Psyllid ID: psy5197

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560----
IYPKHDITNIVESSNYVKITNWCKVGHSKCKHTDWVKPYRCLEGPFQSDALLVPEHCVFDHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDKERERFLEKQRKEVHKHEREELREEKARVKAAAEGRTYEPTGPSTPIPPGVDAHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERHVANMQINGYENPTYKYFEIKDYDSYENIVSPSSGPASSTTTPTSTATTKSHATTRVPTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLLSLTREAEEAILDKYKAQVIAMQEDFY
ccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEcccccccccccccccccEEcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccc
ccccccEEEEEEccccEEcccccccccccccccEEEEEEEEccccccccHEEcccccEEccccccHHcccHHHHHHHHHHHHHHcccEEcccccccccccccccEEEEEEccccccccHHHHHHHHHHccHHHHHHccHHHHcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcccEcccEEEEcccccHHHHHHHHHHHcccccccEEEEEEccccccEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcc
iypkhditnivessnYVKITNwckvghskckhtdwvkpyrclegpfqsdallvpehcvfdhihnqskCWEYERWNQTAAQSCLERDLSLRSFAMLLPCgislfagvefvccpmkdKERERFLEKQRKEVHKHEREELREEKARVKAAAegrtyeptgpstpippgvdahppyssqrhdtvqpayamshdlsigepsylrhevrprgdskgVYVTVVFAGLAVMAAVFIAMTVLkrrsarspqnlcNVFFYFQGFievdqaatpeerhVANMQingyenptykyfeikdydsyenivspssgpasstttptstattkshattrvptpdpyfthfepkdehHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQdmrskspgvaedFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNldfavkekpmtlehLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALrskdetpgslLSLTREAEEAILDKYKAQVIAMQEDFY
iypkhditnivessnyVKITNWCKVGHSKCKHTDWVKPYRCLEGPFQSDALLVPEHCVFDHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDKERERFLekqrkevhkhereelreekARVKAaaegrtyeptgpstpippGVDAHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERHVANMQINGYENPTYKYFEIKDYDSYENIVSpssgpasstttptstattkshattrvptpdpYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEEryqdmrskspgvaEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRskdetpgsLLSLTREAEEAILDKYKAQVIAMQEDFY
IYPKHDITNIVESSNYVKITNWCKVGHSKCKHTDWVKPYRCLEGPFQSDALLVPEHCVFDHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDKERERFLEKQrkevhkhereelreekarvkaaaeGRTYEPTGPSTPIPPGVDAHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERHVANMQINGYENPTYKYFEIKDYDSYENIVspssgpasstttptstattkshattRVPTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLLSLTREAEEAILDKYKAQVIAMQEDFY
******ITNIVESSNYVKITNWCKVGHSKCKHTDWVKPYRCLEGPFQSDALLVPEHCVFDHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPM**********************************************************************************************SKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERHVANMQINGYENPTYKYFEIKDYDSYENI*******************************************************************************************************************LIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDY************************ILDKYKAQV********
IYPKHDITNIVESSNYVKITNWCKVGHSKCKHTDWVKPYRCLEGPFQSDALLVPEHCVFDHIHNQSKCWEYERWNQTAAQ*C***DLSLRSFAMLLPCGISLFAGVEFVC********************************************************************************************************VVFAGLAVMAAVFIAMTVLKRRS**********FFYFQGFI***************M****Y*******FEIKDYDS*****************************************************************************************************F***********************QRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHL************PMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYM****************************************
IYPKHDITNIVESSNYVKITNWCKVGHSKCKHTDWVKPYRCLEGPFQSDALLVPEHCVFDHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDKERERFLEKQ*******************************GPSTPIPPGVDAHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERHVANMQINGYENPTYKYFEIKDYDSYENIV*************************RVPTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLLSLTREAEEAILDKYKAQVIAMQEDFY
IYPKHDITNIVESSNYVKITNWCKVGHSKCKHTDWVKPYRCLEGPFQSDALLVPEHCVFDHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDKE***FLEKQRKEV***************************************************Q*A*****DLSIGEPSYLRHEVRPRGDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERHVANMQINGYENPTYKYFEIKDYDSYENIVSP***************************PDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRS***********T*EAEEAILDKYKAQVIAMQEDF*
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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IYPKHDITNIVESSNYVKITNWCKVGHSKCKHTDWVKPYRCLEGPFQSDALLVPEHCVFDHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDKERERFxxxxxxxxxxxxxxxxxxxxxxxxxxAEGRTYEPTGPSTPIPPGVDAHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERHVANMQINGYENPTYKYFEIKDYDSYENIVSPSSGPASSTTTPTSTATTKSHATTRVPTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLLSLTxxxxxxxxxxxxxxxxxxxxxFY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query564 2.2.26 [Sep-21-2011]
P14599 887 Beta-amyloid-like protein yes N/A 0.420 0.267 0.618 5e-85
Q10651 686 Beta-amyloid-like protein yes N/A 0.358 0.294 0.401 1e-33
O73683 780 Amyloid beta A4 protein O N/A N/A 0.221 0.160 0.472 4e-29
O93279737 Amyloid beta A4 protein O N/A N/A 0.198 0.151 0.504 7e-29
P12023 770 Amyloid beta A4 protein O no N/A 0.205 0.150 0.495 1e-28
P08592 770 Amyloid beta A4 protein O yes N/A 0.205 0.150 0.495 1e-28
Q5IS80 770 Amyloid beta A4 protein O yes N/A 0.205 0.150 0.487 2e-28
P53601 770 Amyloid beta A4 protein O N/A N/A 0.205 0.150 0.487 2e-28
P05067 770 Amyloid beta A4 protein O no N/A 0.205 0.150 0.487 2e-28
P79307 770 Amyloid beta A4 protein O yes N/A 0.205 0.150 0.487 7e-28
>sp|P14599|A4_DROME Beta-amyloid-like protein OS=Drosophila melanogaster GN=Appl PE=1 SV=2 Back     alignment and function desciption
 Score =  315 bits (808), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 149/241 (61%), Positives = 185/241 (76%), Gaps = 4/241 (1%)

Query: 320 TTRVPTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSP 379
           +T  PT DPYFTHF+P  EH ++K + +RLEE HREKVT+VMKDWSDLEE+YQDMR   P
Sbjct: 390 STAQPTSDPYFTHFDPHYEHQSYKVSQKRLEESHREKVTRVMKDWSDLEEKYQDMRLADP 449

