Psyllid ID: psy5152

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
LHYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNCRPGI
cEEEEEEcccccccccccHHcccccccccccEEEEEccccEEEEEEccEEEEEEccccccccccccccccccccccccEEEEEccccEEEEEEcccEEEEcccccccccccccccccccccccccccEEEEEccccEEEEEcccEEEEEccccEEEccccc
cEEEEEccccccccccccHHHccccccccccEEEEEccccEEEEEEccEEEEEcccEEcccccEEHHHHcccccccccEEEEcccccEEEEEEccEEEEEEccEEEEEEccccccccccccccccccEEEEEcccEEEEEEccEEEEEccccEEEcccccc
lhywkltddgiaegypkliskswiglpgqidaaftyskngktyffkgskywrytgksmddgypkdisegftgipdniDAALVwsgngkiyffkgskfwkfdpsskppvkstypkptsnwegipdnIDAALHytngytyffkgsqywrfndksfsvncrpgi
lhywkltddgiAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNCRPGI
LHYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNCRPGI
**YWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKF******************WEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSV******
LHYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFS*******
LHYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDP*************TSNWEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNCRPGI
LHYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNCRPGI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LHYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNCRPGI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query161 2.2.26 [Sep-21-2011]
Q95220582 Matrix metalloproteinase- yes N/A 0.944 0.261 0.416 4e-29
P50281582 Matrix metalloproteinase- yes N/A 0.944 0.261 0.416 6e-29
Q9GLE4582 Matrix metalloproteinase- yes N/A 0.944 0.261 0.416 8e-29
P53690582 Matrix metalloproteinase- yes N/A 0.944 0.261 0.416 8e-29
Q10739582 Matrix metalloproteinase- yes N/A 0.944 0.261 0.416 9e-29
Q5RES1582 Matrix metalloproteinase- yes N/A 0.944 0.261 0.410 2e-28
P51512607 Matrix metalloproteinase- no N/A 0.944 0.250 0.403 2e-28
Q9WTR0607 Matrix metalloproteinase- no N/A 0.944 0.250 0.403 5e-28
O35548607 Matrix metalloproteinase- no N/A 0.944 0.250 0.403 5e-28
Q9R0S2618 Matrix metalloproteinase- no N/A 0.944 0.245 0.397 6e-28
>sp|Q95220|MMP14_RABIT Matrix metalloproteinase-14 OS=Oryctolagus cuniculus GN=MMP14 PE=2 SV=2 Back     alignment and function desciption
 Score =  127 bits (318), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 100/156 (64%), Gaps = 4/156 (2%)

Query: 3   YWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGY 62
           +W++ ++ + +GYP  I + W GLP  I+ A+   K+GK  FFKG K+W +   S++ GY
Sbjct: 341 FWRVRNNQVMDGYPMPIGQLWRGLPASINTAYE-RKDGKFVFFKGDKHWVFDEASLEPGY 399

Query: 63  PKDISEGFTGIP-DNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEG 121
           PK I E   G+P D IDAAL W  NGK YFF+G+K+++F+   +  V S YPK    WEG
Sbjct: 400 PKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELR-AVDSEYPKNIKVWEG 458

Query: 122 IPDNIDAALHYTNG-YTYFFKGSQYWRFNDKSFSVN 156
           IP++   +   ++  +TYF+KG++YW+FN++   V 
Sbjct: 459 IPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKLKVE 494
Seems to specifically activate progelatinase A. May thus trigger invasion by tumor cells by activating progelatinase A on the tumor cell surface (By similarity). May be involved in actin cytoskeleton reorganization by cleaving PTK7.
Oryctolagus cuniculus (taxid: 9986)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 8EC: 0
>sp|P50281|MMP14_HUMAN Matrix metalloproteinase-14 OS=Homo sapiens GN=MMP14 PE=1 SV=3 Back     alignment and function description
>sp|Q9GLE4|MMP14_BOVIN Matrix metalloproteinase-14 OS=Bos taurus GN=MMP14 PE=2 SV=1 Back     alignment and function description
>sp|P53690|MMP14_MOUSE Matrix metalloproteinase-14 OS=Mus musculus GN=Mmp14 PE=2 SV=3 Back     alignment and function description
>sp|Q10739|MMP14_RAT Matrix metalloproteinase-14 OS=Rattus norvegicus GN=Mmp14 PE=2 SV=2 Back     alignment and function description
>sp|Q5RES1|MMP14_PONAB Matrix metalloproteinase-14 OS=Pongo abelii GN=MMP14 PE=2 SV=1 Back     alignment and function description
>sp|P51512|MMP16_HUMAN Matrix metalloproteinase-16 OS=Homo sapiens GN=MMP16 PE=1 SV=2 Back     alignment and function description
>sp|Q9WTR0|MMP16_MOUSE Matrix metalloproteinase-16 OS=Mus musculus GN=Mmp16 PE=2 SV=3 Back     alignment and function description
>sp|O35548|MMP16_RAT Matrix metalloproteinase-16 OS=Rattus norvegicus GN=Mmp16 PE=2 SV=1 Back     alignment and function description
>sp|Q9R0S2|MMP24_MOUSE Matrix metalloproteinase-24 OS=Mus musculus GN=Mmp24 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query161
172356113 561 matrix metalloproteinase 1 isoform 1 [Bo 0.962 0.276 0.801 7e-71
172356221 538 matrix metalloproteinase 1 isoform 2 [Bo 0.962 0.288 0.801 7e-71
350284804 556 MMP variant 1 [Manduca sexta] 0.962 0.278 0.794 1e-70
357619633 485 matrix metalloproteinase 1 isoform 1 [Da 0.962 0.319 0.801 9e-70
328724693 557 PREDICTED: matrix metalloproteinase-16-l 0.956 0.276 0.793 8e-69
328724691 547 PREDICTED: matrix metalloproteinase-16-l 0.956 0.281 0.793 9e-69
328724695 583 PREDICTED: matrix metalloproteinase-16-l 0.956 0.264 0.793 1e-68
195027856 587 GH21566 [Drosophila grimshawi] gi|193902 0.956 0.262 0.741 1e-64
195489771 586 GE11424 [Drosophila yakuba] gi|194178979 0.956 0.262 0.735 2e-64
206597316 613 FI01410p [Drosophila melanogaster] 0.950 0.249 0.733 3e-64
>gi|172356113|ref|NP_001116499.1| matrix metalloproteinase 1 isoform 1 [Bombyx mori] gi|169730452|gb|ACA64804.1| matrix metalloproteinase variant 1 [Bombyx mori] Back     alignment and taxonomy information
 Score =  271 bits (693), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 125/156 (80%), Positives = 141/156 (90%), Gaps = 1/156 (0%)

