Psyllid ID: psy5092

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
MLSMVGIWMGNCFSQGPEYALVTLCTVLLPRPPCYKLSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHGLSLMEILKPQITICCLELF
ccccccccccccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHccccccEEEEEccccccccccEEEccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHcHHccccEEEEEEccccccccccccEEcccccHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHcccccEEEEEcc
cccEEEEEccccccccHHHHHHHHHHHHccccccEEccccccccccccHHHHHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHcccccccEEEEEccccccccccEEEEccccEEcccccccccHHHHHHHHHccccccccHHccHHcccHEEHHHHHHHHHHHccccEEEEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEccccccccccEEEEccccccHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccEEEEEcc
MLSMVGIwmgncfsqgpeYALVTLCTvllprppcyklsnhlrfkcsKQTKELDKQLGNWlnnaelshgparaiisphagyrycgecaafayrqispasvQRIFilgpshyyqlggcalsgakkystplydlkiDSQIYSELEatnkfetismdvdeeehsleMQIPYIAKVMEDFKNEFTIVPVMVgslstgreaeygrifapyladprnlfvissdfchwgdrfrftyydsayGEIHQSIEaldrkspsssiNRVYSILIsrgpsdeeghglslmeILKPQITICCLELF
MLSMVGIWMGNCFSQGPEYALVTLCTVLLPRPPCYKLSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSiealdrkspsssINRVYSILISRGPSDEEGHGLSLMEILKPQITICCLELF
MLSMVGIWMGNCFSQGPEYALVTLCTVLLPRPPCYKLSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHGLSLMEILKPQITICCLELF
***MVGIWMGNCFSQGPEYALVTLCTVLLPRPPCYKLSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVD***HSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSIE***********NRVYSILIS*********GLSLMEILKPQITICCLEL*
**SMVGIWMGNCFSQGPEYALVTLCTVLLPRPPCYKLSNHLRFKCSKQTKELDKQLGNWLNN*****GPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHGLSLMEILKPQITICCLELF
MLSMVGIWMGNCFSQGPEYALVTLCTVLLPRPPCYKLSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSIE*********SINRVYSILISRGPSDEEGHGLSLMEILKPQITICCLELF
*LSMVGIWMGNCFSQGPEYALVTLCTVLLPRPPCYKLSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHGLSLMEILKPQITICCLELF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLSMVGIWMGNCFSQGPEYALVTLCTVLLPRPPCYKLSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHGLSLMEILKPQITICCLELF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query291 2.2.26 [Sep-21-2011]
Q6GNT9297 Protein MEMO1 OS=Xenopus N/A N/A 0.690 0.676 0.582 1e-69
Q91VH6297 Protein MEMO1 OS=Mus musc yes N/A 0.673 0.659 0.591 1e-69
Q4QQR9297 Protein MEMO1 OS=Rattus n yes N/A 0.673 0.659 0.591 2e-69
Q4R6D9297 Protein MEMO1 OS=Macaca f N/A N/A 0.673 0.659 0.591 2e-69
Q9Y316297 Protein MEMO1 OS=Homo sap yes N/A 0.673 0.659 0.591 2e-69
Q803S3297 Protein MEMO1 OS=Danio re yes N/A 0.673 0.659 0.591 3e-69
Q6DJ03297 Protein MEMO1 OS=Xenopus yes N/A 0.673 0.659 0.591 3e-69
Q2HJH7285 Protein MEMO1 OS=Bos taur yes N/A 0.673 0.687 0.586 9e-69
Q22915350 MEMO1 family protein tag- yes N/A 0.687 0.571 0.532 2e-58
Q54NZ1290 Protein MEMO1 homolog OS= yes N/A 0.687 0.689 0.485 4e-52
>sp|Q6GNT9|MEMO1_XENLA Protein MEMO1 OS=Xenopus laevis GN=memo1 PE=2 SV=1 Back     alignment and function desciption
 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 117/201 (58%), Positives = 149/201 (74%)

Query: 46  SKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFIL 105
           S    +L  QL  WL+ A+ S  PARAII+PHAGY YCG CAA AY+Q+ P+  +R+FIL
Sbjct: 18  SASGSQLSAQLDGWLSQAQTSKRPARAIIAPHAGYTYCGSCAAHAYKQVDPSVTRRVFIL 77

Query: 106 GPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQI 165
           GPSH+  L  CALS    Y TPLYDL +D ++Y EL  T  FE +S+  DE+EHS+EM +
Sbjct: 78  GPSHHVALSRCALSTVDIYRTPLYDLHVDQKVYGELWKTGMFERMSLQTDEDEHSIEMHL 137

Query: 166 PYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRF 225
           PY AK ME  K++ TIVPV+VG+LS  +E E+G++F+ YLADP NLFVISSDFCHWG RF
Sbjct: 138 PYTAKAMESHKDDLTIVPVLVGALSESKEQEFGKVFSKYLADPTNLFVISSDFCHWGQRF 197