Query: 380 GVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALN 439
             A+ FKQ+MT RFQ +VQ+LEEEGNAEKHQL  MHQQRV A INQ K++AM CY +AL 
Sbjct: 450 KAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREAMTCYTQALT 509

Query: 440 DVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLAT----NLDFAVKEKPMTLEHLVDI 495
           +   N H V+KCLQKLLRALHKDR H +AHY+HLL +     L+ A  E+P TLE L+DI
Sbjct: 510 EQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPGGLEAAASERPRTLERLIDI 569

Query: 496 DHTINQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLLSLTREAEEAILDKYKAQ 555
           D  +NQSMTML+R+P L+ KI++LM DY+ ALRSKD+ PGS L ++ EAE  ILDKY+ +
Sbjct: 570 DRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSKDDIPGSSLGMSEEAEAGILDKYRVE 629

Query: 556 V 556
           +
Sbjct: 630 I 630
Probably corresponds to the protein encoded by the essential locus vnd, a gene required for embryonic nervous system development.
Drosophila melanogaster (taxid: 7227)
>sp|Q10651|A4_CAEEL Beta-amyloid-like protein OS=Caenorhabditis elegans GN=apl-1 PE=1 SV=2 Back     alignment and function description
>sp|O73683|A4_TETFL Amyloid beta A4 protein OS=Tetraodon fluviatilis GN=app PE=2 SV=1 Back     alignment and function description
>sp|O93279|A4_TAKRU Amyloid beta A4 protein OS=Takifugu rubripes GN=app PE=3 SV=1 Back     alignment and function description
>sp|P12023|A4_MOUSE Amyloid beta A4 protein OS=Mus musculus GN=App PE=1 SV=3 Back     alignment and function description
>sp|P08592|A4_RAT Amyloid beta A4 protein OS=Rattus norvegicus GN=App PE=1 SV=2 Back     alignment and function description
>sp|Q5IS80|A4_PANTR Amyloid beta A4 protein OS=Pan troglodytes GN=APP PE=2 SV=1 Back     alignment and function description
>sp|P53601|A4_MACFA Amyloid beta A4 protein OS=Macaca fascicularis GN=APP PE=2 SV=3 Back     alignment and function description
>sp|P05067|A4_HUMAN Amyloid beta A4 protein OS=Homo sapiens GN=APP PE=1 SV=3 Back     alignment and function description
>sp|P79307|A4_PIG Amyloid beta A4 protein OS=Sus scrofa GN=APP PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query564
322791034552 hypothetical protein SINV_08796 [Solenop 0.423 0.432 0.604 1e-86
157111458 756 hypothetical protein AaeL_AAEL005895 [Ae 0.445 0.332 0.617 2e-86
332028122653 Beta-amyloid-like protein [Acromyrmex ec 0.423 0.366 0.604 4e-86
307184607654 Beta-amyloid-like protein [Camponotus fl 0.423 0.365 0.604 1e-85
345493517 785 PREDICTED: beta-amyloid-like protein-lik 0.443 0.318 0.611 1e-85
194911940 894 GG12794 [Drosophila erecta] gi|190648080 0.420 0.265 0.630 8e-85
386763544 888 beta amyloid protein precursor-like, iso 0.420 0.266 0.630 8e-85
195394129 878 GJ19504 [Drosophila virilis] gi|19415020 0.420 0.269 0.630 1e-84
194768419 903 GF22097 [Drosophila ananassae] gi|190617 0.420 0.262 0.630 1e-84
347968558 871 AGAP002790-PA [Anopheles gambiae str. PE 0.411 0.266 0.633 1e-84
>gi|322791034|gb|EFZ15642.1| hypothetical protein SINV_08796 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 156/258 (60%), Positives = 196/258 (75%)

Query: 305 STTTPTSTATTKSHATTRVPTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDW 364
           +T  P   +T+    +    TPDPY THF+P+ EH ++K+A  RLEE+H+EKVTKVMKDW
Sbjct: 135 ATAMPLPISTSTQQPSQPQGTPDPYLTHFDPRSEHQSYKQAQMRLEEVHKEKVTKVMKDW 194

Query: 365 SDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARIN 424
           SDLEERYQD+R+  P  A+ FK+ MT RFQ+TV +LEE G AEKHQL  MHQQRV   + 
Sbjct: 195 SDLEERYQDIRAHDPVAADAFKRWMTARFQETVAALEESGAAEKHQLSAMHQQRVQEAVK 254

Query: 425 QHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKE 484
           Q  ++AM+CY  ALN+   N H++QKCLQKLLRALHKDRHHTIAHYKHLL ++L+ A +E
Sbjct: 255 QRNEEAMSCYTAALNEAPPNMHRIQKCLQKLLRALHKDRHHTIAHYKHLLDSSLEQAQRE 314

Query: 485 KPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLLSLTREA 544
           KP TLEHL +ID   NQS+ ML+R+P L+ KI  LM DY+ ALRSKDETPG LL++TREA
Sbjct: 315 KPATLEHLAEIDRITNQSLLMLERYPDLSAKIGRLMDDYVLALRSKDETPGLLLAMTREA 374

Query: 545 EEAILDKYKAQVIAMQED 562
           E AILDKY+A V + Q++
Sbjct: 375 EAAILDKYQADVASKQQE 392

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157111458|ref|XP_001651573.1| hypothetical protein AaeL_AAEL005895 [Aedes aegypti] gi|108878342|gb|EAT42567.1| AAEL005895-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|332028122|gb|EGI68173.1| Beta-amyloid-like protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307184607|gb|EFN70945.1| Beta-amyloid-like protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345493517|ref|XP_001601635.2| PREDICTED: beta-amyloid-like protein-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|194911940|ref|XP_001982404.1| GG12794 [Drosophila erecta] gi|190648080|gb|EDV45373.1| GG12794 [Drosophila erecta] Back     alignment and taxonomy information
>gi|386763544|ref|NP_001245452.1| beta amyloid protein precursor-like, isoform F [Drosophila melanogaster] gi|383293121|gb|AFH07168.1| beta amyloid protein precursor-like, isoform F [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195394129|ref|XP_002055698.1| GJ19504 [Drosophila virilis] gi|194150208|gb|EDW65899.1| GJ19504 [Drosophila virilis] Back     alignment and taxonomy information
>gi|194768419|ref|XP_001966309.1| GF22097 [Drosophila ananassae] gi|190617073|gb|EDV32597.1| GF22097 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|347968558|ref|XP_312126.5| AGAP002790-PA [Anopheles gambiae str. PEST] gi|333467949|gb|EAA07868.5| AGAP002790-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query564
FB|FBgn0000108 887 Appl "beta amyloid protein pre 0.413 0.262 0.624 1.5e-123
WB|WBGene00000149 686 apl-1 [Caenorhabditis elegans 0.361 0.297 0.402 4.1e-64
UNIPROTKB|Q6P6Q5733 App "App protein" [Rattus norv 0.205 0.158 0.495 4.2e-53
MGI|MGI:88059 770 App "amyloid beta (A4) precurs 0.205 0.150 0.495 5.3e-53
RGD|2139 770 App "amyloid beta (A4) precurs 0.205 0.150 0.495 5.3e-53
ZFIN|ZDB-GENE-061009-28 764 aplp2 "amyloid beta (A4) precu 0.352 0.260 0.339 8.1e-53
ZFIN|ZDB-GENE-020220-1 751 appb "amyloid beta (A4) precur 0.207 0.155 0.5 9e-53
UNIPROTKB|Q6NRR1 749 app "App protein" [Xenopus lae 0.212 0.160 0.508 2.3e-52
UNIPROTKB|E9PEV0660 APP "Gamma-secretase C-termina 0.205 0.175 0.487 2.9e-52
UNIPROTKB|E9PG40 714 APP "Gamma-secretase C-termina 0.205 0.162 0.487 4.5e-52
FB|FBgn0000108 Appl "beta amyloid protein precursor-like" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 794 (284.6 bits), Expect = 1.5e-123, Sum P(2) = 1.5e-123
 Identities = 148/237 (62%), Positives = 183/237 (77%)

Query:   324 PTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAE 383
             PT DPYFTHF+P  EH ++K + +RLEE HREKVT+VMKDWSDLEE+YQDMR   P  A+
Sbjct:   394 PTSDPYFTHFDPHYEHQSYKVSQKRLEESHREKVTRVMKDWSDLEEKYQDMRLADPKAAQ 453

Query:   384 DFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSL 443
              FKQ+MT RFQ +VQ+LEEEGNAEKHQL  MHQQRV A INQ K++AM CY +AL +   
Sbjct:   454 SFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREAMTCYTQALTEQPP 513

Query:   444 NTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATN----LDFAVKEKPMTLEHLVDIDHTI 499
             N H V+KCLQKLLRALHKDR H +AHY+HLL +     L+ A  E+P TLE L+DID  +
Sbjct:   514 NAHHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPGGLEAAASERPRTLERLIDIDRAV 573

Query:   500 NQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLLSLTREAEEAILDKYKAQV 556
             NQSMTML+R+P L+ KI++LM DY+ ALRSKD+ PGS L ++ EAE  ILDKY+ ++
Sbjct:   574 NQSMTMLKRYPELSAKIAQLMNDYILALRSKDDIPGSSLGMSEEAEAGILDKYRVEI 630
GO:0005886 "plasma membrane" evidence=NAS;IDA
GO:0005576 "extracellular region" evidence=IDA
GO:0007399 "nervous system development" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0046914 "transition metal ion binding" evidence=IEA
GO:0008201 "heparin binding" evidence=IEA
GO:0007422 "peripheral nervous system development" evidence=IMP
GO:0048812 "neuron projection morphogenesis" evidence=IMP
GO:0048678 "response to axon injury" evidence=IMP
GO:0050808 "synapse organization" evidence=IMP
GO:0007616 "long-term memory" evidence=IDA
GO:1901215 "negative regulation of neuron death" evidence=IMP
WB|WBGene00000149 apl-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P6Q5 App "App protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:88059 App "amyloid beta (A4) precursor protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2139 App "amyloid beta (A4) precursor protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061009-28 aplp2 "amyloid beta (A4) precursor-like protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020220-1 appb "amyloid beta (A4) precursor protein b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NRR1 app "App protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E9PEV0 APP "Gamma-secretase C-terminal fragment 59" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PG40 APP "Gamma-secretase C-terminal fragment 59" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P14599A4_DROMENo assigned EC number0.61820.42020.2671yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query564
pfam12925193 pfam12925, APP_E2, E2 domain of amyloid precursor 8e-64
smart00006165 smart00006, A4_EXTRA, amyloid A4 8e-56
pfam1292457 pfam12924, APP_Cu_bd, Copper-binding of amyloid pr 1e-28
pfam02177102 pfam02177, APP_N, Amyloid A4 N-terminal heparin-bi 9e-27
pfam1051553 pfam10515, APP_amyloid, beta-amyloid precursor pro 6e-19
pfam03938157 pfam03938, OmpH, Outer membrane protein (OmpH-like 0.002
>gnl|CDD|205150 pfam12925, APP_E2, E2 domain of amyloid precursor protein Back     alignment and domain information 
 Score =  206 bits (527), Expect = 8e-64
 Identities = 83/203 (40%), Positives = 129/203 (63%), Gaps = 12/203 (5%)

Query: 305 STTTPTSTATTKSHATTRVPTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDW 364
            T +PTS A             DPYF+  +  +EH  +KEA +RLEE HRE++T+VMK+W
Sbjct: 3   PTPSPTSDAV------------DPYFSEPKEDNEHERYKEAKKRLEEKHRERMTQVMKEW 50

Query: 365 SDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARIN 424
            + E +Y+++    P  A+  ++++T RFQ+TVQ+LE+E  AE+ QL+  HQQRV A +N
Sbjct: 51  EEAESQYKNLPKADPKAAQLMRKELTERFQETVQTLEQEAAAERQQLVETHQQRVEAHLN 110

Query: 425 QHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKE 484
           + ++ A+  Y+ AL     N HK+ K L++ +RA  KDR HT+ H++H+  T+ + A + 
Sbjct: 111 ERRRAALENYLRALQAEPPNPHKILKALKRYIRAEQKDRQHTLRHFQHVRKTDPEKAAQM 170

Query: 485 KPMTLEHLVDIDHTINQSMTMLQ 507
           +P  LEHL  ID  +NQS+T+L 
Sbjct: 171 RPQVLEHLRVIDERMNQSLTLLY 193

The E2 domain is the largest of the conserved domains of the amyloid precursor protein. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures.E 2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulfate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface. Length = 193
>gnl|CDD|128326 smart00006, A4_EXTRA, amyloid A4 Back     alignment and domain information
>gnl|CDD|193397 pfam12924, APP_Cu_bd, Copper-binding of amyloid precursor, CuBD Back     alignment and domain information
>gnl|CDD|216917 pfam02177, APP_N, Amyloid A4 N-terminal heparin-binding Back     alignment and domain information
>gnl|CDD|151071 pfam10515, APP_amyloid, beta-amyloid precursor protein C-terminus Back     alignment and domain information
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 564
KOG3540|consensus 615 100.0
PF12925193 APP_E2: E2 domain of amyloid precursor protein; In 100.0
smart00006165 A4_EXTRA amyloid A4. amyloid A4 precursor of Alzhe 100.0
PF1292458 APP_Cu_bd: Copper-binding of amyloid precursor, Cu 100.0
PF02177102 APP_N: Amyloid A4 N-terminal heparin-binding; Inte 99.96
PF1051552 APP_amyloid: beta-amyloid precursor protein C-term 99.59
KOG3540|consensus615 98.36
PF14643 473 DUF4455: Domain of unknown function (DUF4455) 92.8
COG4942 420 Membrane-bound metallopeptidase [Cell division and 82.99
KOG1029|consensus 1118 82.96
PF14643 473 DUF4455: Domain of unknown function (DUF4455) 80.09
>KOG3540|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.8e-141  Score=1105.74  Aligned_cols=365  Identities=38%  Similarity=0.674  Sum_probs=316.1

Q ss_pred             CCCCCccccccccCcccccccccccCCCCCC-CCceeeeeeccCCCcCCCccccCCccccccccCcccccchhhhHHhHH
Q psy5197           1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVFDHIHNQSKCWEYERWNQTAA   79 (564)
Q Consensus         1 vYP~lqITNVVEa~q~V~I~nWCk~g~~~Ck-h~h~V~PyRCLvGeFvSDaLLVPe~CkF~H~e~md~C~~~~~Wh~vAk   79 (564)
                      |||++|||||||++|+|+|+|||+.|+++|| +.|.|+|||||+|+|+|+|||||++|+|+|+++||+|++++|||++|+
T Consensus        78 aYPelqitnV~ea~qaVSiddwc~~grspck~~~h~Vrp~~Cl~gefvseallvp~kC~ffh~ermD~cEn~~hwh~ea~  157 (615)
T KOG3540|consen   78 AYPELQITNVVEAFQAVSIDDWCRTGRSPCKFCLHPVRPYRCLAGEFVSEALLVPEKCQFFHQERMDQCENNQHWHKEAM  157 (615)
T ss_pred             hChHHHHHHHHHhhccccHHHHhccCCCcccccCcccccceeecCcchhhhccCcccchhhhccccccccchHHHHHHHH
Confidence            7999999999999999999999999999999 559999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccccceecccccccCccceeeeeccCCCchhhHHHHhhhhhhhchhhHHHHHHHHHHHHHhhhCCCCCCCCCC
Q psy5197          80 QSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDKERERFLEKQRKEVHKHEREELREEKARVKAAAEGRTYEPTGPS  159 (564)
Q Consensus        80 eaC~~~~m~LhsygMLLPCGid~F~GVEfVCCP~~~~~~~~~~~~~~~~~~~~E~ee~~eek~~~E~~~~~~~~~~~~~~  159 (564)
                      ++|+++||+|||||||||||+|+|+|||||||| .+..+..+                                      
T Consensus       158 etC~tk~mil~~~gmLlPCg~D~F~GvEfVCCP-~~~~~~~~--------------------------------------  198 (615)
T KOG3540|consen  158 ETCSTKGMILHSYGMLLPCGLDMFRGVEFVCCP-NDQTDKVD--------------------------------------  198 (615)
T ss_pred             HHhccCCeeeecccceeccccccccCceEEeCC-CCCCCccc--------------------------------------
Confidence            999999999999999999999999999999999 43122100                                      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCcccccccccCCCCCCceeeeeehhhhhHHHHHHHHHHhhhhccC
Q psy5197         160 TPIPPGVDAHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSAR  239 (564)
Q Consensus       160 ~~~~~~~~~~~~~~~~~ed~~~~~~~~~~D~~~~e~~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~  239 (564)
                        +..+.+++.  +   ++.+++..   +|+-                                                
T Consensus       199 --~~~~eede~--d---d~d~~d~~---ede~------------------------------------------------  220 (615)
T KOG3540|consen  199 --VAKTEEDED--D---DDDYDDGY---EDEY------------------------------------------------  220 (615)
T ss_pred             --ccccCcccC--C---cccccccc---cccc------------------------------------------------
Confidence              000000000  0   00000000   0000                                                


Q ss_pred             CCCCcccccccccccccccCCCChhhhhhhhccccCCCCCCcccccccccCCccccCCCCCCCCCCCcCCCccccccccC
Q psy5197         240 SPQNLCNVFFYFQGFIEVDQAATPEERHVANMQINGYENPTYKYFEIKDYDSYENIVSPSSGPASSTTTPTSTATTKSHA  319 (564)
Q Consensus       240 ~p~~~~~~~~y~~G~~~~dq~~t~ee~~~~n~~~n~~Enp~Y~yfe~k~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (564)
                                             +|            |..+|        |..+                         |
T Consensus       221 -----------------------~e------------esDd~--------deEe-------------------------p  232 (615)
T KOG3540|consen  221 -----------------------SE------------ESDDE--------DEEE-------------------------P  232 (615)
T ss_pred             -----------------------cc------------ccccc--------cccC-------------------------C
Confidence                                   00            00000        0000                         0


Q ss_pred             CCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHH
Q psy5197         320 TTRVPTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQS  399 (564)
Q Consensus       320 ~t~~pt~D~Yfe~~~~~~EH~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~s  399 (564)
                          ...+|||......|||++||+||+|||+|||+||++|||||++||+|+|| ||||       ||+||||||+||+|
T Consensus       233 ----~sqePyf~v~n~TnEH~~F~kAkmrleekhr~rmd~VmkEW~~ae~qaKn-PKAe-------kqalnqhFQ~~v~s  300 (615)
T KOG3540|consen  233 ----SSQEPYFDVANFTNEHADFQKAKMRLEEKHRKRMDKVMKEWEEAETQAKN-PKAE-------KQALNQHFQKTVSS  300 (615)
T ss_pred             ----cccCCceehhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-chhh-------HHHHHHHHHHHHHH
Confidence                01224777777779999999999999999999999999999999999999 8888       99999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChh
Q psy5197         400 LEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLD  479 (564)
Q Consensus       400 LEeE~a~ErqqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPe  479 (564)
                      ||+|+++||||||+||++||+||||||||+||||||+|||++||+|||||++||||||||||||+|||||||||++|||+
T Consensus       301 LEee~a~erqqlvetH~~RV~AmlNdrrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpk  380 (615)
T KOG3540|consen  301 LEEEAARERQQLVETHEARVEAMLNDRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPK  380 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcchhHHHHHHHHHHHhhhhhhhhhhchhhHHHhHHHHHHHHHHhhccCCCCcccccCCH
Q psy5197         480 FAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLLSLTR  542 (564)
Q Consensus       480 kAaqmk~qvltHL~vIeeRmNQSLsLLyr~P~la~eI~~~idellq~~Rs~~d~p~~l~s~t~  542 (564)
                      ||+||||||||||||||+||||||+|||++|.|+++||++|++|||.+++.+|.+.+.++.++
T Consensus       381 kAaqmk~qV~thLrvIeeR~NqsLslL~~~P~vaqeirdev~ell~~e~~~~de~~an~~~~P  443 (615)
T KOG3540|consen  381 KAAQMKSQVMTHLRVIEERINQSLSLLYDVPAVAQEIRDEVDELLQVEDSHDDEFSANTTAKP  443 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHHHhcChHHHHHHHHHHHHHHhhhhcChhhhccccccCC
Confidence            999999999999999999999999999999999999999999999999999999988766655

>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ] Back     alignment and domain information
>smart00006 A4_EXTRA amyloid A4 Back     alignment and domain information
>PF12924 APP_Cu_bd: Copper-binding of amyloid precursor, CuBD; InterPro: IPR011178 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ] Back     alignment and domain information
>PF02177 APP_N: Amyloid A4 N-terminal heparin-binding; InterPro: IPR015849 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ] Back     alignment and domain information
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown Back     alignment and domain information
>KOG3540|consensus Back     alignment and domain information
>PF14643 DUF4455: Domain of unknown function (DUF4455) Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1029|consensus Back     alignment and domain information
>PF14643 DUF4455: Domain of unknown function (DUF4455) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query564
3k66_A239 X-Ray Crystal Structure Of The E2 Domain Of C. Eleg 7e-34
3ktm_A191 Structure Of The Heparin-Induced E1-Dimer Of The Am 9e-28
3nyl_A210 The X-Ray Structure Of An Antiparallel Dimer Of The 4e-22
3umh_A211 X-Ray Structure Of The E2 Domain Of The Human Amylo 4e-22
3nyj_A207 Crystal Structure Analysis Of App E2 Domain Length 4e-21
3pmr_A219 Crystal Structure Of E2 Domain Of Human Amyloid Pre 9e-19
3q7g_A214 Crystal Structure Of E2 Domain Of Human Amyloid Pre 1e-18
1owt_A66 Structure Of The Alzheimer's Disease Amyloid Precur 2e-12
2lp1_A122 The Solution Nmr Structure Of The Transmembrane C-T 6e-12
2fjz_A59 Structure Of The Alzheimer's Amyloid Precursor Prot 1e-08
1tkn_A110 Solution Structure Of Cappd, An Independently Folde 3e-08
1mwp_A96 N-Terminal Domain Of The Amyloid Precursor Protein 2e-07
2yt0_A176 Solution Structure Of The Chimera Of The C-Terminal 1e-06
2yt1_A185 Solution Structure Of The Chimera Of The C-Terminal 1e-06
2ysz_A185 Solution Structure Of The Chimera Of The C-Terminal 1e-06
3dxc_B35 Crystal Structure Of The Intracellular Domain Of Hu 2e-06
2roz_A32 Structure Of The C-Terminal Pid Domain Of Fe65l1 Co 2e-06
3dxe_B35 Crystal Structure Of The Intracellular Domain Of Hu 6e-06
3dxd_B35 Crystal Structure Of The Intracellular Domain Of Hu 8e-06
>pdb|3K66|A Chain A, X-Ray Crystal Structure Of The E2 Domain Of C. Elegans Apl-1 Length = 239 Back     alignment and structure 
Iteration: 1

 Score =  141 bits (356), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 113/190 (59%), Gaps = 2/190 (1%)
Query: 325 TPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAED 384
           + DPYF      +EH  FK+A  R++E HR+KV KVMK+W DLE RY + ++K P  AE 
Sbjct: 1   SQDPYFKIANWTNEHDDFKKAEMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEK 60
Query: 385 FKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALND--VS 442
           FK +M  RFQ+TV SLEEE    + ++  +H++RV A +N+ K+DA + Y +AL      
Sbjct: 61  FKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAMLNEKKRDATHDYRQALATHVNK 120
Query: 443 LNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQS 502
            N H V + L+  +RA  KDR HT+  Y+HLL  +   A   KP  +  L  ID  IN +
Sbjct: 121 PNKHSVLQSLKAYIRAEEKDRMHTLNRYRHLLKADSKEAAAYKPTVIHRLRYIDLRINGT 180
Query: 503 MTMLQRHPAL 512
           + ML+  P L
Sbjct: 181 LAMLRDFPDL 190
>pdb|3KTM|A Chain A, Structure Of The Heparin-Induced E1-Dimer Of The Amyloid Pre Protein (App) Length = 191 Back     alignment and structure
>pdb|3NYL|A Chain A, The X-Ray Structure Of An Antiparallel Dimer Of The Human Amyloid Precursor Protein E2 Domain Length = 210 Back     alignment and structure
>pdb|3UMH|A Chain A, X-Ray Structure Of The E2 Domain Of The Human Amyloid Precursor Protein (App) In Complex With Cadmium Length = 211 Back     alignment and structure
>pdb|3NYJ|A Chain A, Crystal Structure Analysis Of App E2 Domain Length = 207 Back     alignment and structure
>pdb|3PMR|A Chain A, Crystal Structure Of E2 Domain Of Human Amyloid Precursor-Like Protein 1 Length = 219 Back     alignment and structure
>pdb|3Q7G|A Chain A, Crystal Structure Of E2 Domain Of Human Amyloid Precursor-Like Protein 1 In Complex With Sos (Sucrose Octasulfate) Length = 214 Back     alignment and structure
>pdb|1OWT|A Chain A, Structure Of The Alzheimer's Disease Amyloid Precursor Protein Copper Binding Domain Length = 66 Back     alignment and structure
>pdb|2LP1|A Chain A, The Solution Nmr Structure Of The Transmembrane C-Terminal Domain Of The Amyloid Precursor Protein (C99) Length = 122 Back     alignment and structure
>pdb|2FJZ|A Chain A, Structure Of The Alzheimer's Amyloid Precursor Protein (App) Copper Binding Domain (Residues 133 To 189) In 'small Unit Cell' Form, Metal-Free Length = 59 Back     alignment and structure
>pdb|1TKN|A Chain A, Solution Structure Of Cappd, An Independently Folded Extracellular Domain Of Human Amyloid-Beta Precursor Protein Length = 110 Back     alignment and structure
>pdb|1MWP|A Chain A, N-Terminal Domain Of The Amyloid Precursor Protein Length = 96 Back     alignment and structure
>pdb|2YT0|A Chain A, Solution Structure Of The Chimera Of The C-Terminal Tail Peptide Of App And The C-Terminal Pid Domain Of Fe65l Length = 176 Back     alignment and structure
>pdb|2YT1|A Chain A, Solution Structure Of The Chimera Of The C-Terminal Tail Peptide Of App And The C-Terminal Pid Domain Of Fe65l Length = 185 Back     alignment and structure
>pdb|2YSZ|A Chain A, Solution Structure Of The Chimera Of The C-Terminal Pid Domain Of Fe65l And The C-Terminal Tail Peptide Of App Length = 185 Back     alignment and structure
>pdb|3DXC|B Chain B, Crystal Structure Of The Intracellular Domain Of Human App In Complex With Fe65-Ptb2 Length = 35 Back     alignment and structure
>pdb|2ROZ|A Chain A, Structure Of The C-Terminal Pid Domain Of Fe65l1 Complexed With The Cytoplasmic Tail Of App Reveals A Novel Peptide Binding Mode Length = 32 Back     alignment and structure
>pdb|3DXE|B Chain B, Crystal Structure Of The Intracellular Domain Of Human App (T668a Mutant) In Complex With Fe65-Ptb2 Length = 35 Back     alignment and structure
>pdb|3DXD|B Chain B, Crystal Structure Of The Intracellular Domain Of Human App (T668e Mutant) In Complex With Fe65-Ptb2 Length = 35 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query564
3k66_A239 Beta-amyloid-like protein; X-RAY amyloid precursor 8e-59
3ktm_A191 Amyloid beta A4 protein; protein structure, alzhei 5e-58
3umh_A211 Amyloid beta A4 protein; metal binding site, metal 9e-56
3pmr_A219 Amyloid-like protein 1; heparin binding, cell adhe 2e-53
2fma_A59 Amyloid beta A4 protein precursor; alpha-beta two- 5e-29
2lp1_A122 C99; alzheimer'S D membrane protein, transmembrane 6e-23
1mwp_A96 Amyloid A4 protein; heparin binding, sugar binding 1e-17
3dxe_B35 Amyloid beta A4 protein; alzheimer'S disease, APP, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
2yt0_A176 Amyloid beta A4 protein and amyloid beta A4 precur 2e-05
2ysz_A185 Amyloid beta A4 precursor protein-binding family B 1e-04
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A* Length = 239 Back     alignment and structure
 Score =  195 bits (495), Expect = 8e-59
 Identities = 82/210 (39%), Positives = 119/210 (56%), Gaps = 2/210 (0%)

Query: 325 TPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAED 384
           + DPYF      +EH  FK+A  R++E HR+KV KVMK+W DLE RY + ++K P  AE 
Sbjct: 1   SQDPYFKIANWTNEHDDFKKAEMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEK 60

Query: 385 FKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVS-- 442
           FK +M  RFQ+TV SLEEE    + ++  +H++RV A +N+ K+DA + Y +AL      
Sbjct: 61  FKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAMLNEKKRDATHDYRQALATHVNK 120

Query: 443 LNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQS 502
            N H V + L+  +RA  KDR HT+  Y+HLL  +   A   KP  +  L  ID  IN +
Sbjct: 121 PNKHSVLQSLKAYIRAEEKDRMHTLNRYRHLLKADSKEAAAYKPTVIHRLRYIDLRINGT 180

Query: 503 MTMLQRHPALAVKISELMQDYMQALRSKDE 532
           + ML+  P L   +  +   Y +  R +  
Sbjct: 181 LAMLRDFPDLEKYVRPIAVTYWKDYRDEVS 210
>3ktm_A Amyloid beta A4 protein; protein structure, alzheimer disease, amyloidosis, apoptosis, cell adhesion, copper, disease mutation, disulfi endocytosis; 2.70A {Homo sapiens} PDB: 1owt_A 2fkl_A Length = 191 Back     alignment and structure
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A Length = 211 Back     alignment and structure
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} PDB: 3q7l_A 3q7g_A 3qmk_A* Length = 219 Back     alignment and structure
>2fma_A Amyloid beta A4 protein precursor; alpha-beta two-layered sandwich, metal binding protein; 0.85A {Homo sapiens} PDB: 2fjz_A 2fk2_A 2fk3_A 2fk1_A Length = 59 Back     alignment and structure
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens} Length = 122 Back     alignment and structure
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1 Length = 96 Back     alignment and structure
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A Length = 35 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor protein-binding family B member...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} PDB: 2yt1_A Length = 176 Back     alignment and structure
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} Length = 185 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query564
3k66_A239 Beta-amyloid-like protein; X-RAY amyloid precursor 100.0
3pmr_A219 Amyloid-like protein 1; heparin binding, cell adhe 100.0
3umh_A211 Amyloid beta A4 protein; metal binding site, metal 100.0
3ktm_A191 Amyloid beta A4 protein; protein structure, alzhei 100.0
2fma_A59 Amyloid beta A4 protein precursor; alpha-beta two- 100.0
1mwp_A96 Amyloid A4 protein; heparin binding, sugar binding 99.9
2lp1_A122 C99; alzheimer'S D membrane protein, transmembrane 99.5
3dxe_B35 Amyloid beta A4 protein; alzheimer'S disease, APP, 99.01
2ysz_A185 Amyloid beta A4 precursor protein-binding family B 98.42
2yt0_A176 Amyloid beta A4 protein and amyloid beta A4 precur 97.76
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 87.46
2llm_A43 Amyloid beta A4 protein; alzheimer'S disease, prot 85.21
2ddi_A70 WAP, follistatin/kazal, immunoglobulin, kunitz and 84.84
1bf0_A60 Calcicludine; calcium channel blocker; NMR {Dendro 82.34
1kth_A58 Collagen alpha 3(VI) chain; anisotropic refinement 82.08
3aub_A58 BPTI, bovine pancreatic trypsin inhibitor; serine 81.64
3aug_A65 BPTI, bovine pancreatic trypsin inhibitor; serine 80.67
4dtg_K66 Tissue factor pathway inhibitor; antibody, blood c 80.65
1y62_A60 Conkunitzin-S1; alpha helix, beta sheet, 310 helix 80.49
1aap_A58 Alzheimer'S disease amyloid A4 protein; proteinase 80.48
1dtk_A57 Dendrotoxin K; presynaptic neurotoxin; NMR {Dendro 80.39
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-84  Score=634.40  Aligned_cols=213  Identities=39%  Similarity=0.614  Sum_probs=207.3

Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Q psy5197         326 PDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGN  405 (564)
Q Consensus       326 ~D~Yfe~~~~~~EH~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a  405 (564)
                      .|+||++|+++|||++|++||++||++||+||++|||||+|||+||+|||++|||+|++|||+||+|||++|+|||+|++
T Consensus         2 ~D~Yf~~~~~~~EH~~f~~Ak~rLe~~hr~km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a   81 (239)
T 3k66_A            2 QDPYFKIANWTNEHDDFKKAEMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHK   81 (239)
T ss_dssp             CCGGGGCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--ccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHHhh
Q psy5197         406 AEKHQLIVMHQQRVAARINQHKKDAMNCYIEAL--NDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVK  483 (564)
Q Consensus       406 ~ErqqLvetH~aRVeA~LNdrRR~Ale~Yl~AL--q~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekAaq  483 (564)
                      +||||||+||++||+|+||+|||.||+||++||  |++||++|+||+|||+||||++|||+|||+||+||+++||++|++
T Consensus        82 ~ErqqL~etH~qRV~a~LNerrr~Ale~y~~AL~~q~~pP~~~~Vl~aLk~yiRae~KDR~Htl~hy~Hl~~~dpe~A~~  161 (239)
T 3k66_A           82 RMRKEIEAVHEERVQAMLNEKKRDATHDYRQALATHVNKPNKHSVLQSLKAYIRAEEKDRMHTLNRYRHLLKADSKEAAA  161 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCHHHHHH
Confidence            999999999999999999999999999999999  899999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHhhhhhhhhhhchhhHHHhHHHHHHHHHHhhccCCCCccccc
Q psy5197         484 EKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLLS  539 (564)
Q Consensus       484 mk~qvltHL~vIeeRmNQSLsLLyr~P~la~eI~~~idellq~~Rs~~d~p~~l~s  539 (564)
                      ||++||+||++||+||||||+|||++|.|+.+|+++|++|++++| +..||...+.
T Consensus       162 ~k~~vl~hL~~Id~r~NqSL~lL~~~P~L~~~vrp~i~~~~~~~r-~~~~~~~~~~  216 (239)
T 3k66_A          162 YKPTVIHRLRYIDLRINGTLAMLRDFPDLEKYVRPIAVTYWKDYR-DEVSPDISVE  216 (239)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTTTTCHHHHTTTHHHHHHHHHHHH-HHHSCCCCSC
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHhHHHHHHHHHHh-cccCCccccc
Confidence            999999999999999999999999999999999999999999999 4556665444
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A* Back     alignment and structure
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A Back     alignment and structure
>3ktm_A Amyloid beta A4 protein; protein structure, alzheimer disease, amyloidosis, apoptosis, cell adhesion, copper, disease mutation, disulfi endocytosis; 2.70A {Homo sapiens} PDB: 1owt_A 2fkl_A Back     alignment and structure
>2fma_A Amyloid beta A4 protein precursor; alpha-beta two-layered sandwich, metal binding protein; 0.85A {Homo sapiens} PDB: 2fjz_A 2fk2_A 2fk3_A 2fk1_A Back     alignment and structure
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1 Back     alignment and structure
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens} Back     alignment and structure
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A Back     alignment and structure
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} Back     alignment and structure
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor protein-binding family B member...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} PDB: 2yt1_A Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A Back     alignment and structure
>2ddi_A WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1; kunitz domain, protein binding; NMR {Homo sapiens} PDB: 2ddj_A Back     alignment and structure
>1bf0_A Calcicludine; calcium channel blocker; NMR {Dendroaspis angusticeps} SCOP: g.8.1.1 Back     alignment and structure
>1kth_A Collagen alpha 3(VI) chain; anisotropic refinement, kunitz inhibitor, extracellular matrix, connective tissue, structural protein; 0.95A {Homo sapiens} SCOP: g.8.1.1 PDB: 1knt_A 1kun_A 2knt_A Back     alignment and structure
>3aub_A BPTI, bovine pancreatic trypsin inhibitor; serine protease inhibitor, hydrolase inhibitor; 1.00A {Bos taurus} PDB: 3aui_A 3auh_A 3ci7_A Back     alignment and structure
>3aug_A BPTI, bovine pancreatic trypsin inhibitor; serine protease inhibitor, inhibits serine protease, trypsin hydrolase inhibitor; 1.40A {Bos taurus} PDB: 3aue_A 3auc_A 3aud_A 1f7z_I 1f5r_I 3tgi_I 3tgj_I 3tgk_I Back     alignment and structure
>4dtg_K Tissue factor pathway inhibitor; antibody, blood coagulation, blood clotting inhib immune system complex; HET: MES PGE; 1.80A {Homo sapiens} PDB: 1tfx_C Back     alignment and structure
>1y62_A Conkunitzin-S1; alpha helix, beta sheet, 310 helix, kunitz fold, toxin; 2.45A {Synthetic} PDB: 1yl2_A 2ca7_A 2j6d_A Back     alignment and structure
>1aap_A Alzheimer'S disease amyloid A4 protein; proteinase inhibitor (trypsin); 1.50A {Homo sapiens} SCOP: g.8.1.1 PDB: 1taw_B 1brc_I 1zjd_B 3l3t_E 1ca0_D 3l33_E Back     alignment and structure
>1dtk_A Dendrotoxin K; presynaptic neurotoxin; NMR {Dendroaspis polylepis polylepis} SCOP: g.8.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 564
d1rw6a_192 a.47.4.1 (A:) CAPPD, an extracellular domain of am 6e-73
d2fkla164 d.230.3.1 (A:126-189) Amyloid beta a4 protein copp 4e-34
d1mwpa_96 d.170.2.1 (A:) N-terminal domain of the amyloid pr 6e-22
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: CAPPD, an extracellular domain of amyloid beta A4 protein
family: CAPPD, an extracellular domain of amyloid beta A4 protein
domain: CAPPD, an extracellular domain of amyloid beta A4 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  228 bits (584), Expect = 6e-73
 Identities = 61/196 (31%), Positives = 107/196 (54%), Gaps = 7/196 (3%)

Query: 327 DPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFK 386
           D Y      ++EH  F++A +RLE  HRE++++VM++W + E + +++            
Sbjct: 3   DKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADK------- 55

Query: 387 QKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTH 446
           + +   FQ+ V+SLE+E   E+ QL+  H  RV A +N  ++ A+  YI AL  V     
Sbjct: 56  KAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPR 115

Query: 447 KVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTML 506
            V   L+K +RA  KDR HT+ H++H+   +   A + +   + HL  I   +NQS+++L
Sbjct: 116 HVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLL 175

Query: 507 QRHPALAVKISELMQD 522
              PA+A +I + + +
Sbjct: 176 YNVPAVAEEIQDEVDE 191
>d2fkla1 d.230.3.1 (A:126-189) Amyloid beta a4 protein copper binding domain (domain 2) {Human (Homo sapiens) [TaxId: 9606]} Length = 64 Back     information, alignment and structure
>d1mwpa_ d.170.2.1 (A:) N-terminal domain of the amyloid precursor protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query564
d1rw6a_192 CAPPD, an extracellular domain of amyloid beta A4 100.0
d2fkla164 Amyloid beta a4 protein copper binding domain (dom 100.0
d1mwpa_96 N-terminal domain of the amyloid precursor protein 99.91
d1bika154 Bikunin from inter-alpha-inhibitor complex {Human 85.65
d1shpa_55 Trypsin inhibitor {Sea anemone (Stichodactyla heli 83.82
d1bika256 Bikunin from inter-alpha-inhibitor complex {Human 82.7
d1aapa_56 Alzheimer's amyloid B-protein precursor, APPI {Hum 82.22
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 81.62
d1dtxa_59 alpha-Dendrotoxin {Green mamba (Dendroaspis angust 80.34
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: CAPPD, an extracellular domain of amyloid beta A4 protein
family: CAPPD, an extracellular domain of amyloid beta A4 protein
domain: CAPPD, an extracellular domain of amyloid beta A4 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-79  Score=584.05  Aligned_cols=192  Identities=32%  Similarity=0.540  Sum_probs=188.8

Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhh
Q psy5197         325 TPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEG  404 (564)
Q Consensus       325 t~D~Yfe~~~~~~EH~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~  404 (564)
                      .+||||++|+++|||++|++||++||++||+||++|||||+|||+||+|||++|       +|+||+|||++|+|||+|+
T Consensus         1 ~vD~Yf~~~~~~~Eh~~f~~Ak~rLee~hr~k~~~VmkeW~eaE~~~~~l~k~d-------~K~~~~rFq~~v~~LE~e~   73 (192)
T d1rw6a_           1 AVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKAD-------KKAVIQHFQEKVESLEQEA   73 (192)
T ss_dssp             CCHHHHHTTSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------hHHHHHHHHHHHHHHhhhh
Confidence            379999999999999999999999999999999999999999999999998888       6789999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHHhhc
Q psy5197         405 NAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKE  484 (564)
Q Consensus       405 a~ErqqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekAaqm  484 (564)
                      ++|||||++||++||+|+||+|||.||+||++||+++||+|++||+|||+||||++|||+|||+||+||+++||++|++|
T Consensus        74 ~~erq~L~~~H~~rV~a~ln~rrr~a~~~y~~al~~~ppn~~~Vl~aLk~yira~~kDR~Htl~hf~Hl~~~dp~~A~~~  153 (192)
T d1rw6a_          74 ANERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQI  153 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCSSHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHcCCHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhhhhhhhhhhchhhHHHhHHHHHHH
Q psy5197         485 KPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDY  523 (564)
Q Consensus       485 k~qvltHL~vIeeRmNQSLsLLyr~P~la~eI~~~idel  523 (564)
                      |++|||||++||+||||||+|||++|+|+.+|+++|++|
T Consensus       154 r~~vl~hL~~Id~r~NqSL~lL~~~P~l~~~i~~~i~el  192 (192)
T d1rw6a_         154 RSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDEL  192 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSGGGSSCCTTTHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999985
>d2fkla1 d.230.3.1 (A:126-189) Amyloid beta a4 protein copper binding domain (domain 2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mwpa_ d.170.2.1 (A:) N-terminal domain of the amyloid precursor protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bika1 g.8.1.1 (A:25-78) Bikunin from inter-alpha-inhibitor complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1shpa_ g.8.1.1 (A:) Trypsin inhibitor {Sea anemone (Stichodactyla helianthus) [TaxId: 6123]} Back     information, alignment and structure
>d1bika2 g.8.1.1 (A:79-134) Bikunin from inter-alpha-inhibitor complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aapa_ g.8.1.1 (A:) Alzheimer's amyloid B-protein precursor, APPI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dtxa_ g.8.1.1 (A:) alpha-Dendrotoxin {Green mamba (Dendroaspis angusticeps) [TaxId: 8618]} Back     information, alignment and structure