Query: 2   HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
           HYW+LT+DG+A GYP+LIS++W GLPG IDAAFTY KNGKTYFFKGSKYWRY G+ MD  
Sbjct: 344 HYWRLTEDGVAAGYPRLISRAWPGLPGNIDAAFTY-KNGKTYFFKGSKYWRYNGQKMDGD 402

Query: 62  YPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEG 121
           YPKDISEGFTGIPDN+DAALVWSGNGKIYF+KGSKFW+FDP+ +PPVK+TYPKP SNW+G
Sbjct: 403 YPKDISEGFTGIPDNLDAALVWSGNGKIYFYKGSKFWRFDPAQRPPVKATYPKPLSNWDG 462

Query: 122 IPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNC 157
           IPDNIDAAL YTNGYTYFFKG  YWRFND+ FSV+ 
Sbjct: 463 IPDNIDAALQYTNGYTYFFKGGSYWRFNDRLFSVDT 498

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|172356221|ref|NP_001116500.1| matrix metalloproteinase 1 isoform 2 [Bombyx mori] gi|169730454|gb|ACA64805.1| matrix metalloproteinase variant 2 [Bombyx mori] Back     alignment and taxonomy information
>gi|350284804|gb|AEQ27775.1| MMP variant 1 [Manduca sexta] Back     alignment and taxonomy information
>gi|357619633|gb|EHJ72124.1| matrix metalloproteinase 1 isoform 1 [Danaus plexippus] Back     alignment and taxonomy information
>gi|328724693|ref|XP_003248223.1| PREDICTED: matrix metalloproteinase-16-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328724691|ref|XP_001949484.2| PREDICTED: matrix metalloproteinase-16-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328724695|ref|XP_003248224.1| PREDICTED: matrix metalloproteinase-16-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195027856|ref|XP_001986798.1| GH21566 [Drosophila grimshawi] gi|193902798|gb|EDW01665.1| GH21566 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195489771|ref|XP_002092878.1| GE11424 [Drosophila yakuba] gi|194178979|gb|EDW92590.1| GE11424 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|206597316|gb|ACI15752.1| FI01410p [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query161
FB|FBgn0035049 584 Mmp1 "Matrix metalloproteinase 0.950 0.261 0.733 5.8e-66
ZFIN|ZDB-GENE-030901-2 621 mmp14b "matrix metalloproteina 0.956 0.247 0.412 5.8e-33
UNIPROTKB|F1RXD8606 MMP16 "Uncharacterized protein 0.956 0.254 0.406 2.4e-32
UNIPROTKB|F1M7F5564 F1M7F5 "Uncharacterized protei 0.956 0.273 0.406 2.6e-32
UNIPROTKB|F1PLV8607 MMP16 "Uncharacterized protein 0.956 0.253 0.406 3.1e-32
UNIPROTKB|P51512607 MMP16 "Matrix metalloproteinas 0.956 0.253 0.406 3.1e-32
UNIPROTKB|F1NER8 454 VTN "Uncharacterized protein" 0.645 0.229 0.495 3.3e-32
MGI|MGI:1276107607 Mmp16 "matrix metallopeptidase 0.956 0.253 0.406 4e-32
RGD|620199607 Mmp16 "matrix metallopeptidase 0.956 0.253 0.406 4e-32
UNIPROTKB|O35548607 Mmp16 "Matrix metalloproteinas 0.956 0.253 0.406 4e-32
FB|FBgn0035049 Mmp1 "Matrix metalloproteinase 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 113/154 (73%), Positives = 136/154 (88%)

Query:     3 YWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGY 62
             Y+KLT D + EGYP+LISK W GLPG IDAAFTY KNGKTYFFKG++YWRY G+ MD  Y
Sbjct:   324 YYKLTTDSVEEGYPQLISKGWPGLPGNIDAAFTY-KNGKTYFFKGTQYWRYQGRQMDGVY 382

Query:    63 PKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGI 122
             PK+ISEGFTGIPD++DAA+VW GNGKIYFFKGSKFW+FDP+ +PPVK++YPKP SNWEG+
Sbjct:   383 PKEISEGFTGIPDHLDAAMVWGGNGKIYFFKGSKFWRFDPAKRPPVKASYPKPISNWEGV 442

Query:   123 PDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVN 156
             P+N+DAAL YTNGYTYFFKG +Y+RF+D  F+V+
Sbjct:   443 PNNLDAALKYTNGYTYFFKGDKYYRFHDARFAVD 476
GO:0004222 "metalloendopeptidase activity" evidence=ISS;NAS
GO:0007424 "open tracheal system development" evidence=IMP
GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP
GO:0002168 "instar larval development" evidence=IMP
GO:0048102 "autophagic cell death" evidence=IEP
GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP
GO:0005509 "calcium ion binding" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
GO:0031012 "extracellular matrix" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0030425 "dendrite" evidence=IMP
GO:0007561 "imaginal disc eversion" evidence=IMP
GO:0034769 "basement membrane disassembly" evidence=IMP
GO:0007155 "cell adhesion" evidence=IGI
GO:0042246 "tissue regeneration" evidence=IEP;IMP
GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP
GO:0007591 "molting cycle, chitin-based cuticle" evidence=IMP
GO:0030198 "extracellular matrix organization" evidence=IMP
GO:0042060 "wound healing" evidence=IMP
GO:0071711 "basement membrane organization" evidence=IMP
ZFIN|ZDB-GENE-030901-2 mmp14b "matrix metalloproteinase 14b (membrane-inserted)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RXD8 MMP16 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1M7F5 F1M7F5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLV8 MMP16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P51512 MMP16 "Matrix metalloproteinase-16" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NER8 VTN "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1276107 Mmp16 "matrix metallopeptidase 16" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620199 Mmp16 "matrix metallopeptidase 16" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O35548 Mmp16 "Matrix metalloproteinase-16" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
cd00094194 cd00094, HX, Hemopexin-like repeats 3e-54
cd00094194 cd00094, HX, Hemopexin-like repeats 4e-31
cd00094194 cd00094, HX, Hemopexin-like repeats 5e-29
cd00094 194 cd00094, HX, Hemopexin-like repeats 2e-14
smart0012045 smart00120, HX, Hemopexin-like repeats 1e-13
pfam0004545 pfam00045, Hemopexin, Hemopexin 2e-13
pfam0004545 pfam00045, Hemopexin, Hemopexin 2e-08
smart0012045 smart00120, HX, Hemopexin-like repeats 4e-08
smart0012045 smart00120, HX, Hemopexin-like repeats 2e-06
pfam0004545 pfam00045, Hemopexin, Hemopexin 3e-06
>gnl|CDD|238046 cd00094, HX, Hemopexin-like repeats Back     alignment and domain information 
 Score =  169 bits (430), Expect = 3e-54
 Identities = 73/152 (48%), Positives = 95/152 (62%), Gaps = 2/152 (1%)

Query: 2   HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
           ++W+L   G   G P LIS  W  LP  +DAAF     GK YFFKG KYW YTGK+++ G
Sbjct: 26  YFWRL-SPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGDKYWVYTGKNLEPG 84

Query: 62  YPKDISE-GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWE 120
           YPK IS+ GF      IDAAL W  NGK YFFKG K+W++D  ++           +++ 
Sbjct: 85  YPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDKYWRYDEKTQKMDPGYPKLIETDFP 144

Query: 121 GIPDNIDAALHYTNGYTYFFKGSQYWRFNDKS 152
           G+PD +DAA  + +GY YFFKG QYWRF+ +S
Sbjct: 145 GVPDKVDAAFRWLDGYYYFFKGDQYWRFDPRS 176

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. Length = 194
>gnl|CDD|238046 cd00094, HX, Hemopexin-like repeats Back     alignment and domain information
>gnl|CDD|238046 cd00094, HX, Hemopexin-like repeats Back     alignment and domain information
>gnl|CDD|238046 cd00094, HX, Hemopexin-like repeats Back     alignment and domain information
>gnl|CDD|214524 smart00120, HX, Hemopexin-like repeats Back     alignment and domain information
>gnl|CDD|215676 pfam00045, Hemopexin, Hemopexin Back     alignment and domain information
>gnl|CDD|215676 pfam00045, Hemopexin, Hemopexin Back     alignment and domain information
>gnl|CDD|214524 smart00120, HX, Hemopexin-like repeats Back     alignment and domain information
>gnl|CDD|214524 smart00120, HX, Hemopexin-like repeats Back     alignment and domain information
>gnl|CDD|215676 pfam00045, Hemopexin, Hemopexin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 161
cd00094194 HX Hemopexin-like repeats.; Hemopexin is a heme-bi 100.0
cd00094194 HX Hemopexin-like repeats.; Hemopexin is a heme-bi 100.0
KOG1565|consensus469 99.98
KOG1565|consensus469 99.88
PF0004545 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexi 99.51
PF0004545 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexi 99.51
smart0012045 HX Hemopexin-like repeats. Hemopexin is a heme-bin 99.38
smart0012045 HX Hemopexin-like repeats. Hemopexin is a heme-bin 99.38
PRK14131 376 N-acetylneuraminic acid mutarotase; Provisional 96.01
TIGR03547 346 muta_rot_YjhT mutatrotase, YjhT family. Members of 95.64
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 95.13
PLN02193 470 nitrile-specifier protein 93.77
TIGR03548 323 mutarot_permut cyclically-permuted mutatrotase fam 93.2
PLN02153 341 epithiospecifier protein 92.95
PHA03098534 kelch-like protein; Provisional 92.59
PHA03098 534 kelch-like protein; Provisional 91.82
PHA02713557 hypothetical protein; Provisional 91.1
PLN02193 470 nitrile-specifier protein 90.58
PHA02713 557 hypothetical protein; Provisional 89.09
TIGR03547 346 muta_rot_YjhT mutatrotase, YjhT family. Members of 87.52
PLN02153341 epithiospecifier protein 87.31
PRK14131 376 N-acetylneuraminic acid mutarotase; Provisional 86.36
PHA02790480 Kelch-like protein; Provisional 81.3
>cd00094 HX Hemopexin-like repeats Back     alignment and domain information 
Probab=100.00  E-value=2.7e-45  Score=274.18  Aligned_cols=156  Identities=48%  Similarity=0.993  Sum_probs=142.2

Q ss_pred             CEEEEEeCCccCcCCCeeccccCCCCCCCCcEEEEEccCCeEEEEECCEEEEEcCCccCCCCceecCCCCCCCC--CCcc
Q psy5152           1 LHYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIP--DNID   78 (161)
Q Consensus         1 ~~~W~~~~~~~~~g~P~~i~~~w~glp~~iDAa~~~~~~g~~y~Fkg~~~w~~~~~~~~~g~P~~i~~~~~glp--~~id   78 (161)
                      .+||+++.. ...++|++|++.||++|++||||++++.++++|||||++||+|+...++.+||+.|++ |...+  .+||
T Consensus        25 ~~~w~~~~~-~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~~yw~~~~~~~~~~~Pk~i~~-~~~~~~~~~iD  102 (194)
T cd00094          25 RYFWRLSPG-KPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGDKYWVYTGKNLEPGYPKPISD-LGFPPTVKQID  102 (194)
T ss_pred             CEEEEEeCC-CCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCCEEEEEcCcccccCCCcchhh-cCCCCCCCCcc
Confidence            379999877 7788999999999999999999999965699999999999999998889999999998 54443  9999


Q ss_pred             ceEEEccCCeEEEEECCeEEEEcCCCCCCcCCCCCccCCC-CCCCCCCCCeEEEeCCCeEEEEECCeEEEEeCCCceeec
Q psy5152          79 AALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNC  157 (161)
Q Consensus        79 Aa~~~~~~~~~yfFkg~~y~~~d~~~~~~~~~gyP~~i~~-w~g~p~~idaa~~~~~g~~yff~g~~y~r~~~~~~~v~~  157 (161)
                      |||.++.++++|||+|++||+||..+++ ++++||+.|++ |+|||.+|||||++.+|++|||+|++|||||..+++|+.
T Consensus       103 AA~~~~~~~~~yfFkg~~y~ry~~~~~~-v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~g~~y~~~d~~~~~~~~  181 (194)
T cd00094         103 AALRWPDNGKTYFFKGDKYWRYDEKTQK-MDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFKGDQYWRFDPRSKEVRV  181 (194)
T ss_pred             EEEEEcCCCEEEEEeCCEEEEEeCCCcc-ccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEEECCEEEEEeCccceecC
Confidence            9999976899999999999999998777 88999999998 999999999999997799999999999999999988776


Q ss_pred             CC
Q psy5152         158 RP  159 (161)
Q Consensus       158 ~~  159 (161)
                      |+
T Consensus       182 ~~  183 (194)
T cd00094         182 GY  183 (194)
T ss_pred             Cc
Confidence            54

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
>cd00094 HX Hemopexin-like repeats Back     alignment and domain information
>KOG1565|consensus Back     alignment and domain information
>KOG1565|consensus Back     alignment and domain information
>PF00045 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexin (3 Back     alignment and domain information
>PF00045 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexin (3 Back     alignment and domain information
>smart00120 HX Hemopexin-like repeats Back     alignment and domain information
>smart00120 HX Hemopexin-like repeats Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
3c7x_A196 Hemopexin-Like Domain Of Matrix Metalloproteinase 1 1e-29
1gen_A218 C-Terminal Domain Of Gelatinase A Length = 218 5e-21
1rtg_A210 C-terminal Domain (haemopexin-like Domain) Of Human 6e-21
1ck7_A631 Gelatinase A (Full-Length) Length = 631 7e-21
1su3_A450 X-Ray Structure Of Human Prommp-1: New Insights Int 3e-18
2clt_A367 Crystal Structure Of The Active Form (Full-Length) 5e-18
1fbl_A370 Structure Of Full-Length Porcine Synovial Collagena 1e-16
1pex_A207 Collagenase-3 (Mmp-13) C-Terminal Hemopexin-Like Do 2e-14
2jxy_A194 Solution Structure Of The Hemopexin-Like Domain Of 2e-14
3ba0_A365 Crystal Structure Of Full-Length Human Mmp-12 Lengt 3e-14
1qhu_A 460 Mammalian Blood Serum Haemopexin Deglycosylated And 7e-13
1itv_A195 Dimeric Form Of The Haemopexin Domain Of Mmp9 Lengt 1e-10
1hxn_A219 1.8 Angstroms Crystal Structure Of The C-Terminal D 5e-06
1hxn_A219 1.8 Angstroms Crystal Structure Of The C-Terminal D 6e-04
3oyo_A225 Crystal Structure Of Hemopexin Fold Protein Cp4 Fro 3e-04
3lp9_A227 Crystal Structure Of Ls24, A Seed Albumin From Lath 3e-04
>pdb|3C7X|A Chain A, Hemopexin-Like Domain Of Matrix Metalloproteinase 14 Length = 196 Back     alignment and structure 
Iteration: 1

 Score =  125 bits (313), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 100/156 (64%), Gaps = 4/156 (2%)
Query: 3   YWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGY 62
           +W++ ++ + +GYP  I + W GLP  I+ A+   K+GK  FFKG K+W +   S++ GY
Sbjct: 26  FWRVRNNQVMDGYPMPIGQFWRGLPASINTAYE-RKDGKFVFFKGDKHWVFDEASLEPGY 84
Query: 63  PKDISEGFTGIP-DNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEG 121
           PK I E   G+P D IDAAL W  NGK YFF+G+K+++F+   +  V S YPK    WEG
Sbjct: 85  PKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELR-AVDSEYPKNIKVWEG 143
Query: 122 IPDNIDAALHYTNG-YTYFFKGSQYWRFNDKSFSVN 156
           IP++   +   ++  +TYF+KG++YW+FN++   V 
Sbjct: 144 IPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKLKVE 179
>pdb|1GEN|A Chain A, C-Terminal Domain Of Gelatinase A Length = 218 Back     alignment and structure
>pdb|1RTG|A Chain A, C-terminal Domain (haemopexin-like Domain) Of Human Matrix Metalloproteinase-2 Length = 210 Back     alignment and structure
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length) Length = 631 Back     alignment and structure
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into Collagenase Action Length = 450 Back     alignment and structure
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of Human Fibroblast Collagenase. Length = 367 Back     alignment and structure
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase (Mmp1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller Length = 370 Back     alignment and structure
>pdb|1PEX|A Chain A, Collagenase-3 (Mmp-13) C-Terminal Hemopexin-Like Domain Length = 207 Back     alignment and structure
>pdb|2JXY|A Chain A, Solution Structure Of The Hemopexin-Like Domain Of Mmp12 Length = 194 Back     alignment and structure
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12 Length = 365 Back     alignment and structure
>pdb|1QHU|A Chain A, Mammalian Blood Serum Haemopexin Deglycosylated And In Complex With Its Ligand Haem Length = 460 Back     alignment and structure
>pdb|1ITV|A Chain A, Dimeric Form Of The Haemopexin Domain Of Mmp9 Length = 195 Back     alignment and structure
>pdb|1HXN|A Chain A, 1.8 Angstroms Crystal Structure Of The C-Terminal Domain Of Rabbit Serum Hemopexin Length = 219 Back     alignment and structure
>pdb|1HXN|A Chain A, 1.8 Angstroms Crystal Structure Of The C-Terminal Domain Of Rabbit Serum Hemopexin Length = 219 Back     alignment and structure
>pdb|3OYO|A Chain A, Crystal Structure Of Hemopexin Fold Protein Cp4 From Cow Pea Length = 225 Back     alignment and structure
>pdb|3LP9|A Chain A, Crystal Structure Of Ls24, A Seed Albumin From Lathyrus Sativus Length = 227 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
1gen_A218 Gelatinase A; hydrolase, hemopexin domain, metallo 1e-50
1gen_A218 Gelatinase A; hydrolase, hemopexin domain, metallo 4e-34
1gen_A218 Gelatinase A; hydrolase, hemopexin domain, metallo 2e-28
1gen_A218 Gelatinase A; hydrolase, hemopexin domain, metallo 4e-15
1ck7_A631 Protein (gelatinase A); hydrolase (metalloprotease 1e-50
1ck7_A631 Protein (gelatinase A); hydrolase (metalloprotease 4e-33
1ck7_A631 Protein (gelatinase A); hydrolase (metalloprotease 1e-25
1ck7_A631 Protein (gelatinase A); hydrolase (metalloprotease 1e-15
3c7x_A196 Matrix metalloproteinase-14; membrane protein inte 2e-50
3c7x_A196 Matrix metalloproteinase-14; membrane protein inte 4e-31
3c7x_A196 Matrix metalloproteinase-14; membrane protein inte 1e-26
1su3_A450 Interstitial collagenase; prodomain, hemopexin dom 1e-48
1su3_A450 Interstitial collagenase; prodomain, hemopexin dom 2e-22
1pex_A207 Collagenase-3, MMP-13; C-terminal hemopexin-like d 2e-47
1pex_A207 Collagenase-3, MMP-13; C-terminal hemopexin-like d 2e-25
1itv_A195 MMP9; adaptive molecular recognition, beta propell 3e-44
1itv_A195 MMP9; adaptive molecular recognition, beta propell 9e-27
1itv_A195 MMP9; adaptive molecular recognition, beta propell 1e-14
3ba0_A365 Macrophage metalloelastase; FULL-length MMP-12, he 1e-43
3ba0_A365 Macrophage metalloelastase; FULL-length MMP-12, he 2e-18
1hxn_A219 Hemopexin, HPX; heme, binding protein; 1.80A {Oryc 2e-43
1hxn_A219 Hemopexin, HPX; heme, binding protein; 1.80A {Oryc 4e-31
1hxn_A219 Hemopexin, HPX; heme, binding protein; 1.80A {Oryc 1e-25
1hxn_A 219 Hemopexin, HPX; heme, binding protein; 1.80A {Oryc 1e-13
3oyo_A225 Hemopexin fold protein CP4; seeds, plant protein; 2e-41
3oyo_A225 Hemopexin fold protein CP4; seeds, plant protein; 7e-33
3oyo_A225 Hemopexin fold protein CP4; seeds, plant protein; 4e-31
3oyo_A 225 Hemopexin fold protein CP4; seeds, plant protein; 2e-16
1qhu_A460 Protein (hemopexin); beta propeller, HAEM binding 3e-41
1qhu_A 460 Protein (hemopexin); beta propeller, HAEM binding 6e-39
1qhu_A460 Protein (hemopexin); beta propeller, HAEM binding 4e-24
1qhu_A 460 Protein (hemopexin); beta propeller, HAEM binding 2e-23
1qhu_A 460 Protein (hemopexin); beta propeller, HAEM binding 4e-20
1qhu_A 460 Protein (hemopexin); beta propeller, HAEM binding 2e-12
3lp9_A227 LS-24; SEED albumin, plant protein; HET: SPM; 2.20 9e-37
3lp9_A227 LS-24; SEED albumin, plant protein; HET: SPM; 2.20 4e-28
3lp9_A227 LS-24; SEED albumin, plant protein; HET: SPM; 2.20 1e-26
3lp9_A227 LS-24; SEED albumin, plant protein; HET: SPM; 2.20 2e-12
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A Length = 218 Back     alignment and structure
 Score =  160 bits (406), Expect = 1e-50
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 4/157 (2%)

Query: 2   HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
             W+          P L++  W  LP +IDA +   +  K  FF G++YW Y+  +++ G
Sbjct: 50  FIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERG 109

Query: 62  YPKDISE-GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-W 119
           YPK ++  G       +DAA  WS N K Y F G KFW+++   K  +   +PK  ++ W
Sbjct: 110 YPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKK-KMDPGFPKLIADAW 168

Query: 120 EGIPDNIDAALHY-TNGYTYFFKGSQYWRFNDKSFSV 155
             IPDN+DA +     G++YFFKG+ Y +  ++S   
Sbjct: 169 NAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKS 205
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A Length = 218 Back     alignment and structure
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A Length = 218 Back     alignment and structure
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A Length = 218 Back     alignment and structure
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Length = 631 Back     alignment and structure
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Length = 631 Back     alignment and structure
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Length = 631 Back     alignment and structure
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Length = 631 Back     alignment and structure
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} Length = 196 Back     alignment and structure
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} Length = 196 Back     alignment and structure
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} Length = 196 Back     alignment and structure
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* Length = 450 Back     alignment and structure
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* Length = 450 Back     alignment and structure
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 Length = 207 Back     alignment and structure
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 Length = 207 Back     alignment and structure
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 Length = 195 Back     alignment and structure
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 Length = 195 Back     alignment and structure
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 Length = 195 Back     alignment and structure
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A Length = 365 Back     alignment and structure
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A Length = 365 Back     alignment and structure
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 Length = 219 Back     alignment and structure
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 Length = 219 Back     alignment and structure
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 Length = 219 Back     alignment and structure
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 Length = 219 Back     alignment and structure
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} Length = 225 Back     alignment and structure
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} Length = 225 Back     alignment and structure
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} Length = 225 Back     alignment and structure
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} Length = 225 Back     alignment and structure
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Length = 460 Back     alignment and structure
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Length = 460 Back     alignment and structure
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Length = 460 Back     alignment and structure
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Length = 460 Back     alignment and structure
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Length = 460 Back     alignment and structure
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Length = 460 Back     alignment and structure
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 3s18_A Length = 227 Back     alignment and structure
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 3s18_A Length = 227 Back     alignment and structure
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 3s18_A Length = 227 Back     alignment and structure
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 3s18_A Length = 227 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query161
3c7x_A196 Matrix metalloproteinase-14; membrane protein inte 100.0
1gen_A218 Gelatinase A; hydrolase, hemopexin domain, metallo 100.0
1pex_A207 Collagenase-3, MMP-13; C-terminal hemopexin-like d 100.0
1itv_A195 MMP9; adaptive molecular recognition, beta propell 100.0
3ba0_A365 Macrophage metalloelastase; FULL-length MMP-12, he 100.0
3oyo_A225 Hemopexin fold protein CP4; seeds, plant protein; 100.0
3lp9_A227 LS-24; SEED albumin, plant protein; HET: SPM; 2.20 100.0
1su3_A450 Interstitial collagenase; prodomain, hemopexin dom 100.0
1ck7_A631 Protein (gelatinase A); hydrolase (metalloprotease 100.0
1hxn_A219 Hemopexin, HPX; heme, binding protein; 1.80A {Oryc 100.0
3c7x_A196 Matrix metalloproteinase-14; membrane protein inte 100.0
1qhu_A 460 Protein (hemopexin); beta propeller, HAEM binding 100.0
1qhu_A 460 Protein (hemopexin); beta propeller, HAEM binding 100.0
1gen_A218 Gelatinase A; hydrolase, hemopexin domain, metallo 100.0
1hxn_A219 Hemopexin, HPX; heme, binding protein; 1.80A {Oryc 100.0
1itv_A195 MMP9; adaptive molecular recognition, beta propell 100.0
1pex_A207 Collagenase-3, MMP-13; C-terminal hemopexin-like d 100.0
3lp9_A227 LS-24; SEED albumin, plant protein; HET: SPM; 2.20 100.0
3oyo_A225 Hemopexin fold protein CP4; seeds, plant protein; 100.0
3ba0_A365 Macrophage metalloelastase; FULL-length MMP-12, he 99.97
1ck7_A631 Protein (gelatinase A); hydrolase (metalloprotease 99.97
1su3_A450 Interstitial collagenase; prodomain, hemopexin dom 99.97
2uvk_A 357 YJHT; unknown function, hypothetical protein, sial 96.06
2vpj_A 301 Kelch-like protein 12; adaptor protein, WNT signal 93.95
1zgk_A 308 Kelch-like ECH-associated protein 1; beta-propelle 93.71
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 93.66
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 93.45
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 93.37
3ii7_A 306 Kelch-like protein 7; protein-binding, kelch-repea 93.19
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 92.61
2xn4_A 302 Kelch-like protein 2; structural protein, cytoskel 92.43
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 92.22
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 92.17
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 92.11
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 91.8
4a2l_A 795 BT_4663, two-component system sensor histidine kin 88.47
1tl2_A236 L10, protein (tachylectin-2); animal lectin, horse 86.51
2uvk_A 357 YJHT; unknown function, hypothetical protein, sial 85.35
3v9f_A 781 Two-component system sensor histidine kinase/RESP 84.24
3v9f_A 781 Two-component system sensor histidine kinase/RESP 83.92
1tl2_A 236 L10, protein (tachylectin-2); animal lectin, horse 80.41
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.1e-51  Score=306.41  Aligned_cols=156  Identities=42%  Similarity=0.935  Sum_probs=148.2

Q ss_pred             EEEEEeCCccCcCCCeeccccCCCCCCCCcEEEEEccCCeEEEEECCEEEEEcCCccCCCCceecCCCCCCCC-CCccce
Q psy5152           2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIP-DNIDAA   80 (161)
Q Consensus         2 ~~W~~~~~~~~~g~P~~i~~~w~glp~~iDAa~~~~~~g~~y~Fkg~~~w~~~~~~~~~g~P~~i~~~~~glp-~~idAa   80 (161)
                      +||++++.++.+|||++|+++|||||++||||+++ .++++|||||++||+|++.+++.|||+.|++.|+||| ++||||
T Consensus        25 ~~w~~~~~~~~~gyP~~I~~~w~glP~~iDAa~~~-~~g~~yfFkg~~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA  103 (196)
T 3c7x_A           25 WFWRVRNNQVMDGYPMPIGQFWRGLPASINTAYER-KDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAA  103 (196)
T ss_dssp             EEEEEETTEECTTCSEEHHHHSTTCCSSCCEEEEC-TTSCEEEEETTEEEEEETTEECTTCSEEGGGTCBSCCSSCCSEE
T ss_pred             EEEEEECCccCCCCceEhhHhccCCCCCccEEEEe-CCCcEEEecCCEEEEEeCCcccCCCCeEhhhcCCCCCCCcccEE
Confidence            79999988899999999999999999999999987 7899999999999999998899999999999999999 899999


Q ss_pred             EEEccCCeEEEEECCeEEEEcCCCCCCcCCCCCccCCCCCCCCCCCCeEEEeCCC-eEEEEECCeEEEEeCCCceeecCC
Q psy5152          81 LVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNG-YTYFFKGSQYWRFNDKSFSVNCRP  159 (161)
Q Consensus        81 ~~~~~~~~~yfFkg~~y~~~d~~~~~~~~~gyP~~i~~w~g~p~~idaa~~~~~g-~~yff~g~~y~r~~~~~~~v~~~~  159 (161)
                      |.|..++++|||+|++||+||+.+++ |+++|||+|++|+|||.+|||||.+.+| ++|||+|++|||||..+++|+.|+
T Consensus       104 ~~~~~~g~~yfFkG~~yw~yd~~~~~-v~~gyPk~i~~~~gip~~idaAf~~~~~~~~YfFkg~~y~r~d~~~~~v~~~y  182 (196)
T 3c7x_A          104 LFWMPNGKTYFFRGNKYYRFNEELRA-VDSEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKLKVEPGY  182 (196)
T ss_dssp             EEETTTTEEEEEETTEEEEEETTTTE-ECTTCSEEGGGSBTCCSSCSEEEECTTSSEEEEEETTEEEEEETTTTEECTTC
T ss_pred             EEEccCCEEEEEECCEEEEEeCCccc-ccCCCCccHHHCCCcCCCcceeEEecCCCEEEEEECCEEEEEECCcceeccCC
Confidence            99977899999999999999998877 8999999998899999999999999766 999999999999999999999875
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A Back     alignment and structure
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 Back     alignment and structure
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 Back     alignment and structure
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A Back     alignment and structure
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} Back     alignment and structure
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A Back     alignment and structure
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* Back     alignment and structure
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Back     alignment and structure
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 Back     alignment and structure
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Back     alignment and structure
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Back     alignment and structure
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A Back     alignment and structure
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 Back     alignment and structure
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 Back     alignment and structure
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 Back     alignment and structure
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A Back     alignment and structure
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} Back     alignment and structure
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A Back     alignment and structure
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Back     alignment and structure
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 161
d1pexa_192 b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal d 1e-43
d1pexa_192 b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal d 5e-22
d1gena_200 b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal dom 3e-41
d1gena_200 b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal dom 1e-28
d1gena_200 b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal dom 3e-21
d1gena_200 b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal dom 6e-14
d1su3a2195 b.66.1.1 (A:271-465) Collagenase (MMP1), C-termina 3e-41
d1su3a2195 b.66.1.1 (A:271-465) Collagenase (MMP1), C-termina 5e-20
d1su3a2 195 b.66.1.1 (A:271-465) Collagenase (MMP1), C-termina 5e-09
d1qhua1192 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus 9e-40
d1qhua1192 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus 5e-23
d1qhua1192 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus 4e-09
d1itva_195 b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sa 1e-38
d1itva_195 b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sa 7e-23
d1hxna_210 b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cunic 6e-38
d1hxna_210 b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cunic 3e-27
d1hxna_210 b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cunic 1e-23
>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (355), Expect = 1e-43
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 3/155 (1%)

Query: 2   HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
            +W+L    + +    L    W  LP +IDAA+ +  +   + F+G K+W   G  + +G
Sbjct: 28  FFWRLHPQQV-DAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEG 86

Query: 62  YPKDISE-GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWE 120
           YPK ISE G       I AA+ +   GK   F G++ W++D ++    K        ++ 
Sbjct: 87  YPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFP 146

Query: 121 GIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSV 155
           GI D +DA     NGY YFF G   + ++  S  +
Sbjct: 147 GIGDKVDAVYEK-NGYIYFFNGPIQFEYSIWSNRI 180
>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 200 Back     information, alignment and structure
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 200 Back     information, alignment and structure
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 200 Back     information, alignment and structure
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 200 Back     information, alignment and structure
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 195 Back     information, alignment and structure
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 195 Back     information, alignment and structure
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 195 Back     information, alignment and structure
>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 192 Back     information, alignment and structure
>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 192 Back     information, alignment and structure
>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 192 Back     information, alignment and structure
>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Length = 195 Back     information, alignment and structure
>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Length = 195 Back     information, alignment and structure
>d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 210 Back     information, alignment and structure
>d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 210 Back     information, alignment and structure
>d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query161
d1gena_200 Gelatinase A (MMP-2), C-terminal domain {Human (Ho 100.0
d1pexa_192 Collagenase-3 (MMP-13), C-terminal domain {Human ( 100.0
d1su3a2195 Collagenase (MMP1), C-terminal domain {Human (Homo 100.0
d1itva_195 Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 100.0
d1qhua1192 Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1hxna_210 Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1gena_200 Gelatinase A (MMP-2), C-terminal domain {Human (Ho 100.0
d1qhua1192 Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.98
d1pexa_192 Collagenase-3 (MMP-13), C-terminal domain {Human ( 99.98
d1hxna_210 Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.98
d1su3a2195 Collagenase (MMP1), C-terminal domain {Human (Homo 99.97
d1itva_195 Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 99.97
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-47  Score=281.34  Aligned_cols=156  Identities=33%  Similarity=0.723  Sum_probs=143.3

Q ss_pred             CEEEEEeCCccCcCCCeeccccCCCCCCCCcEEEEEccCCeEEEEECCEEEEEcCCccCCCCceecCCC-CCCCCCCccc
Q psy5152           1 LHYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEG-FTGIPDNIDA   79 (161)
Q Consensus         1 ~~~W~~~~~~~~~g~P~~i~~~w~glp~~iDAa~~~~~~g~~y~Fkg~~~w~~~~~~~~~g~P~~i~~~-~~glp~~idA   79 (161)
                      .+|||++..+...++|++|++.|++||++||||++++.++++|||+|+++|+|++.+++.|||+.|++. +++.+.+|||
T Consensus        31 ~~~wr~~~~~~~~~~P~~I~~~w~glp~~IdAA~~~~~~~~~yffkg~~~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDA  110 (200)
T d1gena_          31 RFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDA  110 (200)
T ss_dssp             TEEEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEETTEEEEEETTEECTTCSEEGGGGTCCTTCCCCSE
T ss_pred             CEEEEEcCCCCCCCCcEehhhccCCCCCCceEEEEECCCCeEEEecCceEEEEcCcccccCCCceehhcCCCCCccceee
Confidence            379999888888889999999999999999999998778999999999999999999999999999874 4445589999


Q ss_pred             eEEEccCCeEEEEECCeEEEEcCCCCCCcCCCCCccCCC-CCCCCCCCCeEEEe-CCCeEEEEECCeEEEEeCCCceeec
Q psy5152          80 ALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIPDNIDAALHY-TNGYTYFFKGSQYWRFNDKSFSVNC  157 (161)
Q Consensus        80 a~~~~~~~~~yfFkg~~y~~~d~~~~~~~~~gyP~~i~~-w~g~p~~idaa~~~-~~g~~yff~g~~y~r~~~~~~~v~~  157 (161)
                      ||.|..++++|||+|++||+||+.++. ++++|||.|++ |+|||.+|||||++ .+|++|||+|++|||||..+.+++.
T Consensus       111 A~~~~~~g~~YfFkg~~y~ryd~~~~~-vd~~yPk~I~~~w~gvp~~idAAf~~~~~g~~Yff~g~~y~r~d~~~~~~~~  189 (200)
T d1gena_         111 AFNWSKNKKTYIFAGDKFWRYNEVKKK-MDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVK  189 (200)
T ss_dssp             EEEETTTTEEEEEETTEEEEEETTTTE-ECSSCCEEHHHHSSSCCSSCSEEEECTTTCEEEEEETTEEEEEETTEEEEEE
T ss_pred             EEEECCCCeEEEEeCcEEEEeccccce-eccCcceehhhccCCCCCCccEEEEecCCCEEEEEECCEEEEEECCceEEcc
Confidence            999988899999999999999999877 89999999998 99999999999998 5899999999999999998887653
>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure