Psyllid ID: psy5177

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MMGTACLTAYTDYWNPDSLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSSWPLMAMWPKISESSRRKFLYRVSRERLYNA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEccccccccccccccccEEEEEEEccccccccccEEEEcccccccccccccccccEEEEccccccccHHHHHHHHHccccccccccccEEEEEccccccccHHHHHHHHHcccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHccHccccHHHHHcccEEEEcccccccccccccccccEEEEEEEEcccccccccEEEEcccHHHHHHHcccccccEEEEccccccccHHHHHHHHHcccccccccccEEEEEEccccccccHHHHHHHHHccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccHHHHHHHHccc
Coil and Loop (DISEMBL)
MMGTACLTAytdywnpdslvpppkvvAKKRTKKLGQAASAERGELVTMIGIIrasgeaippvfvfprvfmkdefllgapegslgfanksgwssTEIFFETIKHIQNQIKaskenpalilmdnhethQSMEAIEYCRASgitlltfpphktdelqpldvavfsPFKNRLKAGFkkwtsdnpgsswplmamwpkisessrRKFLYRVSRERLYNA
Flexible Loop (DISEMBL)
MMGTACLTaytdywnpdslvpppkvvAKKRTKKlgqaasaergeLVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGfkkwtsdnpgsswplmamwpkisessrrkflyrvsrerlyna
Low Complexity Region (SEG)
MMGTACLTAYTDYWNPDSLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSSWPLMAMWPKISESSRRKFLYRVSRERLYNA
Disordered region (IsUnstruct)
****ACLTAYTDYWNPDSLV**********************GELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSSWPLMAMWPKI*******FLY**********
Disordered Region (DISOPRED)
**GTACLTAYTDYWNPDSLVPPPKVVAK*****************VTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSSWPLMAMWPKISESSRRKFLYRVSRE*LY**
Disordered Region (DISEMBL)
MMGTACLTAYTDYWNPDSLVPPPKVV**************ERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSSWPLMAMWPKISESSRRKFLYRVSRERLYNA
Disordered Region (DISPRO)
*MGTACLTAYTDYWNPDSLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSSWPLMAMWPKISESSRRKFLYRVSRERLYN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMGTACLTAYTDYWNPDSLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSSWPLMAMWPKISESSRRKFLYRVSRERLYNA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
Q7Z3K3	1410	Pogo transposable element	yes	N/A	0.553	0.083	0.306	0.0002
Q8BZH4	1409	Pogo transposable element	yes	N/A	0.553	0.083	0.298	0.0005

>sp|Q7Z3K3|POGZ_HUMAN Pogo transposable element with ZNF domain OS=Homo sapiens GN=POGZ PE=1 SV=2

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 52   IRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKAS 111
            I A G  +P   VF R  M        P+  L  A +SG+S  EI       +  +  A 
Sbjct: 1163 ILADGTVLP-TLVFYRGQMDQP--ANMPDSILLEAKESGYSDDEIMELWSTRVWQKHTAC 1219

Query: 112  KENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG 171
            + +  +++MD H TH S E +    AS       P   + ++QPLDV +    KN L   
Sbjct: 1220 QRSKGMLVMDCHRTHLSEEVLAMLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFL--- 1276

Query: 172  FKKW 175
             KKW
Sbjct: 1277 HKKW 1280

Plays a role in mitotic cell cycle progression and is involved in kinetochore assembly and mitotic sister chromatid cohesion. Probably through its association with CBX5 plays a role in mitotic chromosome segregation by regulating aurora kinase B/AURKB activation and AURKB and CBX5 dissociation from chromosome arms.
Homo sapiens (taxid: 9606)

>sp|Q8BZH4|POGZ_MOUSE Pogo transposable element with ZNF domain OS=Mus musculus GN=Pogz PE=1 SV=2

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 52   IRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKAS 111
            I A G  +P   VF R   +       P+  L  A  SG+S  EI       +  +  A 
Sbjct: 1159 ILADGTVLP-TLVFFR--GQANRFANVPDSILLEAKDSGYSDDEIMELWSTRVWKKHTAC 1215

Query: 112  KENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG 171
            + + ++++MD H TH S E +    AS       P   + ++QPLDV +    KN L   
Sbjct: 1216 QHSKSMLVMDCHRTHLSEEVLALLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFL--- 1272

Query: 172  FKKW 175
             KKW
Sbjct: 1273 HKKW 1276

Plays a role in mitotic cell cycle progression and is involved in kinetochore assembly and mitotic sister chromatid cohesion. Probably through its association with CBX5 plays a role in mitotic chromosome segregation by regulating aurora kinase B/AURKB activation and AURKB and CBX5 dissociation from chromosome arms.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
357618507	764	hypothetical protein KGM_18910 [Danaus p	0.849	0.236	0.486	6e-50
427791397	487	Putative tick transposon, partial [Rhipi	0.746	0.326	0.522	3e-44
449692570	318	PREDICTED: uncharacterized protein LOC10	0.769	0.515	0.493	5e-44
449670659	1644	PREDICTED: uncharacterized protein LOC10	0.769	0.099	0.481	3e-43
449688819	419	PREDICTED: uncharacterized protein LOC10	0.769	0.391	0.481	2e-42
449676617	1115	PREDICTED: uncharacterized protein LOC10	0.769	0.147	0.481	3e-42
449666581	468	PREDICTED: uncharacterized protein LOC10	0.877	0.399	0.456	3e-42
449672758	1952	PREDICTED: kinesin family member 21A [Hy	0.877	0.095	0.451	4e-42
449690888	420	PREDICTED: uncharacterized protein LOC10	0.877	0.445	0.456	4e-42
443733699	298	hypothetical protein CAPTEDRAFT_141083 [	0.751	0.536	0.506	7e-42

>gi|357618507|gb|EHJ71459.1| hypothetical protein KGM_18910 [Danaus plexippus]

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/185 (48%), Positives = 129/185 (69%), Gaps = 4/185 (2%)

Query: 18  SLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLG 77
           +++  PKV+A ++ +++GQ  SAERGELVT  G+I A+G ++PPV+VFPRV  KD FL G
Sbjct: 252 TVLSTPKVIAGRKQRQVGQIVSAERGELVTFCGVITATGSSLPPVYVFPRVHYKDHFLNG 311

Query: 78  APEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRA 137
           AP+GSLG  N+SGW ++E+F   +KHIQ    ++K NP LI+ DNHE+H S+EA+ YCR 
Sbjct: 312 APDGSLGLVNRSGWMTSELFIRVLKHIQRLTSSNKNNPILIICDNHESHISIEAVNYCRD 371

Query: 138 SGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSSWPLMAMWPKISESS 197
           +G+  L+ PPH + +LQPLDV VF PFK +LK  F  W   N G    ++ ++  I+E S
Sbjct: 372 NGMVYLSLPPHTSHKLQPLDVGVFGPFKGKLKIAFNDWHIQNVGK---ILTIY-SIAELS 427

Query: 198 RRKFL 202
           +  +L
Sbjct: 428 KLAYL 432

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791397|gb|JAA61150.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/159 (52%), Positives = 108/159 (67%)

Query: 23  PKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGS 82
           PKVV     K++GQ  SA+RGELVT++  + A G A+PPV +FPRV  KD FL GAP GS
Sbjct: 195 PKVVGACGEKQIGQVTSADRGELVTVLCTVNAIGNALPPVLIFPRVRFKDFFLKGAPAGS 254

Query: 83  LGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITL 142
           LG A++SGW S+E+F   ++HI    K S E P L++ DNHE+H S+  I   + SG+ L
Sbjct: 255 LGLADRSGWMSSELFLLALEHIVRHTKCSTEEPILLIRDNHESHVSINTINKAKESGVIL 314

Query: 143 LTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPG 181
           LTFPPH +  LQPLDV+V+ PFK+R  A    W +DNPG
Sbjct: 315 LTFPPHCSHRLQPLDVSVYGPFKSRYNAACNDWLTDNPG 353

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449692570|ref|XP_004213088.1| PREDICTED: uncharacterized protein LOC101237143, partial [Hydra magnipapillata]

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 111/164 (67%)

Query: 18  SLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLG 77
           ++  PPK+++ + TK++ QA SAERG LVTM+  + A G  +PPVF+FPRV  KD  + G
Sbjct: 49  TVTDPPKIISTRGTKRVSQAVSAERGSLVTMLAFVNAMGNTVPPVFIFPRVNYKDFMICG 108

Query: 78  APEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRA 137
           AP GSLG  NKSGW ++E F   +KH  +  K S E+P L+LMDNHE+H S E I + + 
Sbjct: 109 APTGSLGLCNKSGWMTSENFLVAMKHFVSHAKPSVEHPVLLLMDNHESHISFETITFAKE 168

Query: 138 SGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPG 181
           + + LLTFPPH +  LQPLDV+VF PFK+  +    +W + NPG
Sbjct: 169 NSLILLTFPPHCSHRLQPLDVSVFGPFKSYFRLAQNEWLASNPG 212

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449670659|ref|XP_004207313.1| PREDICTED: uncharacterized protein LOC101240164 [Hydra magnipapillata]

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 111/164 (67%)

Query: 18   SLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLG 77
            ++  PPK+++ + TK++ QA SAERG LVTM+  + A G  +PP+F+FPR+  KD  + G
Sbjct: 1254 TVTDPPKIISTRGTKRVSQAVSAERGSLVTMLAFVNAMGNTVPPLFIFPRINYKDFMICG 1313

Query: 78   APEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRA 137
            AP GSLG  NKSGW ++E F   +KH  +  K S E+P L+LMDNHE+H S E I + + 
Sbjct: 1314 APTGSLGLCNKSGWMTSENFLVAMKHFVSHAKPSVEHPVLLLMDNHESHISFETITFAKE 1373

Query: 138  SGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPG 181
            + + LLTFPPH +  LQPLDV+VF PFK+  +    +W + NPG
Sbjct: 1374 NSLILLTFPPHCSHRLQPLDVSVFGPFKSYFRLAQNEWLASNPG 1417

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449688819|ref|XP_004211858.1| PREDICTED: uncharacterized protein LOC101241720, partial [Hydra magnipapillata]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 110/164 (67%)

Query: 18  SLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLG 77
           ++  PPK+++ + TK++ QA SAERG LVTM+  + A G  +PPVF+FPRV  KD  + G
Sbjct: 180 TVTDPPKIISTRGTKRVSQAVSAERGSLVTMLAFVNAMGNTVPPVFIFPRVNYKDFMICG 239

Query: 78  APEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRA 137
           AP GSLG  NKSGW ++E F   +KH  +  K S E+P L+LM NH++H S E I + + 
Sbjct: 240 APTGSLGLCNKSGWMTSENFLVAMKHFVSHAKPSVEHPVLLLMVNHKSHISFETITFAKE 299

Query: 138 SGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPG 181
           + + LLTFPPH +  LQPLDV+VF PFK+  +    +W + NPG
Sbjct: 300 NSLILLTFPPHCSHRLQPLDVSVFGPFKSYFRLAQNEWLASNPG 343

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449676617|ref|XP_002162876.2| PREDICTED: uncharacterized protein LOC100213942 [Hydra magnipapillata]

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 109/164 (66%)

Query: 18  SLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLG 77
           ++  PPK+++ + TK++ QA SAERG LVTM+  + A G  +PPVF+F RV  KD  + G
Sbjct: 725 TVTDPPKIISTRGTKRVSQAVSAERGSLVTMLAFVNAMGNTVPPVFIFLRVNYKDFMICG 784

Query: 78  APEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRA 137
           AP GSLG  NKSGW ++E F   +KH  +  K S E+  L+LMDNHE+H S E I + + 
Sbjct: 785 APTGSLGLCNKSGWMTSENFLVAMKHFVSHAKPSVEHQVLLLMDNHESHISFETITFAKE 844

Query: 138 SGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPG 181
           + + LLTFPPH +  LQPLDV+VF PFK+  +    +W + NPG
Sbjct: 845 NSLILLTFPPHCSHRLQPLDVSVFGPFKSYFRLAQNEWLASNPG 888

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449666581|ref|XP_004206373.1| PREDICTED: uncharacterized protein LOC101237149 [Hydra magnipapillata]

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/197 (45%), Positives = 117/197 (59%), Gaps = 10/197 (5%)

Query: 6   CLTAY----TDYWNPD-----SLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASG 56
           C+  Y     D WN D     ++  P KV+AKK  K++G   SAERG LVT+   I A G
Sbjct: 186 CMQKYLFSPNDIWNMDETAVTTVQQPKKVIAKKGLKQVGAITSAERGTLVTLACTINAIG 245

Query: 57  EAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPA 116
            +IPP F+FPR   KD FL+ AP GS G AN SGW   E F + +KH     K +KE P 
Sbjct: 246 NSIPPFFIFPRKNFKDHFLISAPTGSAGDANPSGWMKEENFVKYLKHFVGNTKCTKEKPC 305

Query: 117 LILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWT 176
           L+L+DNHETH S+E ++  + +GI +LTFPPH T +LQPLD AV+ P KN +      W 
Sbjct: 306 LLLLDNHETHLSIEGLDLAKNNGIVMLTFPPHCTHKLQPLDKAVYGPLKNYINTAMTSWL 365

Query: 177 SDNPGSSWPLMAMWPKI 193
             NPG +  +  + PKI
Sbjct: 366 VMNPGKTVTIYDI-PKI 381

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449672758|ref|XP_002157234.2| PREDICTED: kinesin family member 21A [Hydra magnipapillata]

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 117/197 (59%), Gaps = 10/197 (5%)

Query: 6    CLTAYT----DYWNPD-----SLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASG 56
            C+  Y+    D WN D     ++  P KV+AKK  K++G   SAERG LVT+   I A G
Sbjct: 1600 CMQKYSFSPNDIWNMDETAVTTVQQPKKVIAKKGLKQVGAITSAERGTLVTLACTINAIG 1659

Query: 57   EAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPA 116
             +IPP F+FPR   KD FL+ AP GS G AN SGW   E F + +KH     K +KE P 
Sbjct: 1660 NSIPPFFIFPRKNFKDHFLISAPTGSAGDANPSGWMKEENFVKYLKHFVGNTKCTKEKPC 1719

Query: 117  LILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWT 176
            L+L+DNHETH  +E ++  + +GI +LTFPPH T +LQPLD AV+ P KN +      W 
Sbjct: 1720 LLLLDNHETHLRIEGLDLAKNNGIVMLTFPPHCTHKLQPLDKAVYGPLKNYINTAMTSWL 1779

Query: 177  SDNPGSSWPLMAMWPKI 193
              NPG +  +  + PKI
Sbjct: 1780 VMNPGKTVTIYDI-PKI 1795

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449690888|ref|XP_004212494.1| PREDICTED: uncharacterized protein LOC101235029, partial [Hydra magnipapillata]

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/197 (45%), Positives = 118/197 (59%), Gaps = 10/197 (5%)

Query: 6   CLTAYT----DYWNPD-----SLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASG 56
           C+  Y+    D WN D     ++  P KV+AKK  K++G   SAERG LVT+   I A G
Sbjct: 167 CMQKYSFSPNDIWNMDETAVTTVQQPKKVIAKKGLKQVGAITSAERGTLVTLACTINAIG 226

Query: 57  EAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPA 116
            +IPP F+FPR   KD FL+ AP GS G AN SGW   E F + +KH     K +KE P 
Sbjct: 227 NSIPPFFIFPRKNFKDHFLISAPTGSAGDANPSGWMKEENFVKYLKHFVGNTKCTKEKPC 286

Query: 117 LILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWT 176
           L+L+DNHETH S+E ++  + +GI +LTFPPH T +LQPLD AV+ P KN +      W 
Sbjct: 287 LLLLDNHETHLSIEGLDLAKNNGIVMLTFPPHCTHKLQPLDKAVYGPLKNYINNAMTSWL 346

Query: 177 SDNPGSSWPLMAMWPKI 193
             NPG +  +  + PKI
Sbjct: 347 VMNPGKTVTIYDI-PKI 362

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|443733699|gb|ELU17960.1| hypothetical protein CAPTEDRAFT_141083 [Capitella teleta]

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 107/160 (66%)

Query: 22  PPKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEG 81
           PPKV+A K  K++GQ  SAERG LVTM+G I A G +IPP+ VFPRV  K+  L G+P G
Sbjct: 133 PPKVIAAKGVKQVGQITSAERGVLVTMVGCINAQGNSIPPLLVFPRVNFKEHMLHGSPPG 192

Query: 82  SLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGIT 141
           ++G AN SGW + ++F + + H      +SKENP L+L+DNHE+H S+ AI+  R +GIT
Sbjct: 193 TVGVANPSGWITKDLFLQWMDHFIQHASSSKENPTLLLLDNHESHCSIAAIDKARDAGIT 252

Query: 142 LLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPG 181
           LL+FPPH + +LQPLD  V+ P K    A    W   NPG
Sbjct: 253 LLSFPPHCSHKLQPLDRTVYGPLKKFYNAACDSWMLRNPG 292

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
ASPGD|ASPL0000031765	627	AN5233 [Emericella nidulans (t	0.563	0.191	0.314	2.1e-10
ASPGD|ASPL0000014032	461	AN11044 [Emericella nidulans (	0.643	0.297	0.295	1.4e-08
ASPGD|ASPL0000052324	462	AN0975 [Emericella nidulans (t	0.643	0.296	0.295	1.4e-08
ASPGD|ASPL0000063833	526	AN7516 [Emericella nidulans (t	0.643	0.260	0.295	1.8e-08
ASPGD|ASPL0000080187	526	AN9505 [Emericella nidulans (t	0.643	0.260	0.295	1.8e-08
ASPGD|ASPL0000071149	554	AN4391 [Emericella nidulans (t	0.643	0.247	0.295	1.9e-08
ASPGD|ASPL0000008186	554	AN6559 [Emericella nidulans (t	0.643	0.247	0.295	1.9e-08
ASPGD|ASPL0000073891	555	AN8788 [Emericella nidulans (t	0.643	0.246	0.295	1.9e-08
CGD|CAL0005175	516	orf19.2866 [Candida albicans (	0.699	0.288	0.271	2.4e-08
CGD|CAL0001980	516	orf19.3820 [Candida albicans (	0.699	0.288	0.271	2.4e-08

ASPGD|ASPL0000031765 AN5233 [Emericella nidulans (taxid:162425)]

 Score = 157 (60.3 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 40/127 (31%), Positives = 66/127 (51%)

Query:    44 ELVTMIGIIRASGEAIPPVFVFPRVFMK--DEFLLGA-PEGSLGF--ANKSGWSSTEIFF 98
             E +T I  I A G  +PP  V+     K  D +L    PE    F  ++ SGW++ ++  
Sbjct:   194 ERITAIPCICADGSKLPPGLVYQSASSKIQDTWLQDFNPEYHNCFFTSSPSGWTNDDVCL 253

Query:    99 ETIKHIQNQIKASKENPA--LILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPL 156
               ++ + ++    K      L+L+D + +  +M+ ++YC  + I L T+PPH T  LQPL
Sbjct:   254 AWLRDVFDRETKPKARGRWRLLLLDGYGSFVTMKFLDYCEENKILLATYPPHSTHTLQPL 313

Query:   157 DVAVFSP 163
             DV + SP
Sbjct:   314 DVGIISP 320

GO:0008150 "biological_process" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000014032 AN11044 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 44/149 (29%), Positives = 70/149 (46%)

Query:    24 KVVAKKRTKKLGQAASAERG--ELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEG 81
             KV+ K  ++  G+    + G  E VT I  I ASG A+PP  +F        +  G P  
Sbjct:    95 KVITK--SESCGRRPVLQPGNREWVTAIESISASGWALPPTLIFKGKQYNQAWFTGLPPD 152

Query:    82 SLGFANKSGWSSTEIFFETIKHIQNQIKASKENPA-----LILMDNHETHQSMEAIEYCR 136
                  + +GW++ EI   +++ +Q Q   S E+       L+++D H +H + E  + C 
Sbjct:   153 WRFEISTNGWTTNEI---SLRWLQKQFIPSTEHRTRGRYQLLVLDGHGSHLTPEFDQICT 209

Query:   137 ASGITLLTFPPHKTDELQPLDVAVFSPFK 165
                I  L  P H +  LQPLD+  F+  K
Sbjct:   210 DHNIIPLCMPAHSSHLLQPLDIGCFAVLK 238

GO:0008150 "biological_process" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000052324 AN0975 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 44/149 (29%), Positives = 70/149 (46%)

Query:    24 KVVAKKRTKKLGQAASAERG--ELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEG 81
             KV+ K  ++  G+    + G  E VT I  I ASG A+PP  +F        +  G P  
Sbjct:   141 KVITK--SESCGRRPVLQPGNREWVTAIESISASGWALPPTLIFKGKQYNQAWFTGLPPD 198

Query:    82 SLGFANKSGWSSTEIFFETIKHIQNQIKASKENPA-----LILMDNHETHQSMEAIEYCR 136
                  + +GW++ EI   +++ +Q Q   S E+       L+++D H +H + E  + C 
Sbjct:   199 WRFEISTNGWTTNEI---SLRWLQKQFIPSTEHRTRGRYQLLVLDGHGSHLTPEFDQICT 255

Query:   137 ASGITLLTFPPHKTDELQPLDVAVFSPFK 165
                I  L  P H +  LQPLD+  F+  K
Sbjct:   256 DHNIIPLCMPAHSSHLLQPLDIGCFAVLK 284

GO:0008150 "biological_process" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000063833 AN7516 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 44/149 (29%), Positives = 70/149 (46%)

Query:    24 KVVAKKRTKKLGQAASAERG--ELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEG 81
             KV+ K  ++  G+    + G  E VT I  I ASG A+PP  +F        +  G P  
Sbjct:   188 KVITK--SESCGRRPVLQPGNREWVTAIESISASGWALPPTLIFKGKQYNQAWFTGLPPD 245

Query:    82 SLGFANKSGWSSTEIFFETIKHIQNQIKASKENPA-----LILMDNHETHQSMEAIEYCR 136
                  + +GW++ EI   +++ +Q Q   S E+       L+++D H +H + E  + C 
Sbjct:   246 WRFEISTNGWTTNEI---SLRWLQKQFIPSTEHRTRGRYQLLVLDGHGSHLTPEFDQICT 302

Query:   137 ASGITLLTFPPHKTDELQPLDVAVFSPFK 165
                I  L  P H +  LQPLD+  F+  K
Sbjct:   303 DHNIIPLCMPAHSSHLLQPLDIGCFAVLK 331

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

ASPGD|ASPL0000080187 AN9505 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 44/149 (29%), Positives = 70/149 (46%)

Query:    24 KVVAKKRTKKLGQAASAERG--ELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEG 81
             KV+ K  ++  G+    + G  E VT I  I ASG A+PP  +F        +  G P  
Sbjct:   188 KVITK--SESCGRRPVLQPGNREWVTAIESISASGWALPPTLIFKGKQYNQAWFTGLPPD 245

Query:    82 SLGFANKSGWSSTEIFFETIKHIQNQIKASKENPA-----LILMDNHETHQSMEAIEYCR 136
                  + +GW++ EI   +++ +Q Q   S E+       L+++D H +H + E  + C 
Sbjct:   246 WRFEISTNGWTTNEI---SLRWLQKQFIPSTEHRTRGRYQLLVLDGHGSHLTPEFDQICT 302

Query:   137 ASGITLLTFPPHKTDELQPLDVAVFSPFK 165
                I  L  P H +  LQPLD+  F+  K
Sbjct:   303 DHNIIPLCMPAHSSHLLQPLDIGCFAVLK 331

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

ASPGD|ASPL0000071149 AN4391 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 44/149 (29%), Positives = 70/149 (46%)

Query:    24 KVVAKKRTKKLGQAASAERG--ELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEG 81
             KV+ K  ++  G+    + G  E VT I  I ASG A+PP  +F        +  G P  
Sbjct:   188 KVITK--SESCGRRPVLQPGNREWVTAIESISASGWALPPTLIFKGKQYNQAWFTGLPPD 245

Query:    82 SLGFANKSGWSSTEIFFETIKHIQNQIKASKENPA-----LILMDNHETHQSMEAIEYCR 136
                  + +GW++ EI   +++ +Q Q   S E+       L+++D H +H + E  + C 
Sbjct:   246 WRFEISTNGWTTNEI---SLRWLQKQFIPSTEHRTRGRYQLLVLDGHGSHLTPEFDQICT 302

Query:   137 ASGITLLTFPPHKTDELQPLDVAVFSPFK 165
                I  L  P H +  LQPLD+  F+  K
Sbjct:   303 DHNIIPLCMPAHSSHLLQPLDIGCFAVLK 331

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

ASPGD|ASPL0000008186 AN6559 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 44/149 (29%), Positives = 70/149 (46%)

Query:    24 KVVAKKRTKKLGQAASAERG--ELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEG 81
             KV+ K  ++  G+    + G  E VT I  I ASG A+PP  +F        +  G P  
Sbjct:   188 KVITK--SESCGRRPVLQPGNREWVTAIESISASGWALPPTLIFKGKQYNQAWFTGLPPD 245

Query:    82 SLGFANKSGWSSTEIFFETIKHIQNQIKASKENPA-----LILMDNHETHQSMEAIEYCR 136
                  + +GW++ EI   +++ +Q Q   S E+       L+++D H +H + E  + C 
Sbjct:   246 WRFEISTNGWTTNEI---SLRWLQKQFIPSTEHRTRGRYQLLVLDGHGSHLTPEFDQICT 302

Query:   137 ASGITLLTFPPHKTDELQPLDVAVFSPFK 165
                I  L  P H +  LQPLD+  F+  K
Sbjct:   303 DHNIIPLCMPAHSSHLLQPLDIGCFAVLK 331

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000073891 AN8788 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 44/149 (29%), Positives = 70/149 (46%)

Query:    24 KVVAKKRTKKLGQAASAERG--ELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEG 81
             KV+ K  ++  G+    + G  E VT I  I ASG A+PP  +F        +  G P  
Sbjct:   188 KVITK--SESCGRRPVLQPGNREWVTAIESISASGWALPPTLIFKGKQYNQAWFTGLPPD 245

Query:    82 SLGFANKSGWSSTEIFFETIKHIQNQIKASKENPA-----LILMDNHETHQSMEAIEYCR 136
                  + +GW++ EI   +++ +Q Q   S E+       L+++D H +H + E  + C 
Sbjct:   246 WRFEISTNGWTTNEI---SLRWLQKQFIPSTEHRTRGRYQLLVLDGHGSHLTPEFDQICT 302

Query:   137 ASGITLLTFPPHKTDELQPLDVAVFSPFK 165
                I  L  P H +  LQPLD+  F+  K
Sbjct:   303 DHNIIPLCMPAHSSHLLQPLDIGCFAVMK 331

GO:0008150 "biological_process" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0005175 orf19.2866 [Candida albicans (taxid:5476)]

 Score = 147 (56.8 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 41/151 (27%), Positives = 68/151 (45%)

Query:    26 VAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGF 85
             VA    K      S E  +  T+I  I  SGE + P  +F    ++  +           
Sbjct:   169 VAVPSYKNRTYVKSTEGRDSCTVIEAINMSGEKLIPGIIFKGQTLRTGWFNDDASDYYYS 228

Query:    86 ANKSGWSSTEIFFETIKHIQ-NQIKA-SKENPALILMDNHETHQSMEAIEYCRASGITLL 143
              +K G++S  + +  ++ +   Q+K  + +   L++MD H +H++ +  E C  + I  L
Sbjct:   229 VSKCGYTSYWLSWRWLEEVFIPQVKEKTNQGKVLLIMDGHGSHKTKKFRETCEDNNIIPL 288

Query:   144 TFPPHKTDELQPLDVAVFSPFKNRLKAGFKK 174
               PPH T  LQPLD+ +F P K   K    K
Sbjct:   289 YLPPHSTHLLQPLDLGIFGPIKYGYKVKLSK 319

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0001980 orf19.3820 [Candida albicans (taxid:5476)]

 Score = 147 (56.8 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 41/151 (27%), Positives = 68/151 (45%)

Query:    26 VAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGF 85
             VA    K      S E  +  T+I  I  SGE + P  +F    ++  +           
Sbjct:   169 VAVPSYKNRTYVKSTEGRDSCTVIEAINMSGEKLIPGIIFKGQTLRTGWFNDDASDYYYS 228

Query:    86 ANKSGWSSTEIFFETIKHIQ-NQIKA-SKENPALILMDNHETHQSMEAIEYCRASGITLL 143
              +K G++S  + +  ++ +   Q+K  + +   L++MD H +H++ +  E C  + I  L
Sbjct:   229 VSKCGYTSYWLSWRWLEEVFIPQVKEKTNQGKVLLIMDGHGSHKTKKFRETCEDNNIIPL 288

Query:   144 TFPPHKTDELQPLDVAVFSPFKNRLKAGFKK 174
               PPH T  LQPLD+ +F P K   K    K
Sbjct:   289 YLPPHSTHLLQPLDLGIFGPIKYGYKVKLSK 319

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	213
pfam03184	215	pfam03184, DDE_1, DDE superfamily endonuclease	2e-20
pfam13358	146	pfam13358, DDE_3, DDE superfamily endonuclease	2e-04

>gnl|CDD|217410 pfam03184, DDE_1, DDE superfamily endonuclease

 Score = 84.7 bits (210), Expect = 2e-20
 Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 12/171 (7%)

Query: 13  YWNPDSLVPPPKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVF----PRV 68
           +W    L+P       ++ +  G+     R     +I    A GE +PP+ +     PR 
Sbjct: 15  FWG---LLPNGTSSQPEKRRVPGKKPGKRR--WTVVICANAAGGEKLPPLVIGKGKNPRA 69

Query: 69  FMKDEFLLGAPEGSLGFANKSGWSSTEIFFE-TIKHIQNQIKASKENPALILMDNHETHQ 127
           F  ++     P      ANK+ W + EIF E   K    +++ +     L+++D H +H 
Sbjct: 70  FKFEKK--PKPLPWEYKANKNAWMTDEIFEEWLEKVFDPRMQPAPGRKVLLILDGHGSHP 127

Query: 128 SMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSD 178
           + E +  C+ + I LL  P H T  LQPLD  VFS  K   +    K    
Sbjct: 128 TDEFMRSCKLNNIILLFLPAHSTSLLQPLDQGVFSSLKAAYRRQLLKKALA 178

This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Interestingly this family also includes the CENP-B protein. This domain in that protein appears to have lost the metal binding residues and is unlikely to have endonuclease activity. Centromere Protein B (CENP-B) is a DNA-binding protein localised to the centromere. Length = 215

>gnl|CDD|222070 pfam13358, DDE_3, DDE superfamily endonuclease

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 31/134 (23%)

Query: 38  ASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIF 97
               R + V +IG +   G   P  FV       ++F                      F
Sbjct: 31  EPYGRRQRVNLIGALDPEGGLAP--FVEEGTVNAEDFAA--------------------F 68

Query: 98  FETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRAS--GITLLTFPPHKTDELQP 155
            E +     Q +       +I++DN   H+S E  E   A   GI LL  PP+ + +L P
Sbjct: 69  LEKLLKPYLQPQ-----KIVIVLDNASYHKSKEVQELVEAEAAGIELLYLPPY-SPDLNP 122

Query: 156 LDVAVFSPFKNRLK 169
           ++  V+S  K R++
Sbjct: 123 IE-LVWSVLKRRVR 135

This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
PF03184	217	DDE_1: DDE superfamily endonuclease; InterPro: IPR	100.0
PF13358	146	DDE_3: DDE superfamily endonuclease	99.51
KOG3105|consensus	488		99.21
KOG3105|consensus	488		98.62
COG3335	132	Transposase and inactivated derivatives [DNA repli	94.3
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	91.61
PHA02517	277	putative transposase OrfB; Reviewed	87.29

>PF03184 DDE_1: DDE superfamily endonuclease; InterPro: IPR004875 These proteins are probably endonucleases of the DDE superfamily

Probab=100.00  E-value=1.2e-40  Score=267.12  Aligned_cols=190  Identities=28%  Similarity=0.442  Sum_probs=151.6

Q ss_pred             CCCCCeecCCCCCCC-----CceEEeccccccccccc-CCCCceEEEE-eeeccCCcccCCeEEecccccccccc--cCC
Q psy5177           8 TAYTDYWNPDSLVPP-----PKVVAKKRTKKLGQAAS-AERGELVTMI-GIIRASGEAIPPVFVFPRVFMKDEFL--LGA   78 (213)
Q Consensus         8 ~~~~~I~N~DET~~~-----~~~~~~~g~k~v~~~~~-~~~~~~~Tvl-~~~~a~G~~lpP~~I~~~~~~~~~~~--~~~   78 (213)
                      |+|++|||+|||++.     .+++...+.+....+.. ...++++|++ +|++++|..+||++|++++.....+.  ...
T Consensus         1 y~~~~Ifn~DEt~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~t~~l~~~~a~g~~lpP~vI~~~~~~~~~~~~~~~~   80 (217)
T PF03184_consen    1 YSPSNIFNMDETGFFYGMPPKKTVVGRSKKNKKRVPGQKSDKRRVTTVLCCNSAGGEKLPPLVIFKGKRPRCFWNDVDDK   80 (217)
T ss_pred             CCHHHEEEeccceeeecCCCCceEEEEeecccccceeccCCCcccccceeeecccccccccccccccccccccccccccc
Confidence            789999999999974     45533333222222221 1114456555 55667788899999999988776665  456


Q ss_pred             CCCceeeecCCCCccHHHHHHHH-HHHHhhhhcCCCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCccc
Q psy5177          79 PEGSLGFANKSGWSSTEIFFETI-KHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLD  157 (213)
Q Consensus        79 ~~~~~~~~s~~gw~~~~~f~~wl-~~f~~~~~~~~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD  157 (213)
                      +.++.|..+++||||.++|++|| +.|.++++ ..++++|||+|++++|.+.++.++|++.||.+++||||+|+.+||||
T Consensus        81 ~~~~~~~~~~~g~~t~~~~~~wl~~~f~~~~~-~~~~~~lLllD~~~~h~~~~~~~~~~~~~i~l~~lP~~~t~~lQPld  159 (217)
T PF03184_consen   81 PLGVYYASSENGWMTTELFLEWLKKVFDPRVK-SPGRPVLLLLDSHSSHISPEFKQLCKSNNIILVFLPPNTTHLLQPLD  159 (217)
T ss_pred             cCCcccccccccccccccchhhhhhhhccccc-ccccccccccccccccccccchhhhhccccccceecccccccccccc
Confidence            78999999999999999999999 57999887 46899999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHhcCCCCC------chhhhhhhHhhHHHh
Q psy5177         158 VAVFSPFKNRLKAGFKKWTSDNPGSS------WPLMAMWPKISESSR  198 (213)
Q Consensus       158 ~~v~~~lK~~~~~~~~~~~~~~~~~~------~t~~~~~~~~~~~~~  198 (213)
                      +|+|++||..||+.+.+|+.+..+..      +++.+++..+..+|.
T Consensus       160 ~~v~~~~K~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AW~  206 (217)
T PF03184_consen  160 VGVFGPFKAHYRKKLLQWIIENGNNPKDFLYKPTLLDAIRWISKAWN  206 (217)
T ss_pred             hhhhhhhhHHHHHHHHHHHHhcccccccccCCcCHHHHHHHHHHHHH
Confidence            99999999999999999998876543      456666555555554

Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Interestingly this family also includes the CENP-B protein. This domain in that protein appears to have lost the metal binding residues and is unlikely to have endonuclease activity. Centromere Protein B (CENP-B) is a DNA-binding protein localised to the centromere []. ; GO: 0003676 nucleic acid binding

>PF13358 DDE_3: DDE superfamily endonuclease

Probab=99.51  E-value=1.4e-14  Score=108.31  Aligned_cols=129  Identities=24%  Similarity=0.337  Sum_probs=103.6

Q ss_pred             CeecCCCCCCC-----CceEEecccccccccccCCCCceEEEEeeeccCCcccCCeEEecccccccccccCCCCCceeee
Q psy5177          12 DYWNPDSLVPP-----PKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFA   86 (213)
Q Consensus        12 ~I~N~DET~~~-----~~~~~~~g~k~v~~~~~~~~~~~~Tvl~~~~a~G~~lpP~~I~~~~~~~~~~~~~~~~~~~~~~   86 (213)
                      +|+.+||+++.     .+.+..+|.+.. ......+.++++++.|++..|.... .                        
T Consensus         1 ~vv~~DE~~~~~~~~~~~~w~~~g~~~~-~~~~~~~~~~~~~~~ai~~~~~~~~-~------------------------   54 (146)
T PF13358_consen    1 RVVFSDESGFNLRPRRGRGWSPKGERPR-VRKSYGRGGRVSVWGAISYNGGIVL-F------------------------   54 (146)
T ss_pred             CEEEEeCCCCccCCCCCceEeeCCceeE-EEEeCCCCCEEEEEEEecccccccc-e------------------------
Confidence            68999999875     677888887743 2334444569999999999985433 1                        


Q ss_pred             cCCCCccHHHHHHHHHHHHhhhhcCCCCCeEEeccCCCcccchHHHHHHHH--cCcEEEeeCCCCCCCcCcccccccHHH
Q psy5177          87 NKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRA--SGITLLTFPPHKTDELQPLDVAVFSPF  164 (213)
Q Consensus        87 s~~gw~~~~~f~~wl~~f~~~~~~~~~~~~lLllD~~~~H~~~~~~~~~~~--~~i~l~~lP~~~t~~lQPlD~~v~~~l  164 (213)
                      ...|.+|++.|.+||+.+......  ..+++|++||++.|.+..+.+.+++  .++.++++||++.. |+|++ .+++.+
T Consensus        55 ~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~li~DNa~~H~~~~~~~~l~~~~~~~~~~~~P~~sPd-LNpiE-~~w~~l  130 (146)
T PF13358_consen   55 VVEGTMNSEDFIEFLEQLLRPYPR--KGRIVLIMDNASIHKSKKVQEWLEEHERGIELLFLPPYSPD-LNPIE-NVWGYL  130 (146)
T ss_pred             eeeeeecccccccccccccccccc--ceEEEEecccccccccccccceeeccccccccccccCcCCc-cCHHH-HHHHHH
Confidence            125688899999999876654432  1189999999999999999999988  99999999999988 78999 899999


Q ss_pred             HHHHHH
Q psy5177         165 KNRLKA  170 (213)
Q Consensus       165 K~~~~~  170 (213)
                      |..+++
T Consensus       131 k~~~~~  136 (146)
T PF13358_consen  131 KRRIRR  136 (146)
T ss_pred             HHHHHh
Confidence            998887

>KOG3105|consensus

Probab=99.21  E-value=6.4e-12  Score=112.64  Aligned_cols=176  Identities=16%  Similarity=0.173  Sum_probs=130.3

Q ss_pred             cccccCCCCCeecCCCCCCC-----CceEEeccccccc-ccccCCCCceEEEEeeeccCCcccCCeEEeccccccccccc
Q psy5177           3 GTACLTAYTDYWNPDSLVPP-----PKVVAKKRTKKLG-QAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLL   76 (213)
Q Consensus         3 ~~~~~~~~~~I~N~DET~~~-----~~~~~~~g~k~v~-~~~~~~~~~~~Tvl~~~~a~G~~lpP~~I~~~~~~~~~~~~   76 (213)
                      .....|++..++++|||++.     ..+.+..|.+.+. ....+....+.|++.++.++|..+||+++++++..+..   
T Consensus       228 ~~~~~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~v~~V~~~~s~~~h~~~~~~i~~~g~~~p~~~~l~~~~~p~~---  304 (488)
T KOG3105|consen  228 PELSNYHPSMIFNADETGFQKEFWLRRTLAEMGEKEVELVQSLDSLTHHPTVLPMIRADGSKGPAYIVLPEKKFPPD---  304 (488)
T ss_pred             cccccCChhhccccccchhhhhhhhhcccccccceEEEEEEecCCCCcchHHHHHHhhccCcCcceeeccccCCCCc---
Confidence            34567999999999999864     6778888888874 33334446799999999999999999999987733221   


Q ss_pred             CCCCCceeeecCCCCccHHHHHHHHH-HHHhhhh-cCCCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcC
Q psy5177          77 GAPEGSLGFANKSGWSSTEIFFETIK-HIQNQIK-ASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQ  154 (213)
Q Consensus        77 ~~~~~~~~~~s~~gw~~~~~f~~wl~-~f~~~~~-~~~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQ  154 (213)
                      ..+....-..-..|| +..++..|+. .+...+. .......+|.+|++++|........+...++....+|+|+|..+|
T Consensus       305 ~~i~~~~k~~~r~~~-~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~s~~~~~~~~~~ip~~~ts~iq  383 (488)
T KOG3105|consen  305 QGIINRFKLEYRAGW-KEHLMEKELMRDWLESCVGLPAVPKKLLAWDSWPEHKEDATKQSLKLLDVDIRVIPGGTTSFIQ  383 (488)
T ss_pred             CCcchHHHHHHHhhh-hhhhhhhhhhhhhhhhcccccccccceeeecccHHHHHHHHHHhhhhccccccccCCccceeec
Confidence            111111111223466 6666666653 3444332 122345677779999999999999888789999999999999999


Q ss_pred             cccccccHHHHHHHHHHHHHHHhcCCCC
Q psy5177         155 PLDVAVFSPFKNRLKAGFKKWTSDNPGS  182 (213)
Q Consensus       155 PlD~~v~~~lK~~~~~~~~~~~~~~~~~  182 (213)
                      |+|+.++.++|...++....+.....+.
T Consensus       384 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~  411 (488)
T KOG3105|consen  384 PLDVYWNSPWKNLIKKFTADELRAQIDD  411 (488)
T ss_pred             ccceeecccchhhhhhhHHHHHHhcccc
Confidence            9999999999999999998888876554

>KOG3105|consensus

Probab=98.62  E-value=1e-08  Score=92.04  Aligned_cols=157  Identities=13%  Similarity=0.045  Sum_probs=105.0

Q ss_pred             cCCCCCeecCCCCCCCCceEEecc-cccccccccCCCCceEEEEeeeccCCcc-cCCeEEeccccccccccc---CCCCC
Q psy5177           7 LTAYTDYWNPDSLVPPPKVVAKKR-TKKLGQAASAERGELVTMIGIIRASGEA-IPPVFVFPRVFMKDEFLL---GAPEG   81 (213)
Q Consensus         7 ~~~~~~I~N~DET~~~~~~~~~~g-~k~v~~~~~~~~~~~~Tvl~~~~a~G~~-lpP~~I~~~~~~~~~~~~---~~~~~   81 (213)
                      .+.++++|++|||++..+.+...+ .......  ...++++|+++|.+++|.. +|+.++.+...+.+....   ..+..
T Consensus       155 ~~~~~~~~~~~et~l~~~~~~~~~~~as~~~~--~r~k~r~~L~~~~~a~g~~kl~~~~~~k~~~p~~~~~~~~~~~~~~  232 (488)
T KOG3105|consen  155 DPIPDDILRQKATGLNWKLLPLEGFKASLGWL--KRWKRRHTLVLRRNADGVTKLPLDLKGKKVLPASFFEANNRPELSN  232 (488)
T ss_pred             CCchHHHHHHHHHHHHHhhCcccccceecchH--HhhhhhheeeeeeccCccccCcHHHHHHhhchHHHHhhcccccccc
Confidence            456788999999987622222111 0001001  1125789999999999999 777777655544322222   22334


Q ss_pred             ceeeecCCCCccHHHHHHHHHHHHhhhhcCCCCCe--EEeccCCCcccchHHHHHHHHcCcE-EEeeCCCCCCCcCcccc
Q psy5177          82 SLGFANKSGWSSTEIFFETIKHIQNQIKASKENPA--LILMDNHETHQSMEAIEYCRASGIT-LLTFPPHKTDELQPLDV  158 (213)
Q Consensus        82 ~~~~~s~~gw~~~~~f~~wl~~f~~~~~~~~~~~~--lLllD~~~~H~~~~~~~~~~~~~i~-l~~lP~~~t~~lQPlD~  158 (213)
                      +.+......|++...+..|...+.....   .+.+  |+.+|+.+.|.+....-......+. .+++|..    .||+++
T Consensus       233 ~~~~~~~~a~~t~~~~~~~~~~~~~~~~---~~~v~~V~~~~s~~~h~~~~~~i~~~g~~~p~~~~l~~~----~~p~~~  305 (488)
T KOG3105|consen  233 YHPSMIFNADETGFQKEFWLRRTLAEMG---EKEVELVQSLDSLTHHPTVLPMIRADGSKGPAYIVLPEK----KFPPDQ  305 (488)
T ss_pred             CChhhccccccchhhhhhhhhccccccc---ceEEEEEEecCCCCcchHHHHHHhhccCcCcceeecccc----CCCCcC
Confidence            5556667888888888888876544332   3334  8999999999887655554444444 4667766    899999


Q ss_pred             cccHHHHHHHHHHH
Q psy5177         159 AVFSPFKNRLKAGF  172 (213)
Q Consensus       159 ~v~~~lK~~~~~~~  172 (213)
                      ++...+|..||..+
T Consensus       306 ~i~~~~k~~~r~~~  319 (488)
T KOG3105|consen  306 GIINRFKLEYRAGW  319 (488)
T ss_pred             CcchHHHHHHHhhh
Confidence            99999999999987

>COG3335 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=94.30  E-value=0.3  Score=34.81  Aligned_cols=69  Identities=22%  Similarity=0.352  Sum_probs=54.4

Q ss_pred             eecCCCCccHHHHHHHHHHHHhhhhcCCCCCeEEeccC-CCcccchHHHHHHHHcCcEEEeeCCCCCCCcCccc
Q psy5177          85 FANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDN-HETHQSMEAIEYCRASGITLLTFPPHKTDELQPLD  157 (213)
Q Consensus        85 ~~s~~gw~~~~~f~~wl~~f~~~~~~~~~~~~lLllD~-~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD  157 (213)
                      .....+.++.+.+..|++.+.....  . .+..+++|+ ...|....+...++..+..++++||+++.. .|..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~flp~y~p~~-n~ie   85 (132)
T COG3335          16 RMGLITEANKKFFIGFLRIYLWLVL--K-KPIVLILDNVASFHRKKALKEDAEENGIHLLFLPPYSPDL-NPIE   85 (132)
T ss_pred             EeeeccccCHHHHHHHHHHHhhhhc--c-CceEEEecCCcccchHHHHHHHHHhCCccEEEcCCCCCCc-cHHH
Confidence            3445677889999999987655432  3 678999999 888888889999999999999999999874 3544

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=91.61  E-value=0.47  Score=33.54  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=33.0

Q ss_pred             CeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCC
Q psy5177         115 PALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTD  151 (213)
Q Consensus       115 ~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~  151 (213)
                      |..|..|+.+...+..+.++|+..+|.+.+.||+..+
T Consensus        68 p~~i~tD~g~~f~~~~~~~~~~~~~i~~~~~~~~~p~  104 (120)
T PF00665_consen   68 PRVIRTDNGSEFTSHAFEAWCKHLGIKHVFTPPYTPQ  104 (120)
T ss_dssp             -SEEEEESCHHHHSHHHHHHHHHHT-EEEESSTSSTH
T ss_pred             ceecccccccccccchhhhHHHHcCceEeeCCCCChh
Confidence            8999999999999999999999999999999999854

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PHA02517 putative transposase OrfB; Reviewed

Probab=87.29  E-value=4.1  Score=33.60  Aligned_cols=82  Identities=11%  Similarity=0.058  Sum_probs=54.4

Q ss_pred             eeecCCCCccHHHHHHHHHHHHhhhhcCCCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHH
Q psy5177          84 GFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSP  163 (213)
Q Consensus        84 ~~~s~~gw~~~~~f~~wl~~f~~~~~~~~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~  163 (213)
                      +.+.-+.-++.+...+.|+.......  ....+++..|+-+...+..+..+|.+.||...+.+|++..---+++ .+|+.
T Consensus       141 ~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~i~~sD~G~~y~s~~~~~~~~~~gi~~~~~~~~~P~~N~~iE-r~~~t  217 (277)
T PHA02517        141 VGWRVSSSMDTDFVLDALEQALWARG--RPGGLIHHSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAE-SINGL  217 (277)
T ss_pred             eecccCCCCChHHHHHHHHHHHHhcC--CCcCcEeecccccccchHHHHHHHHHcCcccccCCCCCCCCccccc-hhHhh
Confidence            33444556788888888876433211  1233566688887778889999999999999999999844332333 34555


Q ss_pred             HHHHH
Q psy5177         164 FKNRL  168 (213)
Q Consensus       164 lK~~~  168 (213)
                      ||..+
T Consensus       218 lK~e~  222 (277)
T PHA02517        218 YKAEV  222 (277)
T ss_pred             hhhhh
Confidence            56544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
2f7t_A	227	MOS1 transposase; RNAse-H like fold, DDD motif, DN	99.18
3f2k_A	226	Histone-lysine N-methyltransferase setmar; histone	99.07
3hot_A	345	Transposable element mariner, complete CDS; protei	99.05
1cxq_A	162	Avian sarcoma virus integrase; mixed beta-sheet su	91.47
3kks_A	152	Integrase, IN; beta-strands flanked by alpha-helic	88.26
1c0m_A	238	Protein (integrase); HIV, X-RAY crystallography, p	85.87
2x78_A	200	Integrase; viral protein, DNA-directed DNA polyme	84.97
3hph_A	219	Integrase, IN; protein-protein complex, tetramer,	83.78

>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding protein; 2.25A {Drosophila mauritiana}

Probab=99.18  E-value=3.5e-11  Score=96.15  Aligned_cols=136  Identities=13%  Similarity=0.122  Sum_probs=89.4

Q ss_pred             CCCeecCCCCCCC------CceEEecccccccccccCCCCceEEEEeeeccCCcccCCeEEecccccccccccCCCCCce
Q psy5177          10 YTDYWNPDSLVPP------PKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSL   83 (213)
Q Consensus        10 ~~~I~N~DET~~~------~~~~~~~g~k~v~~~~~~~~~~~~Tvl~~~~a~G~~lpP~~I~~~~~~~~~~~~~~~~~~~   83 (213)
                      ..+|+..||+++.      .+.+..+|.+............++.+..|++++|.. .+.++                   
T Consensus        31 ~~~Ivf~DE~~f~~~~~~~~~~W~~~ge~~~~~~~~~~~~~~vmv~g~~~~~G~~-~~~~~-------------------   90 (227)
T 2f7t_A           31 LHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVI-YYELL-------------------   90 (227)
T ss_dssp             GGGEEEEEEEEEEBCCCC-----------------------EEEEEEEEETTEEE-EEEEC-------------------
T ss_pred             hhheEeccCCEEEecCccccccccCCCCCCcceeccccccCeeEEEEEEecCceE-EeEec-------------------
Confidence            4679999998752      455666776443222222223567888888888732 22221                   


Q ss_pred             eeecCCCCccHHHHHHHHHHHHhhhhcC-----CCCC-eEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCccc
Q psy5177          84 GFANKSGWSSTEIFFETIKHIQNQIKAS-----KENP-ALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLD  157 (213)
Q Consensus        84 ~~~s~~gw~~~~~f~~wl~~f~~~~~~~-----~~~~-~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD  157 (213)
                         .+.|-+|++.+.++|+.+.+.+.+.     .++. +++++||++.|.+..+.+++.+.++.++++||++.. |.|+|
T Consensus        91 ---~~~~~in~~~y~~~L~~l~~~~~~~~p~~~~~~~~~~~~~Dna~~H~~~~~~~~~~~~~~~~~~~p~ysPd-lnpie  166 (227)
T 2f7t_A           91 ---KPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPD-LAPSD  166 (227)
T ss_dssp             ---CTTCCCCHHHHHHHHHHHHHHHHHHCHHHHTTSSCCEEECCCCGGGGSHHHHHHHHHHTCEECCCCTTCGG-GCHHH
T ss_pred             ---CCCceecHHHHHHHHHHHHHHHHHhChHhhccCCceEEEECCCchhhhHHHHHHHHHhCcccccCCCCCCC-cCccc
Confidence               2357899999999998777765421     1233 899999999999999999999999999999999988 67999


Q ss_pred             ccccHHHHHHHH
Q psy5177         158 VAVFSPFKNRLK  169 (213)
Q Consensus       158 ~~v~~~lK~~~~  169 (213)
                      ..+++.+|..++
T Consensus       167 ~~~w~~lk~~l~  178 (227)
T 2f7t_A          167 YHLFASMGHALA  178 (227)
T ss_dssp             HTHHHHHHHHHH
T ss_pred             chhhHHHHHHHh
Confidence            778888887654

>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A

Probab=99.07  E-value=2.4e-10  Score=91.42  Aligned_cols=135  Identities=17%  Similarity=0.184  Sum_probs=88.4

Q ss_pred             CCCeecCCCCCCC------CceEEecccccccccccCCCCceEEEEeeeccCCcccCCeEEecccccccccccCCCCCce
Q psy5177          10 YTDYWNPDSLVPP------PKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSL   83 (213)
Q Consensus        10 ~~~I~N~DET~~~------~~~~~~~g~k~v~~~~~~~~~~~~Tvl~~~~a~G~~lpP~~I~~~~~~~~~~~~~~~~~~~   83 (213)
                      .++|...||+.+.      .+.+..+|..............+++|..|.+++|.. ++.+                    
T Consensus        31 ~~~iv~~DE~~~~~~n~~~~~~W~~~ge~~~~~~~~~~~~~~vmv~~~~s~~G~~-~~~~--------------------   89 (226)
T 3f2k_A           31 LDRIVTCDEKWILYDNRRRSAQWLDQEEAPKHFPKPILHPKKVMVTIWWSAAGLI-HYSF--------------------   89 (226)
T ss_dssp             GGGEEEEEEEEEESBCC---------------------CCCEEEEEEEEETTEEE-EEEE--------------------
T ss_pred             hHhEEEeccceEEEecccceeeecCCCCCCccccccccCCcceEEEEEeecCCcE-EEEE--------------------
Confidence            3678899997652      345556665433222222334588999999999843 1111                    


Q ss_pred             eeecCCCCccHHHHHHHHHHHHhh---hhcC--CCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccc
Q psy5177          84 GFANKSGWSSTEIFFETIKHIQNQ---IKAS--KENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDV  158 (213)
Q Consensus        84 ~~~s~~gw~~~~~f~~wl~~f~~~---~~~~--~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~  158 (213)
                        ..+.|-||++.+.+.|+.+.+.   ..+.  ..+.++|+.||++.|.+..+.+++.+.++.+++.||++.. |.|+|.
T Consensus        90 --l~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~~H~~~~~~~~l~~~~~~~~~~P~ySPd-lnpie~  166 (226)
T 3f2k_A           90 --LNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPHVAQPTLQKLNELGYEVLPHPPYSPD-LLPTNY  166 (226)
T ss_dssp             --CCTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCHHHHSTTHHHHHHHHTCEECCCCTTCGG-GCHHHH
T ss_pred             --ecCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCccchhhhHHHHHHhhcceeecCCCCCCC-cchHHH
Confidence              2334679999999998765332   2221  2456899999999999999999999999999999999998 679997


Q ss_pred             cccHHHHHHH
Q psy5177         159 AVFSPFKNRL  168 (213)
Q Consensus       159 ~v~~~lK~~~  168 (213)
                      .+++.+|..+
T Consensus       167 ~~w~~lk~~l  176 (226)
T 3f2k_A          167 HVFKHLNNFL  176 (226)
T ss_dssp             THHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7888888765

>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*

Probab=99.05  E-value=3.6e-10  Score=95.24  Aligned_cols=135  Identities=13%  Similarity=0.132  Sum_probs=100.8

Q ss_pred             CCCeecCCCCCCC------CceEEecccccccccccCCCCceEEEEeeeccCCcccCCeEEecccccccccccCCCCCce
Q psy5177          10 YTDYWNPDSLVPP------PKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSL   83 (213)
Q Consensus        10 ~~~I~N~DET~~~------~~~~~~~g~k~v~~~~~~~~~~~~Tvl~~~~a~G~~lpP~~I~~~~~~~~~~~~~~~~~~~   83 (213)
                      ..+|+..||+++.      .+.+..+|..............++.+..|++.+|. +.+.++                   
T Consensus       149 ~~~Iv~~DE~~~~~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~v~~~~~~~g~-~~~~~~-------------------  208 (345)
T 3hot_A          149 LHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGV-IYYELL-------------------  208 (345)
T ss_dssp             GGGEEEEEEEEEESCCCCCCEEEECSSSCCCCEECCCTTCCEEEEEEEEESSSE-EEEEEE-------------------
T ss_pred             HHhhhcccceeEEecCccceeeeccCCCCCCCCcCccCcCCcEEEEEEEcccCc-eeeEec-------------------
Confidence            4689999998653      55677777655433333333458889999988882 222221                   


Q ss_pred             eeecCCCCccHHHHHHHHHHHHhhhhcC-C-----CCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCccc
Q psy5177          84 GFANKSGWSSTEIFFETIKHIQNQIKAS-K-----ENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLD  157 (213)
Q Consensus        84 ~~~s~~gw~~~~~f~~wl~~f~~~~~~~-~-----~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD  157 (213)
                         ...|-+|.+.+.++|+.+.+.+... +     +++++|+.||.+.|.+..+.+++.++++.+++.||++.. +.|+|
T Consensus       209 ---~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~h~~~~~~~~l~~~~~~~~~~p~~spd-lnpie  284 (345)
T 3hot_A          209 ---KPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPD-LAPSD  284 (345)
T ss_dssp             ---CSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCTTTTSHHHHHHHHHTTCEECCCCTTCGG-GCHHH
T ss_pred             ---CCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCCccccHHHHHHHHHcCcEeccCCCCCCC-ccccc
Confidence               2346799999999998776655331 1     457899999999999999999999999999999999987 56999


Q ss_pred             ccccHHHHHHH
Q psy5177         158 VAVFSPFKNRL  168 (213)
Q Consensus       158 ~~v~~~lK~~~  168 (213)
                      ..+|+.+|..+
T Consensus       285 ~~~~~~lk~~~  295 (345)
T 3hot_A          285 YHLFASMGHAL  295 (345)
T ss_dssp             HTHHHHHHHHH
T ss_pred             chhhHHHHHHh
Confidence            88889888654

>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A

Probab=91.47  E-value=0.95  Score=32.79  Aligned_cols=78  Identities=17%  Similarity=0.087  Sum_probs=54.0

Q ss_pred             ccHHHHHHHHHHHHhhhhcCCCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHH
Q psy5177          92 SSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG  171 (213)
Q Consensus        92 ~~~~~f~~wl~~f~~~~~~~~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~  171 (213)
                      .+.+...+.|+......    +.|..+..|+-+...+..+.++|++.||...+.+|++     |-+.|....+-..++++
T Consensus        49 ~~~~~v~~~l~~~~~~~----g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~-----p~~ng~~Er~~~tlk~~  119 (162)
T 1cxq_A           49 VTSVAAQHHWATAIAVL----GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGN-----SQGQAMVERANRLLKDK  119 (162)
T ss_dssp             CCHHHHHHHHHHHHHHH----CCCSEEECCSCHHHHSHHHHHHHHHHTCEEECCCCC---------CHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHH----CCCeEEEeCCchhhhhHHHHHHHHHCCCeEeeCCCCC-----CccCCEEehHHHHHHHH
Confidence            55666666665533322    4567999999999999999999999999999999987     55666666666666666


Q ss_pred             HHHHHhc
Q psy5177         172 FKKWTSD  178 (213)
Q Consensus       172 ~~~~~~~  178 (213)
                      +.....+
T Consensus       120 ~~~~~~~  126 (162)
T 1cxq_A          120 IRVLAEG  126 (162)
T ss_dssp             HHHHHHH
T ss_pred             HHHHcCc
Confidence            5555443

>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A

Probab=88.26  E-value=1.6  Score=30.78  Aligned_cols=57  Identities=21%  Similarity=0.215  Sum_probs=45.8

Q ss_pred             CeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHHHHHHH
Q psy5177         115 PALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWT  176 (213)
Q Consensus       115 ~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~~~~~~  176 (213)
                      |..+..|+-+...+..+.++|+..||...+.+|+.     |-+.|....+-..+++.+....
T Consensus        54 p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~-----p~~ng~~Er~~~~lk~~~~~~~  110 (152)
T 3kks_A           54 VLHLHSDNGPCFTAHRIENLCKYLGITKTTGIPYN-----PQSQGVVERAHRDLKDRLAAYQ  110 (152)
T ss_dssp             CSEEEECSCHHHHSHHHHHHHHHTTCEEEESSCSC-----HHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CcEEecCCchHhhHHHHHHHHHHcCCeecccCCcC-----CCccchhHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999886     6666766666666666555444

>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A

Probab=85.87  E-value=3.4  Score=32.04  Aligned_cols=74  Identities=18%  Similarity=0.102  Sum_probs=52.3

Q ss_pred             ccHHHHHHHHHHHHhhhhcCCCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHH
Q psy5177          92 SSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG  171 (213)
Q Consensus        92 ~~~~~f~~wl~~f~~~~~~~~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~  171 (213)
                      .+.+...+-|+..+...    +.|..+..|+-+...+..+.++|++.||...+.+|+.     |-+.|....+-..+++.
T Consensus        48 ~~~~~v~~~l~~~~~~~----g~p~~i~sDnG~~f~s~~~~~~~~~~gI~~~~~~p~~-----p~~ng~vEr~~~tlk~~  118 (238)
T 1c0m_A           48 VTSVAVQHHWATAIAVL----GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGN-----SQGQAMVERANRLLKDR  118 (238)
T ss_dssp             CCHHHHHHHHHHHHHHH----CCCSEEEECSCHHHHSHHHHHHHHHHTCEEEECCSSS-----STTSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh----CCCcEEEECCCCccccHHHHHHHHHCCCEEEecCCCC-----cccccHHHHHHHHHHHH
Confidence            55666555555433322    3467999999999999999999999999999999987     55666555555555544


Q ss_pred             HHH
Q psy5177         172 FKK  174 (213)
Q Consensus       172 ~~~  174 (213)
                      +..
T Consensus       119 ~~~  121 (238)
T 1c0m_A          119 IRV  121 (238)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A

Probab=84.97  E-value=4.7  Score=29.93  Aligned_cols=60  Identities=20%  Similarity=0.199  Sum_probs=40.9

Q ss_pred             CCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHHHHHHHh
Q psy5177         113 ENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTS  177 (213)
Q Consensus       113 ~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~~~~~~~  177 (213)
                      +.|..+..|+-+...+..+.++|+..||...+.+|++     |-+.|....+-..+++.+...+.
T Consensus        68 g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~-----p~~ng~~Er~~~~l~~~~~~~~~  127 (200)
T 2x78_A           68 AIPRVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYH-----PQSGSKVERKNSDIKRLLTKLLV  127 (200)
T ss_dssp             CCCSEEEECSCHHHHSHHHHHHHHHHTCEEEECC------------CHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEecCCcceehHHHHHHHHHcCceEeECCCCC-----CCccCHhHhhHHHHHHHHHHHHh
Confidence            5678999999999999999999999999999999997     44555555555555554444443

>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A

Probab=83.78  E-value=2.1  Score=32.53  Aligned_cols=58  Identities=21%  Similarity=0.184  Sum_probs=46.6

Q ss_pred             CeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHHHHHHHh
Q psy5177         115 PALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTS  177 (213)
Q Consensus       115 ~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~~~~~~~  177 (213)
                      |..+..|+-+...+..+.++|+..||...+.+|+.     |-+.|....+-..++..+.....
T Consensus       112 p~~i~sDnG~~F~s~~~~~~~~~~gi~~~~s~p~~-----p~~nG~~Er~~~~lk~~l~~~~~  169 (219)
T 3hph_A          112 PKSLQSDNGPAFVAESTQLLMKYLGIEHTTGIPWN-----PQSQALVERTHQTLKNTLEKLIP  169 (219)
T ss_dssp             CCEEEECCCHHHHSHHHHHHHHHHTCEEEESCCCC-----HHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             CcEEEeCCCchhhhHHHHHHHHHcCCeEeECCCCC-----CcccChhhhHHHHHHHHHHHHhc
Confidence            77999999999999999999999999999998886     66777766666666665554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	213
d1cxqa_	147	Retroviral integrase, catalytic domain {Rous sarco	94.18
d1exqa_	154	Retroviral integrase, catalytic domain {Human immu	86.97

>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Rous sarcoma virus RSV [TaxId: 11886]

Probab=94.18  E-value=0.21  Score=34.28  Aligned_cols=75  Identities=16%  Similarity=0.101  Sum_probs=49.3

Q ss_pred             ccHHHHHHHHHHHHhhhhcCCCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHH
Q psy5177          92 SSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG  171 (213)
Q Consensus        92 ~~~~~f~~wl~~f~~~~~~~~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~  171 (213)
                      .+......++..+....    +.|..+..|+-+...+.++.++|++.||...+.+|++... +..=.-.++.+|..++..
T Consensus        45 ~t~~~~~~~l~~~~~~~----g~p~~i~sDnG~~F~s~~~~~~~~~~gI~~~~~~p~~P~~-ng~vER~~~tlk~~~~~~  119 (147)
T d1cxqa_          45 VTSVAAQHHWATAIAVL----GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQG-QAMVERANRLLKDKIRVL  119 (147)
T ss_dssp             CCHHHHHHHHHHHHHHH----CCCSEEECCSCHHHHSHHHHHHHHHHTCEEECCCCC-----CHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHh----CCCeEEEecccccccchhhhhhhhheeEEeeeeccchhhc-CceeehhhHHHHHHHHHH
Confidence            44555556665544433    5678999999999999999999999999999999987542 222223344455444443

>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=86.97  E-value=0.57  Score=32.27  Aligned_cols=52  Identities=13%  Similarity=0.037  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCC
Q psy5177          95 EIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTD  151 (213)
Q Consensus        95 ~~f~~wl~~f~~~~~~~~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~  151 (213)
                      +.....|..+...     ..|..+..|+-+...+..+.++|++.||...+-.|+...
T Consensus        40 ~~v~~~l~~~~~~-----~~p~~I~sDnG~eF~s~~~~~~~~~~gi~~~~s~p~~Pq   91 (154)
T d1exqa_          40 QETAYFLLKLAGR-----WPVKTIHTDNGSNFTGATVRAACDWAGIKQEDGIPYNPQ   91 (154)
T ss_dssp             HHHHHHHHHHHHH-----SCCCEEECCCCGGGTSHHHHHHHHHHTCEECSCCCC---
T ss_pred             HHHHhhhhhheec-----cCCCEEEEcCCccccchhhhhhhhhcccccccccCcccc
Confidence            3444555443332     335678999999999999999999999999998887533