Psyllid ID: psy5082

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
DSKPQREHKNKKIQQAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIHNILFHKERNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFLLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKSNLGLTTGARTDWWKNIVLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLKKNPNAKHVTIENFRTYEYDENVFLR
cccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHccccccEEEEEEcccccccEEEEccccccccHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEcHHHHHHHHHHHHHHHccccccEEEEccEEEEEEEccccc
ccHHHHHHHHHHHHHccccccccccEEEEEccccccccccHHHHHccHHHHHHHHHHHHHHcHHccHHHHHHcccccHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHcccccccccEEEEEEEccccEEEEcccHHHHHHHHHHccccEEEEEEEEccccccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccEEEccccccccHHHccHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHccccccccEEHHHHHHccccHHHHcc
DSKPQREHKNKKIQQAkqygsnnrpVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEmgikpdglighsvgelgcayadgALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIHNILFHkernlgryvyleegaqhippnaivieiaphgllqpivkkslgpetinialtnrsssvdNVEFLLEAIGQLYlnglepdvnaiypkidypippnvpsvtqFLTWDFSvksnlglttgartdWWKNIVLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYlkknpnakhvtienfrtyeydenvflr
dskpqrehknkkiqqakqygsnnrPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIHNILFHKERNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIAltnrsssvdNVEFLLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKSNLglttgartdwWKNIVLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLkknpnakhvtienfrtyeydenvflr
DSKPQREHKNKKIQQAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIHNILFHKERNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFLLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKSNLGLTTGARTDWWKNIVLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLKKNPNAKHVTIENFRTYEYDENVFLR
***********************RPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIHNILFHKERNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINI************EFLLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKSNLGLTTGARTDWWKNIVLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLKKNPNAKHVTIENFRTYEYDENVF**
**************************WLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKA************AVGKSQIHNILFHKERNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFLLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKS**************NIVLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLKKNPNAKHVTIENFRTYEYDENVFLR
*****************QYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIHNILFHKERNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFLLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKSNLGLTTGARTDWWKNIVLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLKKNPNAKHVTIENFRTYEYDENVFLR
********************SNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIHNILFHKERNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFLLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKSNLGLTTGARTDWWKNIVLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLKKNPNAKHVTIENFRTYE*D******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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DSKPQREHKNKKIQQAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIHNILFHKERNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFLLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKSNLGLTTGARTDWWKNIVLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLKKNPNAKHVTIENFRTYEYDENVFLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query358 2.2.26 [Sep-21-2011]
P12785 2505 Fatty acid synthase OS=Ra yes N/A 0.413 0.059 0.436 1e-34
P19096 2504 Fatty acid synthase OS=Mu yes N/A 0.416 0.059 0.42 1e-34
P12276 2512 Fatty acid synthase OS=Ga yes N/A 0.449 0.064 0.383 9e-34
P49327 2511 Fatty acid synthase OS=Ho yes N/A 0.407 0.058 0.428 3e-33
Q71SP7 2513 Fatty acid synthase OS=Bo yes N/A 0.405 0.057 0.417 4e-32
P96203 1827 Phthiocerol synthesis pol yes N/A 0.315 0.061 0.347 7e-12
Q7TXL7 1827 Phthiocerol/phenolphthioc yes N/A 0.315 0.061 0.347 7e-12
Q03131 3491 Erythronolide synthase, m yes N/A 0.388 0.039 0.300 8e-12
O07798 2126 Phthioceranic/hydroxyphth no N/A 0.335 0.056 0.362 1e-11
A5U9F4 2126 Phthioceranic/hydroxyphth no N/A 0.335 0.056 0.362 1e-11
>sp|P12785|FAS_RAT Fatty acid synthase OS=Rattus norvegicus GN=Fasn PE=1 SV=3 Back     alignment and function desciption
 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 13  IQQAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNIL 72
           +Q+ +Q  ++ RP+W + SGMG+QW+ MG  LM+   F  ++ + D  LK   V + ++L
Sbjct: 479 VQEVQQVPASQRPLWFICSGMGTQWRGMGLSLMRLDSFRESILRSDEALKPLGVKVSDLL 538

Query: 73  TNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAE 132
            + ++ T FD+I++SFV +  +QI L+DLL  MG+KPDG+IGHS+GE+ C YADG L+  
Sbjct: 539 LSTDEHT-FDDIVHSFVSLTAIQIALIDLLTSMGLKPDGIIGHSLGEVACGYADGCLSQR 597

Query: 133 QVIYAAFARGKASKEIDLIKGMMAAVGKS 161
           + + AA+ RG+  K+ +L  G MAAVG S
Sbjct: 598 EAVLAAYWRGQCIKDANLPAGSMAAVGLS 626
Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 4
>sp|P19096|FAS_MOUSE Fatty acid synthase OS=Mus musculus GN=Fasn PE=1 SV=2 Back     alignment and function description
>sp|P12276|FAS_CHICK Fatty acid synthase OS=Gallus gallus GN=FASN PE=1 SV=5 Back     alignment and function description
>sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens GN=FASN PE=1 SV=3 Back     alignment and function description
>sp|Q71SP7|FAS_BOVIN Fatty acid synthase OS=Bos taurus GN=FASN PE=2 SV=1 Back     alignment and function description
>sp|P96203|PPSD_MYCTU Phthiocerol synthesis polyketide synthase type I PpsD OS=Mycobacterium tuberculosis GN=ppsD PE=3 SV=1 Back     alignment and function description
>sp|Q7TXL7|PPSD_MYCBO Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsD OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=ppsD PE=3 SV=1 Back     alignment and function description
>sp|Q03131|ERYA1_SACER Erythronolide synthase, modules 1 and 2 OS=Saccharopolyspora erythraea GN=eryA PE=1 SV=1 Back     alignment and function description
>sp|O07798|PHAS_MYCTU Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis GN=pks2 PE=1 SV=1 Back     alignment and function description
>sp|A5U9F4|PHAS_MYCTA Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pks2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
350407733 2418 PREDICTED: fatty acid synthase-like [Bom 0.396 0.058 0.650 3e-50
383856217 2420 PREDICTED: fatty acid synthase-like [Meg 0.416 0.061 0.606 4e-50
380015434 2392 PREDICTED: LOW QUALITY PROTEIN: fatty ac 0.413 0.061 0.611 5e-50
328776933 2394 PREDICTED: fatty acid synthase-like isof 0.413 0.061 0.624 7e-50
332025926 2409 Fatty acid synthase [Acromyrmex echinati 0.407 0.060 0.653 2e-49
307180374 2409 Fatty acid synthase [Camponotus floridan 0.405 0.060 0.643 2e-49
322792317 964 hypothetical protein SINV_05241 [Solenop 0.407 0.151 0.659 6e-49
328703209 2198 PREDICTED: fatty acid synthase-like [Acy 0.385 0.062 0.654 7e-48
328703199 1281 PREDICTED: fatty acid synthase-like [Acy 0.377 0.105 0.669 9e-48
156549724 3088 PREDICTED: fatty acid synthase-like [Nas 0.432 0.050 0.602 2e-47
>gi|350407733|ref|XP_003488176.1| PREDICTED: fatty acid synthase-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 93/143 (65%), Positives = 118/143 (82%), Gaps = 1/143 (0%)

Query: 17  KQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEE 76
           ++Y    RP+W +FSGMGSQW  MG+ LM+FP+FA+AV KCD+VLK + +DI+NI+TN++
Sbjct: 506 QEYSGIKRPIWFVFSGMGSQWPGMGESLMRFPIFAKAVQKCDTVLKPHGIDIVNIITNKD 565

Query: 77  DKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIY 136
            KT FDNILNSFVGIA +QIGLVDLL  +GI+PD +IGHSVGELGCAYADG  TAEQ++ 
Sbjct: 566 KKT-FDNILNSFVGIAVIQIGLVDLLTSVGIEPDNIIGHSVGELGCAYADGCFTAEQMVL 624

Query: 137 AAFARGKASKEIDLIKGMMAAVG 159
           AA++RG AS E  +I+G MAAVG
Sbjct: 625 AAYSRGLASIETKMIRGSMAAVG 647

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383856217|ref|XP_003703606.1| PREDICTED: fatty acid synthase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380015434|ref|XP_003691707.1| PREDICTED: LOW QUALITY PROTEIN: fatty acid synthase-like [Apis florea] Back     alignment and taxonomy information
>gi|328776933|ref|XP_395426.4| PREDICTED: fatty acid synthase-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|332025926|gb|EGI66082.1| Fatty acid synthase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307180374|gb|EFN68400.1| Fatty acid synthase [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322792317|gb|EFZ16301.1| hypothetical protein SINV_05241 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|328703209|ref|XP_001951947.2| PREDICTED: fatty acid synthase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328703199|ref|XP_003242123.1| PREDICTED: fatty acid synthase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|156549724|ref|XP_001605685.1| PREDICTED: fatty acid synthase-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
FB|FBgn0027571 2544 CG3523 [Drosophila melanogaste 0.421 0.059 0.532 1.8e-61
FB|FBgn0040001 2394 CG17374 [Drosophila melanogast 0.418 0.062 0.5 3.8e-54
FB|FBgn0042627 2409 v(2)k05816 "v(2)k05816" [Droso 0.410 0.061 0.476 5.6e-53
ZFIN|ZDB-GENE-030131-7802 2514 fasn "fatty acid synthase" [Da 0.410 0.058 0.405 5.1e-51
RGD|620665 2505 Fasn "fatty acid synthase" [Ra 0.413 0.059 0.436 3.4e-50
UNIPROTKB|P12785 2505 Fasn "Fatty acid synthase" [Ra 0.413 0.059 0.436 3.4e-50
UNIPROTKB|P49327 2511 FASN "Fatty acid synthase" [Ho 0.407 0.058 0.428 1.9e-49
UNIPROTKB|I3LC73 1375 FASN "Uncharacterized protein" 0.410 0.106 0.425 2.6e-49
UNIPROTKB|E1BWG0 2446 FASN "Fatty acid synthase" [Ga 0.407 0.059 0.428 2.9e-49
UNIPROTKB|F1N8A8 2512 FASN "Fatty acid synthase" [Ga 0.407 0.058 0.428 3.1e-49
FB|FBgn0027571 CG3523 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 430 (156.4 bits), Expect = 1.8e-61, Sum P(2) = 1.8e-61
 Identities = 82/154 (53%), Positives = 108/154 (70%)

Query:    10 NKKIQQAKQYGSNN--RPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVD 67
             +K   Q +   SN+  RP+W ++SGMGSQW +M KDLMK   FA+ + +C  VLK   VD
Sbjct:   618 SKGTHQREVIESNDDKRPIWYIYSGMGSQWASMAKDLMKIEAFAKTIQRCADVLKPEGVD 677

Query:    68 IMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADG 127
             ++++LT   DK+ F+NILNSF+ IA +Q+ L DLL  +GI PDG++GHSVGELGCAYADG
Sbjct:   678 LIDVLTRSTDKS-FENILNSFISIAAMQVALTDLLSSLGIHPDGIVGHSVGELGCAYADG 736

Query:   128 ALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKS 161
               T EQ + AA+ RGK+  +  L KG MAAVG S
Sbjct:   737 CFTPEQTVLAAYWRGKSILDTQLAKGKMAAVGLS 770
GO:0004312 "fatty acid synthase activity" evidence=ISS
GO:0016295 "myristoyl-[acyl-carrier-protein
GO:0009058 "biosynthetic process" evidence=IEA
GO:0004314 "[acyl-carrier-protein
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0004313 "[acyl-carrier-protein
GO:0004316 "3-oxoacyl-[acyl-carrier-protein
GO:0016296 "palmitoyl-[acyl-carrier-protein
GO:0004320 "oleoyl-[acyl-carrier-protein
GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein
GO:0004319 "enoyl-[acyl-carrier-protein
GO:0004315 "3-oxoacyl-[acyl-carrier-protein
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
FB|FBgn0040001 CG17374 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0042627 v(2)k05816 "v(2)k05816" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7802 fasn "fatty acid synthase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|620665 Fasn "fatty acid synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P12785 Fasn "Fatty acid synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P49327 FASN "Fatty acid synthase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LC73 FASN "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWG0 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8A8 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
smart00827298 smart00827, PKS_AT, Acyl transferase domain in pol 1e-34
pfam00698319 pfam00698, Acyl_transf_1, Acyl transferase domain 1e-31
COG0331310 COG0331, FabD, (acyl-carrier-protein) S-malonyltra 1e-15
COG3321 1061 COG3321, COG3321, Polyketide synthase modules and 1e-15
TIGR02813 2582 TIGR02813, omega_3_PfaA, polyketide-type polyunsat 1e-12
TIGR00128290 TIGR00128, fabD, malonyl CoA-acyl carrier protein 3e-08
TIGR03131295 TIGR03131, malonate_mdcH, malonate decarboxylase, 5e-07
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information 
 Score =  128 bits (325), Expect = 1e-34
 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 3/133 (2%)

Query: 29  LFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKEN-NVDIMNILTNEEDKTIFDNILN 86
           +F+G GSQW  MG++L +  PVF  A+ +CD+ L+      ++++L  E+      +   
Sbjct: 1   VFTGQGSQWAGMGRELYETEPVFREALDECDAALQPLLGWSLLDVLLGEDGAASLLDTEV 60

Query: 87  SFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASK 146
           +   +  VQ+ L  LL   G++PD ++GHS GE+  AY  G L+ E       ARG+  +
Sbjct: 61  AQPALFAVQVALARLLRSWGVRPDAVVGHSSGEIAAAYVAGVLSLEDAARLVAARGRLMQ 120

Query: 147 EIDLIKGMMAAVG 159
            +    G M AVG
Sbjct: 121 ALPG-GGAMLAVG 132

Length = 298
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain Back     alignment and domain information
>gnl|CDD|223408 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>gnl|CDD|232839 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase Back     alignment and domain information
>gnl|CDD|132175 TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 358
KOG1202|consensus 2376 100.0
PF00698318 Acyl_transf_1: Acyl transferase domain; InterPro: 100.0
TIGR02816538 pfaB_fam PfaB family protein. The protein PfaB is 100.0
COG33211061 Polyketide synthase modules and related proteins [ 100.0
TIGR02813 2582 omega_3_PfaA polyketide-type polyunsaturated fatty 100.0
TIGR00128290 fabD malonyl CoA-acyl carrier protein transacylase 100.0
TIGR03131295 malonate_mdcH malonate decarboxylase, epsilon subu 100.0
smart00827298 PKS_AT Acyl transferase domain in polyketide synth 100.0
PLN02752343 [acyl-carrier protein] S-malonyltransferase 100.0
COG0331310 FabD (acyl-carrier-protein) S-malonyltransferase [ 100.0
KOG2926|consensus386 99.91
PF14765 295 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_ 98.59
smart00826167 PKS_DH PKS_DH. 97.9
cd07198172 Patatin Patatin-like phospholipase. Patatin is a s 93.93
COG1752306 RssA Predicted esterase of the alpha-beta hydrolas 92.31
cd07207194 Pat_ExoU_VipD_like ExoU and VipD-like proteins; ho 92.17
TIGR02813 2582 omega_3_PfaA polyketide-type polyunsaturated fatty 92.12
cd07205175 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholi 91.95
cd07209215 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin sim 91.35
cd07210221 Pat_hypo_W_succinogenes_WS1459_like Hypothetical p 91.0
cd07227269 Pat_Fungal_NTE1 Fungal patatin-like phospholipase 90.84
cd07225306 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domai 89.98
cd07229391 Pat_TGL3_like Triacylglycerol lipase 3. Triacylgly 89.85
cd07228175 Pat_NTE_like_bacteria Bacterial patatin-like phosp 89.54
PRK10279300 hypothetical protein; Provisional 88.59
TIGR03101266 hydr2_PEP hydrolase, ortholog 2, exosortase system 87.53
cd07224233 Pat_like Patatin-like phospholipase. Patatin-like 87.18
cd07218245 Pat_iPLA2 Calcium-independent phospholipase A2; Cl 86.38
TIGR03056278 bchO_mg_che_rel putative magnesium chelatase acces 85.84
cd07206298 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 85.47
cd07231323 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar 85.22
cd00493131 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier pr 85.21
cd07204243 Pat_PNPLA_like Patatin-like phospholipase domain c 84.8
cd07220249 Pat_PNPLA2 Patatin-like phospholipase domain conta 82.9
cd07221252 Pat_PNPLA3 Patatin-like phospholipase domain conta 82.57
PRK11126242 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl 82.15
cd07230421 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TG 81.78
cd01288131 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier 81.17
cd07208266 Pat_hypo_Ecoli_yjju_like Hypothetical patatin simi 80.63
cd07232407 Pat_PLPL Patain-like phospholipase. Patatin-like p 80.24
>KOG1202|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.2e-56  Score=446.95  Aligned_cols=333  Identities=41%  Similarity=0.699  Sum_probs=314.1

Q ss_pred             cccccccCCCCCCEEEEeCCCCcchHHHHHHHhccHHHHHHHHHHHHHHhhCCCCcHHHhcCCCCcchhhhhHhHHHHHH
Q psy5082          13 IQQAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIA   92 (358)
Q Consensus        13 ~~~~~~~~~~~~~v~fvF~Gqg~~~~~m~~~L~~~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~~q~~~~   92 (358)
                      ...+.+++...+|+.|+|+|.|+||++|+.+|++.+.||+.+.+|++.|++.|+++.+.|... ++..+++..++.+.+.
T Consensus       488 ~~ev~~~~~~eRPiwfiysGMGsQW~~Ma~~LMkl~~F~dsi~~~ae~l~~~gldv~~vL~~s-~~~tfdn~l~sfvsit  566 (2376)
T KOG1202|consen  488 GPEVQQVPAGERPIWFIYSGMGSQWAGMAKDLMKLERFRDSIQRSAEVLKPFGLDVIDVLTRS-DESTFDNILNSFVSIT  566 (2376)
T ss_pred             CcceeecCCCCcceEEEEeCCcchhhHHHHHHhhhHHHHHHHHHHHhhhcccCcchhhhhcCC-ChHHHHHHHHHHHHHH
Confidence            457788888889999999999999999999999999999999999999999999999999988 7777888999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhccccccceEEeecCccc--------
Q psy5082          93 CVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIH--------  164 (358)
Q Consensus        93 a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~~~~~g~m~av~~~~~~--------  164 (358)
                      |+|+||.++|..+||+||.++|||.||+.|+|+.|++|.|+++..+|+||+.+.++..++|+|+||++++++        
T Consensus       567 AiQiaLtDlLs~lgi~PDGIvGHS~GElgc~YaDGclt~EqtvlaAYwRG~sild~~l~kGaMAAVGLsWEq~~~~~P~~  646 (2376)
T KOG1202|consen  567 AIQIALTDLLSCLGIRPDGIVGHSLGELGCGYADGCLTQEQTVLAAYWRGQSILDTHLPKGAMAAVGLSWEQCKSRCPPD  646 (2376)
T ss_pred             HHHHHHHHHHHhcCCCCCcccccccchhcccccccccCHHHHHHHHHHcCceeccccCCCcchhhhcCCHHHHhccCCCc
Confidence            999999999999999999999999999999999999999999999999999999988999999999999988        


Q ss_pred             -----------------------------------------ccccccc--------------------------------
Q psy5082         165 -----------------------------------------NILFHKE--------------------------------  171 (358)
Q Consensus       165 -----------------------------------------~~afHs~--------------------------------  171 (358)
                                                               .+|||||                                
T Consensus       647 ~~paCHNs~D~~TiSGp~a~v~~~v~qL~~~gvFak~V~t~G~aFHS~~m~a~~p~l~~~l~k~i~epK~rsarWlSTSi  726 (2376)
T KOG1202|consen  647 VVPACHNSKDNVTISGPQASVFAFVEQLRAEGVFAKEVRTGGYAFHSPYMEAAAPPLRQSLEKVIPEPKPRSARWLSTSI  726 (2376)
T ss_pred             ccccccCCCCceEecCChHHHHHHHHHhhhcCeeeeEecCCCccccCHHHHhhChHHHHHHHHhcCCCCCcccchhhccC
Confidence                                                     8999999                                


Q ss_pred             -------------------ccccCcCchhhhhccCCCCeEEEEeCCCCCcHHHHHhhcCCCceEEeeccCCCCCChHHHH
Q psy5082         172 -------------------RNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFL  232 (358)
Q Consensus       172 -------------------~~~~~pV~f~~av~~l~~~~~~vEiGp~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  232 (358)
                                         .|+.+||.|.+|++.++++.+.|||.||..+...+++.+++.++.++.+.|+. .++.+.|
T Consensus       727 pEa~W~s~la~tsSA~Y~vnNl~SPVLF~eAlq~vP~nAv~vEiAPH~LlqAiLkRsL~p~~t~v~Lmkr~h-~~NlEff  805 (2376)
T KOG1202|consen  727 PEAQWHSSLARTSSAEYHVNNLVSPVLFHEALQHVPENAVVVEIAPHGLLQAILKRSLKPSCTNVSLMKRGH-RNNLEFF  805 (2376)
T ss_pred             ChhhhcChhhhhcchhhhhhccccHHHHHHHHHhCcccceEEEecchHHHHHHHHhhcCCccceehhhcCcc-cccHHHH
Confidence                               89999999999999999999999999999999999999999999999999998 7889999


Q ss_pred             HHHHHHHhhcCCCCCCcccCCCCCCCCCCCCCccCCCCCCCCcccccCC-----CCCCcccccceeEEEEecCCcccccc
Q psy5082         233 LEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKSNLG-----LTTGARTDWWKNIVLGICSKEKYQHL  307 (358)
Q Consensus       233 ~~~la~L~~~G~~vdw~~~~~~~~~~~~~~~~~~LP~Y~f~~~~~W~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~L  307 (358)
                      +..+++||..|++++...++|+.++|+++++||.-|..-|||+..|...     ..++...      ++++++.++..||
T Consensus       806 L~~lgrly~aG~~~qi~~l~p~i~ypv~rGTPmi~~lv~WDHtq~W~~~~f~~gs~s~~a~------~niD~~~edd~yL  879 (2376)
T KOG1202|consen  806 LAGLGRLYAAGIQPQILALFPPIEYPVPRGTPMIGPLVKWDHTQKWLVPKFPGGSGSSAAI------YNIDLSKEDDHYL  879 (2376)
T ss_pred             HHHHHHHHHccCCccceeccCCCcccCCCCCcCcccccCccccccccccccCCCCCccceE------EEccCCcccccee
Confidence            9999999999999999999999999999999999999999999999932     2334444      8889999998899


Q ss_pred             cCceeCCeEeeehhhHHHHHHHHHHh-cCCCCCc--eEEeeEEeecccc
Q psy5082         308 LNYKIGEKFVVPVAAYIDLLLDFYLK-KNPNAKH--VTIENFRTYEYDE  353 (358)
Q Consensus       308 ~~H~v~g~~v~Paa~yle~a~~a~~~-~~~~~~~--~~~~dv~~~~~~~  353 (358)
                      .||.++|+++||+++|+.+||...++ .|..+.+  ++||||.||++-+
T Consensus       880 ~~HtiDGRvLfPaTGymtlaW~tlak~qGldy~ktPVvfEdvv~h~ATI  928 (2376)
T KOG1202|consen  880 ADHTIDGRVLFPATGYMTLAWKTLAKPQGLDYEKTPVVFEDVVFHRATI  928 (2376)
T ss_pred             ccceecceEEeccccchhHHHHHHhhhccCCcccCceeeeeeeeeeeEe
Confidence            99999999999999999999999999 8888777  9999999999753

>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2 Back     alignment and domain information
>TIGR02816 pfaB_fam PfaB family protein Back     alignment and domain information
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase Back     alignment and domain information
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit Back     alignment and domain information
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>PLN02752 [acyl-carrier protein] S-malonyltransferase Back     alignment and domain information
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism] Back     alignment and domain information
>KOG2926|consensus Back     alignment and domain information
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A Back     alignment and domain information
>smart00826 PKS_DH PKS_DH Back     alignment and domain information
>cd07198 Patatin Patatin-like phospholipase Back     alignment and domain information
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli Back     alignment and domain information
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes Back     alignment and domain information
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7 Back     alignment and domain information
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3 Back     alignment and domain information
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>PRK10279 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated Back     alignment and domain information
>cd07224 Pat_like Patatin-like phospholipase Back     alignment and domain information
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2 Back     alignment and domain information
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein Back     alignment and domain information
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase Back     alignment and domain information
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase Back     alignment and domain information
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation Back     alignment and domain information
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family Back     alignment and domain information
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2 Back     alignment and domain information
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3 Back     alignment and domain information
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional Back     alignment and domain information
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5 Back     alignment and domain information
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway Back     alignment and domain information
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information
>cd07232 Pat_PLPL Patain-like phospholipase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
2vz8_A 2512 Crystal Structure Of Mammalian Fatty Acid Synthase 2e-34
2vz8_A 2512 Crystal Structure Of Mammalian Fatty Acid Synthase 2e-17
2jfk_A433 Structure Of The Mat Domain Of Human Fas With Malon 2e-34
2jfk_A433 Structure Of The Mat Domain Of Human Fas With Malon 1e-15
2jfd_A425 Structure Of The Mat Domain Of Human Fas Length = 4 3e-34
2jfd_A425 Structure Of The Mat Domain Of Human Fas Length = 4 2e-14
3hhd_A 965 Structure Of The Human Fatty Acid Synthase Ks-Mat D 3e-34
3hhd_A965 Structure Of The Human Fatty Acid Synthase Ks-Mat D 2e-18
2qo3_A915 Crystal Structure Of [ks3][at3] Didomain From Modul 6e-12
3tzw_A491 Crystal Structure Of A Fragment Containing The Acyl 9e-09
2hg4_A917 Structure Of The Ketosynthase-acyltransferase Didom 2e-08
3im8_A307 Crystal Structure Of Mcat From Streptococcus Pneumo 2e-07
2c2n_A339 Structure Of Human Mitochondrial Malonyltransferase 4e-04
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 Back     alignment and structure 
Iteration: 1

 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Query: 14  QQAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILT 73
           Q+ +Q   + RPVW + SGMG+QWQ MG  LM+   F  ++ + D  LK   + + ++L 
Sbjct: 480 QEVQQVPGSKRPVWFICSGMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLL 539
Query: 74  NEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQ 133
           +  D+ + D+I++SFV +  +QI L+DLL  +G++PDG+IGHS+GE+ C YADG LT E+
Sbjct: 540 ST-DEAVLDDIVSSFVSLTSIQIALIDLLTSLGLQPDGIIGHSLGEVACGYADGCLTQEE 598
Query: 134 VIYAAFARGKASKEIDLIKGMMAAVGKS 161
            + +++ RG   KE +++ G MAAVG S
Sbjct: 599 AVLSSYWRGYCIKEANVLPGAMAAVGLS 626
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 Back     alignment and structure
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa Length = 433 Back     alignment and structure
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa Length = 433 Back     alignment and structure
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas Length = 425 Back     alignment and structure
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas Length = 425 Back     alignment and structure
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 Back     alignment and structure
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 Back     alignment and structure
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of 6- Deoxyerthronolide B Synthase Length = 915 Back     alignment and structure
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The Acyltransferase Domain Of Pks13 From Mycobacterium Tuberculosis In The Orthorhombic Apoform At 2.6 A Length = 491 Back     alignment and structure
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of Module 5 From Debs. Length = 917 Back     alignment and structure
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae Length = 307 Back     alignment and structure
>pdb|2C2N|A Chain A, Structure Of Human Mitochondrial Malonyltransferase Length = 339 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 6e-52
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 3e-19
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 5e-51
3hhd_A965 Fatty acid synthase; transferase, multienzyme, meg 8e-20
2qo3_A915 Eryaii erythromycin polyketide synthase modules 3; 1e-19
2hg4_A917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 4e-18
4amm_A401 DYNE8; transferase; 1.40A {Micromonospora chersina 5e-17
1nm2_A317 Malonyl COA:acyl carrier protein malonyltransfera; 3e-11
2c2n_A339 Malonyl COA-acyl carrier protein transacylase; fat 2e-10
3ezo_A318 Malonyl COA-acyl carrier protein transacylase; ssg 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3im8_A307 Malonyl acyl carrier protein transacylase; fatty a 1e-09
2qc3_A303 MCT, malonyl COA-acyl carrier protein transacylase 1e-09
3k89_A314 Malonyl COA-ACP transacylase; bacterial blight, XO 4e-09
3tqe_A316 Malonyl-COA-[acyl-carrier-protein] transacylase; f 6e-09
3ptw_A336 Malonyl COA-acyl carrier protein transacylase; str 7e-09
3sbm_A281 DISD protein, DSZD; transferase; HET: P6G; 1.35A { 1e-08
1mla_A309 Malonyl-coenzyme A acyl carrier protein transacyla 3e-08
2cuy_A305 Malonyl COA-[acyl carrier protein] transacylase; t 3e-08
3qat_A318 Malonyl COA-acyl carrier protein transacylase; sea 4e-08
2h1y_A321 Malonyl coenzyme A-acyl carrier protein transacyl; 4e-08
3g87_A394 Malonyl COA-acyl carrier protein transacylase; ssg 5e-08
3im9_A316 MCAT, MCT, malonyl COA-acyl carrier protein transa 2e-07
2uv8_G2051 Fatty acid synthase subunit beta (FAS1); fatty aci 9e-05
2uv8_G 2051 Fatty acid synthase subunit beta (FAS1); fatty aci 2e-04
2uva_G 2060 Fatty acid synthase beta subunits; fungal, dehydra 2e-04
2uva_G2060 Fatty acid synthase beta subunits; fungal, dehydra 4e-04
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Back     alignment and structure
 Score =  184 bits (469), Expect = 6e-52
 Identities = 61/147 (41%), Positives = 97/147 (65%), Gaps = 1/147 (0%)

Query: 13  IQQAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNIL 72
            Q+ +Q   + RPVW + SGMG+QWQ MG  LM+   F  ++ + D  LK   + + ++L
Sbjct: 479 SQEVQQVPGSKRPVWFICSGMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLL 538

Query: 73  TNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAE 132
            + ++    D+I++SFV +  +QI L+DLL  +G++PDG+IGHS+GE+ C YADG LT E
Sbjct: 539 LSTDEAV-LDDIVSSFVSLTSIQIALIDLLTSLGLQPDGIIGHSLGEVACGYADGCLTQE 597

Query: 133 QVIYAAFARGKASKEIDLIKGMMAAVG 159
           + + +++ RG   KE +++ G MAAVG
Sbjct: 598 EAVLSSYWRGYCIKEANVLPGAMAAVG 624
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 Back     alignment and structure
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Length = 401 Back     alignment and structure
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B Length = 317 Back     alignment and structure
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens} Length = 339 Back     alignment and structure
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B} Length = 318 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae} Length = 307 Back     alignment and structure
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A Length = 303 Back     alignment and structure
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A* Length = 314 Back     alignment and structure
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii} Length = 316 Back     alignment and structure
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens} Length = 336 Back     alignment and structure
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A Length = 281 Back     alignment and structure
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A* Length = 309 Back     alignment and structure
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Length = 305 Back     alignment and structure
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae} Length = 318 Back     alignment and structure
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori} Length = 321 Back     alignment and structure
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei} Length = 394 Back     alignment and structure
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Length = 316 Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Length = 2051 Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Length = 2051 Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Length = 2060 Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Length = 2060 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query358
3hhd_A965 Fatty acid synthase; transferase, multienzyme, meg 100.0
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 100.0
3tzy_A491 Polyketide synthase PKS13; acyltransferase, long f 100.0
2qo3_A915 Eryaii erythromycin polyketide synthase modules 3; 100.0
2hg4_A917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 100.0
3ptw_A336 Malonyl COA-acyl carrier protein transacylase; str 100.0
4amm_A401 DYNE8; transferase; 1.40A {Micromonospora chersina 100.0
3ezo_A318 Malonyl COA-acyl carrier protein transacylase; ssg 100.0
2h1y_A321 Malonyl coenzyme A-acyl carrier protein transacyl; 100.0
3tqe_A316 Malonyl-COA-[acyl-carrier-protein] transacylase; f 100.0
3im8_A307 Malonyl acyl carrier protein transacylase; fatty a 100.0
3k89_A314 Malonyl COA-ACP transacylase; bacterial blight, XO 100.0
3qat_A318 Malonyl COA-acyl carrier protein transacylase; sea 100.0
2cuy_A305 Malonyl COA-[acyl carrier protein] transacylase; t 100.0
1mla_A309 Malonyl-coenzyme A acyl carrier protein transacyla 100.0
3im9_A316 MCAT, MCT, malonyl COA-acyl carrier protein transa 100.0
1nm2_A317 Malonyl COA:acyl carrier protein malonyltransfera; 100.0
2qc3_A303 MCT, malonyl COA-acyl carrier protein transacylase 100.0
3g87_A394 Malonyl COA-acyl carrier protein transacylase; ssg 100.0
3sbm_A281 DISD protein, DSZD; transferase; HET: P6G; 1.35A { 100.0
2c2n_A339 Malonyl COA-acyl carrier protein transacylase; fat 100.0
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 99.98
2uv8_G 2051 Fatty acid synthase subunit beta (FAS1); fatty aci 99.97
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 99.97
2uva_G 2060 Fatty acid synthase beta subunits; fungal, dehydra 99.96
2uv8_G2051 Fatty acid synthase subunit beta (FAS1); fatty aci 99.93
2uva_G2060 Fatty acid synthase beta subunits; fungal, dehydra 99.93
3kg8_A 308 CURJ; polyketide synthase, double hotdog fold, deh 98.93
3kg9_A 296 CURK; polyketide synthase, double hotdog fold, deh 98.87
3kg6_A 285 CURF; polyketide synthase, double hotdog fold, deh 98.84
3kg7_A 293 CURH; polyketide synthase, double hotdog fold, deh 98.71
3hrq_A 357 PKS, aflatoxin biosynthesis polyketide synthase; h 98.69
3el6_A 313 Erythromycin dehydratase; dehydratase double hotdo 98.6
2uv8_A 1887 Fatty acid synthase subunit alpha (FAS2); fatty ac 92.84
3esi_A129 Uncharacterized protein; protein from erwinia caro 91.14
1tqh_A247 Carboxylesterase precursor; tetrahedral intermedia 89.05
1tht_A305 Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. 87.08
3d6x_A146 (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; 84.98
4i83_A152 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; 84.7
1ehy_A294 Protein (soluble epoxide hydrolase); alpha/beta hy 84.35
3bf7_A255 Esterase YBFF; thioesterase, helical CAP, hydrolas 83.68
3om8_A266 Probable hydrolase; structural genomics, PSI-2, pr 83.41
2wj6_A276 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid 83.04
3v48_A268 Aminohydrolase, putative aminoacrylate hydrolase R 82.63
3bwx_A285 Alpha/beta hydrolase; YP_496220.1, joint center fo 82.26
1iup_A282 META-cleavage product hydrolase; aromatic compound 81.93
2xua_A266 PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate 81.48
2puj_A286 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; 81.46
4h4g_A160 (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; 81.43
1wom_A271 RSBQ, sigma factor SIGB regulation protein RSBQ; a 81.32
2yys_A286 Proline iminopeptidase-related protein; TTHA1809, 81.31
2ocg_A254 Valacyclovir hydrolase; alpha beta hydrolase fold; 81.11
1azw_A313 Proline iminopeptidase; aminopeptidase, serine pro 80.81
2wue_A291 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas 80.54
1c4x_A285 BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di 80.46
1fj2_A232 Protein (acyl protein thioesterase 1); alpha/beta 80.1
3afi_E316 Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 80.09
1q0r_A298 RDMC, aclacinomycin methylesterase; anthracycline, 80.06
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Back     alignment and structure
Probab=100.00  E-value=5.5e-67  Score=553.45  Aligned_cols=333  Identities=34%  Similarity=0.652  Sum_probs=241.4

Q ss_pred             cccCCCCCCEEEEeCCCCcchHHHHHHHhccHHHHHHHHHHHHHHhhCCCCcHHHhcCCCCcchhhhhHhHHHHHHHHHH
Q psy5082          17 KQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQI   96 (358)
Q Consensus        17 ~~~~~~~~~v~fvF~Gqg~~~~~m~~~L~~~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~~q~~~~a~q~   96 (358)
                      ...+...++++|+|||||+||+|||++||++|.|++.+++|+++++.+|+++.+.++.. +...++++.++||++|++|+
T Consensus       485 ~~~~~~~~~v~fvF~GQGsQ~~gMg~~L~~~p~fr~~~~~~~~~l~~lg~~l~~~l~~~-~~~~l~~~~~~Qpal~a~q~  563 (965)
T 3hhd_A          485 QQVPAGERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLST-DESTFDDIVHSFVSLTAIQI  563 (965)
T ss_dssp             EECCCSCCCEEEEECCSSCCCTTTTTTGGGSHHHHHHHHHHHHHHGGGTCCHHHHHHCC-CTTGGGSHHHHHHHHHHHHH
T ss_pred             hcccCCCCCEEEEECCCCcchhhHHHHHHhChHHHHHHHHHHHHHHHcCCCHHHHHhcC-CcchhhhHHHHHHHHHHHHH
Confidence            33445667899999999999999999999999999999999999999999999999876 55668899999999999999


Q ss_pred             HHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhccccccceEEeecCccc------------
Q psy5082          97 GLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIH------------  164 (358)
Q Consensus        97 al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~~~~~g~m~av~~~~~~------------  164 (358)
                      ||+++|++|||+|++|+|||+|||+|||+||+||++||+++++.|+++|++.....|.|++|+++.++            
T Consensus       564 AL~~ll~~~Gi~P~~v~GHS~GEiaAa~~AG~lsleda~~lv~~Rg~lm~~~~~~~G~M~AV~~~~~~v~~~l~~~v~iA  643 (965)
T 3hhd_A          564 GLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPPGAMAAVGLSWEECKQRCPPGVVPA  643 (965)
T ss_dssp             HHHHHHHHTTCCCSEEEECTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSCCCCEEEEEESSCHHHHHHHCCTTCEEE
T ss_pred             HHHHHHHHcCCCCcEEeccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcccCCceEEEecCCHHHHHHHhccCeEEE
Confidence            99999999999999999999999999999999999999999999999998765578999999888765            


Q ss_pred             ------------------------------------c-cccccc------------------------------------
Q psy5082         165 ------------------------------------N-ILFHKE------------------------------------  171 (358)
Q Consensus       165 ------------------------------------~-~afHs~------------------------------------  171 (358)
                                                          . +||||+                                    
T Consensus       644 ~~NsP~~~ViSG~~~al~~l~~~l~~~g~~~~~L~v~~~AfHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~  723 (965)
T 3hhd_A          644 CHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQ  723 (965)
T ss_dssp             EEEETTEEEEEEEHHHHHHHHHHHHHTTCCEEEECCSSCCCSSGGGGGGHHHHHHHHHHHCSSCCBCCTTBCCSSSCGGG
T ss_pred             EEcCCCCEEecCCHHHHHHHHHHHHhcCceeEecCCCCCCCcChHhcccHHHHHHHHHHhhccCCCCcceEEeeeccccc
Confidence                                                3 899998                                    


Q ss_pred             ---------------ccccCcCchhhhhccCCCCeEEEEeCCCCCcHHHHHhhcCCCceEEeeccCCCCCChHHHHHHHH
Q psy5082         172 ---------------RNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFLLEAI  236 (358)
Q Consensus       172 ---------------~~~~~pV~f~~av~~l~~~~~~vEiGp~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l  236 (358)
                                     +|+++||+|.++++.+.+.++|||||||++|+++++++++....+++++.++. .+++..+++++
T Consensus       724 ~~~~~~~~~~~~yw~~~l~~pV~F~~av~~l~~~~~fvEiGP~~~L~~~~~~~l~~~~~~~~~l~r~~-~~~~~~ll~al  802 (965)
T 3hhd_A          724 WHSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDH-RDNLEFFLAGI  802 (965)
T ss_dssp             TTSHHHHBCCHHHHHHHHHSCBCHHHHHTTSCTTCEEEEESSSCTTHHHHHHHSCTTCEEEECCCTTC-SCHHHHHHHHH
T ss_pred             ccccchhcccHHHHHHHhhCcEeHHHHHHHHhcCCEEEEeCChHHHHHHHHHHhCCCCeEEecccCCC-CcHHHHHHHHH
Confidence                           58999999999999999999999999999999999999987888999999875 36789999999


Q ss_pred             HHHhhcCCCCCCcccCCCCCCCCCCCCCccCCCCCCCCcccccCCCCC----CcccccceeEEEEecCCcc-cccccCce
Q psy5082         237 GQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKSNLGLTT----GARTDWWKNIVLGICSKEK-YQHLLNYK  311 (358)
Q Consensus       237 a~L~~~G~~vdw~~~~~~~~~~~~~~~~~~LP~Y~f~~~~~W~~~~~~----~~~~~~~~~~~~~~l~~~~-~~~L~~H~  311 (358)
                      ++||++|++|||..+|+...++..+.+++.||+|||||++||......    +...+ -...++.+++.++ +|||.||+
T Consensus       803 ~~L~~~G~~vd~~~~~~~~~~~~~~~~~~~lP~Y~w~~~~~w~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~pwl~~H~  881 (965)
T 3hhd_A          803 GRLHLSGIDANPNALFPPVEFPAPRGTPLISPLIKWDHSLAWDVPAAEDFPNGSGSP-SAAIYNIDTSSESPDHYLVDHT  881 (965)
T ss_dssp             HHHHHTTCCCCGGGGSCCCCSSCCTTCCCSGGGCCCCCCSCCCCCCGGGSCC----------------------------
T ss_pred             HHHHhCCCCCCHHHhCCCcccccCCCcccCCCCcccccccccccccccccCCCCcCC-CceEEEeecCccccCccccCce
Confidence            999999999999999988777766667888999999999999843210    11100 0112455566677 89999999


Q ss_pred             eCCeEeeehhhHHHHHHHHHHh-cCCCCC-c-eEEeeEEeeccc
Q psy5082         312 IGEKFVVPVAAYIDLLLDFYLK-KNPNAK-H-VTIENFRTYEYD  352 (358)
Q Consensus       312 v~g~~v~Paa~yle~a~~a~~~-~~~~~~-~-~~~~dv~~~~~~  352 (358)
                      |+|++||||++|++||++|+++ .+.... . +.|+||.|++|.
T Consensus       882 v~g~~~~P~a~y~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~l  925 (965)
T 3hhd_A          882 LDGRVLFPATGYLSIVWKTLARALGLGVEQLPVVFEDVVLHQAT  925 (965)
T ss_dssp             --------------------------------------------
T ss_pred             eCCeEecCcHHHHHHHHHHHHHHhCCCcccCceEEEeeEecCCE
Confidence            9999999999999999999876 443322 2 789999999884
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Back     alignment and structure
>3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A* Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Back     alignment and structure
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens} Back     alignment and structure
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Back     alignment and structure
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori} Back     alignment and structure
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii} Back     alignment and structure
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae} Back     alignment and structure
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A* Back     alignment and structure
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae} Back     alignment and structure
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Back     alignment and structure
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A* Back     alignment and structure
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Back     alignment and structure
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B Back     alignment and structure
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A Back     alignment and structure
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei} Back     alignment and structure
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A Back     alignment and structure
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens} Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>3kg8_A CURJ; polyketide synthase, double hotdog fold, dehydratase, lyase; 2.45A {Lyngbya majuscula} Back     alignment and structure
>3kg9_A CURK; polyketide synthase, double hotdog fold, dehydratase, lyase; 1.70A {Lyngbya majuscula} Back     alignment and structure
>3kg6_A CURF; polyketide synthase, double hotdog fold, dehydratase, lyase; 2.70A {Lyngbya majuscula} Back     alignment and structure
>3kg7_A CURH; polyketide synthase, double hotdog fold, dehydratase, lyase; 2.77A {Lyngbya majuscula} Back     alignment and structure
>3hrq_A PKS, aflatoxin biosynthesis polyketide synthase; hot-DOG fold, iterative type I PKS, norsolorinic acid, product template domain; HET: PLM; 1.80A {Aspergillus parasiticus} PDB: 3hrr_A* Back     alignment and structure
>3el6_A Erythromycin dehydratase; dehydratase double hotdog fold CIS-proline, acyltransferase, antibiotic biosynthesis; 1.85A {Saccharopolyspora erythraea} Back     alignment and structure
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Back     alignment and structure
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum} Back     alignment and structure
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A Back     alignment and structure
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Back     alignment and structure
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp} Back     alignment and structure
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis} Back     alignment and structure
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 Back     alignment and structure
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A Back     alignment and structure
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 Back     alignment and structure
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* Back     alignment and structure
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} Back     alignment and structure
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} Back     alignment and structure
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A Back     alignment and structure
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} Back     alignment and structure
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A Back     alignment and structure
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* Back     alignment and structure
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} Back     alignment and structure
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A Back     alignment and structure
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 Back     alignment and structure
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A Back     alignment and structure
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 Back     alignment and structure
>1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 Back     alignment and structure
>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* Back     alignment and structure
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 358
d1nm2a1253 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of m 1e-19
d1mlaa1235 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of m 8e-17
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Length = 253 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Streptomyces coelicolor A3(2) [TaxId: 100226]

 Score = 84.9 bits (209), Expect = 1e-19
 Identities = 37/257 (14%), Positives = 69/257 (26%), Gaps = 56/257 (21%)

Query: 28  LLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNS 87
           L+  G G+Q      D +  P  A  VA     +  +          + D     +   +
Sbjct: 5   LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFG----TKADADEIRDTSVA 60

Query: 88  FVGIACVQIGLVDLLYEMG---------IKPDGLIGHSVGELGCAYADGALTAEQVIYA- 137
              +    I     L               P  + GHSVGE+  A   G L     +   
Sbjct: 61  QPLLVAAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLV 120

Query: 138 -----------------------------AFARGKASKEIDLIKGMMAAVGKSQIHNILF 168
                                          A    +      K    +    +      
Sbjct: 121 RRRGLAMAEAAAVTVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVASGT 180

Query: 169 HKERNLGRY----VYLEEGAQHIPPNAI--VIEIAPHGLLQPIVKKSL-GPETINIALTN 221
                L       V  +   +      +  +IE+ P G L  + K++L G +T+ +    
Sbjct: 181 EVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLAL---- 236

Query: 222 RSSSVDNVEFLLEAIGQ 238
              + D+++   E + +
Sbjct: 237 --KTPDDLDAARELVAE 251
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query358
d1mlaa1235 Catalytic domain of malonyl-CoA ACP transacylase F 100.0
d1nm2a1253 Catalytic domain of malonyl-CoA ACP transacylase F 100.0
d1ispa_179 Lipase A {Bacillus subtilis [TaxId: 1423]} 90.2
d1thta_302 Myristoyl-ACP-specific thioesterase {Vibrio harvey 88.27
d1tqha_242 Carboxylesterase Est {Bacillus stearothermophilus 88.15
d1tcaa_317 Triacylglycerol lipase {Yeast (Candida antarctica) 83.78
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-41  Score=304.82  Aligned_cols=168  Identities=19%  Similarity=0.299  Sum_probs=155.1

Q ss_pred             CEEEEeCCCCcchHHHHHHHhc-cHHHHHHHHHHHHHHhhCCCCcHHHhcCCCCcchhhhhHhHHHHHHHHHHHHHHHHH
Q psy5082          25 PVWLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLY  103 (358)
Q Consensus        25 ~v~fvF~Gqg~~~~~m~~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~~q~~~~a~q~al~~ll~  103 (358)
                      +++|+|||||+||+|||++||+ +|.||+.+++|+++|   |+++.+.+... +...+.++.+.|+++|++|++++++|+
T Consensus         1 q~AfvFpGQGsQ~~gMg~~L~~~~p~~r~~~~~~~~~l---~~~l~~~~~~~-~~~~~~~t~~~qpai~~~~~al~~~l~   76 (235)
T d1mlaa1           1 QFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAAL---GYDLWALTQQG-PAEELNKTWQTQPALLTASVALYRVWQ   76 (235)
T ss_dssp             CEEEEECCTTCCCTTTTHHHHHHCHHHHHHHHHHHHHH---TSCHHHHHHHC-CHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCChhhhHHHHHHHHHHCCHHHHHHHHHHHHHh---CCCHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999998 999999999999999   99998887766 566778899999999999999999999


Q ss_pred             Hc-CCCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhccccccceEEeecCcccccccccc-----------
Q psy5082         104 EM-GIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIHNILFHKE-----------  171 (358)
Q Consensus       104 ~~-Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~~~~~g~m~av~~~~~~~~afHs~-----------  171 (358)
                      ++ |++|++++|||+|||+|++++|++|++|+++++..|+++|+....              ..||||+           
T Consensus        77 ~~~g~~p~~v~GhSlGE~aAl~~aG~ls~e~~~~lv~~Rg~~m~~~~~--------------~~pfHs~~m~~~~~~~~~  142 (235)
T d1mlaa1          77 QQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQEAVP--------------EVPSHCALMKPAADKLAV  142 (235)
T ss_dssp             HTTCCCCSEEEESTHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHSC--------------TSCTTSGGGHHHHHHHHH
T ss_pred             HhcCCCceeeeeccchHHHHHHHcCCcccccHHHHHHHHHHHHHHcCC--------------CCcchhHHhhhhHHHHHH
Confidence            86 999999999999999999999999999999999999999987532              4567776           


Q ss_pred             ----------------------------------ccccCcCchhhhhccCCCCe--EEEEeCCCCCcHHHHHhhc
Q psy5082         172 ----------------------------------RNLGRYVYLEEGAQHIPPNA--IVIEIAPHGLLQPIVKKSL  210 (358)
Q Consensus       172 ----------------------------------~~~~~pV~f~~av~~l~~~~--~~vEiGp~~~l~~~~~~~l  210 (358)
                                                        +|+++||+|.++++.+.+.+  +|||+||+++|++++++++
T Consensus       143 ~l~~v~~~~p~~pviS~~tg~~~~~~~~~~~~l~~ql~~pV~f~~~i~~l~~~g~~~fiEiGP~~~Lt~l~~~i~  217 (235)
T d1mlaa1         143 ELAKITFNAPTVPVVNNVDVKCETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIV  217 (235)
T ss_dssp             HHHTSCCCCCSSCBBCTTTCCBCCSHHHHHHHHHHHHHSCEEHHHHHHHHHHTTCCEEEECSSSSHHHHHHHHHC
T ss_pred             HHhcCCCCCCcceEEeCCCCCCCCCHHHHHHHHHHhccCCccHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHc
Confidence                                              89999999999999998775  7999999999999999998
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Back     information, alignment and structure
>d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Back     information, alignment and structure
>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} Back     information, alignment and structure