Query: 226 RFTYYDSAYGEIHQSIEALDR 246
           R+TYYD + GEI++SIE LD+
Sbjct: 198 RYTYYDESQGEIYRSIENLDK 218
May control cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton. Mediator of ERBB2 signaling.
Xenopus laevis (taxid: 8355)
>sp|Q91VH6|MEMO1_MOUSE Protein MEMO1 OS=Mus musculus GN=Memo1 PE=1 SV=1 Back     alignment and function description
>sp|Q4QQR9|MEMO1_RAT Protein MEMO1 OS=Rattus norvegicus GN=Memo1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R6D9|MEMO1_MACFA Protein MEMO1 OS=Macaca fascicularis GN=MEMO1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y316|MEMO1_HUMAN Protein MEMO1 OS=Homo sapiens GN=MEMO1 PE=1 SV=1 Back     alignment and function description
>sp|Q803S3|MEMO1_DANRE Protein MEMO1 OS=Danio rerio GN=memo1 PE=2 SV=1 Back     alignment and function description
>sp|Q6DJ03|MEMO1_XENTR Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 SV=1 Back     alignment and function description
>sp|Q2HJH7|MEMO1_BOVIN Protein MEMO1 OS=Bos taurus GN=MEMO1 PE=2 SV=1 Back     alignment and function description
>sp|Q22915|TG253_CAEEL MEMO1 family protein tag-253 OS=Caenorhabditis elegans GN=tag-253 PE=3 SV=3 Back     alignment and function description
>sp|Q54NZ1|MEMO1_DICDI Protein MEMO1 homolog OS=Dictyostelium discoideum GN=memo1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
193697516291 PREDICTED: protein MEMO1-like [Acyrthosi 0.694 0.694 0.712 1e-84
239789321291 ACYPI001056 [Acyrthosiphon pisum] 0.694 0.694 0.693 5e-81
195329376295 GM25966 [Drosophila sechellia] gi|194120 0.676 0.667 0.700 2e-79
156551830296 PREDICTED: protein MEMO1-like [Nasonia v 0.673 0.662 0.688 2e-79
195571271295 GD20526 [Drosophila simulans] gi|1941995 0.676 0.667 0.695 2e-78
21357419295 CG8031 [Drosophila melanogaster] gi|7299 0.676 0.667 0.690 3e-78
380028966303 PREDICTED: protein MEMO1-like [Apis flor 0.673 0.646 0.688 7e-78
194901576295 GG17083 [Drosophila erecta] gi|190652031 0.676 0.667 0.680 9e-78
195446372295 GK10855 [Drosophila willistoni] gi|19416 0.694 0.684 0.658 5e-77
91094281295 PREDICTED: similar to CG8031 CG8031-PA [ 0.673 0.664 0.673 5e-77
>gi|193697516|ref|XP_001942616.1| PREDICTED: protein MEMO1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 144/202 (71%), Positives = 172/202 (85%)

Query: 46  SKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFIL 105
           ++  KEL  QL NWL  AEL+HGPARAII+PHAGY+YCG CAAFAYRQISP  VQRIFIL
Sbjct: 14  NESAKELSTQLENWLGAAELTHGPARAIIAPHAGYQYCGACAAFAYRQISPFVVQRIFIL 73

Query: 106 GPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQI 165
           GPSH  +L GCALS A KYSTP YDL+ID+++Y ELE+T  FE +SM VDE+EHS+EMQ+
Sbjct: 74  GPSHNVRLSGCALSSAVKYSTPFYDLQIDNEVYEELESTGHFERMSMKVDEDEHSIEMQL 133

Query: 166 PYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRF 225
           PYIAKVM+D+K++FTIVPVMVGSLST +E+ YG IFA YLADP+NLF+ISSDFCHWG RF
Sbjct: 134 PYIAKVMQDYKDKFTIVPVMVGSLSTEKESLYGHIFAQYLADPKNLFIISSDFCHWGQRF 193

Query: 226 RFTYYDSAYGEIHQSIEALDRK 247
           R+T+Y+ ++GEIHQSI  LD K
Sbjct: 194 RYTFYEKSWGEIHQSITTLDHK 215

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|239789321|dbj|BAH71291.1| ACYPI001056 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195329376|ref|XP_002031387.1| GM25966 [Drosophila sechellia] gi|194120330|gb|EDW42373.1| GM25966 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|156551830|ref|XP_001604210.1| PREDICTED: protein MEMO1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|195571271|ref|XP_002103627.1| GD20526 [Drosophila simulans] gi|194199554|gb|EDX13130.1| GD20526 [Drosophila simulans] Back     alignment and taxonomy information
>gi|21357419|ref|NP_650252.1| CG8031 [Drosophila melanogaster] gi|7299707|gb|AAF54889.1| CG8031 [Drosophila melanogaster] gi|16769746|gb|AAL29092.1| LP04475p [Drosophila melanogaster] gi|220944484|gb|ACL84785.1| CG8031-PA [synthetic construct] gi|220954280|gb|ACL89683.1| CG8031-PA [synthetic construct] Back     alignment and taxonomy information
>gi|380028966|ref|XP_003698154.1| PREDICTED: protein MEMO1-like [Apis florea] Back     alignment and taxonomy information
>gi|194901576|ref|XP_001980328.1| GG17083 [Drosophila erecta] gi|190652031|gb|EDV49286.1| GG17083 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195446372|ref|XP_002070750.1| GK10855 [Drosophila willistoni] gi|194166835|gb|EDW81736.1| GK10855 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|91094281|ref|XP_970827.1| PREDICTED: similar to CG8031 CG8031-PA [Tribolium castaneum] gi|270014397|gb|EFA10845.1| hypothetical protein TcasGA2_TC001622 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
ZFIN|ZDB-GENE-030131-5571297 memo1 "mediator of cell motili 0.673 0.659 0.591 6.7e-65
UNIPROTKB|F1PRD0277 MEMO1 "Uncharacterized protein 0.687 0.722 0.585 8.5e-65
UNIPROTKB|Q9Y316297 MEMO1 "Protein MEMO1" [Homo sa 0.687 0.673 0.585 8.5e-65
UNIPROTKB|F2Z5F8297 MEMO1 "Uncharacterized protein 0.687 0.673 0.585 8.5e-65
UNIPROTKB|Q4R6D9297 MEMO1 "Protein MEMO1" [Macaca 0.687 0.673 0.585 8.5e-65
MGI|MGI:1924140297 Memo1 "mediator of cell motili 0.687 0.673 0.585 8.5e-65
RGD|1309929297 Memo1 "mediator of cell motili 0.687 0.673 0.585 8.5e-65
UNIPROTKB|F1LNE5278 Memo1 "Protein MEMO1" [Rattus 0.687 0.719 0.585 8.5e-65
UNIPROTKB|F1MLD8277 MEMO1 "Protein MEMO1" [Bos tau 0.687 0.722 0.58 2.3e-64
UNIPROTKB|Q2HJH7285 MEMO1 "Protein MEMO1" [Bos tau 0.687 0.701 0.58 2.3e-64
ZFIN|ZDB-GENE-030131-5571 memo1 "mediator of cell motility 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 116/196 (59%), Positives = 153/196 (78%)

Query:    51 ELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHY 110
             +L+ QL  WL+ A+   GPARAII+PHAGY YCG CAA AY+Q+ P+  +R+FILGPSH+
Sbjct:    23 QLNAQLEGWLSQAQSIAGPARAIIAPHAGYTYCGACAAHAYKQVDPSITRRVFILGPSHH 82

Query:   111 YQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAK 170
               L  CALS A+ Y TPLYDL+ID ++Y++L  T  FE +S+  DE+EHS+EM +PY AK
Sbjct:    83 VPLSRCALSPAEVYRTPLYDLRIDQKVYADLWKTGMFERMSLQTDEDEHSIEMHLPYTAK 142

Query:   171 VMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYY 230
              ME+ K+EF+IVPV+VG+LS  +E EYG++ + YLADP NLF+IS DFCHWG RFR+TYY
Sbjct:   143 AMENHKDEFSIVPVLVGALSGSKEQEYGKLLSKYLADPSNLFIISPDFCHWGQRFRYTYY 202

Query:   231 DSAYGEIHQSIEALDR 246
             D + GEI++SIE LD+
Sbjct:   203 DESQGEIYRSIEHLDK 218
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|F1PRD0 MEMO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y316 MEMO1 "Protein MEMO1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5F8 MEMO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R6D9 MEMO1 "Protein MEMO1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
MGI|MGI:1924140 Memo1 "mediator of cell motility 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309929 Memo1 "mediator of cell motility 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNE5 Memo1 "Protein MEMO1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MLD8 MEMO1 "Protein MEMO1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJH7 MEMO1 "Protein MEMO1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q803S3MEMO1_DANRENo assigned EC number0.59180.67350.6599yesN/A
Q6DJ03MEMO1_XENTRNo assigned EC number0.59180.67350.6599yesN/A
Q22915TG253_CAEELNo assigned EC number0.53200.68720.5714yesN/A
Q9Y316MEMO1_HUMANNo assigned EC number0.59180.67350.6599yesN/A
Q2HJH7MEMO1_BOVINNo assigned EC number0.58670.67350.6877yesN/A
Q4QQR9MEMO1_RATNo assigned EC number0.59180.67350.6599yesN/A
Q10212YAY4_SCHPONo assigned EC number0.38640.69750.6569yesN/A
Q91VH6MEMO1_MOUSENo assigned EC number0.59180.67350.6599yesN/A
Q54NZ1MEMO1_DICDINo assigned EC number0.4850.68720.6896yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
cd07361266 cd07361, MEMO_like, Memo (mediator of ErbB2-driven 7e-81
pfam01875274 pfam01875, Memo, Memo-like protein 2e-52
TIGR04336269 TIGR04336, AmmeMemoSam_B, AmmeMemoRadiSam system p 2e-40
COG1355279 COG1355, COG1355, Predicted dioxygenase [General f 2e-37
cd07320260 cd07320, Extradiol_Dioxygenase_3B_like, Subunit B 1e-25
PRK00782267 PRK00782, PRK00782, hypothetical protein; Provisio 1e-18
>gnl|CDD|153373 cd07361, MEMO_like, Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility Back     alignment and domain information 
 Score =  244 bits (626), Expect = 7e-81
 Identities = 81/199 (40%), Positives = 103/199 (51%), Gaps = 20/199 (10%)

Query: 51  ELDKQLGNWLNNAE--LSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPS 108
           EL +QL  +L  A       P +AII PHAGY Y G  AA AY  + P   +R+ ILGPS
Sbjct: 15  ELRRQLEAFLAAAPGPPPKEPPKAIIVPHAGYVYSGPVAAHAYAALDPGKPKRVVILGPS 74

Query: 109 HYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYI 168
           H     GCALS A  + TPL D+ +D ++  EL     F        EEEHSLE+Q+P++
Sbjct: 75  HTGYGRGCALSSAGAWETPLGDVPVDRELVEELLKLGGFIVDDELAHEEEHSLEVQLPFL 134

Query: 169 AKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFT 228
             ++ DFK    IVP++VG  S           + YL DP  L VISSDF H+G R    
Sbjct: 135 QYLLPDFK----IVPILVGDQSPEAAEALAEALSKYLLDPDTLIVISSDFSHYGPR---- 186

Query: 229 YYDSAYGEIHQSIEALDRK 247
                     +S E LDRK
Sbjct: 187 ----------ESAERLDRK 195

This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome. Length = 266
>gnl|CDD|216756 pfam01875, Memo, Memo-like protein Back     alignment and domain information
>gnl|CDD|234551 TIGR04336, AmmeMemoSam_B, AmmeMemoRadiSam system protein B Back     alignment and domain information
>gnl|CDD|224274 COG1355, COG1355, Predicted dioxygenase [General function prediction only] Back     alignment and domain information
>gnl|CDD|153371 cd07320, Extradiol_Dioxygenase_3B_like, Subunit B of Class III Extradiol ring-cleavage dioxygenases Back     alignment and domain information
>gnl|CDD|234836 PRK00782, PRK00782, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 291
PF01875276 Memo: Memo-like protein; InterPro: IPR002737 This 100.0
COG1355279 Predicted dioxygenase [General function prediction 100.0
KOG3086|consensus296 100.0
cd07361266 MEMO_like Memo (mediator of ErbB2-driven cell moti 100.0
PRK00782267 hypothetical protein; Provisional 100.0
cd07320260 Extradiol_Dioxygenase_3B_like Subunit B of Class I 99.98
cd07365310 MhpB_like Subunit B of the Class III Extradiol rin 99.93
cd07951256 ED_3B_N_AMMECR1 The N-terminal domain, an extradio 99.93
PRK03881 467 hypothetical protein; Provisional 99.91
cd07952256 ED_3B_like Uncharacterized class III extradiol dio 99.91
PRK13358269 protocatechuate 4,5-dioxygenase subunit beta; Prov 99.89
cd07359271 PCA_45_Doxase_B_like Subunit B of the Class III Ex 99.87
PRK13370313 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase 99.86
PRK13364278 protocatechuate 4,5-dioxygenase subunit beta; Prov 99.78
cd07370280 HPCD The Class III extradiol dioxygenase, homoprot 99.76
cd07368277 PhnC_Bs_like PhnC is a Class III Extradiol ring-cl 99.74
cd07372294 2A5CPDO_B The beta subunit of the Class III extrad 99.74
TIGR02298282 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase 99.73
cd07367268 CarBb CarBb is the B subunit of the Class III Extr 99.71
cd07950277 Gallate_Doxase_N The N-terminal domain of the Clas 99.71
cd07373271 2A5CPDO_A The alpha subunit of the Class III extra 99.7
cd07371268 2A5CPDO_AB The alpha and beta subunits of the Clas 99.69
cd07949276 PCA_45_Doxase_B_like_1 The B subunit of unknown Cl 99.69
PRK13365279 protocatechuate 4,5-dioxygenase subunit beta; Prov 99.69
PRK13363335 protocatechuate 4,5-dioxygenase subunit beta; Prov 99.68
cd07369329 PydA_Rs_like PydA is a Class III Extradiol ring-cl 99.67
PRK13366284 protocatechuate 4,5-dioxygenase subunit beta; Prov 99.64
cd07362272 HPCD_like Class III extradiol dioxygenases with si 99.61
cd07364277 PCA_45_Dioxygenase_B Subunit B of the Class III ex 99.6
cd07366328 3MGA_Dioxygenase Subunit B of the Class III Extrad 99.59
PF02900272 LigB: Catalytic LigB subunit of aromatic ring-open 99.56
PRK13367 420 protocatechuate 4,5-dioxygenase; Provisional 99.53
cd07363253 45_DOPA_Dioxygenase The Class III extradiol dioxyg 99.53
PRK13373344 putative dioxygenase; Provisional 99.44
PRK13372444 pcmA protocatechuate 4,5-dioxygenase; Provisional 99.32
COG3885261 Uncharacterized conserved protein [Function unknow 99.22
COG3384268 Aromatic ring-opening dioxygenase, catalytic LigB 98.71
PRK10628246 LigB family dioxygenase; Provisional 98.29
>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life Back     alignment and domain information 
Probab=100.00  E-value=1.4e-64  Score=470.26  Aligned_cols=238  Identities=35%  Similarity=0.480  Sum_probs=176.7

Q ss_pred             CcCccCcccCCCHHHHHHHHHHHhhhccCCCCCceEEEccCCcccccHHHHHHHHHhhCCCCCCEEEEECCCCCCCCCce
Q psy5092          37 LSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGC  116 (291)
Q Consensus        37 ~~a~AG~fYP~~~~eL~~~l~~~l~~~~~~~~~~~aiIvPHAGy~ySG~~Aa~ay~~l~~~~p~~VVILGP~H~~~~~g~  116 (291)
                      +|+|||+|||+|+++|+++|+.|+++...+. +++|+|+|||||+|||++||++|+.|+..+++|||||||||++.++++
T Consensus         1 ~pa~AG~fYp~~~~~L~~~l~~~~~~~~~~~-~~~~iI~PHAGy~ySG~~aa~ay~~l~~~~~~~vvilGpsH~~~~~~~   79 (276)
T PF01875_consen    1 EPAVAGSFYPADPEELRAQLEAFLEKAPGPG-PARAIIVPHAGYVYSGPTAAHAYAALKESKPKRVVILGPSHTGYGDGI   79 (276)
T ss_dssp             --TTTTTSS-S-HHHHHHHHH-HHHHTS----S-SEEEE--S-HHHHHHHHHHHHTT--TTT--EEEEEEE-SSS--SSE
T ss_pred             CCCcccCCCCCCHHHHHHHHHHHHhcCCCCC-CCCEEECCCccHHhHHHHHHHHHHHHhhcCCCEEEEECCCccCCCCCe
Confidence            5899999999999999999999998665433 389999999999999999999999999888999999999999999999


Q ss_pred             eecCCCccccCCCCCCCcHHHHHHHHhcCCcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCCCHHHHHH
Q psy5092         117 ALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAE  196 (291)
Q Consensus       117 al~~~~~~~TPLG~v~vD~el~~~L~~~~~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~~~~~~~~  196 (291)
                      ++++.+.|+||||++++|++++++|.+..++...++.+|..|||+|||||||||++++. ++++||||+||..+.+.+++
T Consensus        80 ~~~~~~~~~TPlG~v~vD~e~~~~L~~~~~~~~~~~~~h~~EHSlEvqlPFLq~~~~~~-~~~~IVPI~vg~~~~~~~~~  158 (276)
T PF01875_consen   80 AVSPFDSWETPLGEVPVDSELAEELAKNFPFFEFDDEAHEEEHSLEVQLPFLQYLFPDR-RDFKIVPILVGDQSPETAKE  158 (276)
T ss_dssp             EE-SSSEE--SS--EEB-HHHHHHHHHTT-E-EE--HHHHH--TTGGGHHHHHHHTGGG-TS-EEEEEEE-S--HHHHHH
T ss_pred             EeccCCeEECCCcccccCHHHHHHHHhcCCCcccchhhccccCcEEEHHHHHHHHhccC-CceEEEEEEecCCCHHHHHH
Confidence            99999999999999999999999999987776678889999999999999999999321 13999999999999999999


Q ss_pred             HHHHHHhhhcCCCeEEEEecCCcccCcCcccccCCc-----c---hHHHHHHHHhcChhchhhhhhhhhccccccCCCCC
Q psy5092         197 YGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDS-----A---YGEIHQSIEALDRKSPSSSINRVYSILISRGPSDE  268 (291)
Q Consensus       197 lg~~L~~~~~~~~~liVaSsDLSH~g~~~gy~p~~~-----~---D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~~~~  268 (291)
                      +|++|.+++++++++||+||||||||++||+.+...     .   |+..+++|+++|++++.+.++++.+.  .|    |
T Consensus       159 ~a~~L~~~~~~~~~liV~SsD~sHyg~rfg~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~t--~C----G  232 (276)
T PF01875_consen  159 LAEALAEYLKDEGTLIVASSDFSHYGPRFGDAPKPEEIAEKIEALDREAIEAIEALDPEGFYEYLKETNNT--AC----G  232 (276)
T ss_dssp             HHHHHHHHHTSTTEEEEEE----EEBGGGT--GGGSSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH------T----T
T ss_pred             HHHHHHHHHcCCCEEEEEeCccccccccccCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCc--ee----c
Confidence            999999999988899999999999999999876442     2   99999999999999999999998877  89    8


Q ss_pred             cchhhHHHHhhcCc
Q psy5092         269 EGHGLSLMEILKPQ  282 (291)
Q Consensus       269 ~~~~~~~~~~~~~~  282 (291)
                      .|.+..+|+++|..
T Consensus       233 ~~pi~~~l~~~~~~  246 (276)
T PF01875_consen  233 RGPIAVLLEAAKAL  246 (276)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHc
Confidence            99999999998753

The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.
>COG1355 Predicted dioxygenase [General function prediction only] Back     alignment and domain information
>KOG3086|consensus Back     alignment and domain information
>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility Back     alignment and domain information
>PRK00782 hypothetical protein; Provisional Back     alignment and domain information
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases Back     alignment and domain information
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate Back     alignment and domain information
>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain Back     alignment and domain information
>PRK03881 hypothetical protein; Provisional Back     alignment and domain information
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases Back     alignment and domain information
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional Back     alignment and domain information
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes Back     alignment and domain information
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional Back     alignment and domain information
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional Back     alignment and domain information
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate Back     alignment and domain information
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway Back     alignment and domain information
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol Back     alignment and domain information
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase Back     alignment and domain information
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol Back     alignment and domain information
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate Back     alignment and domain information
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol Back     alignment and domain information
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol Back     alignment and domain information
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase Back     alignment and domain information
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional Back     alignment and domain information
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional Back     alignment and domain information
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP) Back     alignment and domain information
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional Back     alignment and domain information
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate Back     alignment and domain information
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate Back     alignment and domain information
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate Back     alignment and domain information
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms Back     alignment and domain information
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional Back     alignment and domain information
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine Back     alignment and domain information
>PRK13373 putative dioxygenase; Provisional Back     alignment and domain information
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional Back     alignment and domain information
>COG3885 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10628 LigB family dioxygenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
3bd0_A293 Crystal Structure Of Memo, Form Ii Length = 293 2e-70
3bcz_A293 Crystal Structure Of Memo Length = 293 1e-68
>pdb|3BD0|A Chain A, Crystal Structure Of Memo, Form Ii Length = 293 Back     alignment and structure 
Iteration: 1

 Score =  261 bits (668), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 150/196 (76%)
Query: 51  ELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHY 110
           +L+ QL  WL+  + +  PARAII+PHAGY YCG CAA AY+Q+ P+  +RIFILGPSH+
Sbjct: 19  QLNAQLEGWLSQVQSTKRPARAIIAPHAGYTYCGSCAAHAYKQVDPSITRRIFILGPSHH 78
Query: 111 YQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAK 170
             L  CALS    Y TPLYDL+ID +IY EL  T  FE +S+  DE+EHS+EM +PY AK
Sbjct: 79  VPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAK 138
Query: 171 VMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYY 230
            ME  K+EFTI+PV+VG+LS  +E E+G++F+ YLADP NLFV+SSDFCHWG RFR++YY
Sbjct: 139 AMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYY 198
Query: 231 DSAYGEIHQSIEALDR 246
           D + GEI++SIE LD+
Sbjct: 199 DESQGEIYRSIEHLDK 214
>pdb|3BCZ|A Chain A, Crystal Structure Of Memo Length = 293 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
3bcz_A293 Protein MEMO1; alpha/beta structure, peptide bindi 2e-75
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A Length = 293 Back     alignment and structure
 Score =  231 bits (591), Expect = 2e-75
 Identities = 116/198 (58%), Positives = 150/198 (75%)

Query: 50  KELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSH 109
            +L+ QL  WL+  + +  PARAII+PHAGY YCG CAA AY+Q+ P+  +RIFILGPSH
Sbjct: 18  PQLNAQLEGWLSQVQSTKRPARAIIAPHAGYTYCGSCAAHAYKQVDPSITRRIFILGPSH 77

Query: 110 YYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIA 169
           +  L  CALS    Y TPLYDL+ID +IY EL  T  FE +S+  DE+EHS+EM +PY A
Sbjct: 78  HVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTA 137

Query: 170 KVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTY 229
           K ME  K+EFTI+PV+VG+LS  +E E+G++F+ YLADP NLFV+SSDFCHWG RFR++Y
Sbjct: 138 KAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSY 197

Query: 230 YDSAYGEIHQSIEALDRK 247
           YD + GEI++SIE LD+ 
Sbjct: 198 YDESQGEIYRSIEHLDKM 215

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
3bcz_A293 Protein MEMO1; alpha/beta structure, peptide bindi 100.0
3vsj_A271 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; 99.9
1b4u_B302 LIGA, LIGB, protocatechuate 4,5-dioxygenase; extra 99.88
3vsj_B312 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; 99.84
2pw6_A271 Uncharacterized protein YGID; JW3007, escherichia 99.41
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A Back     alignment and structure
Probab=100.00  E-value=2.5e-64  Score=470.47  Aligned_cols=242  Identities=48%  Similarity=0.838  Sum_probs=217.3

Q ss_pred             CccCcCccCcccCCCHHHHHHHHHHHhhhccCCCCCceEEEccCCcccccHHHHHHHHHhhCCCCCCEEEEECCCCCCCC
Q psy5092          34 CYKLSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQL  113 (291)
Q Consensus        34 ~iR~~a~AG~fYP~~~~eL~~~l~~~l~~~~~~~~~~~aiIvPHAGy~ySG~~Aa~ay~~l~~~~p~~VVILGP~H~~~~  113 (291)
                      .+|+|+|||+|||+|+++|++||+.||..++..+.+++|+|+|||||+|||++||+||+.|+..+|||||||||||+..+
T Consensus         2 ~~R~~~~AG~~Yp~~~~~L~~~l~~~l~~~~~~~~~~~~iI~PHAGy~ysG~~aa~ay~~l~~~~p~~VvilGP~H~~~~   81 (293)
T 3bcz_A            2 VCREASHAGSWYTASGPQLNAQLEGWLSQVQSTKRPARAIIAPHAGYTYCGSCAAHAYKQVDPSITRRIFILGPSHHVPL   81 (293)
T ss_dssp             CEECCTTBTTTBCSCHHHHHHHHHHHHTTSCCCSCSCSEEEECCSCHHHHHHHHHHHHTTCCTTTCCEEEEEEECSSSCC
T ss_pred             CccCCccccCCCCCCHHHHHHHHHHHHhhCCCCCCCceEEEECCCCccccHHHHHHHHHHhccCCCCEEEEECCCCCCCC
Confidence            57999999999999999999999999977653233479999999999999999999999998778999999999999999


Q ss_pred             CceeecCCCccccCCCCCCCcHHHHHHHHhcCCcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCCCHHH
Q psy5092         114 GGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGR  193 (291)
Q Consensus       114 ~g~al~~~~~~~TPLG~v~vD~el~~~L~~~~~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~~~~~  193 (291)
                      .++++++.+.|+||||++++|++++++|.+...+..++...|..|||+||||||||+.+++..++++||||+||..+.++
T Consensus        82 ~~~a~~~~~~~~TPlG~l~vD~el~~~L~~~~~~~~~d~~~~~~EHSlEv~LPfL~~~~~~~~~~~~IVPI~vg~~~~~~  161 (293)
T 3bcz_A           82 SRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESK  161 (293)
T ss_dssp             SSEEECSCSEECCSSCCEEBCHHHHHHHHHTSCEEECCHHHHHHCCTTGGGHHHHHHHTGGGTTSCEEEEEEECCCCHHH
T ss_pred             CceEEccCCceECCCccCCCCHHHHHHHHhcCCcccccccccchheEEEeeHHHHHHHhCCCCCCceEEEEEcCCCCHHH
Confidence            99999999999999999999999999999987777778889999999999999999998421137999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCeEEEEecCCcccCcCcccccCC-----------cchHHHHHHHHhcChhchhhhhhhhhccccc
Q psy5092         194 EAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYD-----------SAYGEIHQSIEALDRKSPSSSINRVYSILIS  262 (291)
Q Consensus       194 ~~~lg~~L~~~~~~~~~liVaSsDLSH~g~~~gy~p~~-----------~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~  262 (291)
                      ++++|++|++++++.+++||+||||||||+||||+|+.           ..|+.++++|+++|+++|++.++++.+  -.
T Consensus       162 ~~~~g~~l~~~~~~~~~l~V~SsDlsH~g~~fgy~~~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~--t~  239 (293)
T 3bcz_A          162 EQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHN--TI  239 (293)
T ss_dssp             HHHHHHHHHHHHTCTTEEEEEECCCCEEBGGGTBCCCCGGGCSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCC--CC
T ss_pred             HHHHHHHHHHHHhCCCeEEEEeCCccCCCCCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc--Cc
Confidence            99999999999988899999999999999999999873           269999999999999999998888665  35


Q ss_pred             cCCCCCcchhhHHHHhhcC
Q psy5092         263 RGPSDEEGHGLSLMEILKP  281 (291)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~  281 (291)
                      |    |.+.+..+|..++.
T Consensus       240 C----G~~pi~~~l~a~~~  254 (293)
T 3bcz_A          240 C----GRHPIGVLLNAITE  254 (293)
T ss_dssp             T----THHHHHHHHHHHHH
T ss_pred             C----cHHHHHHHHHHHHH
Confidence            7    66677777776653
>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A* Back     alignment and structure
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B Back     alignment and structure
>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B* Back     alignment and structure
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
d1b4ub_298 LigB subunit of an aromatic-ring-opening dioxygena 99.57
d2pw6a1258 Uncharacterized protein YgiD {Escherichia coli [Ta 98.96
>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening dioxygenase LigAB {Pseudomonas paucimobilis [TaxId: 13689]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: LigB subunit of an aromatic-ring-opening dioxygenase LigAB
species: Pseudomonas paucimobilis [TaxId: 13689]

Probab=99.57  E-value=7e-15  Score=135.14  Aligned_cols=157  Identities=13%  Similarity=0.090  Sum_probs=110.4

Q ss_pred             CCCCEEEEECCCCCCCCCc-----eeecCCCcccc--------CCCCCCCcHHHHHHHHhcC---CcccccCCCCCCCcc
Q psy5092          97 ASVQRIFILGPSHYYQLGG-----CALSGAKKYST--------PLYDLKIDSQIYSELEATN---KFETISMDVDEEEHS  160 (291)
Q Consensus        97 ~~p~~VVILGP~H~~~~~g-----~al~~~~~~~T--------PLG~v~vD~el~~~L~~~~---~~~~~d~~~h~~EHS  160 (291)
                      .+||+|||+||+|...+..     +++...+.+..        +.-+++.|.+++++|.+..   +++......-..||+
T Consensus        48 ~kPDviVVvs~DH~~~f~~~~~p~f~ig~~~~~~~~~~~~~~~~~~~~~g~~eLA~~i~~~~~~~g~d~~~~~~~~lDHg  127 (298)
T d1b4ub_          48 NMPDVVILVYNDHASAFDMNIIPTFAIGCAETFKPADEGWGPRPVPDVKGHPDLAWHIAQSLILDEFDMTIMNQMDVDHG  127 (298)
T ss_dssp             TSCSEEEEEECCCSSSCCTTEEESBEEECSSEECBCBCSSSBCSSCCEECCHHHHHHHHHHHHHTTCCCEEESSCCBCHH
T ss_pred             cCcCEEEEEeccHHHHhccccCCcccccccccccCCccccCccCCCCCCCCHHHHHHHHHHHHHCCCCcccccCcCcccc
Confidence            3799999999999876532     33322222221        2234778999998887643   555443445578999


Q ss_pred             hhchHHHHHHHhhccCCCcEEEEEEcCC-----CCHHHHHHHHHHHHhhhc----CCCeEEEEecCCcccCcCccc-ccC
Q psy5092         161 LEMQIPYIAKVMEDFKNEFTIVPVMVGS-----LSTGREAEYGRIFAPYLA----DPRNLFVISSDFCHWGDRFRF-TYY  230 (291)
Q Consensus       161 iEVqLPFLq~~~~~~~~~~~IVPI~vg~-----~~~~~~~~lg~~L~~~~~----~~~~liVaSsDLSH~g~~~gy-~p~  230 (291)
                      .-|+|.||..-..+  ..+++|||.++.     .+.+++++||++|+++++    |+|++||+|+||||+..--++ ...
T Consensus       128 ~~vPl~~l~~~~~~--~~ipvVpi~~n~~~~p~~s~~r~~~lG~ai~~ai~~~~~d~rV~viaSGgLSH~l~~~~~~~~~  205 (298)
T d1b4ub_         128 CTVPLSMIFGEPEE--WPCKVIPFPVNVVTYPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRAGLIN  205 (298)
T ss_dssp             HHHHHHHHHCSCSS--CSSEEEEEEBCCSSSCCCCHHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSSTTTTBCC
T ss_pred             cceeHHHhcCcccc--CCCceEEEeeeccCCCCCCHHHHHHHHHHHHHHHHhcccCCCEEEEEeCcccccCCCCCCCCCC
Confidence            99999998654411  348999999864     478999999999999885    578999999999998653221 122


Q ss_pred             CcchHHHHHHHHhcChhchhhhhhhh
Q psy5092         231 DSAYGEIHQSIEALDRKSPSSSINRV  256 (291)
Q Consensus       231 ~~~D~~iie~I~~lD~~~l~~~~~~~  256 (291)
                      .+.|+.+++.+++ |.+.+.....++
T Consensus       206 ~efD~~~l~~l~~-~~~~~~~~~~~e  230 (298)
T d1b4ub_         206 KEFDLNFIDKLIS-DPEELSKMPHIQ  230 (298)
T ss_dssp             HHHHHHHHHHHHH-CHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHhc-ChHhhhhCCcHH
Confidence            3479999999986 656555554433
>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure