             EECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECC-CCceecCcCHHHHHhcccChHHHHHHHHHHH
Confidence            4799999999999999999999999999999999986 6999999999 79999999999876431  111122334566


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|..+|++|+  |||
T Consensus        91 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A~ell--ltg  167 (267)
T 3hp0_A           91 DLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQKAHYMT--LMT  167 (267)
T ss_dssp             HHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHHHHHHH--HHC
T ss_pred             HHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHHHHHHH--HcC
Confidence            788899999999999999999999999999999999999999999999999999875 67899999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCC
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      ++++|       ++|+++|||++++++.+
T Consensus       168 ~~i~A-------~eA~~~GLV~~vv~~~~  189 (267)
T 3hp0_A          168 KPISV-------QEASEWGLIDAFDAESD  189 (267)
T ss_dssp             CCBCH-------HHHHHHTSSSCBCSCTT
T ss_pred             CCCCH-------HHHHHCCCcceecCCHH
Confidence            99999       99999999999997543

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=7.2e-41  Score=330.78  Aligned_cols=182  Identities=21%  Similarity=0.354  Sum_probs=166.1

Q ss_pred             eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC-------HHHHH
Q psy504           42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-------EDQIR  114 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~-------~~~~~  114 (358)
                      ++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++....       .....
T Consensus        46 ~~~~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~  125 (407)
T 3ju1_A           46 TASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAK  125 (407)
T ss_dssp             CTTSCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHH
T ss_pred             EEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccccHHHHH
Confidence            44578999999999999999999999999999999999999999999999548999999999876431       12345


Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHh
Q psy504          115 SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAAL  194 (358)
Q Consensus       115 ~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~  194 (358)
                      .++...+.++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+|++
T Consensus       126 ~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g-~~A~~  204 (407)
T 3ju1_A          126 VFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLF  204 (407)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST-THHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH-HHHHH
Confidence            56667778999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hhhhhcccccccccccccchhhHhcCCceEEEecCCccH
Q psy504          195 YEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPV  233 (358)
Q Consensus       195 ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~  233 (358)
                      |+  |||++++|       .+|+++|||+++++..+...
T Consensus       205 l~--ltG~~i~A-------~eA~~~GLv~~vv~~~~l~~  234 (407)
T 3ju1_A          205 LG--LTAYHMNA-------ADACYVGLADHYLNRDDKEL  234 (407)
T ss_dssp             HH--HHCCCBCH-------HHHHHHTSCSEECCGGGHHH
T ss_pred             HH--HcCCcCcH-------HHHHHCCCccEEcCHHHHHH
Confidence            99  99999999       99999999999998755444

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=5e-41  Score=327.94  Aligned_cols=179  Identities=22%  Similarity=0.381  Sum_probs=161.0

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVST  119 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~  119 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++...   .......+...
T Consensus        11 ~~~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~   90 (363)
T 3bpt_A           11 GKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFRE   90 (363)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHH
T ss_pred             EEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHH
Confidence            347899999999999999999999999999999999999999999999955999999999987432   11112234455


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      .+.++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +|++|+  |
T Consensus        91 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~a~~l~--l  167 (363)
T 3bpt_A           91 EYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-LGYFLA--L  167 (363)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-HHHHHH--H
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-HHHHHH--H
Confidence            5678889999999999999999999999999999999999999999999999999999999999999997 999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCc
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      ||++++|       .+|+++|||+++++..+.
T Consensus       168 tg~~i~A-------~eA~~~GLv~~vv~~~~l  192 (363)
T 3bpt_A          168 TGFRLKG-------RDVYRAGIATHFVDSEKL  192 (363)
T ss_dssp             HCCCEET-------HHHHHTTSCSEECCGGGH
T ss_pred             cCCCCCH-------HHHHHCCCcceecCHHHH
Confidence            9999999       999999999999976543

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=8.5e-42  Score=319.61  Aligned_cols=169  Identities=26%  Similarity=0.466  Sum_probs=153.6

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++++++| ++|+|||||. |++||+|+|++....     ...+...++.
T Consensus        26 ~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~-G~~FcaG~Dl~~~~~-----~~~~~~~~~~   98 (264)
T 3he2_A           26 TQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQ-GTAFCAGADLSGDAF-----AADYPDRLIE   98 (264)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEES-SSCSBCCBCCTTCTT-----GGGHHHHHHH
T ss_pred             EEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECC-CCCccCCcCCccchh-----hHHHHHHHHH
Confidence            34799999999999999999999999999999999988 9999999999 799999999984211     1234456677


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  |||+
T Consensus        99 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~ll--ltG~  176 (264)
T 3he2_A           99 LHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAML--LSAE  176 (264)
T ss_dssp             HHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHHHH--HHCC
T ss_pred             HHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHHHH--HcCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEe
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVI  227 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~  227 (358)
                      +++|       ++|+++|||+++++
T Consensus       177 ~i~A-------~eA~~~GLV~~v~~  194 (264)
T 3he2_A          177 KLTA-------EIALHTGMANRIGT  194 (264)
T ss_dssp             CEEH-------HHHHHHTSCSEECC
T ss_pred             CccH-------HHHHHCCCeEEEec
Confidence            9999       99999999999975

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=6.1e-42  Score=321.04  Aligned_cols=181  Identities=29%  Similarity=0.420  Sum_probs=151.9

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..........     +.
T Consensus        20 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~-----~~   93 (265)
T 3qxi_A           20 EQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGA-GGSFCAGMDLKAFARGENVVVEG-----RG   93 (265)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCCCCSBC-------CCCEETT-----TE
T ss_pred             EEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCCeeCCCChhhhhccchhhhhh-----hh
Confidence            3479999999999999999999999999999999999999999999999 68999999999875432111000     01


Q ss_pred             H-HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          123 M-TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       123 l-~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      + +..+.. |||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+  |||
T Consensus        94 ~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--ltg  170 (265)
T 3qxi_A           94 LGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELA--LTG  170 (265)
T ss_dssp             ETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHHHHH--HHC
T ss_pred             hhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHHHHH--HcC
Confidence            1 223334 999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI  239 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~  239 (358)
                      ++++|       ++|+++|||+++++..+.......+.
T Consensus       171 ~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~a  201 (265)
T 3qxi_A          171 DNLSA-------ERAHALGMVNVLAEPGAALDAAIALA  201 (265)
T ss_dssp             CCEEH-------HHHHHTTSCSEEECTTCHHHHHHHHH
T ss_pred             CCcCH-------HHHHHCCCccEeeChhHHHHHHHHHH
Confidence            99999       99999999999998765544444443

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=8e-42  Score=318.69  Aligned_cols=180  Identities=26%  Similarity=0.431  Sum_probs=157.3

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..........   .+ .
T Consensus        12 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~---~~-~   86 (256)
T 3trr_A           12 EQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGA-GGNFCAGMDLKAFVSGEAVLSER---GL-G   86 (256)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEG-GGCCCCCBCHHHHHHTCCCEETT---EE-T
T ss_pred             EEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCceecCcCHHHhccccchhhhh---hh-h
Confidence            4579999999999999999999999999999999999999999999999 68999999999875422111000   00 1


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                       +..+ .+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++  |||+
T Consensus        87 -~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~--ltg~  162 (256)
T 3trr_A           87 -FTNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELA--LTGE  162 (256)
T ss_dssp             -TSSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHHHH--HHCC
T ss_pred             -HHHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHHHH--HhCC
Confidence             2234 89999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      +++|       ++|+++|||+++++..+......++
T Consensus       163 ~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~  191 (256)
T 3trr_A          163 SFTA-------EDAAKYGFINRLVDDGQALDTALEL  191 (256)
T ss_dssp             CEEH-------HHHGGGTCCSEEECTTCHHHHHHHH
T ss_pred             CcCH-------HHHHHCCCeeEecChHHHHHHHHHH
Confidence            9999       9999999999999876644444443

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=7.2e-39  Score=336.77  Aligned_cols=171  Identities=31%  Similarity=0.535  Sum_probs=159.4

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +.+|+|++||||||+ .|+||.+|+.+|.+++++++.|++||+|||||. |+.||+|+|++++.......      .+.+
T Consensus        26 ~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aGaDl~~~~~~~~~~------~~~~   97 (742)
T 3zwc_A           26 RLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGA-NGNFCAGADIHGFSAFTPGL------ALGS   97 (742)
T ss_dssp             ECSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCSSSCCSSCSCS------HHHH
T ss_pred             EeeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECC-CCccccCcChHhhhccChhH------HHHH
Confidence            457999999999997 699999999999999999999999999999999 79999999999987654432      2456


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++.++.+++||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+  |||+
T Consensus        98 ~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~--ltG~  175 (742)
T 3zwc_A           98 LVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLI--TSGK  175 (742)
T ss_dssp             HHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHH--HHCC
T ss_pred             HHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHH--HcCC
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCC
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      +++|       ++|+++|||++|++...
T Consensus       176 ~i~a-------~eA~~~GLv~~vv~~d~  196 (742)
T 3zwc_A          176 YLSA-------DEALRLGILDAVVKSDP  196 (742)
T ss_dssp             CEEH-------HHHHHHTSCSEEESSCH
T ss_pred             chhH-------HHHHHcCCccEecCchh
Confidence            9999       99999999999997643

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=1.7e-38  Score=318.01  Aligned_cols=177  Identities=25%  Similarity=0.317  Sum_probs=162.8

Q ss_pred             ecCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHHcC-CCceEEEEee-cCCCceecCCCchhccccCHH
Q psy504           44 ERPGIVELCMNRPQ----------ARNALNATLVEEILTAVEAIRGD-EEVRCVLLRS-LVKDVFCAGADLKHRLTLNED  111 (358)
Q Consensus        44 ~~~~V~~Itlnrp~----------~~Nal~~~m~~eL~~~l~~~~~d-~~vrvVVltg-~gg~~FsaG~Dl~~~~~~~~~  111 (358)
                      .+++|++|+||||+          ++|+||.+|+.+|.++++.++.| +++|+||||| . |++||+|+|++++......
T Consensus        27 ~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~-G~~FcAGaDL~el~~~~~~  105 (556)
T 2w3p_A           27 FNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLK-DRVFCSGANIFMLGLSTHA  105 (556)
T ss_dssp             EETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SSEEECEECHHHHHHSCHH
T ss_pred             eeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCC-CCcccCCcCHHHHhhcccH
Confidence            47899999999998          89999999999999999999999 9999999999 6 8999999999998765443


Q ss_pred             HHHHHHHHHHHHHHHH----HcCCCcEEEeeccccccCCceeeccccEEEEcCC--eEEeeccee-cccccCcccccccc
Q psy504          112 QIRSFVSTLRYMTCQL----ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETK-LAIIPGAGGTQRLP  184 (358)
Q Consensus       112 ~~~~~~~~~~~l~~~i----~~~~kPvIaavnG~a~GgG~~lal~cD~riase~--a~f~~pe~~-lGl~p~~g~s~~L~  184 (358)
                      ....+.+.+++++.++    .++|||+||+|||+|+|||++|+++||+|||+++  ++|++||++ +|++|++|++++|+
T Consensus       106 ~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~rLp  185 (556)
T 2w3p_A          106 WKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVT  185 (556)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCCCccHHHHHH
Confidence            3344555667788888    9999999999999999999999999999999999  999999999 99999999999999


Q ss_pred             --cccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          185 --RIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       185 --r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                        |++|..+|++++  ++|+.++|       ++|+++|||+++++..+
T Consensus       186 ~~RlVG~~rA~eLl--LTGr~isA-------~EAl~lGLVdeVVp~~e  224 (556)
T 2w3p_A          186 DKRKVRHDRADIFC--TVVEGVRG-------ERAKAWRLVDEVVKPNQ  224 (556)
T ss_dssp             HTSCCCHHHHHHHT--TCSSCEEH-------HHHHHTTSCSEEECHHH
T ss_pred             hhccCCHHHHHHHH--HcCCCCCH-------HHHHHCCCceEEeChhH
Confidence              999999999999  99999999       99999999999997543

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=6.2e-39  Score=317.76  Aligned_cols=178  Identities=31%  Similarity=0.335  Sum_probs=154.0

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeec--------CCCceecCCCchhccccCH--HH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL--------VKDVFCAGADLKHRLTLNE--DQ  112 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~--------gg~~FsaG~Dl~~~~~~~~--~~  112 (358)
                      +.+++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.        |+++||+|+|++++.....  ..
T Consensus       172 e~~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~~~~~  251 (440)
T 2np9_A          172 ERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVD  251 (440)
T ss_dssp             EEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTT
T ss_pred             EEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCcchhh
Confidence            3478999999999999999999999999999999999999999999994        3489999999998754221  11


Q ss_pred             --HHHHHHHHHHHHHHH------------HcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcc
Q psy504          113 --IRSFVSTLRYMTCQL------------ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAG  178 (358)
Q Consensus       113 --~~~~~~~~~~l~~~i------------~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g  178 (358)
                        .......++.++..+            ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|
T Consensus       252 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~~g  331 (440)
T 2np9_A          252 FLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAA  331 (440)
T ss_dssp             THHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTH
T ss_pred             hhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcchH
Confidence              111112234444443            479999999999999999999999999999999999999999999999887


Q ss_pred             cccccccccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          179 GTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       179 ~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                       +++|++++|..+|++|+  |||+.++|       ++|+++|||++|++..+
T Consensus       332 -~~~L~rlvG~~~A~ell--LtG~~i~A-------~EA~~~GLV~~Vvp~~e  373 (440)
T 2np9_A          332 -NLRLGRFAGPRVSRQVI--LEGRRIWA-------KEPEARLLVDEVVEPDE  373 (440)
T ss_dssp             -HHHHHHHHHHHHHHHHH--HHCCCEET-------TSGGGGGTCSEEECHHH
T ss_pred             -HHHHHHHhhHHHHHHHH--HcCCCCCH-------HHHHHCCCCcEecChHH
Confidence             68999999999999999  99999999       99999999999997643

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=4.7e-37  Score=323.47  Aligned_cols=177  Identities=34%  Similarity=0.491  Sum_probs=162.2

Q ss_pred             ecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVST  119 (358)
Q Consensus        44 ~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~  119 (358)
                      .+++|++||||||+ +.|+||.+|+.+|.+++++++.|+++|+||||| |++.||+|+|++++...   ..+....+...
T Consensus        13 ~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   91 (715)
T 1wdk_A           13 LESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDAELIAGNLE   91 (715)
T ss_dssp             CGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred             eeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHHHHHHHHHH
Confidence            46899999999998 899999999999999999999999999999999 56699999999988542   22233445566


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      +++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+  +
T Consensus        92 ~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~A~~l~--l  169 (715)
T 1wdk_A           92 ANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWI--A  169 (715)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHH--H
T ss_pred             HHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHHHHHHH--H
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCC
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      ||++++|       ++|+++|||+++++..+
T Consensus       170 tG~~~~a-------~eA~~~GLv~~vv~~~~  193 (715)
T 1wdk_A          170 SGKENRA-------EDALKVSAVDAVVTADK  193 (715)
T ss_dssp             HCCCEEH-------HHHHHTTSSSEEECGGG
T ss_pred             cCCCCCH-------HHHHHCCCceEEeChHH
Confidence            9999999       99999999999997543

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=8.4e-37  Score=321.86  Aligned_cols=177  Identities=28%  Similarity=0.458  Sum_probs=153.6

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH---HHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ---IRSFVSTL  120 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~---~~~~~~~~  120 (358)
                      .+++|++|||||| +.|+||.+|+.+|.+++++++.|+++|+||||| |++.||+|+|++++.......   ...+...+
T Consensus        14 ~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   91 (725)
T 2wtb_A           14 GGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVKEPKAGYISI   91 (725)
T ss_dssp             CTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------CCSSSHHHH
T ss_pred             eeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhhhHHHHHHHH
Confidence            4789999999999 799999999999999999999999999999999 566999999999875422110   01223445


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN  200 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt  200 (358)
                      ++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+  +|
T Consensus        92 ~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A~~l~--lt  169 (725)
T 2wtb_A           92 DIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMI--LT  169 (725)
T ss_dssp             HCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHH--HH
T ss_pred             HHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHHHHHHH--Hc
Confidence            6667788999999999999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             ccccccccccccchhhHhcCCceEEEecCCc
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      |++++|       ++|+++|||+++++..+.
T Consensus       170 G~~~~a-------~eA~~~GLv~~vv~~~~l  193 (725)
T 2wtb_A          170 SKPVKA-------EEGHSLGLIDAVVPPAEL  193 (725)
T ss_dssp             CCCEEH-------HHHHHHTSCSEECCTTTH
T ss_pred             CCCCCH-------HHHHHCCccceEcChhHH
Confidence            999999       999999999999976443

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.81  E-value=7.9e-21  Score=196.11  Aligned_cols=157  Identities=15%  Similarity=0.147  Sum_probs=135.5

Q ss_pred             cCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNA--LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Na--l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      +++|++|++|+|...|+  ++..+.++|.++|+.++.|+++|+|||++.     |.|+|+...            ..+++
T Consensus       300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~-----spGG~~~~~------------~~i~~  362 (593)
T 3bf0_A          300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVN-----SPGGSVTAS------------EVIRA  362 (593)
T ss_dssp             SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEE-----EEEECHHHH------------HHHHH
T ss_pred             CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEec-----CCCCCHHHH------------HHHHH
Confidence            57899999999988888  688999999999999999999999999998     357787541            23455


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecce------------ecccccCc-------------
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVET------------KLAIIPGA-------------  177 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~------------~lGl~p~~-------------  177 (358)
                      .+.++..++|||||+|+|.|.|||+.|+++||+++|++++.|+.+++            ++|+.|+.             
T Consensus       363 ~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~  442 (593)
T 3bf0_A          363 ELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITR  442 (593)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTS
T ss_pred             HHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcCC
Confidence            66778889999999999999999999999999999999999999875            58887643             


Q ss_pred             ccc---------------cccccccchhh-----HHhhhhhhcccccccccccccchhhHhcCCceEEEe
Q psy504          178 GGT---------------QRLPRIVGIPL-----AALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVI  227 (358)
Q Consensus       178 g~s---------------~~L~r~iG~~~-----A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~  227 (358)
                      +.+               .+|.+.++..+     +.+++  ++|+.++|       ++|+++|||++++.
T Consensus       443 ~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l--~~G~~~ta-------~eA~~~GLVD~v~~  503 (593)
T 3bf0_A          443 ALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKI--AQGHVWTG-------QDAKANGLVDSLGD  503 (593)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTT--CTTCEEEH-------HHHHHHTSCSEECC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH--hcCCCcCH-------HHHHHCCCCcCccC
Confidence            223               46778888888     88888  99999999       99999999999984

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.73  E-value=5e-18  Score=156.34  Aligned_cols=156  Identities=14%  Similarity=0.128  Sum_probs=119.2

Q ss_pred             cCCEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNAT-------LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV  117 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~-------m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~  117 (358)
                      +++|++|.++.+=..+.-...       .+.+|.++|+.+..|+++|+|||++.     |.|+|+...            
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~-----s~Gg~~~~~------------   64 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN-----SPGGGVYES------------   64 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE-----ECCBCHHHH------------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec-----CCCCCHHHH------------
Confidence            467999999876432210111       36899999999999999999999997     578888642            


Q ss_pred             HHHHHHHHHHHc-CCCcEEEeeccccccCCceeeccccEEEEcCCeEEeec---------------------ceeccccc
Q psy504          118 STLRYMTCQLES-IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV---------------------ETKLAIIP  175 (358)
Q Consensus       118 ~~~~~l~~~i~~-~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~p---------------------e~~lGl~p  175 (358)
                      ..+++.+.++.. ++||+||+++|.|.|||+.|+++||++||++++.|+.+                     +.+.|-.+
T Consensus        65 ~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k  144 (240)
T 3rst_A           65 AEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHA  144 (240)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTT
T ss_pred             HHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEeccccc
Confidence            234555666777 89999999999999999999999999999999999999                     66677767


Q ss_pred             Cccccc--------------------------ccccccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEe
Q psy504          176 GAGGTQ--------------------------RLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVI  227 (358)
Q Consensus       176 ~~g~s~--------------------------~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~  227 (358)
                      ..+..+                          .-.|.+......+ +  ++|+.+++       ++|++.|||+++..
T Consensus       145 ~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~--~~g~~~~a-------~~A~~~GLVD~i~~  212 (240)
T 3rst_A          145 DIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-I--ADGRVYDG-------RQAKKLNLVDELGF  212 (240)
T ss_dssp             TTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-H--CSSCEEEH-------HHHHHTTSSSEECC
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-H--hcCCcccH-------HHHHHcCCCcccCC
Confidence            665432                          1123344444444 3  78999999       99999999999874

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.73  E-value=1.1e-17  Score=152.63  Aligned_cols=148  Identities=11%  Similarity=0.196  Sum_probs=125.6

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT  124 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~  124 (358)
                      .+.|++|+++     ++++.++.+.|.++++.++++ ++++|||+..     |.|+++..               ...++
T Consensus         7 ~~~V~vI~i~-----g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in-----spGG~v~~---------------~~~i~   60 (230)
T 3viv_A            7 KNIVYVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADA---------------MMNIV   60 (230)
T ss_dssp             CCEEEEEEEE-----SCBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE-----BSCEEHHH---------------HHHHH
T ss_pred             CCeEEEEEEe-----CEECHHHHHHHHHHHHHHhcC-CCCEEEEEEe-----CCCcCHHH---------------HHHHH
Confidence            4669999998     479999999999999999864 6999999986     66877643               24567


Q ss_pred             HHHHcCCCcEEEee---ccccccCCceeeccccEEEEcCCeEEeecceecccccCccccc---------------ccccc
Q psy504          125 CQLESIPVPVLAVL---DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQ---------------RLPRI  186 (358)
Q Consensus       125 ~~i~~~~kPvIaav---nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~---------------~L~r~  186 (358)
                      ..+..++||+|++|   +|.|.|+|+.|+++||+++++++++|+.++...+. |..|.+.               .+++.
T Consensus        61 ~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~~  139 (230)
T 3viv_A           61 QRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQE  139 (230)
T ss_dssp             HHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            77889999999999   99999999999999999999999999999987643 5555532               36677


Q ss_pred             cch--hhHHhhhhhhcccccccccccccchhhHhcCCceEEEec
Q psy504          187 VGI--PLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       187 iG~--~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                      .|.  ..+.+++  .+++.++|       +||+++|||++|+.+
T Consensus       140 ~Gr~~~~a~~~~--~~~~~ltA-------~EAle~GliD~V~~~  174 (230)
T 3viv_A          140 SGRNATIAEEFI--TKDLSLTP-------EEALKYGVIEVVARD  174 (230)
T ss_dssp             TTCCHHHHHHHH--HTCCEECH-------HHHHHTTSCSEECSS
T ss_pred             hCcCHHHHHHHH--hcCCeecH-------HHHHHcCCceEecCC
Confidence            886  7888998  89999999       999999999999854

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.40  E-value=2e-13  Score=123.75  Aligned_cols=138  Identities=12%  Similarity=0.115  Sum_probs=107.7

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504           62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS  141 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~  141 (358)
                      ++.++.+++.+.|..++.|+.++.|+|.-.     |.|+++..               ...++..+..+++|+++.++|.
T Consensus        54 I~~~~a~~i~~~L~~l~~~~~~k~I~l~In-----SPGG~v~a---------------g~~I~~~i~~~~~pV~t~v~G~  113 (218)
T 1y7o_A           54 VEDNMANSVIAQLLFLDAQDSTKDIYLYVN-----TPGGSVSA---------------GLAIVDTMNFIKADVQTIVMGM  113 (218)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEEEEEE-----ECCBCHHH---------------HHHHHHHHHHSSSCEEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CcCCCHHH---------------HHHHHHHHHhcCCCEEEEEccE
Confidence            788999999999999998877788777653     44555432               2335667788899999999999


Q ss_pred             cccCCceeeccccE--EEEcCCeEEeecceecccccCcccc------------------cccccccchh--hHHhhhhhh
Q psy504          142 AYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGT------------------QRLPRIVGIP--LAALYEDLL  199 (358)
Q Consensus       142 a~GgG~~lal~cD~--riase~a~f~~pe~~lGl~p~~g~s------------------~~L~r~iG~~--~A~~ll~~l  199 (358)
                      |.++|+.|+++||.  |+|.+++.|++.+.. |..+..|..                  ..+++..|..  .+.+++  .
T Consensus       114 AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~--~  190 (218)
T 1y7o_A          114 AASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADA--E  190 (218)
T ss_dssp             EETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH--H
T ss_pred             eHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH--h
Confidence            99999999999999  999999999999887 434433332                  4577777774  777887  7


Q ss_pred             cccccccccccccchhhHhcCCceEEEecC
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKF  229 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~  229 (358)
                      +|+.++|       +||+++|||++|+...
T Consensus       191 ~~~~~ta-------~EA~e~GLVD~v~~~~  213 (218)
T 1y7o_A          191 RDNWMSA-------QETLEYGFIDEIMANN  213 (218)
T ss_dssp             SCCCBCH-------HHHHHHTSCSEECCCC
T ss_pred             CCCEEcH-------HHHHHCCCCcEEcCcC
Confidence            8999999       9999999999998653

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.37  E-value=6e-13  Score=126.18  Aligned_cols=140  Identities=18%  Similarity=0.270  Sum_probs=110.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |+++..+..-..|+++..+.+.+.++++.+.++ .+.+|+|+++ |     |+|+.+...       . ...+.+++.++
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~s-G-----Garlqeg~~-------~-l~~~~~i~~al  184 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSAS-G-----GARMQEALM-------S-LMQMAKTSAAL  184 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEE-S-----SBCGGGTHH-------H-HHHHHHHHHHH
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECC-C-----CcCHHHHHH-------H-HHHHHHHHHHH
Confidence            666667666678999999999999999999988 8999999998 4     888865321       1 13344555555


Q ss_pred             H---cCCCcEEEeeccccccCC-ceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504          128 E---SIPVPVLAVLDGSAYGGG-LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC  203 (358)
Q Consensus       128 ~---~~~kPvIaavnG~a~GgG-~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~  203 (358)
                      .   ..++|+|++|+|+|.||| +.++++||+++|.++|+|++.           +...+++.+|..        ++++.
T Consensus       185 ~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~--------l~~~~  245 (304)
T 2f9y_B          185 AKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK--------LPPGF  245 (304)
T ss_dssp             HHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC--------CCTTT
T ss_pred             HHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc--------CCccc
Confidence            4   459999999999999999 788999999999999999987           344556666642        34666


Q ss_pred             cccccccccchhhHhcCCceEEEec
Q psy504          204 MSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       204 i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                      .+|       +++.+.|+|+.|++.
T Consensus       246 ~~A-------e~~~~~Glvd~Vv~~  263 (304)
T 2f9y_B          246 QRS-------EFLIEKGAIDMIVRR  263 (304)
T ss_dssp             TBH-------HHHGGGTCCSEECCH
T ss_pred             CCH-------HHHHhcCCccEEeCc
Confidence            667       888999999999865

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.27  E-value=1.2e-11  Score=118.29  Aligned_cols=158  Identities=11%  Similarity=0.023  Sum_probs=113.4

Q ss_pred             EeeeecCCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH
Q psy504           40 HNSPERPGIVELCMNRPQ---------ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE  110 (358)
Q Consensus        40 ~l~~~~~~V~~Itlnrp~---------~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~  110 (358)
                      -+-+.+|.-..|.-|++.         ..++++.+......++++.+++..-. +|.|.-++|...  |.+..       
T Consensus       110 G~gri~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~~P-lI~lvdt~Ga~~--g~~ae-------  179 (327)
T 2f9i_A          110 GIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRP-IFTFIDTKGAYP--GKAAE-------  179 (327)
T ss_dssp             EEEEETTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCC-EEEEEEESCSCC--CHHHH-------
T ss_pred             EEEEECCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCC-EEEEEeCCCCCc--chhhh-------
Confidence            334445655555566654         34789999999999999999876544 555544423322  22211       


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchh
Q psy504          111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIP  190 (358)
Q Consensus       111 ~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~  190 (358)
                        .........+++.++..+++|+|++|+|.|.|||+.++++||++||+++++|++      +.|.++++.++.+..+..
T Consensus       180 --~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~  251 (327)
T 2f9i_A          180 --ERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAK  251 (327)
T ss_dssp             --HTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHH
T ss_pred             --hhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchH
Confidence              112344556678889999999999999999999999999999999999999986      356666665555544446


Q ss_pred             hHHhhhhhhcccccccccccccchhhHhcCCceEEEec
Q psy504          191 LAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       191 ~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                      .|.++      +.++|       .++++.|+|++|++.
T Consensus       252 ~A~e~------~~itA-------~~a~~~GlVd~VV~e  276 (327)
T 2f9i_A          252 IAAET------MKITA-------HDIKQLGIIDDVISE  276 (327)
T ss_dssp             HHHHH------HTCBH-------HHHHHTTSSSEEECC
T ss_pred             HHHHH------cCCCH-------HHHHHcCCceEEecC
Confidence            66655      35777       899999999999974

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.23  E-value=2.1e-11  Score=117.02  Aligned_cols=139  Identities=12%  Similarity=0.019  Sum_probs=107.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        59 ~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      .++++++......++++.+++..- =+|.|.-++|...  |....         .........+++.++..+++|+|++|
T Consensus       152 ~G~~~~~~~~Ka~r~~~~A~~~~l-PlI~lvDt~Ga~~--g~~aE---------~~g~~~~~a~~l~al~~~~vPvIavV  219 (339)
T 2f9y_A          152 FGMPAPEGYRKALRLMQMAERFKM-PIITFIDTPGAYP--GVGAE---------ERGQSEAIARNLREMSRLGVPVVCTV  219 (339)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHTTC-CEEEEEEESCSCC--SHHHH---------HTTHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhhcCC-CEEEEEeCCCCcc--chHHH---------HHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            468999999999999999987654 4555544423222  22211         11234456677888999999999999


Q ss_pred             ccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHh
Q psy504          139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR  218 (358)
Q Consensus       139 nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~  218 (358)
                      +|.|.|||+.++++||++||.++++|++      +.|.++++.++.+..+...|.++.      .+++       .++++
T Consensus       220 ~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~~------~itA-------~~a~~  280 (339)
T 2f9y_A          220 IGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEAM------GIIR-------PRLKE  280 (339)
T ss_dssp             EEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHHH------TCSH-------HHHHT
T ss_pred             eCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHHc------CCCH-------HHHHH
Confidence            9999999999999999999999999997      467778888887777777777663      5777       89999


Q ss_pred             cCCceEEEec
Q psy504          219 RGLVVTLVIK  228 (358)
Q Consensus       219 ~GLv~~vv~~  228 (358)
                      +|+|++|++.
T Consensus       281 ~GlVd~VV~e  290 (339)
T 2f9y_A          281 LKLIDSIIPE  290 (339)
T ss_dssp             TTSCSCCCCC
T ss_pred             cCCeeEEecC
Confidence            9999999974

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.64  E-value=2.5e-08  Score=89.51  Aligned_cols=135  Identities=12%  Similarity=0.155  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504           62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS  141 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~  141 (358)
                      ++..+.+.+.+.|..++.++.++.|+|.=.     |.|+++.               ....+...+..+++|+++.+.|.
T Consensus        36 I~~~~a~~i~~~L~~~~~~~~~k~I~l~In-----SPGG~v~---------------a~~~I~~~i~~~~~pV~~~v~g~   95 (208)
T 2cby_A           36 VNDEIANRLCAQILLLAAEDASKDISLYIN-----SPGGSIS---------------AGMAIYDTMVLAPCDIATYAMGM   95 (208)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHH---------------HHHHHHHHHHHCSSCEEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCCCEEEEEE-----CCCCCHH---------------HHHHHHHHHHhcCCCEEEEECcE
Confidence            678899999999999987776776666543     3344432               13445667788899999999999


Q ss_pred             cccCCceeeccccE--EEEcCCeEEeecceecccccCcccc------------------cccccccchhh--HHhhhhhh
Q psy504          142 AYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGT------------------QRLPRIVGIPL--AALYEDLL  199 (358)
Q Consensus       142 a~GgG~~lal~cD~--riase~a~f~~pe~~lGl~p~~g~s------------------~~L~r~iG~~~--A~~ll~~l  199 (358)
                      |.++|..++++||.  |++.+++.++.....-|.   .|..                  ..+.+..|...  ..+++  -
T Consensus        96 AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~--~  170 (208)
T 2cby_A           96 AASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS--D  170 (208)
T ss_dssp             EETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH--H
T ss_pred             eHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH--h
Confidence            99999999999998  999999999887654221   1110                  11333334332  34444  6


Q ss_pred             cccccccccccccchhhHhcCCceEEEec
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIK  228 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~  228 (358)
                      .|+.+++       ++|++.|||+++...
T Consensus       171 ~~~~~ta-------~eA~e~GLvD~i~~~  192 (208)
T 2cby_A          171 RDRWFTA-------AEALEYGFVDHIITR  192 (208)
T ss_dssp             TTCEEEH-------HHHHHHTSCSEECSC
T ss_pred             CCcEEcH-------HHHHHcCCCcEecCc
Confidence            7778888       999999999999854

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.09  E-value=3.5e-06  Score=74.47  Aligned_cols=89  Identities=13%  Similarity=0.098  Sum_probs=70.6

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504           62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS  141 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~  141 (358)
                      ++..+.+.+.+.|..++.++..+.|+|.=.     |-|+++.               ....+...+..+++|+++.+.|.
T Consensus        35 I~~~~a~~i~~~L~~l~~~~~~~~I~l~In-----SPGG~v~---------------a~~~I~~~i~~~~~pV~~~v~g~   94 (193)
T 1yg6_A           35 VEDHMANLIVAQMLFLEAENPEKDIYLYIN-----SPGGVIT---------------AGMSIYDTMQFIKPDVSTICMGQ   94 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHH---------------HHHHHHHHHHHSSSCEEEEEEEE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CcCCCHH---------------HHHHHHHHHHhcCCCEEEEEeee
Confidence            788899999999999987776777777654     3354442               23345667778899999999999


Q ss_pred             cccCCceeeccccE--EEEcCCeEEeeccee
Q psy504          142 AYGGGLEMALACDI--RVAASNVRMGLVETK  170 (358)
Q Consensus       142 a~GgG~~lal~cD~--riase~a~f~~pe~~  170 (358)
                      |..+|.-++++||.  |++.+++.++.-...
T Consensus        95 AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~  125 (193)
T 1yg6_A           95 AASMGAFLLTAGAKGKRFCLPNSRVMIHQPL  125 (193)
T ss_dssp             EETHHHHHHHTSCTTCEEECTTCEEEECCCE
T ss_pred             HHHHHHHHHHCCCcCcEEEecCcEEEEEecc
Confidence            99999999999998  999999998775443

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.04  E-value=5.6e-06  Score=74.44  Aligned_cols=87  Identities=9%  Similarity=0.066  Sum_probs=67.7

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504           62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS  141 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~  141 (358)
                      ++..+...+.+.|..++.++. +.|+|.=.     |-|+++.               ....+...+..+++|+++.+.|.
T Consensus        48 I~~~~a~~i~~~L~~l~~~~~-k~I~l~IN-----SPGGsv~---------------a~~~I~~~i~~~~~pV~t~v~g~  106 (215)
T 2f6i_A           48 INKKTADELISQLLYLDNINH-NDIKIYIN-----SPGGSIN---------------EGLAILDIFNYIKSDIQTISFGL  106 (215)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCC-SCEEEEEE-----ECCBCHH---------------HHHHHHHHHHHSSSCEEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCC-CcEEEEEE-----CCCCCHH---------------HHHHHHHHHHhcCCCEEEEEeeE
Confidence            678889999999998876655 66666543     3344432               23345667778899999999999


Q ss_pred             cccCCceeeccccE--EEEcCCeEEeecce
Q psy504          142 AYGGGLEMALACDI--RVAASNVRMGLVET  169 (358)
Q Consensus       142 a~GgG~~lal~cD~--riase~a~f~~pe~  169 (358)
                      |..+|.-++++||.  |++.+++.+++...
T Consensus       107 AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p  136 (215)
T 2f6i_A          107 VASMASVILASGKKGKRKSLPNCRIMIHQP  136 (215)
T ss_dssp             ECHHHHHHHHTSCTTCEEECTTCEEESSCT
T ss_pred             hHhHHHHHHHcCCcccEEEcCCCEEEEecc
Confidence            99999999999999  99999999876543

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=97.96  E-value=1.5e-05  Score=70.93  Aligned_cols=89  Identities=13%  Similarity=0.132  Sum_probs=69.8

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecc
Q psy504           61 ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDG  140 (358)
Q Consensus        61 al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG  140 (358)
                      .++..+.+.+.+.|..++.++..+.|+|.=.     |.|+++.               ....+...+..+++|+++.+.|
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In-----SPGG~v~---------------~~~~I~~~i~~~~~~V~t~~~G   94 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYIN-----SPGGSVT---------------AGFAIYDTIQHIKPDVQTICIG   94 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHH---------------HHHHHHHHHHHSSSCEEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEe-----CCCCCHH---------------HHHHHHHHHHHhcCCcEEEEee
Confidence            3788999999999999987766666655443     3344432               2334566777889999999999


Q ss_pred             ccccCCceeecccc--EEEEcCCeEEeecce
Q psy504          141 SAYGGGLEMALACD--IRVAASNVRMGLVET  169 (358)
Q Consensus       141 ~a~GgG~~lal~cD--~riase~a~f~~pe~  169 (358)
                      .|.++|.-++++||  .|++.+++.|.+-..
T Consensus        95 ~AaSag~~i~~ag~~g~r~~~p~a~imiHqP  125 (203)
T 3qwd_A           95 MAASMGSFLLAAGAKGKRFALPNAEVMIHQP  125 (203)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEECCCC
T ss_pred             eehhHHHHHHHcCCcCeEEEcCCceEEEecc
Confidence            99999999999999  699999999887544

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=97.83  E-value=1.7e-05  Score=73.76  Aligned_cols=95  Identities=13%  Similarity=0.161  Sum_probs=71.7

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHc
Q psy504           50 ELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLES  129 (358)
Q Consensus        50 ~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~  129 (358)
                      +|.++.+     ++.++.+.+.+.|..++.++..+.|+|.=.     |-|+++.               ....++..+..
T Consensus        84 II~l~G~-----I~d~~a~~iiaqL~~l~~ed~~k~I~L~IN-----SPGGsV~---------------ag~aIyd~I~~  138 (277)
T 1tg6_A           84 IVCVMGP-----IDDSVASLVIAQLLFLQSESNKKPIHMYIN-----SPGGVVT---------------AGLAIYDTMQY  138 (277)
T ss_dssp             EEEEESS-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHH---------------HHHHHHHHHHH
T ss_pred             EEEEcCE-----ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCHH---------------HHHHHHHHHHh
Confidence            4555543     788899999999998876555677776554     3344442               22345666778


Q ss_pred             CCCcEEEeeccccccCCceeeccccE--EEEcCCeEEeecce
Q psy504          130 IPVPVLAVLDGSAYGGGLEMALACDI--RVAASNVRMGLVET  169 (358)
Q Consensus       130 ~~kPvIaavnG~a~GgG~~lal~cD~--riase~a~f~~pe~  169 (358)
                      .++|+++.+.|.|..+|.-++++||.  |++.+++.++.-..
T Consensus       139 ~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP  180 (277)
T 1tg6_A          139 ILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQP  180 (277)
T ss_dssp             SCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCC
T ss_pred             cCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecc
Confidence            88999999999999999999999998  99999998876543

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=97.82  E-value=1.5e-05  Score=70.90  Aligned_cols=89  Identities=9%  Similarity=0.032  Sum_probs=69.8

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504           62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS  141 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~  141 (358)
                      ++.++.+.+.+.|..++.++..+.|+|.=.     |.|+++.               ....+...+..+++|+++.+.|.
T Consensus        39 I~~~~a~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~---------------~~~~I~~~i~~~~~~v~t~~~G~   98 (201)
T 3p2l_A           39 VNDHSANLVIAQLLFLESEDPDKDIYFYIN-----SPGGMVT---------------AGMGVYDTMQFIKPDVSTICIGL   98 (201)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHH---------------HHHHHHHHHHHSSSCEEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCHH---------------HHHHHHHHHHHhCCCeEEEEcCE
Confidence            788999999999999987766666666544     3344442               23345667778899999999999


Q ss_pred             cccCCceeeccccE--EEEcCCeEEeeccee
Q psy504          142 AYGGGLEMALACDI--RVAASNVRMGLVETK  170 (358)
Q Consensus       142 a~GgG~~lal~cD~--riase~a~f~~pe~~  170 (358)
                      |.++|.-++++||.  |++.+++.+......
T Consensus        99 AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~  129 (201)
T 3p2l_A           99 AASMGSLLLAGGAKGKRYSLPSSQIMIHQPL  129 (201)
T ss_dssp             EETHHHHHHHTSSTTCEEECTTCEEEECCCE
T ss_pred             ehhHHHHHHHcCccCCEEEcCCCeEEEeccc
Confidence            99999999999998  999999988775543

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=97.63  E-value=0.00043  Score=69.74  Aligned_cols=182  Identities=18%  Similarity=0.181  Sum_probs=126.5

Q ss_pred             eeecCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHH-cCCCceEEEEeecCCCceecCCCchhccc
Q psy504           42 SPERPGIVELCMNRPQAR-------------NALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVFCAGADLKHRLT  107 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~~-------------Nal~~~m~~eL~~~l~~~~-~d~~vrvVVltg~gg~~FsaG~Dl~~~~~  107 (358)
                      .....+++.++...|...             +.....|..||.+++..+. ++.++...++...|...--...|---...
T Consensus       272 i~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~~~~~~~~~~~~~~  351 (556)
T 2w3p_A          272 IDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADASLMQH  351 (556)
T ss_dssp             EETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCHHHHhhhHHHHHhc
Confidence            334678999999887632             2223468888866665554 66788888888773211111111110011


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec-cccccCC-ceeeccccEEEEcC-------CeEEeecceecccccCcc
Q psy504          108 LNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD-GSAYGGG-LEMALACDIRVAAS-------NVRMGLVETKLAIIPGAG  178 (358)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn-G~a~GgG-~~lal~cD~riase-------~a~f~~pe~~lGl~p~~g  178 (358)
                      .+..-..+....+++.+.++.-...-+++.|+ |.|+.|- +||+++||..|+-+       .+.+.+.+.++|..|..-
T Consensus       352 ~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (556)
T 2w3p_A          352 KDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVT  431 (556)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGGTTSCCTT
T ss_pred             cchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccccCcccCCC
Confidence            12223455666777888888889999999997 9999886 59999999999853       378999999999999887


Q ss_pred             cccccccc-cchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          179 GTQRLPRI-VGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       179 ~s~~L~r~-iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      +..+|.++ .|.....+-+..-.|+++++       .+|.+.|||+..-.+-+
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  477 (556)
T 2w3p_A          432 HQSRLARRFYEETEPLDAVRSRIGQAIKP-------VEAERLGLVTASPDDID  477 (556)
T ss_dssp             SSCHHHHHTTTCHHHHHHHHTTTTSCBCH-------HHHHHTTSSSBCCCTTT
T ss_pred             chhHHHHHhcCCcchHHHHHHHhCCCCCH-------HHHHhcCCeecCcccCC
Confidence            77777755 56655554444466999999       99999999987665544

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.42  E-value=0.00028  Score=72.11  Aligned_cols=162  Identities=14%  Similarity=0.094  Sum_probs=100.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc-C-HHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-N-EDQIRSFVSTLRYMTC  125 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~-~-~~~~~~~~~~~~~l~~  125 (358)
                      |.++-.+..-..-++.....+.+.++++.+.+..- =+|.|.-+      +|+.+.+-... . ...   + .....-..
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~l-PvI~l~dS------gGArlqe~~~~l~~~~~---~-g~i~~~~~  175 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHV-PLVYVLNC------SGVKFDEQEKVYPNRRG---G-GTPFFRNA  175 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHTC-CEEEEECC------CEECGGGHHHHSSSTTS---T-THHHHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcCC-CEEEEEeC------CCCCccccchhcccccc---H-HHHHHHHH
Confidence            55555555445568899999999999999987654 35555443      35555431110 0 000   0 11222244


Q ss_pred             HHHcCCCcEEEeeccccccCCceeeccccEEEEcC-CeEEeecceecccccCcccccccccccchhhHHhhhhhhccccc
Q psy504          126 QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCM  204 (358)
Q Consensus       126 ~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase-~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i  204 (358)
                      .+....+|+|++|.|+|.|||+.. ..||++|+++ ++.+++.-      |..--...-...++..+|.++.+ .+|+.+
T Consensus       176 ~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~G------P~vi~~~~~~~~~d~~~A~el~~-~tge~v  247 (587)
T 1pix_A          176 ELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGG------AGIMGGMNPKGHVDLEYANEIAD-MVDRTG  247 (587)
T ss_dssp             HHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCC------CTTCCSCCSSSSCCHHHHHHHHH-HHHTTC
T ss_pred             HHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecC------HHHHhhhccccccchhHHHHHHH-HhCCcc
Confidence            567889999999999999999999 8899998886 48888731      11111101112378899999864 578877


Q ss_pred             ccccccccchhhH--hcCCceEEEecCC
Q psy504          205 SSLDTRYMWCTPY--RRGLVVTLVIKFS  230 (358)
Q Consensus       205 ~a~~d~~mw~ea~--~~GLv~~vv~~~~  230 (358)
                      ++.  ..--.+.+  +.|++|.++.+..
T Consensus       248 ~~e--~lgga~~h~~~~GvvD~vv~~e~  273 (587)
T 1pix_A          248 KTE--PPGAVDIHYTETGFMREVYASEE  273 (587)
T ss_dssp             CCC--CSSBHHHHTTTSCCSCEEESSHH
T ss_pred             Chh--hcccHHHHHhhcCceeEecCCHH
Confidence            650  00002222  5899999996543

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.26  E-value=0.0054  Score=57.20  Aligned_cols=109  Identities=13%  Similarity=0.125  Sum_probs=74.8

Q ss_pred             ecCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHH--HHHHH
Q psy504           44 ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRS--FVSTL  120 (358)
Q Consensus        44 ~~~~-V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~--~~~~~  120 (358)
                      .++. |+++..|..-..-+++....+.+.++++.+.+.. +=+|.|.-++|      +-..       +....  .....
T Consensus       118 I~G~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~dsgG------ar~q-------EGi~sl~q~aki  183 (285)
T 2f9i_B          118 LDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSASGG------ARMQ-------EGIISLMQMGKT  183 (285)
T ss_dssp             ETTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEECS------CCGG-------GHHHHHHHHHHH
T ss_pred             ECCEEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC------cchh-------hhhhhHhHHHHH
Confidence            3444 5555444333456899999999999999988765 45666665422      2221       12222  22334


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCce-eeccccEEEEcCCeEEee
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLE-MALACDIRVAASNVRMGL  166 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~-lal~cD~riase~a~f~~  166 (358)
                      ...+.++.....|.|+.+-|+|.||+.. +++.+|+++|.++|.+++
T Consensus       184 ~~~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~  230 (285)
T 2f9i_B          184 SVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGF  230 (285)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEES
T ss_pred             HHHHHHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEE
Confidence            4456677778999999999999999854 488999999999988776

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.10  E-value=0.0038  Score=62.98  Aligned_cols=108  Identities=13%  Similarity=0.166  Sum_probs=71.1

Q ss_pred             cCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           45 RPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        45 ~~~-V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      ++. |+++..|..-..-++.....+.+.++++.+.+.. +=+|.|.-.      .|+.+.+       ....+ ..+.++
T Consensus        95 ~Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~dS------gGaRmqE-------g~~~l-~~~~~i  159 (530)
T 3iav_A           95 DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDS------GGARIQE-------GVASL-GAYGEI  159 (530)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECC------CSBCGGG-------THHHH-HHHHHH
T ss_pred             CCEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHcC-CCEEEEEcC------CCcchhh-------hhhhH-HHHHHH
Confidence            443 4444444444667899999999999999998764 345555543      2444432       11111 122233


Q ss_pred             HHHHHcC--CCcEEEeeccccccCCceeeccccEEEEcCC-eEEeec
Q psy504          124 TCQLESI--PVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLV  167 (358)
Q Consensus       124 ~~~i~~~--~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~p  167 (358)
                      +.++..+  ..|+|++|.|+|.|||.....+||++|++++ +.+++.
T Consensus       160 ~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a  206 (530)
T 3iav_A          160 FRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT  206 (530)
T ss_dssp             HHHHHHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS
T ss_pred             HHHHHHHcCCCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec
Confidence            3332222  4999999999999999998889999999875 877763

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.00  E-value=0.00084  Score=68.99  Aligned_cols=86  Identities=12%  Similarity=0.081  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHcCCCceEEEEeecCCCceecC-CCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecccccc
Q psy504           66 LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAG-ADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG  144 (358)
Q Consensus        66 m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG-~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~G  144 (358)
                      ...++.+.|+.+..|+.++.|+|.-.     |.| +++..            ...+++.+..+....|||||.+++ +.-
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~in-----spGgG~v~~------------~~~I~~~i~~~k~~gkpvva~~~~-aas  132 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLK-----NFAGGDQPS------------MQYIGKALKEFRDSGKPVYAVGEN-YSQ  132 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECT-----EEEECCHHH------------HHHHHHHHHHHHHTTCCEEEEESC-EEH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeC-----CCCCCcHHH------------HHHHHHHHHHHHhcCCeEEEEEcc-chh
Confidence            46788999999999999999999876     334 55532            234455566666668999999876 556


Q ss_pred             CCceeeccccEEEEcCCeEEeecce
Q psy504          145 GGLEMALACDIRVAASNVRMGLVET  169 (358)
Q Consensus       145 gG~~lal~cD~riase~a~f~~pe~  169 (358)
                      +|+-|+++||-+++.+.+.++.-..
T Consensus       133 ~~y~lAsaad~i~~~P~~~vg~~g~  157 (593)
T 3bf0_A          133 GQYYLASFANKIWLSPQGVVDLHGF  157 (593)
T ss_dssp             HHHHHHTTSSEEEECTTCCEECCCC
T ss_pred             HHHHHHHhCCEEEECCCceEEEecc
Confidence            7799999999999999988776544

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=96.92  E-value=0.0062  Score=61.44  Aligned_cols=148  Identities=11%  Similarity=0.114  Sum_probs=91.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |+++..+..-..-++.....+.+.++++.+.+..- =+|.|.-.      .|+.+.+-    -.....+.+.+.....  
T Consensus       107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~l-PvI~l~dS------GGARmqeg----~~sl~~~~~i~~~~~~--  173 (531)
T 3n6r_B          107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGA-PVIGINDS------GGARIQEG----VDSLAGYGEVFQRNIM--  173 (531)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTC-CEEEEECC------CCBCGGGT----HHHHHHHHHHHHHHHH--
T ss_pred             EEEEEECCCcccccccHHHHHHHHHHHHHHHHcCC-CEEEEeCC------CccccCcc----cchhhhHHHHHHHHHH--
Confidence            44555554445678999999999999999887543 45555443      35555431    1111112222222111  


Q ss_pred             HcCCCcEEEeeccccccCCceeeccccEEEEcCC-eEEeecceecccccCcccccccccccchhhHHhhhhhhccccccc
Q psy504          128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSS  206 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a  206 (358)
                      ..-..|+|++|.|+|.|||......||++|+.++ +.+++.                    |+... +.   .+|+.+++
T Consensus       174 ~s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a--------------------GP~vI-~~---~~ge~v~~  229 (531)
T 3n6r_B          174 ASGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT--------------------GPDVV-KT---VTNEQVSA  229 (531)
T ss_dssp             TTTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHH-HH---HHCCCCCH
T ss_pred             HhCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeec--------------------CHHHH-HH---HhCCccCh
Confidence            1245899999999999999988888999999985 765552                    21111 11   45666666


Q ss_pred             ccccccchhh-------HhcCCceEEEecCCccHHHHHHHHh
Q psy504          207 LDTRYMWCTP-------YRRGLVVTLVIKFSQPVHISALIVW  241 (358)
Q Consensus       207 ~~d~~mw~ea-------~~~GLv~~vv~~~~~~~~~~~l~~~  241 (358)
                             ++.       .+.|+++.++.+..  ..+..++.+
T Consensus       230 -------E~LGGa~~h~~~sG~~d~v~~~e~--~a~~~~r~l  262 (531)
T 3n6r_B          230 -------EELGGATTHTRKSSVADAAFENDV--EALAEVRRL  262 (531)
T ss_dssp             -------HHHHBHHHHHHTTSCCSEEESSHH--HHHHHHHHH
T ss_pred             -------hhcchHHHHhhccCcceEEeCCHH--HHHHHHHHH
Confidence                   554       67999999986533  334444433

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=96.91  E-value=0.0016  Score=57.84  Aligned_cols=95  Identities=15%  Similarity=0.169  Sum_probs=66.0

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceE--EEEeecCCCc----eecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEE
Q psy504           62 LNATLVEEILTAVEAIRGDEEVRC--VLLRSLVKDV----FCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVL  135 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vrv--VVltg~gg~~----FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  135 (358)
                      ++.++.+.+...|..++.++..+-  +.|-+. |..    ...-+++               .....++..+...+.||.
T Consensus        37 I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSp-G~~~~~~~~~~G~v---------------~aglaIyd~m~~~~~~V~  100 (205)
T 4gm2_A           37 IYPHISEQIISQLLYLEYESKRKPIHLYINST-GDIDNNKIINLNGI---------------TDVISIVDVINYISSDVY  100 (205)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTCCEEEEEEEC-TTEETTEESCTTHH---------------HHHHHHHHHHHHSSSCEE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCC-CCCCcCCCCCCCCH---------------HHHHHHHHHHHhcCCCEE
Confidence            788999999999998875433332  334444 200    0000222               223456677788899999


Q ss_pred             EeeccccccCCceeecccc--EEEEcCCeEEeecceecc
Q psy504          136 AVLDGSAYGGGLEMALACD--IRVAASNVRMGLVETKLA  172 (358)
Q Consensus       136 aavnG~a~GgG~~lal~cD--~riase~a~f~~pe~~lG  172 (358)
                      ..+-|.|.+.|.-|++++|  .|++.+++++-+-....|
T Consensus       101 t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~  139 (205)
T 4gm2_A          101 TYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSI  139 (205)
T ss_dssp             EEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCC
T ss_pred             EEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCccc
Confidence            9999999999999999998  599999988876544433

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.81  E-value=0.015  Score=58.60  Aligned_cols=107  Identities=14%  Similarity=0.197  Sum_probs=73.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |+++..+..-..-++.....+.+.++++.+.+.. +-+|.|..      |.|+.+.+-.    .....+.+.+..+. ..
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~~------SGGARmqeg~----~sl~~~~~i~~~~~-~~  164 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTG-TPFLFFYD------SGGARIQEGI----DSLSGYGKMFFANV-KL  164 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE------ECSBCGGGTH----HHHHHHHHHHHHHH-HH
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHcC-CCEEEEEc------CCCCChhhHH----HHHHHHHHHHHHHH-Hh
Confidence            4555555444667899999999999999998764 44566655      3366664421    11112222222222 22


Q ss_pred             HcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeec
Q psy504          128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV  167 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~p  167 (358)
                       .-..|.|+++.|+|.||+......||++|+.+++.+++.
T Consensus       165 -s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a  203 (523)
T 1on3_A          165 -SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT  203 (523)
T ss_dssp             -TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS
T ss_pred             -cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec
Confidence             345999999999999999998899999999988887665

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.55  E-value=0.024  Score=57.52  Aligned_cols=107  Identities=15%  Similarity=0.184  Sum_probs=71.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |+++..+..-..-++.....+.+.++++.+.+.. +-+|.|.-      |.|+.+.+-..    ....+.+.+..+.. +
T Consensus       110 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~d------SGGARmqeg~~----sl~~~~~i~~~~~~-~  177 (548)
T 2bzr_A          110 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGIND------GAGARIQEGVV----SLGLYSRIFRNNIL-A  177 (548)
T ss_dssp             EEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHT-CCEEEEEC------CCSCCGGGTTH----HHHHHHHHHHHHHH-T
T ss_pred             EEEEEEcCccccCCCChhHHHHHHHHHHHHHHcC-CCEEEEEc------CCCCCchhHHH----HHHHHHHHHHHHHH-h
Confidence            4445554444567899999999999999998764 44566654      33666654211    11122222222221 1


Q ss_pred             HcCCCcEEEeeccccccCCceeeccccEEEEcCC-eEEeec
Q psy504          128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLV  167 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~p  167 (358)
                       .-..|.|+++.|+|.||+......||++|+.++ +.+++.
T Consensus       178 -s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a  217 (548)
T 2bzr_A          178 -SGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT  217 (548)
T ss_dssp             -TTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS
T ss_pred             -cCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec
Confidence             344999999999999999988889999999986 877664

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.20  E-value=0.026  Score=57.22  Aligned_cols=142  Identities=15%  Similarity=0.179  Sum_probs=86.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc-C-HHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-N-EDQIRSFVSTLRYMTC  125 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~-~-~~~~~~~~~~~~~l~~  125 (358)
                      |.++..+.--..-++.....+.+.++++.+.+..- =+|.|.-+ |     |+.+.+-... . ....    ..+..-..
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~l-PvI~l~dS-g-----GARl~~q~~~~~~~~~~----~~i~~~~~  191 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALENRL-PCIYLVDS-G-----GANLPRQDEVFPDREHF----GRIFFNQA  191 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTC-CEEEEECC-C-----CBCGGGGGGTSSSTTST----THHHHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcCC-CEEEEECC-C-----CCCCCCcceeecccccH----HHHHHHHH
Confidence            45555554445668999999999999999987643 45555443 2     2332110000 0 0000    11111233


Q ss_pred             HHHcCCCcEEEeeccccccCCceeeccccEEEEcC-CeEEeecceecccccCcccccccccccchhhHHhhhhhhccccc
Q psy504          126 QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCM  204 (358)
Q Consensus       126 ~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase-~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i  204 (358)
                      .+.....|+|++|.|+|.|||......||++++.+ ++.+++                    -|+. ..+.   .+|+.+
T Consensus       192 ~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~--------------------aGP~-vik~---~~ge~~  247 (555)
T 3u9r_B          192 NMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFL--------------------AGPP-LVKA---ATGEVV  247 (555)
T ss_dssp             HHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBS--------------------SCHH-HHHH---HHCCCC
T ss_pred             HHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEE--------------------ccHH-HHHH---HhcCcc
Confidence            45567899999999999999999999999988875 454333                    1111 1122   456666


Q ss_pred             ccccccccchhh-------HhcCCceEEEecCCc
Q psy504          205 SSLDTRYMWCTP-------YRRGLVVTLVIKFSQ  231 (358)
Q Consensus       205 ~a~~d~~mw~ea-------~~~GLv~~vv~~~~~  231 (358)
                      ++       ++.       .+.|+++.++.+..+
T Consensus       248 ~~-------e~LGGa~~h~~~sGv~d~v~~de~~  274 (555)
T 3u9r_B          248 SA-------EELGGADVHCKVSGVADHYAEDDDH  274 (555)
T ss_dssp             CH-------HHHHBHHHHHHTTCSCSEEESSHHH
T ss_pred             Ch-------hhccchhhhhhccCceeEEeCCHHH
Confidence            65       444       579999999865443

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.11  E-value=0.016  Score=58.51  Aligned_cols=111  Identities=14%  Similarity=0.240  Sum_probs=75.7

Q ss_pred             ecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        44 ~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      .++.-..|.-|++. ..-+++.+..+...++++.+.+. .+=+|.|.-+ + .|..|.+-         +.....+.+.+
T Consensus       322 i~G~~V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds-~-G~~~G~~~---------E~~G~~~~~Ak  389 (522)
T 1x0u_A          322 IAGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDT-P-GYVPGTDQ---------EYKGIIRHGAK  389 (522)
T ss_dssp             ETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-C-CBCCSHHH---------HHTTHHHHHHH
T ss_pred             ECCEEEEEEEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecC-C-CCCCchHH---------HHHHHHHHHHH
Confidence            34433333334443 33579999999999999988764 4556666655 2 24433322         22233446666


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceee----ccccEEEEcCCeEEee
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMA----LACDIRVAASNVRMGL  166 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~la----l~cD~riase~a~f~~  166 (358)
                      ++.++....+|.|+.|-|.|.|||+...    +.+|+++|.+++.+++
T Consensus       390 ~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v  437 (522)
T 1x0u_A          390 MLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAV  437 (522)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEe
Confidence            7888899999999999999999866333    3599999999988876

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=95.80  E-value=0.046  Score=55.09  Aligned_cols=106  Identities=15%  Similarity=0.189  Sum_probs=71.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |+++..+..-..-++.....+.+.++++.+.+.. +-+|.|..      |.|+.+.+-.    .....+.+.+..+.. .
T Consensus        93 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-~P~I~l~~------SGGaRmqeg~----~sl~~~~~i~~~~~~-~  160 (522)
T 1x0u_A           93 VFAYAQDFTVLGGSLGETHANKIVRAYELALKVG-APVVGIND------SGGARIQEGA----LSLEGYGAVFKMNVM-A  160 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC------CCSBCGGGTH----HHHHHHHHHHHHHHH-H
T ss_pred             EEEEEecCceeCccccHHHHHHHHHHHHHHHHcC-CCEEEEEc------CCCCChhHHH----HHHHHHHHHHHHHHH-h
Confidence            4455554444567899999999999999998754 44666655      3366665421    111122222222222 2


Q ss_pred             HcCCCcEEEeeccccccCCceeeccccEEEEcCC-e-EEee
Q psy504          128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-V-RMGL  166 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a-~f~~  166 (358)
                       .-..|.|+++.|+|.||+......||++|+.++ + .+++
T Consensus       161 -s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~  200 (522)
T 1x0u_A          161 -SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFV  200 (522)
T ss_dssp             -TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEES
T ss_pred             -CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEe
Confidence             345999999999999999998899999999987 7 6665

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=95.57  E-value=0.055  Score=54.57  Aligned_cols=106  Identities=17%  Similarity=0.217  Sum_probs=69.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |+++-.+..-..-++.....+.+.++++.+.+..-. +|.|.-+      .|+.+.+-.    .....+.+.+..+.  .
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~lP-vI~l~dS------gGAR~qeg~----~~l~g~~~~~~~~~--~  166 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIP-VIGINDS------GGARIQEGV----DALAGYGEIFLRNT--L  166 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCC-EEEEEEE------CSBCGGGTH----HHHHHHHHHHHHHH--H
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHcCCC-EEEEECC------CCCCccchh----HHHHHHHHHHHHHH--H
Confidence            555555543356789999999999999988876443 4555443      244443211    11112222233332  2


Q ss_pred             HcCCCcEEEeeccccccCCceeeccccEEEEcCC-eEEee
Q psy504          128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGL  166 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~  166 (358)
                      .....|+|++|.|+|.|||......||++|+.++ +.+++
T Consensus       167 ~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~  206 (527)
T 1vrg_A          167 ASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFI  206 (527)
T ss_dssp             HTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBS
T ss_pred             hCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEe
Confidence            2567999999999999999988889999999987 66443

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=94.16  E-value=0.13  Score=52.36  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             cCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchh---ccccCHHHHHHHHHHH
Q psy504           45 RPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH---RLTLNEDQIRSFVSTL  120 (358)
Q Consensus        45 ~~~-V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~---~~~~~~~~~~~~~~~~  120 (358)
                      ++. |+++-.+.--+.-++.....+.+.++++.+.+..- =+|.|.-+ |     |+.+.+   ... ...   .+.+ .
T Consensus       104 ~Gr~V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~l-PvI~l~dS-g-----GArl~~qe~~~~-~l~---~~g~-i  171 (588)
T 3gf3_A          104 DGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMHL-PLIYLLNC-S-----GVEFPNQDKVYP-NRR---GGGT-P  171 (588)
T ss_dssp             TTEEEEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHTC-CEEEEECC-C-----CBCGGGHHHHSS-STT---STTH-H
T ss_pred             CCEEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcCC-CEEEEEcC-C-----CcCccccccccc-chh---hHHH-H
Confidence            444 44444444335568888999999999999987643 45555444 2     333321   100 000   0011 1


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeec
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV  167 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~p  167 (358)
                      ..-...+.....|+|++|-|+|.|||...++++|++++.+++.+++.
T Consensus       172 f~~~~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~a  218 (588)
T 3gf3_A          172 FFRNSELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVG  218 (588)
T ss_dssp             HHHHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESS
T ss_pred             HHHHHHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEec
Confidence            11223445678999999999999998866888899888888988874

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=92.76  E-value=0.96  Score=46.10  Aligned_cols=94  Identities=7%  Similarity=0.106  Sum_probs=71.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504           60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD  139 (358)
Q Consensus        60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn  139 (358)
                      -.++++-.....+.++.+++ .++=+|.|.-+  ..|..|.+-         +.....+...+++.++..+.+|+|+.|-
T Consensus       385 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt--pGf~~G~~~---------E~~Gi~~~gA~~~~a~a~a~vP~itvI~  452 (587)
T 1pix_A          385 GKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT--TGIDVGNDA---------EKAELLGLGQSLIYSIQTSHIPQFEITL  452 (587)
T ss_dssp             TEECHHHHHHHHHHHHHHHH-TTCCEEEEECC--CEECCSHHH---------HHTTHHHHHHHHHHHHHTCCCCEEEEEC
T ss_pred             CCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC--CCCCCcHHH---------HHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence            46999999999999987764 45667777665  346666442         3334567788899999999999999999


Q ss_pred             cccccCCceeecc-----c--cEEEEcCCeEEee
Q psy504          140 GSAYGGGLEMALA-----C--DIRVAASNVRMGL  166 (358)
Q Consensus       140 G~a~GgG~~lal~-----c--D~riase~a~f~~  166 (358)
                      |.+.|||+ ++++     +  |+++|.+++.++.
T Consensus       453 g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~V  485 (587)
T 1pix_A          453 RKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIAV  485 (587)
T ss_dssp             SEEETTHH-HHTTCTTCTTTEEEEEECTTCEEES
T ss_pred             CCCccHHH-HHhcCcccCcccceeeeccCCeEec
Confidence            99988774 5555     4  9998888888775

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=91.87  E-value=0.52  Score=47.46  Aligned_cols=113  Identities=12%  Similarity=0.175  Sum_probs=74.8

Q ss_pred             eeecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHH
Q psy504           42 SPERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL  120 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~  120 (358)
                      -+.++.-..|.=|+|. ..-+++.+-.....+.++.+++. .+=+|.|.=+ + .|..|.+-         +.....+..
T Consensus       325 ari~G~~V~via~~~~~~~G~~~~~~~~Kaar~i~~a~~~-~~Plv~lvDt-p-G~~~G~~~---------E~~g~~~~~  392 (527)
T 1vrg_A          325 ARIQGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-P-GYLPGVAQ---------EHGGIIRHG  392 (527)
T ss_dssp             EEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-C-CBCCCHHH---------HHTTHHHHH
T ss_pred             EEECCEEEEEEEEcCcccCCCCCHHHHHHHHHHHHHHhhc-CCCeEEEecC-C-CCcCchhh---------HHhHHHHHH
Confidence            3334443334444544 22479999999999999888654 4456666554 2 24444332         222345566


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeec----cccEEEEcCCeEEee
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMAL----ACDIRVAASNVRMGL  166 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal----~cD~riase~a~f~~  166 (358)
                      .+++..+....+|+|+.|-|.|.|||+.-..    .+|+++|.+++.++.
T Consensus       393 A~~~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~V  442 (527)
T 1vrg_A          393 AKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV  442 (527)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEEe
Confidence            6788888999999999999999888763322    278988888887765

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=91.75  E-value=0.55  Score=47.25  Aligned_cols=113  Identities=17%  Similarity=0.271  Sum_probs=80.6

Q ss_pred             eeeecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHH
Q psy504           41 NSPERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVST  119 (358)
Q Consensus        41 l~~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~  119 (358)
                      +-+.++.-.-|.=|+|. ..-+++.+......+.++.+++. ++=+|.|.=+ +. |..|.+-         +.....+.
T Consensus       326 ~arl~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDt-pG-f~~G~~~---------E~~gi~~~  393 (530)
T 3iav_A          326 FGRVEGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV-PG-FLPGVDQ---------EHDGIIRR  393 (530)
T ss_dssp             EEEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CC-BCCCHHH---------HHTTHHHH
T ss_pred             EEEECCEEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeC-CC-CCccHHH---------HHhhHHHH
Confidence            34445554445555654 22479999999999999887764 4556666655 22 6666543         23456677


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeecc-----ccEEEEcCCeEEee
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALA-----CDIRVAASNVRMGL  166 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~-----cD~riase~a~f~~  166 (358)
                      ..+++.++....+|+|+.|-|.+.|||. ++++     +|+++|.+++.++.
T Consensus       394 ~Ak~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V  444 (530)
T 3iav_A          394 GAKLIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV  444 (530)
T ss_dssp             HHHHHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec
Confidence            8889999999999999999999998765 4444     69999988888776

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=91.70  E-value=0.55  Score=47.47  Aligned_cols=113  Identities=19%  Similarity=0.298  Sum_probs=76.4

Q ss_pred             eeecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHH
Q psy504           42 SPERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL  120 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~  120 (358)
                      -+.++.-..|.=|+|. ..-+++.+-.....+.++.+++. .+=+|.|.=+ + .|..|.+-         +.....+..
T Consensus       342 ari~G~~Vgvian~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt-~-Gf~~G~~~---------E~~Gi~~~g  409 (548)
T 2bzr_A          342 GRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-P-GFLPGTDQ---------EYNGIIRRG  409 (548)
T ss_dssp             EEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-C-CBCCCHHH---------HHTTHHHHH
T ss_pred             EEECCEEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec-c-CCCCChHH---------HHhhHHHHH
Confidence            3344443334444544 22479999999999999988754 4455555544 2 25555443         223345566


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceee----ccccEEEEcCCeEEee
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMA----LACDIRVAASNVRMGL  166 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~la----l~cD~riase~a~f~~  166 (358)
                      .+++..+....+|+|+.|-|.|.|||+.-.    +.+|+++|.++++++.
T Consensus       410 a~~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~V  459 (548)
T 2bzr_A          410 AKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV  459 (548)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEe
Confidence            777888899999999999999998876333    2389999988888775

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=91.46  E-value=0.63  Score=46.81  Aligned_cols=112  Identities=17%  Similarity=0.192  Sum_probs=76.4

Q ss_pred             eecCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQA-RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR  121 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~-~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~  121 (358)
                      +.++.-..|.=|+|.. .-+++.+-.....+.++.+++ .++=+|.|.=+ + .|..|.+-         +.....+...
T Consensus       322 ri~G~~Vgvian~~~~~~G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDt-p-Gf~~G~~~---------E~~Gi~~~~A  389 (523)
T 1on3_A          322 RVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDV-P-GFLPGVQQ---------EYGGIIRHGA  389 (523)
T ss_dssp             EETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-C-CBCCCHHH---------HHTTHHHHHH
T ss_pred             EECCEEEEEEEecCCccCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeC-C-CcCcchHH---------HHhhHHHHHH
Confidence            3344433344445542 247999999999999988865 44556666555 2 35555432         2234556677


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeecc----ccEEEEcCCeEEee
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALA----CDIRVAASNVRMGL  166 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~----cD~riase~a~f~~  166 (358)
                      +++..+.+..+|+|+.|-|.+.|||+.-...    +|+++|.+++.++.
T Consensus       390 ~~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~V  438 (523)
T 1on3_A          390 KMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAV  438 (523)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEEe
Confidence            8888999999999999999999887643333    78888888877765

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=91.10  E-value=0.71  Score=46.47  Aligned_cols=113  Identities=16%  Similarity=0.194  Sum_probs=78.4

Q ss_pred             eeecCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHH
Q psy504           42 SPERPGIVELCMNRPQA-RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL  120 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~-~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~  120 (358)
                      -+.++.-.-|.=|+|.. .-+++.+......+.++.+++. ++=+|.|.=+ + .|..|.+-         +.....+..
T Consensus       333 arl~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDt-p-Gf~~G~~~---------E~~Gi~~~g  400 (531)
T 3n6r_B          333 IRLEGRTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDV-P-GFLPGTSQ---------EYGGVIKHG  400 (531)
T ss_dssp             EEETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-C-SBCCSHHH---------HHTTHHHHH
T ss_pred             EEECCEEEEEEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCC-C-CCCCCHHH---------HHhhHHHHH
Confidence            33445444444455542 2479999999999999877754 4556666655 2 24445332         233456777


Q ss_pred             HHHHHHHHcCCCcEEEeeccccccCCceeec----cccEEEEcCCeEEee
Q psy504          121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMAL----ACDIRVAASNVRMGL  166 (358)
Q Consensus       121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal----~cD~riase~a~f~~  166 (358)
                      .+++.++.+..+|+|+.|-|.+.|||+.-..    .+|+++|.+++.++.
T Consensus       401 Ak~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~V  450 (531)
T 3n6r_B          401 AKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAV  450 (531)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEec
Confidence            8899999999999999999999988763222    389999988887776

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=90.69  E-value=0.81  Score=47.76  Aligned_cols=34  Identities=6%  Similarity=0.028  Sum_probs=31.5

Q ss_pred             CCCcEEEeeccccccCCceeeccccEEEEcCCeE
Q psy504          130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR  163 (358)
Q Consensus       130 ~~kPvIaavnG~a~GgG~~lal~cD~riase~a~  163 (358)
                      ...|+|++|.|+|.|||+.+...||++|+.+++.
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~  278 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQP  278 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCC
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCce
Confidence            5689999999999999999999999999998863

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=88.76  E-value=1.4  Score=44.95  Aligned_cols=164  Identities=11%  Similarity=0.063  Sum_probs=101.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504           60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD  139 (358)
Q Consensus        60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn  139 (358)
                      -+++.+-...-.+.++.+++. ++=+|.|.-+  ..|..|.+-         +.....+...+++.++.++.+|+|+.|-
T Consensus       387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDt--pGf~~G~~a---------E~~Gi~~~gAk~l~a~a~a~VP~itvI~  454 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDT--TGIDVGDEA---------EKAELLGLGQSLIYSIENSKLPSLEITI  454 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC--CEECCSHHH---------HHTTHHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecC--CCCCCCHHH---------HHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence            368899999989988888764 5667777665  346666443         3345667788899999999999999999


Q ss_pred             cccccCCceeeccc-------cEEEEcCCeEEeecceecccccCccccccccccc------ch------hhHHhhhhhhc
Q psy504          140 GSAYGGGLEMALAC-------DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIV------GI------PLAALYEDLLN  200 (358)
Q Consensus       140 G~a~GgG~~lal~c-------D~riase~a~f~~pe~~lGl~p~~g~s~~L~r~i------G~------~~A~~ll~~lt  200 (358)
                      |.+.|||. +++++       |+++|.+++.++.-      -|.+.+...+.+.+      |.      ....++..-+.
T Consensus       455 g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~sVm------~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  527 (588)
T 3gf3_A          455 RKASAAAH-YVLGGPQGNNTNVFSIGTGACEYYVM------PGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQMYT  527 (588)
T ss_dssp             SEEETTHH-HHTTCTTCTTTEEEEEECTTCEEESS------CHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred             CCccHHHH-HHhcccccCCccceEEECCCceEEeC------CHHHHHHHHhhhHHhhhhccccccchHHHHHHHHHHHHH
Confidence            99987765 44443       37777777777652      12222222222111      10      00111211111


Q ss_pred             ccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccc
Q psy504          201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMS  250 (358)
Q Consensus       201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~  250 (358)
                      - ..++       ..|-+.|.++.|+...+.-..+.......++.+.+.+
T Consensus       528 ~-~~~p-------~~aA~r~~vD~VIdP~~TR~~l~~~~~~~~~~p~~~~  569 (588)
T 3gf3_A          528 D-KSRP-------KYCTEKGMVDEIVDMTEVRPYIQAFTEAAYQNPQSIC  569 (588)
T ss_dssp             H-TTSH-------HHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCSCCC
T ss_pred             H-hCCH-------HHHHhcCCCCeeeCHHHHHHHHHHHHHHHHcCCCccC
Confidence            1 1222       4556889999998776655566666666677776655

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=87.01  E-value=3.7  Score=41.43  Aligned_cols=94  Identities=17%  Similarity=0.240  Sum_probs=69.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504           60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD  139 (358)
Q Consensus        60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn  139 (358)
                      -+++.+......+.++.+++. ++=+|.|.-+ + .|..|.+-         +.....+...+++.++....+|+|+.|-
T Consensus       366 G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDt-p-Gf~~G~~~---------E~~Gi~~~gAk~~~a~~~a~vP~itvi~  433 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQR-GIPLLFLQNI-T-GFMVGQKY---------EAGGIAKHGAKLVTAVACARVPKFTVLI  433 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHH-TCCEEEEEEE-C-CBCCSHHH---------HHTTHHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHhcC-CCCEEEEecC-c-CCCCCHHH---------HHHHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            578999999988888888653 4567777766 3 25555432         2234556778889999999999999999


Q ss_pred             cccccCCceeec-----cccEEEEcCCeEEee
Q psy504          140 GSAYGGGLEMAL-----ACDIRVAASNVRMGL  166 (358)
Q Consensus       140 G~a~GgG~~lal-----~cD~riase~a~f~~  166 (358)
                      |.+.|||. +++     .+|+++|.+++.++.
T Consensus       434 g~~~Ggg~-~am~~~~~~~d~~~a~p~A~i~V  464 (555)
T 3u9r_B          434 GGSFGAGN-YGMCGRAYDPRFLWMWPNARIGV  464 (555)
T ss_dssp             EEEETTHH-HHTTCGGGCCSEEEECTTCEEES
T ss_pred             CCccchhh-HhhcCccCCCCeEEEcCCcEEEc
Confidence            99888754 333     379999988888775

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=83.96  E-value=0.25  Score=51.89  Aligned_cols=37  Identities=14%  Similarity=0.114  Sum_probs=33.1

Q ss_pred             CCCcEEEeeccccccCCceeeccccEEEEcCCeEEee
Q psy504          130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL  166 (358)
Q Consensus       130 ~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~  166 (358)
                      ...|+|+.|.|+|.|||+.++..||++|+.+++.+.+
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~l  294 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIIL  294 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEES
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEe
Confidence            4699999999999999999999999999998865544

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=82.77  E-value=5.1  Score=41.84  Aligned_cols=95  Identities=16%  Similarity=0.263  Sum_probs=70.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504           60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD  139 (358)
Q Consensus        60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn  139 (358)
                      -.++++-.....+.++.+++..++=+|.|.-.  ..|..|.+-         +.....+...+++.++..+.+|+|+.|-
T Consensus       447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvDt--pGf~~G~~a---------E~~Gi~k~gAkll~A~a~a~VP~itVI~  515 (758)
T 3k8x_A          447 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW--RGFSGGQRD---------MFNEVLKYGSFIVDALVDYKQPIIIYIP  515 (758)
T ss_dssp             TEECHHHHHHHHHHHHHHHHTSCCCEEECCCC--CEECCSHHH---------HHTTHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCEEEEecC--CCCCCCHHH---------HHccHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            46889999999999998886355667777665  357777543         2345667788899999999999999998


Q ss_pred             --cccccCCceeecc----ccE--EEEcCCeEEee
Q psy504          140 --GSAYGGGLEMALA----CDI--RVAASNVRMGL  166 (358)
Q Consensus       140 --G~a~GgG~~lal~----cD~--riase~a~f~~  166 (358)
                        |.+.||++ ++++    +|+  ++|.+++.++.
T Consensus       516 RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~isV  549 (758)
T 3k8x_A          516 PTGELRGGSW-VVVDPTINADQMEMYADVNARAGV  549 (758)
T ss_dssp             TTCEEETHHH-HTTCGGGSTTTEEEEEETTCEEES
T ss_pred             cCCccchHHH-HHhCcccCCCHHHHhcCCCCEEEc
Confidence              88887766 4444    454  67766666655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	1e-35
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	9e-18
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	9e-18
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	5e-17
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	6e-13
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	4e-11
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	2e-08
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	3e-08
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	3e-08
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	1e-06
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	1e-06
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	2e-06
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	3e-06
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	5e-05
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	1e-04

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  128 bits (323), Expect = 1e-35
 Identities = 52/156 (33%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 37  IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
           II     +   +  + +NRP+A NAL   L+EE+  A+E    D  V  ++L    K   
Sbjct: 6   IITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFA 65

Query: 97  CAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
                 + +   N      +          +  I  PV+A ++G A GGG E+A+ CDI 
Sbjct: 66  AGADIKEMQ---NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDII 122

Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
            A    + G  E  L  IPGAGGTQRL R VG  LA
Sbjct: 123 YAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLA 158

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (195), Expect = 9e-18
 Identities = 79/149 (53%), Positives = 111/149 (74%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
           E  GIV L +NR   +N+L+  L++ +  AV+A++ D++VR +++RS V  +FCAGADLK
Sbjct: 12  ENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLK 71

Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
            R  ++  ++  FVS +R +   + ++PVP +A +DG A GGGLE+ALACDIRVAAS+ +
Sbjct: 72  ERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK 131

Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
           MGLVETKLAIIPG GGTQRLPR +G+ LA
Sbjct: 132 MGLVETKLAIIPGGGGTQRLPRAIGMSLA 160

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.2 bits (196), Expect = 9e-18
 Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 10/183 (5%)

Query: 45  RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
           +  ++ + +NRP+ RNA+N     E++   + I  D + R V++    K        +  
Sbjct: 11  QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDM 70

Query: 105 RLTLNEDQIRSFVSTLRYMTCQ----------LESIPVPVLAVLDGSAYGGGLEMALACD 154
              + +           Y+             +E  P PV+A + G   GGG+++  ACD
Sbjct: 71  ASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD 130

Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWC 214
           IR    +    + E  + +    G  QRLP+++G               M+         
Sbjct: 131 IRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLV 190

Query: 215 TPY 217
           +  
Sbjct: 191 SRV 193

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 77.8 bits (190), Expect = 5e-17
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 12/216 (5%)

Query: 44  ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
           E+  +  + +N P+ RN L+  +   +L A++ +  D  VR V+L    K          
Sbjct: 5   EKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAF 64

Query: 104 HRLTLNEDQIRSFVSTL--RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
                      ++  +L    +  ++ + P P +A ++G A  GG  +ALACD+ V    
Sbjct: 65  LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE 124

Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAAL---------YEDLLNNDCMSSLDTRYM 212
            R+G  E K      A  +  L R VG   A             +      ++ +     
Sbjct: 125 ARLGYTEVK-IGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGK 183

Query: 213 WCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIE 248
                +           +       L++      +E
Sbjct: 184 ALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLE 219

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 66.3 bits (160), Expect = 6e-13
 Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 18/140 (12%)

Query: 34  LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
           LT I YH   +    V +  NRP+ RNA     V+E+   ++  R   +V  VLL     
Sbjct: 17  LTDITYHRHVDD-ATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGP 75

Query: 94  DVFCAGADLKHRLTLNE-----------------DQIRSFVSTLRYMTCQLESIPVPVLA 136
                G                            D  R+    +  +   +  +P  V+ 
Sbjct: 76  SPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVIC 135

Query: 137 VLDGSAYGGGLEMALACDIR 156
           +++G A GGG  + + CD+ 
Sbjct: 136 LVNGWAAGGGHSLHVVCDLT 155

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 60.6 bits (145), Expect = 4e-11
 Identities = 42/216 (19%), Positives = 75/216 (34%), Gaps = 13/216 (6%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA----GADL 102
           G+ E+ +  P+ RNAL+   ++E+  A+     D+ V  V++                 L
Sbjct: 12  GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPL 71

Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
              +    D  R        M  ++  +  PVLA ++G A GGGL ++LA D+ + A + 
Sbjct: 72  DKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLV 222
           +       + I      +  L RIVG+  A           +   +           GLV
Sbjct: 132 KFVCAWHTIGIGNDTATSYSLARIVGMRRA---------MELMLTNRTLYPEEAKDWGLV 182

Query: 223 VTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN 258
             +  K         +      A   +        +
Sbjct: 183 SRVYPKDEFREVAWKVARELAAAPTHLQVMAKERFH 218

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 47  GIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAG---ADL 102
           GIVEL  + + ++ N  N   + E+  AV+AI+ D  V+ V++ S  KDVF  G    + 
Sbjct: 16  GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEF 74

Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
                L + ++ +       +    E + VP +A ++G A GGGLEM LA D RV A + 
Sbjct: 75  VENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSA 134

Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR 218
           ++GL E KL I PG GGT RLPR   +       + + +   +  +          
Sbjct: 135 KIGLPEVKLGIYPGFGGTVRLPR---LIGVDNAVEWIASGKENRAEDALKVSAVDA 187

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 3e-08
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 6/142 (4%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
           GI ++  NRP+ +NA+N  +  EI+ A++A   D+ +  V   +   D + +G DL +  
Sbjct: 12  GITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITV--LTGNGDYYSSGNDLTNFT 69

Query: 107 TLNEDQIRSFVSTLRYMTCQL----ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
            +    +         +  +        P P++AV++G A G  + +    D   A+   
Sbjct: 70  DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 129

Query: 163 RMGLVETKLAIIPGAGGTQRLP 184
                 + L   P    +   P
Sbjct: 130 TFHTPFSHLGQSPEGCSSYTFP 151

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.0 bits (123), Expect = 3e-08
 Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 10/122 (8%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA-------- 98
               + +  P   NAL       +   +E    + +V   +++S  +             
Sbjct: 14  PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAK 73

Query: 99  --GADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
             G D     +     + +FV+   Y+T         ++  L+G A G    +   CDI 
Sbjct: 74  AQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIV 133

Query: 157 VA 158
            +
Sbjct: 134 YS 135

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
          RPG++E+   R +  NA+   L   +      +   E VR VLLR        
Sbjct: 17 RPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSA 68

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 47  GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
            +  +  N  +  NAL+   +++++ A+  +    E+RC++LR+       +     H L
Sbjct: 13  KVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRP-EIRCIILRAPSGSKVFSAGHDIHEL 71

Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
                   S+   LR +T  ++  P P++++++GS +GG  EM ++ D+ +AAS     +
Sbjct: 72  PSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSM 131

Query: 167 VETK 170
               
Sbjct: 132 TPVN 135

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 6/39 (15%), Positives = 15/39 (38%)

Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRC 85
          G++ + ++         +T  +E+      I  D E + 
Sbjct: 22 GVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKV 60

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAG 99
           +  + ++ P   N  + TL   +  A+     D+ VR V++    +  F AG
Sbjct: 9  EVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAG 61

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
          G+  +    P   N+L+   + E++ ++E +  D+  R V+L S    VF 
Sbjct: 13 GVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 62

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 44 ERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA 98
          +  G  ++ ++ R   +NALN  +++E++ A+ +   D + + VL  +      C 
Sbjct: 8  KEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCG 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.32
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	97.24
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	97.09
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.0
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	96.87
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.73
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	96.48
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	96.3
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	96.26
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.21
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	95.98
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	95.45
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	93.06
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	92.86
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	92.09
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	90.71
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	90.7
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	80.83

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.5e-44  Score=332.19  Aligned_cols=210  Identities=30%  Similarity=0.376  Sum_probs=178.1

Q ss_pred             eEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHH
Q psy504           36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRS  115 (358)
Q Consensus        36 ~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~  115 (358)
                      +..+....++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||. |++||+|+|++++.......  .
T Consensus         5 ~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~--~   81 (260)
T d1mj3a_           5 YIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQD--C   81 (260)
T ss_dssp             SEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECC-SSEEECCBCHHHHTTCCHHH--H
T ss_pred             EEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecc-cccccccchhhhhhccchhh--h
Confidence            33333333467999999999999999999999999999999999999999999998 89999999999987654432  3


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhh
Q psy504          116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALY  195 (358)
Q Consensus       116 ~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~l  195 (358)
                      +...+..++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.++|+++
T Consensus        82 ~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l  161 (260)
T d1mj3a_          82 YSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEM  161 (260)
T ss_dssp             HHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHH
T ss_pred             hHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHHHHHH
Confidence            44556677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504          196 EDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL  257 (358)
Q Consensus       196 l~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~  257 (358)
                      +  ++|+++++       ++|+++|||+++++..+.......+.......+.......|+++
T Consensus       162 ~--l~g~~~~a-------~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~~~~K~~l  214 (260)
T d1mj3a_         162 V--LTGDRISA-------QDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESV  214 (260)
T ss_dssp             H--HHCCCEEH-------HHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             H--HcCcccCc-------hhhccCCCceeeecccccccccccccccccchhhHHHHHHHHHH
Confidence            9  99999999       99999999999998877655555555444444444444444433

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=4e-43  Score=320.32  Aligned_cols=181  Identities=20%  Similarity=0.259  Sum_probs=167.3

Q ss_pred             eeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC-HHHHHHHHHH
Q psy504           41 NSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVST  119 (358)
Q Consensus        41 l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~-~~~~~~~~~~  119 (358)
                      +++.+|+|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.++++||+|.|++++.... .++...+...
T Consensus         3 ~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~   82 (230)
T d2a7ka1           3 FEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDR   82 (230)
T ss_dssp             EEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHH
T ss_pred             EEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchhh
Confidence            456789999999999999999999999999999999999999999999998778999999999987653 4456777888


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      +.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+ .+|++++|..+|++++  +
T Consensus        83 ~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~--l  159 (230)
T d2a7ka1          83 VIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEII--Y  159 (230)
T ss_dssp             HHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHH--H
T ss_pred             hhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-cccccccccccccccc--c
Confidence            899999999999999999999999999999999999999999999999999999998765 5799999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCc
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      +|++++|       ++|+++|||+++++..+.
T Consensus       160 ~g~~~~a-------~eA~~~Glv~~vv~~~~l  184 (230)
T d2a7ka1         160 QCQSLDA-------PRCVDYRLVNQVVESSAL  184 (230)
T ss_dssp             HCCCBCH-------HHHHHHTCCSEEECHHHH
T ss_pred             ccccchH-------HHHHHhhhcccCCChHHH
Confidence            9999999       999999999999986443

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-43  Score=327.88  Aligned_cols=189  Identities=43%  Similarity=0.722  Sum_probs=179.8

Q ss_pred             ceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHH
Q psy504           34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQI  113 (358)
Q Consensus        34 ~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~  113 (358)
                      +++.+.++++.++||++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|.|++.+........
T Consensus         2 ~~~~~~~l~~~~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~   81 (266)
T d1hzda_           2 DELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEV   81 (266)
T ss_dssp             CSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHH
T ss_pred             CcceEEEEEEecCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhh
Confidence            46788888888899999999999999999999999999999999999999999999996789999999999988887777


Q ss_pred             HHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHH
Q psy504          114 RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA  193 (358)
Q Consensus       114 ~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~  193 (358)
                      ..+...++.++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        82 ~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~  161 (266)
T d1hzda_          82 GPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAK  161 (266)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             hhhhhHHHHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHH
Confidence            78888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccccccchhhHhcCCceEEEecCCc
Q psy504          194 LYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       194 ~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      +++  ++|+.++|       ++|+++|||++++++.+.
T Consensus       162 ~l~--ltg~~~~a-------~eA~~~Glv~~vv~~~~l  190 (266)
T d1hzda_         162 ELI--FSARVLDG-------KEAKAVGLISHVLEQNQE  190 (266)
T ss_dssp             HHH--HHTCEEEH-------HHHHHHTSCSEEECCCTT
T ss_pred             hhh--ccCCccCH-------HHhhcccccccccChhhh
Confidence            999  99999999       999999999999987654

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-42  Score=317.09  Aligned_cols=204  Identities=18%  Similarity=0.247  Sum_probs=171.2

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH----HHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ----IRSFVST  119 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~----~~~~~~~  119 (358)
                      ++++|++|+||||+++|++|.+|+.+|.++++.++.|+.+ +||++|. |++||+|+|++++.......    .......
T Consensus         9 ~~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   86 (245)
T d2f6qa1           9 SEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGN-GDYYSSGNDLTNFTDIPPGGVEEKAKNNAVL   86 (245)
T ss_dssp             EETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEES-TTCSBCCBCC----CCCTTHHHHHHHHHHHH
T ss_pred             EECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCC-CccccCCccchhhhcccccccccccchhhhH
Confidence            4789999999999999999999999999999999999887 8999998 89999999999987654322    3344556


Q ss_pred             HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      +++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++  +
T Consensus        87 ~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~l~--l  164 (245)
T d2f6qa1          87 LREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEML--I  164 (245)
T ss_dssp             HHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHH--T
T ss_pred             HHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhhhhc--c
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccc
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN  258 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~  258 (358)
                      +|++++|       ++|+++|||+++++..+...+...+.......++......|+++.
T Consensus       165 ~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~  216 (245)
T d2f6qa1         165 FGKKLTA-------GEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIR  216 (245)
T ss_dssp             TCCCEEH-------HHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccccccc-------ccccccccccccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999       999999999999987665555444443333444443333444443

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-42  Score=322.30  Aligned_cols=178  Identities=19%  Similarity=0.186  Sum_probs=162.5

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-----------HH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-----------DQ  112 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-----------~~  112 (358)
                      .+|+|++|+||||+++|++|.+|+.+|.++++.+++|+++++|||+|. |++||+|+|++++.....           ..
T Consensus        11 ~~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~   89 (266)
T d1pjha_          11 IEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDDTNKYPSETSKW   89 (266)
T ss_dssp             EETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCCBCHHHHHC-------CCSSHHHHH
T ss_pred             EECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecc-ccccccchhHHHHHhccccccccccchhhHH
Confidence            479999999999999999999999999999999999999999999999 899999999999865432           12


Q ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEc-CCeEEeecceecccccCcccccccccccchhh
Q psy504          113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPL  191 (358)
Q Consensus       113 ~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~rias-e~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~  191 (358)
                      ...+......++..+.++|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|+|++|..+
T Consensus        90 ~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~r~~g~~~  169 (266)
T d1pjha_          90 VSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNT  169 (266)
T ss_dssp             HHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccccccccccch
Confidence            34566677889999999999999999999999999999999999996 56899999999999999999999999999999


Q ss_pred             HHhhhhhhcccccccccccccchhhHhcCCceEEEecCCc
Q psy504          192 AALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ  231 (358)
Q Consensus       192 A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~  231 (358)
                      |++++  +||+.++|       ++|+++|||++|++..+.
T Consensus       170 a~~ll--ltg~~~~a-------~eA~~~Glv~~v~~~~~~  200 (266)
T d1pjha_         170 TYECL--MFNKPFKY-------DIMCENGFISKNFNMPSS  200 (266)
T ss_dssp             HHHHH--HTTCCEEH-------HHHHHTTCCSEECCCCTT
T ss_pred             hhhhh--ccCCcCCH-------HHHHHCCCEeEeeCchhh
Confidence            99999  99999999       999999999999976543

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.8e-42  Score=321.93  Aligned_cols=209  Identities=24%  Similarity=0.259  Sum_probs=179.1

Q ss_pred             EEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc--CHHHHHHH
Q psy504           39 YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSF  116 (358)
Q Consensus        39 ~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~--~~~~~~~~  116 (358)
                      ..++..++||++|+| ||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++...  ..+....+
T Consensus        11 i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~   88 (263)
T d1wz8a1          11 LAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFGLIEEMRASHEALLRV   88 (263)
T ss_dssp             EEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEG-GGCCBCCBCHHHHHHHHHCHHHHHHH
T ss_pred             EEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecc-cccccccchhhhhhhhcccccccccc
Confidence            445556789999999 8999999999999999999999999999999999999 7999999999988653  34456677


Q ss_pred             HHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhh
Q psy504          117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE  196 (358)
Q Consensus       117 ~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll  196 (358)
                      ....++++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|..+|++++
T Consensus        89 ~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~~l~  168 (263)
T d1wz8a1          89 FWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHL  168 (263)
T ss_dssp             HHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHH
T ss_pred             hhhhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence            77888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccc
Q psy504          197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN  258 (358)
Q Consensus       197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~  258 (358)
                        ++|++++|       ++|+++|||++++++.+.......+.......++......|+++.
T Consensus       169 --l~g~~i~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~al~~~K~~l~  221 (263)
T d1wz8a1         169 --LLNEPLTG-------EEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKHALN  221 (263)
T ss_dssp             --HHTCCEEH-------HHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             --ccccccch-------hHHHhcCCcccccchhhhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence              99999999       999999999999987655444444433323333333333333333

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=3e-41  Score=320.88  Aligned_cols=191  Identities=32%  Similarity=0.464  Sum_probs=170.9

Q ss_pred             EEeeeecCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHH
Q psy504           39 YHNSPERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIR  114 (358)
Q Consensus        39 ~~l~~~~~~V~~Itln-rp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~  114 (358)
                      ..++..++||++|+|| +|++.|+||.+|+.+|.++++.++.|+++++|||||. |+.||+|+|++++...   ...+..
T Consensus         8 i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~   86 (310)
T d1wdka4           8 ITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSG-KDVFIVGADITEFVENFKLPDAELI   86 (310)
T ss_dssp             EEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSSSBBCCCHHHHHHHTTSCHHHHH
T ss_pred             EEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccchhhhhhhhhcccccchhhh
Confidence            4455668899999998 7999999999999999999999999999999999998 8999999999988543   233344


Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHh
Q psy504          115 SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAAL  194 (358)
Q Consensus       115 ~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~  194 (358)
                      .....+++++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|++
T Consensus        87 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~a~~  166 (310)
T d1wdka4          87 AGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVE  166 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             hhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhhhhh
Confidence            44556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504          195 YEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI  239 (358)
Q Consensus       195 ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~  239 (358)
                      ++  ++|+++++       ++|+++|||+++++..+.......+.
T Consensus       167 ll--l~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a  202 (310)
T d1wdka4         167 WI--ASGKENRA-------EDALKVSAVDAVVTADKLGAAALDLI  202 (310)
T ss_dssp             HH--HHCCCEEH-------HHHHHTTSSSEEECGGGHHHHHHHHH
T ss_pred             hh--ccccccCH-------HHHhhccCccEEccHHHHHHHHHHHH
Confidence            99  99999999       99999999999998766544444443

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1e-41  Score=314.54  Aligned_cols=187  Identities=22%  Similarity=0.295  Sum_probs=171.5

Q ss_pred             eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHH
Q psy504           42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR  121 (358)
Q Consensus        42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~  121 (358)
                      .+.++||++||||||+ .|+||.+|+.+|.++++.+++|+++++|||+|.|+++||+|+|++++..........+...++
T Consensus         8 ~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~   86 (249)
T d1sg4a1           8 PDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQ   86 (249)
T ss_dssp             EETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHH
T ss_pred             EECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccccchhhH
Confidence            3447889999999996 699999999999999999999999999999998567899999999998878778888889999


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEE--eecceecccccCcccccccccccchhhHHhhhhhh
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM--GLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL  199 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f--~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l  199 (358)
                      +++.++.++|||+||+|||+|+|||++|+++||+||++++++|  ++||+++|++|++|++++|++++|..+|++++  +
T Consensus        87 ~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ll--l  164 (249)
T d1sg4a1          87 ELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERAL--Q  164 (249)
T ss_dssp             HHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHH--H
T ss_pred             HHHHhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccccccc--c
Confidence            9999999999999999999999999999999999999999876  78999999999999999999999999999999  9


Q ss_pred             cccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      +|+++++       ++|+++|||+++++..+.......+
T Consensus       165 ~g~~~~a-------~~A~~~Glv~~v~~~~~l~~~a~~~  196 (249)
T d1sg4a1         165 LGLLFPP-------AEALQVGIVDQVVPEEQVQSTALSA  196 (249)
T ss_dssp             HTCCBCH-------HHHHHHTSSSEEECGGGHHHHHHHH
T ss_pred             ccccccH-------HHHHhhccccccCChHHHHHHHHHH
Confidence            9999999       9999999999999865544433333

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-41  Score=312.43  Aligned_cols=205  Identities=18%  Similarity=0.275  Sum_probs=174.2

Q ss_pred             eecCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH----HHHHHHH
Q psy504           43 PERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE----DQIRSFV  117 (358)
Q Consensus        43 ~~~~~V~~Itln-rp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~----~~~~~~~  117 (358)
                      +.+++|++|++| ||+++|+||.+|+.+|.++++.++.| ++++|||||. |+.||+|+|++++.....    ....++.
T Consensus         7 ~~~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~   84 (258)
T d2fw2a1           7 KKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAA-GSVFCCGLDFGYFVRHLRNDRNTASLEMV   84 (258)
T ss_dssp             EEETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEEC-SSCSBCCBCHHHHHHHHHHCHHHHHHHHH
T ss_pred             EEECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecC-ccccccccccchhhhcccccccchhhHHH
Confidence            347899999997 79999999999999999999999987 4699999999 799999999998864322    2244567


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      ..+++++..+.++|||+||+|||+|+|||++++++||+||++++++|++||+++|++|++|++++|+|++|..+|++|+ 
T Consensus        85 ~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~-  163 (258)
T d2fw2a1          85 DTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEML-  163 (258)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHH-
T ss_pred             HHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCccccchhh-
Confidence            7788999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccc
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN  258 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~  258 (358)
                       ++|++++|       ++|+++|+|+++++..+.......+.......++......|++++
T Consensus       164 -l~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~~~  216 (258)
T d2fw2a1         164 -IAGRKLTA-------REACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVR  216 (258)
T ss_dssp             -TTCCEEEH-------HHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             -ccCccccc-------ccccccccccccccccccccccchhhhhhhhhhHHHHHHHHHHHH
Confidence             99999999       999999999999987665544444443333344433333444433

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.9e-41  Score=310.39  Aligned_cols=200  Identities=24%  Similarity=0.290  Sum_probs=172.2

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHHHH
Q psy504           45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLR  121 (358)
Q Consensus        45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~~~  121 (358)
                      +|+|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||. |+.||+|+|++++...   .......+....+
T Consensus         6 ~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~-g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~   84 (253)
T d1uiya_           6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLM   84 (253)
T ss_dssp             CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             eCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecc-cccccccchhHHhhhccccCcccccchhhhhh
Confidence            47799999999999999999999999999999999999999999999 8999999999877543   3344556667788


Q ss_pred             HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504          122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN  201 (358)
Q Consensus       122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg  201 (358)
                      .++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|. |++++|++++|..+|++|+  |+|
T Consensus        85 ~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~--l~g  161 (253)
T d1uiya_          85 RLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLL--LTG  161 (253)
T ss_dssp             HHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHH--HHC
T ss_pred             hhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHHHHHHHh--hcC
Confidence            8999999999999999999999999999999999999999999999999998775 5678999999999999999  999


Q ss_pred             cccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccc
Q psy504          202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFS  255 (358)
Q Consensus       202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~  255 (358)
                      +++++       ++|+++|+|++|++..+.......+.......+.......|+
T Consensus       162 ~~~~a-------~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K~  208 (253)
T d1uiya_         162 RLVEA-------REAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKE  208 (253)
T ss_dssp             CEEEH-------HHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             cCCCH-------HHHHHhCCCcccccccccchhHHHHHHhhcccchHHHHHHHH
Confidence            99999       999999999999987765555555544333444333333333

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=3.5e-41  Score=314.08  Aligned_cols=186  Identities=25%  Similarity=0.329  Sum_probs=166.6

Q ss_pred             eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHH-----HHHHHH
Q psy504           43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED-----QIRSFV  117 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~-----~~~~~~  117 (358)
                      +.+++|++||||||++.|+||.+|+.+|.++++.+++|+++++|||||. |+.||+|+|++++......     ......
T Consensus         8 ~i~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   86 (269)
T d1nzya_           8 RVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAGVRDHFRIAA   86 (269)
T ss_dssp             EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSCSSSHHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCC-cccccchhhHHHHhhcccccchhhHHHHHH
Confidence            4579999999999999999999999999999999999999999999999 7999999999998654332     123344


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED  197 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~  197 (358)
                      ..++.++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|+.|++|+++++++++|..+|++++ 
T Consensus        87 ~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~a~~l~-  165 (269)
T d1nzya_          87 LWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELM-  165 (269)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhhhhhcc-
Confidence            5567899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                       +||+.++|       ++|+++|||+++++..+.......+
T Consensus       166 -ltg~~i~a-------~eA~~~Glv~~vv~~~~l~~~a~~~  198 (269)
T d1nzya_         166 -LTNRTLYP-------EEAKDWGLVSRVYPKDEFREVAWKV  198 (269)
T ss_dssp             -HHCCCBCH-------HHHHHHTSCSCEECHHHHHHHHHHH
T ss_pred             -ccccccch-------hHHHHcCCccccccccccccchhhh
Confidence             99999999       9999999999999764433333333

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-41  Score=314.09  Aligned_cols=185  Identities=21%  Similarity=0.373  Sum_probs=161.5

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeec-CCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL-VKDVFCAGADLKHRLTLNEDQIRSFVSTLRY  122 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~-gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~  122 (358)
                      .+|+|++|+||||+++|+||.+|+.+|.+++++++ ++++++|||+|. |+++||+|+|++++.....+. ..+...+++
T Consensus        10 ~~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~   87 (261)
T d1ef8a_          10 TINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDP-LSYDDPLRQ   87 (261)
T ss_dssp             EETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----CT-TCTTSHHHH
T ss_pred             EECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCccc-cccccchhh
Confidence            48999999999999999999999999999999997 457999999985 468999999999986543222 233456778


Q ss_pred             HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504          123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND  202 (358)
Q Consensus       123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~  202 (358)
                      ++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|..+|++++  ++|+
T Consensus        88 ~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~a~~~~--l~g~  165 (261)
T d1ef8a_          88 ITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELI--FTAS  165 (261)
T ss_dssp             HHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHH--HHCC
T ss_pred             hHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCcccccccc--ccCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             ccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504          203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI  239 (358)
Q Consensus       203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~  239 (358)
                      .+++       ++|+++|||+++++..+.......+.
T Consensus       166 ~~~a-------~eA~~~Glv~~vv~~~~~~~~a~~~a  195 (261)
T d1ef8a_         166 PITA-------QRALAVGILNHVVEVEELEDFTLQMA  195 (261)
T ss_dssp             CEEH-------HHHHHTTSCSEEECHHHHHHHHHHHH
T ss_pred             eEcH-------HHHHHcCCcceeeechhhhhhhHHHH
Confidence            9999       99999999999997655444333333

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=2.9e-40  Score=304.74  Aligned_cols=191  Identities=18%  Similarity=0.215  Sum_probs=172.0

Q ss_pred             eEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHH
Q psy504           36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRS  115 (358)
Q Consensus        36 ~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~  115 (358)
                      |+.+.++ ++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||. |++||+|.|++++.....+...+
T Consensus        12 y~~i~~~-~~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~   89 (249)
T d1szoa_          12 YENIRLE-RDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTPHDWDE   89 (249)
T ss_dssp             CTTEEEE-EETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCEECGGGSCCSSHHHHHH
T ss_pred             CCeEEEE-EECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecc-cccccccchhhhhhcccccchhh
Confidence            3334443 478999999999999999999999999999999999999999999999 79999999999998878888888


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEe-ecceecccccCcccccccccccchhhHHh
Q psy504          116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG-LVETKLAIIPGAGGTQRLPRIVGIPLAAL  194 (358)
Q Consensus       116 ~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~-~pe~~lGl~p~~g~s~~L~r~iG~~~A~~  194 (358)
                      +...++.++.++.++|||+||++||.|. ||++|+++||+||++++++|. +||.++|++|++|++++|+|++|..+|++
T Consensus        90 ~~~~~~~l~~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~a~~  168 (249)
T d1szoa_          90 IIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRY  168 (249)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHH
T ss_pred             hhhhhhhhhhhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeeccccccccccccccccccccCccceee
Confidence            8888999999999999999999999885 577999999999999999995 79999999999999999999999999999


Q ss_pred             hhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504          195 YEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL  238 (358)
Q Consensus       195 ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l  238 (358)
                      ++  |+|+++++       ++|+++|||++++++.+......++
T Consensus       169 l~--ltg~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~  203 (249)
T d1szoa_         169 FL--LTGQELDA-------RTALDYGAVNEVLSEQELLPRAWEL  203 (249)
T ss_dssp             HH--HTTCEEEH-------HHHHHHTSCSEEECHHHHHHHHHHH
T ss_pred             ec--ccCCCCCH-------HHHHHhCCcCcccCHHHHHHHHHHH
Confidence            99  99999999       9999999999999865443333333

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-40  Score=311.34  Aligned_cols=182  Identities=24%  Similarity=0.423  Sum_probs=162.1

Q ss_pred             EEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC-------HH
Q psy504           39 YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-------ED  111 (358)
Q Consensus        39 ~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~-------~~  111 (358)
                      ..+++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||. ++.||+|+|+.++....       ..
T Consensus         5 l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~-~~~F~aG~dl~~~~~~~~~~~~~~~~   83 (275)
T d1dcia_           5 IQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVA   83 (275)
T ss_dssp             EEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCHHHHHHHHTSCCCSSHH
T ss_pred             EEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecc-ccccccCccHHHhhhccccccccccc
Confidence            34455678999999999999999999999999999999999999999999998 89999999998875321       11


Q ss_pred             ----HHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCccccccccccc
Q psy504          112 ----QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIV  187 (358)
Q Consensus       112 ----~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~i  187 (358)
                          ....+...++.++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~~~  163 (275)
T d1dcia_          84 RIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVI  163 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTC
T ss_pred             chhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccccccc
Confidence                1234455677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhh-HHhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504          188 GIPL-AALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS  230 (358)
Q Consensus       188 G~~~-A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~  230 (358)
                      |... +++++  ++|+.+++       ++|+++|||++|+++.+
T Consensus       164 g~~~~~~~ll--~~g~~~~a-------~eA~~~Glv~~v~~~~~  198 (275)
T d1dcia_         164 GNRSLVNELT--FTARKMMA-------DEALDSGLVSRVFPDKD  198 (275)
T ss_dssp             SCHHHHHHHH--HHCCEEEH-------HHHHHHTSSSEEESSHH
T ss_pred             cccccccccc--ccccccch-------hhhccCCCceeeeehhh
Confidence            9665 46788  99999999       99999999999997644

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.6e-39  Score=305.50  Aligned_cols=206  Identities=20%  Similarity=0.226  Sum_probs=161.5

Q ss_pred             ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeec------CCCceecCCCchhccccCHH------
Q psy504           44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL------VKDVFCAGADLKHRLTLNED------  111 (358)
Q Consensus        44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~------gg~~FsaG~Dl~~~~~~~~~------  111 (358)
                      .+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.      ||+.||+|.|++........      
T Consensus        26 ~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~~~~~~  105 (297)
T d1q52a_          26 VDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDT  105 (297)
T ss_dssp             SSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----------------
T ss_pred             ccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcccccccccccc
Confidence            478999999999999999999999999999999999999999999997      35678888888765432111      


Q ss_pred             -----HHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC-eEEeecceecccccCccccccccc
Q psy504          112 -----QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPR  185 (358)
Q Consensus       112 -----~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~pe~~lGl~p~~g~s~~L~r  185 (358)
                           ........+..+...+..+|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|+|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p~~~~~~~L~r  185 (297)
T d1q52a_         106 ADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLAR  185 (297)
T ss_dssp             ------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCCCSTTTHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccccccccccccccc
Confidence                 11223344667888999999999999999999999999999999999865 589999999999999999999999


Q ss_pred             ccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccc
Q psy504          186 IVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN  258 (358)
Q Consensus       186 ~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~  258 (358)
                      ++|.++|++++  +||+.+++       ++|+++|||+++++..+.......+.......++......|.+++
T Consensus       186 ~iG~~~a~~ll--ltg~~~~a-------~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~~~~K~~~~  249 (297)
T d1q52a_         186 QVGQKFAREIF--FLGRTYTA-------EQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLKFAFN  249 (297)
T ss_dssp             HHCHHHHHHHH--HHCCEECH-------HHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             ccCccceeecc--ccccccch-------HhhhhhccccccCchHHhhHHHHHHhhhhccCCHHHHHHHHHHHH
Confidence            99999999999  99999999       999999999999987665444444433333333333333333333

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.0018  Score=57.52  Aligned_cols=156  Identities=13%  Similarity=0.199  Sum_probs=95.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |+++-.|.-=..-+++....+.+.++.+.+.+..-. .|.++-.      .|..+.+-.    .. ...+.........+
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~lP-lI~~~~s------gG~r~~e~~----~s-l~~~~~~~~~~~~~  165 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCP-LICFSAS------GGARMQEAL----MS-LMQMAKTSAALAKM  165 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHTCC-EEEEEEE------SSBCGGGTH----HH-HHHHHHHHHHHHHH
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHcCCC-eEEEecC------CCccccccc----ch-hhcchhHHHHHHHH
Confidence            555555554466789999999999999998876543 4555443      245554311    11 11222233334455


Q ss_pred             HcCCCcEEEeeccccccCCc-eeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccccc
Q psy504          128 ESIPVPVLAVLDGSAYGGGL-EMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSS  206 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~-~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a  206 (358)
                      .....|+|+++.|+|.||+. .+++++|++++.+.+.+++.-               |+.+      +.   .+|+.++.
T Consensus       166 ~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aG---------------P~vv------e~---~~ge~~~e  221 (263)
T d2f9yb1         166 QERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAG---------------PRVI------EQ---TVREKLPP  221 (263)
T ss_dssp             HHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSC---------------HHHH------HH---HHTSCCCT
T ss_pred             HhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccC---------------HHHH------hh---hcCCcCCh
Confidence            56789999999999999875 578888999988887665531               1111      11   33444431


Q ss_pred             ccccccchhhHhcCCceEEEecCCccHHHHHHHHh
Q psy504          207 LDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVW  241 (358)
Q Consensus       207 ~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~  241 (358)
                        +...++..++.|.|+.++.+.++...+.++...
T Consensus       222 --~~g~a~~~~~~G~iD~vv~~ee~~~~l~~~l~~  254 (263)
T d2f9yb1         222 --GFQRSEFLIEKGAIDMIVRRPEMRLKLASILAK  254 (263)
T ss_dssp             --TTTBHHHHGGGTCCSEECCHHHHHHHHHHHHHH
T ss_pred             --hhccHHHHHhCCCCCEEECCHHHHHHHHHHHHH
Confidence              122235556789999988665555555554443

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00016  Score=61.04  Aligned_cols=89  Identities=13%  Similarity=0.108  Sum_probs=66.5

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCce--EEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504           62 LNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD  139 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d~~vr--vVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn  139 (358)
                      ++.++..++...+..++.++..+  .+.|.+.       |+|+.               ....+...+..++.|+...+.
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~-------GG~v~---------------~g~~i~d~i~~~~~~v~tv~~   82 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIYLYINSP-------GGVIT---------------AGMSIYDTMQFIKPDVSTICM   82 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC-------CBCHH---------------HHHHHHHHHHHSSSCEEEEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceEEEEeCC-------CccHH---------------HHHHHHHHHHhCCCCEEEEEE
Confidence            67888999888888776433222  3444554       44442               234467788889999999999


Q ss_pred             cccccCCceeecccc--EEEEcCCeEEeecceecc
Q psy504          140 GSAYGGGLEMALACD--IRVAASNVRMGLVETKLA  172 (358)
Q Consensus       140 G~a~GgG~~lal~cD--~riase~a~f~~pe~~lG  172 (358)
                      |.|.+.|.-+.++||  .|++.++++|-+-+...|
T Consensus        83 G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~  117 (183)
T d1yg6a1          83 GQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGG  117 (183)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEE
T ss_pred             EEeHHHHHHHHHcCCCCceeeCCCceEEecccccc
Confidence            999999999988888  799999999988666544

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.09  E-value=0.0003  Score=59.06  Aligned_cols=89  Identities=12%  Similarity=0.145  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHHHHHHHcC---CCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           62 LNATLVEEILTAVEAIRGD---EEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d---~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      ++.++..++...+..++.+   +.+ -+.|.+.       |+|+..               ...+...+..++.|+...+
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I-~l~InS~-------GG~v~~---------------gl~i~d~i~~~~~~v~t~~   78 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDI-SLYINSP-------GGSISA---------------GMAIYDTMVLAPCDIATYA   78 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCE-EEEEEEC-------CBCHHH---------------HHHHHHHHHHCSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeE-EEEeeCC-------CCCHHH---------------HHHHHHHHHhhccceeeeh
Confidence            6888899988877555432   233 3445555       444322               2345677788999999999


Q ss_pred             ccccccCCceeecccc--EEEEcCCeEEeecceeccc
Q psy504          139 DGSAYGGGLEMALACD--IRVAASNVRMGLVETKLAI  173 (358)
Q Consensus       139 nG~a~GgG~~lal~cD--~riase~a~f~~pe~~lGl  173 (358)
                      .|.|.+.|.-+++++|  .|++.++++|-+-+...|.
T Consensus        79 ~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~  115 (179)
T d2cbya1          79 MGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV  115 (179)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----
T ss_pred             hhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhc
Confidence            9999999999999999  8999999999887665443

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00049  Score=62.79  Aligned_cols=138  Identities=12%  Similarity=0.060  Sum_probs=98.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504           60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD  139 (358)
Q Consensus        60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn  139 (358)
                      -+++++.++.-.+.++.++.-. +=+|-|.=+ +++++ |.+-         +.....+.+.+++..+..+++|+|+.|-
T Consensus       130 G~~~p~~~rKa~r~~~~a~~~~-~Pii~~vDt-pG~~~-g~~~---------E~~g~~~~~a~~~~~~~~~~vP~i~vv~  197 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAERFK-MPIITFIDT-PGAYP-GVGA---------EERGQSEAIARNLREMSRLGVPVVCTVI  197 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEE-SCSCC-SHHH---------HHTTHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             ccccHHHHHHHHHHHHHHHHcC-cceEEEEec-CcccC-Cccc---------ccccHHHHHHHHHHHHHhCCCceEEEEE
Confidence            3578889999888888887653 445555444 33333 3322         2334456677788899999999999999


Q ss_pred             cccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHhc
Q psy504          140 GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRR  219 (358)
Q Consensus       140 G~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~  219 (358)
                      |.+.|||.-....+|.+++.++++++.      +.|.++++..+...--...|.+.+      .+++       .+.++.
T Consensus       198 g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAeal------klta-------~dL~~l  258 (316)
T d2f9ya1         198 GEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEAM------GIIR-------PRLKEL  258 (316)
T ss_dssp             EEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHHH------TCSH-------HHHHTT
T ss_pred             hhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHHHH------hhhh-------HHHHHc
Confidence            999999987777899999999999984      357776766654433333333333      4667       889999


Q ss_pred             CCceEEEec
Q psy504          220 GLVVTLVIK  228 (358)
Q Consensus       220 GLv~~vv~~  228 (358)
                      |+|++|++.
T Consensus       259 giIDeII~E  267 (316)
T d2f9ya1         259 KLIDSIIPE  267 (316)
T ss_dssp             TSCSCCCCC
T ss_pred             CchhhcccC
Confidence            999999964

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.87  E-value=0.00084  Score=56.89  Aligned_cols=89  Identities=10%  Similarity=0.133  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHHHHHHHcC-C--CceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           62 LNATLVEEILTAVEAIRGD-E--EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d-~--~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      ++.++...+...+..++.+ +  .+ -+.|.+.       |+|+..               ...++..+..++.|+...+
T Consensus        33 I~~~~~~~~~~~l~~l~~~~~~~~I-~l~InS~-------GG~v~~---------------glai~d~i~~~~~~v~t~~   89 (192)
T d1y7oa1          33 VEDNMANSVIAQLLFLDAQDSTKDI-YLYVNTP-------GGSVSA---------------GLAIVDTMNFIKADVQTIV   89 (192)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCE-EEEEEEC-------CBCHHH---------------HHHHHHHHHHSSSCEEEEE
T ss_pred             EchHHHHHHHHHHHHhhhhcccCce-eeeecCC-------CCCHHH---------------HHHHHHHHHhcCcceEEEe
Confidence            6888888888887766532 2  33 3455665       334321               2345778888999999999


Q ss_pred             ccccccCCceeecc--ccEEEEcCCeEEeecceeccc
Q psy504          139 DGSAYGGGLEMALA--CDIRVAASNVRMGLVETKLAI  173 (358)
Q Consensus       139 nG~a~GgG~~lal~--cD~riase~a~f~~pe~~lGl  173 (358)
                      .|.|.+.|.-++++  +|.|++.++++|-+-+...|.
T Consensus        90 ~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~  126 (192)
T d1y7oa1          90 MGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGT  126 (192)
T ss_dssp             EEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---
T ss_pred             ccccCCccceeeeecCCCccccchHHHHHhhcccccc
Confidence            99999998887665  579999999999988776654

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.73  E-value=0.004  Score=54.85  Aligned_cols=106  Identities=14%  Similarity=0.143  Sum_probs=70.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |+++-.|.--+.-+++....+.+.++.+.+.+..-.-+.++.|.       |..+.+-    ........+.+..+ ..+
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~lPlV~l~~sg-------G~r~~eg----~~~l~~~~~~~~~~-~~l  158 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSG-------GARIQEG----IDSLSGYGKMFFAN-VKL  158 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEEC-------SBCGGGT----HHHHHHHHHHHHHH-HHH
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhcCCCeEEEEecC-------CCccccc----ceeccccceehHHH-HHH
Confidence            55555555556678999999999999999987654433333433       4444431    11111121222222 233


Q ss_pred             HcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEee
Q psy504          128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL  166 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~  166 (358)
                      . -..|+|+++.|+|.||+.....+||++++.+++.+++
T Consensus       159 s-~~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~  196 (253)
T d1on3a1         159 S-GVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFI  196 (253)
T ss_dssp             T-TTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEES
T ss_pred             h-ccceEEEEEecCcccceeeccchhhheeccccceEEe
Confidence            3 3589999999999999999999999999998776655

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.48  E-value=0.0014  Score=55.35  Aligned_cols=89  Identities=10%  Similarity=0.089  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHHHHHHcC--CCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504           62 LNATLVEEILTAVEAIRGD--EEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD  139 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d--~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn  139 (358)
                      ++.++..++...+..++..  +.+ -+.|.+.       |+|+.               ....++..+..++.|+...+.
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I-~l~INS~-------GG~v~---------------~g~ai~d~i~~~~~~v~tv~~   83 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDI-KIYINSP-------GGSIN---------------EGLAILDIFNYIKSDIQTISF   83 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCE-EEEEEEC-------CBCHH---------------HHHHHHHHHHHSSSCEEEEEE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCe-EEEEeCc-------hhhhh---------------HHHHHHHHHHhhCCceEEEEe
Confidence            6888888988888777542  333 3445555       44442               233456677889999999999


Q ss_pred             cccccCCceeecccc--EEEEcCCeEEeecceeccc
Q psy504          140 GSAYGGGLEMALACD--IRVAASNVRMGLVETKLAI  173 (358)
Q Consensus       140 G~a~GgG~~lal~cD--~riase~a~f~~pe~~lGl  173 (358)
                      |.|.+.|.-+++++|  .|++.++++|-+.+...|.
T Consensus        84 G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~  119 (190)
T d2f6ia1          84 GLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNA  119 (190)
T ss_dssp             EEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSC
T ss_pred             ccccchhHHHHHhCCCCccccCCCcEEEEccccccc
Confidence            999999999999988  6999999999988776554

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.30  E-value=0.022  Score=49.88  Aligned_cols=101  Identities=15%  Similarity=0.207  Sum_probs=65.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |+++..|.--..-+++....+.+.++.+.+.+..-. +|.+...      +|..+.+-.    .......+ ..... ..
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~~P-~I~~~ds------gG~r~~e~~----~~l~~~~~-~~~~~-~~  154 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIP-VIGINDS------GGARIQEGV----DALAGYGE-IFLRN-TL  154 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCC-EEEEEEE------CSBCGGGTH----HHHHHHHH-HHHHH-HH
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHcCCC-EEEEEcC------CCccccccc----cccccchH-HHHHH-HH
Confidence            555555544466788999999999999988766543 4444442      255554311    11111111 11112 23


Q ss_pred             HcCCCcEEEeeccccccCCceeeccccEEEEcCC
Q psy504          128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN  161 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~~lal~cD~riase~  161 (358)
                      ..-..|+|+++.|+|.||+.....+||++|+.++
T Consensus       155 ~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~  188 (251)
T d1vrga1         155 ASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQ  188 (251)
T ss_dssp             HTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETT
T ss_pred             HCCCCCEEEEEccCccccceehhhhCceEEEEcc
Confidence            3457999999999999999999999999998754

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=96.26  E-value=0.0029  Score=53.52  Aligned_cols=89  Identities=12%  Similarity=0.157  Sum_probs=65.3

Q ss_pred             CCHHHHHHHHHHHHHHHcC---CCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504           62 LNATLVEEILTAVEAIRGD---EEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL  138 (358)
Q Consensus        62 l~~~m~~eL~~~l~~~~~d---~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  138 (358)
                      ++.++..++...+..++..   ..+. +.|.+.       |+|+.               ....++..+..++.|+...+
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~-------GG~v~---------------~g~~i~d~i~~~~~~V~tv~   91 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPIH-MYINSP-------GGVVT---------------AGLAIYDTMQYILNPICTWC   91 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEEC-------CBCHH---------------HHHHHHHHHHHSCSCEEEEE
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEEE-EEeecC-------cccHH---------------HHHHHHHHHHhhcCceEEEE
Confidence            5778888888777666532   3343 444665       33322               22345778888999999999


Q ss_pred             ccccccCCceeecccc--EEEEcCCeEEeecceeccc
Q psy504          139 DGSAYGGGLEMALACD--IRVAASNVRMGLVETKLAI  173 (358)
Q Consensus       139 nG~a~GgG~~lal~cD--~riase~a~f~~pe~~lGl  173 (358)
                      .|.|.+.|.-+.+++|  .|++.++++|-+-+...|.
T Consensus        92 ~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~  128 (193)
T d1tg6a1          92 VGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA  128 (193)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC
T ss_pred             ccchHHHHHHHhhcCccCccccCcccHHHhcCCccCC
Confidence            9999999999999998  6999999999887765553

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.21  E-value=0.0059  Score=54.75  Aligned_cols=111  Identities=13%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             eecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchh----ccccCHHHHHHHH
Q psy504           43 PERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH----RLTLNEDQIRSFV  117 (358)
Q Consensus        43 ~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~----~~~~~~~~~~~~~  117 (358)
                      ..++.-..|.-|.+. +.-+++....+.+.++++.+.+..-. +|.|.-+ +     |+.+.+    +....     ...
T Consensus       100 ~i~G~~v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~lP-~I~l~ds-~-----Ga~~~~~~e~~~~~~-----~~g  167 (287)
T d1pixa2         100 RVNGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVP-LVYVLNC-S-----GVKFDEQEKVYPNRR-----GGG  167 (287)
T ss_dssp             EETTEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHTCC-EEEEECC-C-----EECGGGHHHHSSSTT-----STT
T ss_pred             ecccceEEEEEeccccccccchhhHHHHHHHHHHhhhhcCCC-EEEEecC-C-----cccCCcchhhccchh-----hHH
Confidence            334443334444444 45688889999999998888766543 4444332 2     333321    11100     011


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEee
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL  166 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~  166 (358)
                      +.+.. ...+....+|+|++|-|.|.|||...+++||++++.+++.+.+
T Consensus       168 ~~~~~-~a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~  215 (287)
T d1pixa2         168 TPFFR-NAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAV  215 (287)
T ss_dssp             HHHHH-HHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEES
T ss_pred             HHHHH-HHHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEE
Confidence            11111 2345567899999999999999988888888888888887776

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.98  E-value=0.017  Score=50.84  Aligned_cols=106  Identities=13%  Similarity=0.176  Sum_probs=67.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504           48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL  127 (358)
Q Consensus        48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i  127 (358)
                      |+++..|..-+.-+++....+.+.++.+.+.+..- =.|.|.-.      .|+.+.+-.    ...... ........ .
T Consensus        90 v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~l-PlI~l~ds------gGarm~e~~----~~~~~~-~~~~~~~~-~  156 (258)
T d1xnya1          90 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGC-PVVGINDS------GGARIQEGV----ASLGAY-GEIFRRNT-H  156 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTC-CEEEEECC------CSBCGGGTH----HHHHHH-HHHHHHHH-H
T ss_pred             EEEEechhhhhcCccchhhHHHHHHHHHHHHHcCC-ceEEEecC------CCcccCccc----ccccch-hHHHHHHH-H
Confidence            55566665556778999999999999999987654 35555443      244443311    111111 11111122 2


Q ss_pred             HcCCCcEEEeeccccccCCceeeccccEEEEcC-CeEEee
Q psy504          128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGL  166 (358)
Q Consensus       128 ~~~~kPvIaavnG~a~GgG~~lal~cD~riase-~a~f~~  166 (358)
                      .....|+|+++.|+|.||+.....+||++++.+ .+.+++
T Consensus       157 ~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~  196 (258)
T d1xnya1         157 ASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFI  196 (258)
T ss_dssp             TTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEES
T ss_pred             HcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEe
Confidence            234699999999999999999888888888765 555544

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.45  E-value=0.037  Score=48.56  Aligned_cols=108  Identities=16%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             cCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504           45 RPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM  123 (358)
Q Consensus        45 ~~~-V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l  123 (358)
                      ++. |.++..|..-+.-+++....+.+.++.+.+.++.-. +|.+.-      |+|..+.+-..    ..... ......
T Consensus        87 ~G~~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~lP-~I~l~d------sgGar~~eg~~----~~~~~-~~~~~~  154 (258)
T d2a7sa1          87 DGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRP-LIGIND------GAGARIQEGVV----SLGLY-SRIFRN  154 (258)
T ss_dssp             SSSEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCC-EEEEEC------CCSBCGGGCTH----HHHHH-HHHHHH
T ss_pred             ccceEEEecccceEeCCccchhhhhHHHHHHHHHHhcCCc-eEEEec------cCCcccccccc----cccch-hhHHHH
Confidence            444 555566655567789999999999999999876543 444433      22555543111    11111 112222


Q ss_pred             HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcC-CeEEe
Q psy504          124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMG  165 (358)
Q Consensus       124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase-~a~f~  165 (358)
                       ........|+|+++.|+|.||+......||++|+.+ .++++
T Consensus       155 -~~~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~  196 (258)
T d2a7sa1         155 -NILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMF  196 (258)
T ss_dssp             -HHHHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCB
T ss_pred             -HHHHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEE
Confidence             223356799999999999999999999999998864 45443

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.06  E-value=0.31  Score=42.60  Aligned_cols=116  Identities=18%  Similarity=0.271  Sum_probs=82.8

Q ss_pred             EEeeeecCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHH
Q psy504           39 YHNSPERPGIVELCMNRPQA-RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV  117 (358)
Q Consensus        39 ~~l~~~~~~V~~Itlnrp~~-~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~  117 (358)
                      .-+-+.+|.-.-|.-|+|.. ..+++.+......+.++.++.. ++=+|.|.-+ + .|..|.+.         +.....
T Consensus        62 tg~ari~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt-p-Gf~~G~~~---------E~~g~~  129 (271)
T d2a7sa2          62 VGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-P-GFLPGTDQ---------EYNGII  129 (271)
T ss_dssp             EEEEESSSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-C-CBCCCHHH---------HHHCHH
T ss_pred             EEEEEECCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech-h-hhhhhccH---------HHhhHH
Confidence            33445566644455566653 2589999999999999888764 5667777665 2 36666443         234466


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCce----eeccccEEEEcCCeEEee
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLE----MALACDIRVAASNVRMGL  166 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~----lal~cD~riase~a~f~~  166 (358)
                      +...+++.++..+.+|.|+.+-|.+.|+|..    -.+.+|+++|.+++.++.
T Consensus       130 ~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv  182 (271)
T d2a7sa2         130 RRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV  182 (271)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee
Confidence            7888899999999999999999999987643    223468888888887766

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=92.86  E-value=0.16  Score=44.35  Aligned_cols=117  Identities=14%  Similarity=0.200  Sum_probs=82.7

Q ss_pred             EEEeeeecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHH
Q psy504           38 IYHNSPERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSF  116 (358)
Q Consensus        38 ~~~l~~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~  116 (358)
                      +.-+-+..+...-+.-|+|. ...+++.+-.....+.++.++.. ++=.|.|.-+ + .|..|.+-+         ....
T Consensus        58 v~g~~r~~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-p-Gf~~G~~~E---------~~g~  125 (264)
T d1vrga2          58 VIGFARIQGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-P-GYLPGVAQE---------HGGI  125 (264)
T ss_dssp             EEEEEEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-C-CBCCCHHHH---------HTTH
T ss_pred             EEEEEEecCceEEEEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-c-cccccHHHH---------HHhH
Confidence            34445556654445556665 33579999999999999888764 4556777665 2 366664432         2346


Q ss_pred             HHHHHHHHHHHHcCCCcEEEeeccccccCCce-e---eccccEEEEcCCeEEee
Q psy504          117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLE-M---ALACDIRVAASNVRMGL  166 (358)
Q Consensus       117 ~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~-l---al~cD~riase~a~f~~  166 (358)
                      .+...+++.++.++.+|.|+.|=|.+.|+|.. +   ++.+|++++-+++.++.
T Consensus       126 ~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v  179 (264)
T d1vrga2         126 IRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV  179 (264)
T ss_dssp             HHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe
Confidence            67788899999999999999999999987652 2   22588888888877766

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.09  E-value=0.24  Score=43.23  Aligned_cols=115  Identities=17%  Similarity=0.236  Sum_probs=81.2

Q ss_pred             EeeeecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHH
Q psy504           40 HNSPERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVS  118 (358)
Q Consensus        40 ~l~~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~  118 (358)
                      -+-+.+|.-.-|.-|+|. ...+++.+......+.++.++.. ++=+|.|.-+ + .|..|.+-+         .....+
T Consensus        58 g~ari~G~~vgvia~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~-p-Gf~~G~~~E---------~~g~~~  125 (263)
T d1xnya2          58 GFGRVEGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV-P-GFLPGVDQE---------HDGIIR  125 (263)
T ss_dssp             EEEEETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-C-CBCCCHHHH---------HTTHHH
T ss_pred             eeeeeccceEEEEecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecc-c-ccccchhHH---------HHhHHH
Confidence            344455554444445554 33589999999999998888764 4557777665 2 366664432         334567


Q ss_pred             HHHHHHHHHHcCCCcEEEeeccccccCCceeec----cccEEEEcCCeEEee
Q psy504          119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMAL----ACDIRVAASNVRMGL  166 (358)
Q Consensus       119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal----~cD~riase~a~f~~  166 (358)
                      ...+++.++.++.+|.|+.|-|.+.|+|.....    ..|+++|.+++.++.
T Consensus       126 ~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv  177 (263)
T d1xnya2         126 RGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV  177 (263)
T ss_dssp             HHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc
Confidence            788899999999999999999999997654322    358888888887776

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=90.71  E-value=0.3  Score=42.56  Aligned_cols=116  Identities=18%  Similarity=0.206  Sum_probs=80.4

Q ss_pred             EEeeeecCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHH
Q psy504           39 YHNSPERPGIVELCMNRPQA-RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV  117 (358)
Q Consensus        39 ~~l~~~~~~V~~Itlnrp~~-~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~  117 (358)
                      .-+-+.+|.-.-|.=|+|.. ..+++.+-.....+.++.++. -++=+|.|.=+  ..|..|.+-+         .....
T Consensus        59 tg~ari~G~~vgvian~~~~~~G~~~~~~a~Kaarfi~lc~~-~~iPlv~l~D~--pGf~~G~~~E---------~~g~i  126 (264)
T d1on3a2          59 TAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDV--PGFLPGVQQE---------YGGII  126 (264)
T ss_dssp             EEEEEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE--CCBCCCHHHH---------HTTHH
T ss_pred             EEEEEEecceEEEEeccchhcccccChHHHHHHHHHHHHHHh-cCCceEEEecc--ccccccHHHH---------HHHHH
Confidence            33445555544444456653 467999999999998888876 45667777665  2366665432         34567


Q ss_pred             HHHHHHHHHHHcCCCcEEEeeccccccCCce-ee---ccccEEEEcCCeEEee
Q psy504          118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLE-MA---LACDIRVAASNVRMGL  166 (358)
Q Consensus       118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~-la---l~cD~riase~a~f~~  166 (358)
                      +...+++.++.++.+|.|+.+-|.+.|+|.. ++   ...|+++|-+++.++.
T Consensus       127 ~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~v  179 (264)
T d1on3a2         127 RHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAV  179 (264)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhhh
Confidence            7888899999999999999999999997642 22   2357777777666654

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.70  E-value=0.024  Score=51.51  Aligned_cols=88  Identities=10%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             CCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccc
Q psy504          130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDT  209 (358)
Q Consensus       130 ~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d  209 (358)
                      -..|+|++|.|+|+|+|+.++..||++|+.+++.+.+.           |...+-..+|....      .+.+.+.+   
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt-----------Gp~~l~~~lG~eVy------~s~~eLGG---  298 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT-----------GAPAINKMLGREVY------TSNLQLGG---  298 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS-----------CHHHHHHHSSSCCC------SCTHHHHS---
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEee-----------CHHHHHHhcCcccc------CChhHhCC---
Confidence            46999999999999999999999999999988765443           11222232332210      01111111   


Q ss_pred             cccchhhHhcCCceEEEecCCccHHHHHHHHhh
Q psy504          210 RYMWCTPYRRGLVVTLVIKFSQPVHISALIVWN  242 (358)
Q Consensus       210 ~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n  242 (358)
                         ++...+-|.+|.++.+  +...+..++.|.
T Consensus       299 ---~~i~~~nGv~h~~a~d--d~eai~~i~~~L  326 (333)
T d1uyra1         299 ---TQIMYNNGVSHLTAVD--DLAGVEKIVEWM  326 (333)
T ss_dssp             ---HHHHHHHTSSSEEESS--HHHHHHHHHHHH
T ss_pred             ---HhHHhhCCCceEEeCC--HHHHHHHHHHHH
Confidence               1344578999988864  345566777774

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=80.83  E-value=6.1  Score=34.42  Aligned_cols=76  Identities=9%  Similarity=0.085  Sum_probs=57.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504           60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD  139 (358)
Q Consensus        60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn  139 (358)
                      -+++.+-.....+.++.+++. ++=+|.|.=+  ..|-.|.+-+         .....+...+++.++..+.+|.|+.|=
T Consensus        97 G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~--pGf~~g~~~E---------~~g~~r~ga~~~~a~~~~~VP~isvi~  164 (299)
T d1pixa3          97 GKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT--TGIDVGNDAE---------KAELLGLGQSLIYSIQTSHIPQFEITL  164 (299)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC--CEECCSHHHH---------HTTHHHHHHHHHHHHHTCCCCEEEEEC
T ss_pred             CccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC--CCcccchHHH---------hhhHHHHHHHHHHHHHhhcceeEEEEe
Confidence            568899999999999988865 3446666544  2366664432         234567778889999999999999999


Q ss_pred             cccccCCc
Q psy504          140 GSAYGGGL  147 (358)
Q Consensus       140 G~a~GgG~  147 (358)
                      |.+.|+|.
T Consensus       165 r~~~G~a~  172 (299)
T d1pixa3         165 RKGTAAAH  172 (299)
T ss_dssp             SEEETTHH
T ss_pred             cccccccc
Confidence            99999874