Psyllid ID: psy5206

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MCSPKSASSNTPDQSSRRHSSKNRLTFLRTFLIFVRVCFDSFINIIFSFIYKDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSYIKQFRLGYDVWRYWVSKEKDDFNQLTIF
cccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHccccccccHHHHHHHHHccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccc
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHccccccccccccccEEEEHccccccccccHHHHHHHcccccccHHHHHHHHHcccEEEEccccHHHccccccccccccccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHHccccccccccHHcHHHHEEHccHcccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccHHHHHccccccEEEEEcHHHHcccccHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccEEEEEEEEEcccccccHHccc
mcspksassntpdqssrrhsskNRLTFLRTFLIFVRVCFDSFINIIFSFiykdeafplppvknkIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIAleedisdkpylgvpftskestackglsNTLGLLArkgkkadaDAYIVERVKTAggillgntnipellwsesrnmvygqsnnpynlcrttgassggeACLVSACGSvlglgtdlggsnripalycgvyghklttggiygrdgkegksmlaagpivkhaedllpyskclilpdklpaynfdksVDLAKLaggsmegmlpaynfdkpvdlAKLKVFyveepgdmkvspmSKDMIQAIRKCVNALkvvshsepedlsyIKQFRLGYDVWRYWVSkekddfnqltif
mcspksassntpdqssrrhssknrLTFLRTFLIFVRVCFDSFINIIFSFIYKDEAFPLPPVKNKIVLESATQIAkkirnknitsVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKialeedisdkpYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERvktaggillgnTNIPELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVvshsepedlsyiKQFRLGYDVWRYWVSkekddfnqltif
MCSPKSASSNTPDQSSRRHSSKNRLTFLRTFLIFVRVCfdsfiniifsfiYKDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSYIKQFRLGYDVWRYWVSKEKDDFNQLTIF
************************LTFLRTFLIFVRVCFDSFINIIFSFIYKDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEA*****KIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPG********KDMIQAIRKCVNALKVVSHSEPEDLSYIKQFRLGYDVWRYWVSKE**********
*************************TFLRTFLIFVRVCFDSFINIIFSFIYKD*******VKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSYIKQFRLGYDVWRYWVSKEKDD*NQLTIF
*********************KNRLTFLRTFLIFVRVCFDSFINIIFSFIYKDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSYIKQFRLGYDVWRYWVSKEKDDFNQLTIF
**********************NRLTFLRTFLIFVRVCFDSFINIIFSFIYKDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGASS********ACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSYIKQFRLGYDVWRYWVSKE**********
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCSPKSASSNTPDQSSRRHSSKNRLTFLRTFLIFVRVCFDSFINIIFSFIYKDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSYIKQFRLGYDVWRYWVSKEKDDFNQLTIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query407 2.2.26 [Sep-21-2011]
Q6DH69 532 Fatty-acid amide hydrolas yes N/A 0.798 0.610 0.381 6e-53
Q6GMR7 532 Fatty-acid amide hydrolas yes N/A 0.776 0.593 0.348 8e-53
Q05AM4 526 Fatty-acid amide hydrolas no N/A 0.776 0.600 0.355 3e-46
B1L1G9 485 Glutamyl-tRNA(Gln) amidot yes N/A 0.579 0.486 0.347 6e-29
C3KU97 485 Glutamyl-tRNA(Gln) amidot yes N/A 0.579 0.486 0.342 1e-28
C1FLD9 485 Glutamyl-tRNA(Gln) amidot yes N/A 0.579 0.486 0.342 1e-28
B1INF7 485 Glutamyl-tRNA(Gln) amidot yes N/A 0.579 0.486 0.342 6e-28
A5I6Z3 485 Glutamyl-tRNA(Gln) amidot yes N/A 0.579 0.486 0.342 6e-28
A7FYL3 485 Glutamyl-tRNA(Gln) amidot yes N/A 0.579 0.486 0.342 6e-28
A7GIK2 485 Glutamyl-tRNA(Gln) amidot yes N/A 0.579 0.486 0.342 1e-27
>sp|Q6DH69|FAH2A_DANRE Fatty-acid amide hydrolase 2-A OS=Danio rerio GN=faah2a PE=2 SV=1 Back     alignment and function desciption
 Score =  208 bits (529), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 200/362 (55%), Gaps = 37/362 (10%)

Query: 58  LPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEA 117
           LPP+ N ++L SA Q+A+KIR K +TSVEVVQA+I+RI++VNP +NAMV  R++ AL+EA
Sbjct: 39  LPPITNPLLLLSAMQLARKIRRKEVTSVEVVQAYIDRIQEVNPLINAMVKDRFSAALQEA 98

Query: 118 KAADQKIALE---EDISDK--PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIV 172
              D+ I  E   ED+ +   P LGVP T KE+ A +G+ N+ GLL R+   + ADA  V
Sbjct: 99  AQVDKLIEEETGGEDVLEDRLPLLGVPITVKEAFALQGMPNSTGLLTRRDLVSGADAPSV 158

Query: 173 ERVKTAGGILLGNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSV 231
             +K AG I LG TN  EL +W ES N +YG +NNPY+  R  G SSGGE  ++ A  SV
Sbjct: 159 ALLKRAGAIPLGVTNCSELCMWLESHNHLYGITNNPYDFERIVGGSSGGEGSILGAGSSV 218

Query: 232 LGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDGKEGKSMLAAGPIVKHAEDLL 286
           +G+G+D+GGS RIP  + G++GHK + G     G Y     +    L  GP+ ++AEDL+
Sbjct: 219 IGIGSDIGGSIRIPCFFNGIFGHKPSVGIVNNEGQYPPASGQQMGFLCTGPMCRYAEDLI 278

Query: 287 PYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYV-EEPGD 345
           P                     L+ + G + E +    +    VDL KL+ F V    G 
Sbjct: 279 PM--------------------LSIMGGPNAEKL----SLFTEVDLKKLRFFSVPHNGGS 314

Query: 346 MKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSYIKQFRLGYDVWRYWVSKEKDDFNQLT 405
             VSP+   ++ A +  V  L+     + ++L  I Q +  + +W   ++    D    T
Sbjct: 315 HLVSPVEPQLLHAQKMVVKRLEADLGVKVQEL-LIPQLKYSFQIWGTMMASPGKDGKPPT 373

Query: 406 IF 407
            F
Sbjct: 374 TF 375

Danio rerio (taxid: 7955)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 9
>sp|Q6GMR7|FAAH2_HUMAN Fatty-acid amide hydrolase 2 OS=Homo sapiens GN=FAAH2 PE=2 SV=1 Back     alignment and function description
>sp|Q05AM4|FAH2B_DANRE Fatty-acid amide hydrolase 2-B OS=Danio rerio GN=faah2b PE=2 SV=1 Back     alignment and function description
>sp|B1L1G9|GATA_CLOBM Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|C3KU97|GATA_CLOB6 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain 657 / Type Ba4) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|C1FLD9|GATA_CLOBJ Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Kyoto / Type A2) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B1INF7|GATA_CLOBK Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Okra / Type B1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A5I6Z3|GATA_CLOBH Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A7FYL3|GATA_CLOB1 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A7GIK2|GATA_CLOBL Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=gatA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
332376927 530 unknown [Dendroctonus ponderosae] 0.877 0.673 0.445 4e-86
91088991 537 PREDICTED: similar to CG5112 CG5112-PA [ 0.886 0.672 0.434 9e-85
193700076 552 PREDICTED: fatty-acid amide hydrolase 2- 0.886 0.653 0.436 3e-84
328722970 546 PREDICTED: fatty-acid amide hydrolase 2- 0.884 0.659 0.439 3e-84
242007160 520 amidotransferase subunit A, putative [Pe 0.862 0.675 0.434 9e-82
383858864506 PREDICTED: fatty-acid amide hydrolase 2- 0.847 0.681 0.412 4e-75
380025252 539 PREDICTED: fatty-acid amide hydrolase 2- 0.852 0.643 0.408 1e-74
328790282 510 PREDICTED: fatty-acid amide hydrolase 2- 0.828 0.660 0.412 4e-73
332023100 536 Fatty-acid amide hydrolase 2 [Acromyrmex 0.918 0.697 0.388 1e-72
350405899 544 PREDICTED: fatty-acid amide hydrolase 2- 0.855 0.639 0.398 4e-71
>gi|332376927|gb|AEE63603.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 175/393 (44%), Positives = 247/393 (62%), Gaps = 36/393 (9%)

Query: 21  SKNRLTFLRTFLIFVRVCFDSFINIIFSFIYKDEAFPLPPVKNKIVLESATQIAKKIRNK 80
           SK R    + FL  +R   D  I+ +F   Y  +   +P VKN++VLESAT +A+KI+ +
Sbjct: 10  SKARYYIFKLFLC-LRYYLDLLIDRLFGIYYDSKREYIPKVKNQLVLESATALARKIQRR 68

Query: 81  NITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIA----LEEDISDKPYL 136
            +TSV+VV+AFIERI+QVNP +NA+VD R+ +AL EA+  DQ IA     E D  DKP+L
Sbjct: 69  ELTSVQVVEAFIERIQQVNPIINAIVDNRFEDALSEARQIDQDIANGTIQEVDFQDKPFL 128

Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPEL-LWSE 195
           GVPFTSKESTA KGLS T GL  R+GKKA  DA+ +E +K +G ILLG +N+P+L LW E
Sbjct: 129 GVPFTSKESTAAKGLSWTFGLKKRQGKKASFDAHCIESMKKSGAILLGVSNVPQLNLWQE 188

Query: 196 SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHK 255
           + N V+G + NPYN  R  G SSGGEA +++ACGS LG+GTD+GGS RIPA  CGV+GHK
Sbjct: 189 TSNPVFGLTRNPYNTTRNVGGSSGGEAAILAACGSPLGVGTDIGGSARIPAFMCGVFGHK 248

Query: 256 L-----TTGGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLA 310
           +     +T G+  R G+E ++M+  GP+ +H +DLLP+ K                    
Sbjct: 249 ISNSIVSTKGLTYRTGEEEETMVCVGPLARHVDDLLPFIKL------------------- 289

Query: 311 KLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVS 370
            LAG + + +    N    V + KLKV+YV  P D  +SP  ++M   + K V  L+ + 
Sbjct: 290 -LAGSNADRL----NLGLQVPVKKLKVYYVTNPKDPLMSPFREEMHSVLLKAVRHLEGLC 344

Query: 371 HSEPEDLSYIKQFRLGYDVWRYWVSKEKDDFNQ 403
             +P++L + +Q +  Y +W+YW+S E  +F +
Sbjct: 345 LEKPQELVF-EQLQHQYKLWKYWMSLEMKNFRK 376

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91088991|ref|XP_967443.1| PREDICTED: similar to CG5112 CG5112-PA [Tribolium castaneum] gi|270011545|gb|EFA07993.1| hypothetical protein TcasGA2_TC005582 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|193700076|ref|XP_001946922.1| PREDICTED: fatty-acid amide hydrolase 2-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328722970|ref|XP_003247718.1| PREDICTED: fatty-acid amide hydrolase 2-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242007160|ref|XP_002424410.1| amidotransferase subunit A, putative [Pediculus humanus corporis] gi|212507810|gb|EEB11672.1| amidotransferase subunit A, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|383858864|ref|XP_003704919.1| PREDICTED: fatty-acid amide hydrolase 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380025252|ref|XP_003696391.1| PREDICTED: fatty-acid amide hydrolase 2-like [Apis florea] Back     alignment and taxonomy information
>gi|328790282|ref|XP_001122981.2| PREDICTED: fatty-acid amide hydrolase 2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|332023100|gb|EGI63361.1| Fatty-acid amide hydrolase 2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350405899|ref|XP_003487587.1| PREDICTED: fatty-acid amide hydrolase 2-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
FB|FBgn0039341 523 CG5112 [Drosophila melanogaste 0.606 0.472 0.459 4.2e-65
FB|FBgn0033717 529 CG8839 [Drosophila melanogaste 0.641 0.493 0.412 4.2e-57
ZFIN|ZDB-GENE-061027-358 526 faah2b "fatty acid amide hydro 0.616 0.477 0.438 2e-53
ZFIN|ZDB-GENE-040718-453 532 faah2a "fatty acid amide hydro 0.796 0.609 0.388 3.8e-53
FB|FBgn0038803 552 CG5191 [Drosophila melanogaste 0.614 0.452 0.411 9.8e-50
UNIPROTKB|Q6GMR7 532 FAAH2 "Fatty-acid amide hydrol 0.616 0.471 0.422 7.7e-48
FB|FBgn0037548 536 CG7900 [Drosophila melanogaste 0.633 0.481 0.394 1.3e-45
WB|WBGene00013164 535 Y53F4B.18 [Caenorhabditis eleg 0.658 0.500 0.407 1.9e-44
FB|FBgn0037547 530 CG7910 [Drosophila melanogaste 0.545 0.418 0.460 3.9e-44
TIGR_CMR|CBU_1474 483 CBU_1474 "glutamyl-tRNA(Gln) a 0.611 0.515 0.346 6.2e-33
FB|FBgn0039341 CG5112 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 570 (205.7 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
 Identities = 118/257 (45%), Positives = 173/257 (67%)

Query:    66 VLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIA 125
             + +SA ++A++IR +   S ++V+A+ ERIE VN  LNA+VD  + EAL++A+  D+K+ 
Sbjct:    49 ITKSAVELAQQIRERRQRSYDIVKAYCERIESVNRDLNAVVDGPFPEALDQAREIDRKLD 108

Query:   126 ----LEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGI 181
                  +ED+   P+LGVPF++K+STA  G  +TLGLLARK +++  DA  V  +K +G I
Sbjct:   109 EKEYSDEDLRRLPFLGVPFSTKDSTAVAGRLHTLGLLARKSERSTTDAECVRLMKESGAI 168

Query:   182 LLGNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGG 240
             ++  +N+PE+  W ESRNM+ G +NNPY+L R+ G SSGGEA L++AC +  GLGTD+GG
Sbjct:   169 IIATSNVPEVNKWIESRNMLIGCTNNPYDLRRSVGGSSGGEAALIAACCTGFGLGTDIGG 228

Query:   241 SNRIPALYCGVYGHKLTTGGIY--G---RDGKEGKSMLAAGPIVKHAEDLLPYSKCLILP 295
             S RIPA  CG++GHK T+G +   G   R GKE  +M+ AGP+ + A DLLP  + L+ P
Sbjct:   229 SIRIPAFNCGIFGHKPTSGAVNMAGCTFRTGKEKDTMVCAGPMSRSARDLLPMMQVLVEP 288

Query:   296 DKLPAYNFDKSVDLAKL 312
                     D+ VDL +L
Sbjct:   289 SLKAKLKLDQKVDLKRL 305
GO:0017064 "fatty acid amide hydrolase activity" evidence=ISS
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
FB|FBgn0033717 CG8839 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061027-358 faah2b "fatty acid amide hydrolase 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-453 faah2a "fatty acid amide hydrolase 2a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0038803 CG5191 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GMR7 FAAH2 "Fatty-acid amide hydrolase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0037548 CG7900 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00013164 Y53F4B.18 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0037547 CG7910 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1474 CBU_1474 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6DH69FAH2A_DANRE3, ., 5, ., 1, ., 9, 90.38120.79850.6109yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.99LOW CONFIDENCE prediction!
3rd Layer3.5.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
pfam01425 431 pfam01425, Amidase, Amidase 4e-59
COG0154 475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 5e-58
PRK06170 490 PRK06170, PRK06170, amidase; Provisional 3e-56
PRK07487 469 PRK07487, PRK07487, amidase; Provisional 2e-44
PRK07486 484 PRK07486, PRK07486, amidase; Provisional 2e-42
PRK07488 472 PRK07488, PRK07488, indole acetimide hydrolase; Va 8e-39
PRK12470 462 PRK12470, PRK12470, amidase; Provisional 3e-36
PRK00012 459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 1e-35
PRK06529 482 PRK06529, PRK06529, amidase; Provisional 2e-35
PRK09201 465 PRK09201, PRK09201, amidase; Provisional 3e-34
PRK06169 466 PRK06169, PRK06169, putative amidase; Provisional 4e-34
TIGR00132 460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 2e-33
PRK07042 464 PRK07042, PRK07042, amidase; Provisional 1e-32
TIGR02715 452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 1e-30
PRK06061 483 PRK06061, PRK06061, amidase; Provisional 4e-28
PRK07869 468 PRK07869, PRK07869, amidase; Provisional 4e-27
PRK08137 497 PRK08137, PRK08137, amidase; Provisional 5e-25
PRK06565 566 PRK06565, PRK06565, amidase; Validated 1e-22
PRK07235 502 PRK07235, PRK07235, amidase; Provisional 2e-17
PRK07056 454 PRK07056, PRK07056, amidase; Provisional 1e-16
PRK06102 452 PRK06102, PRK06102, hypothetical protein; Provisio 1e-15
PRK06707 536 PRK06707, PRK06707, amidase; Provisional 6e-15
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 7e-14
PRK06828 491 PRK06828, PRK06828, amidase; Provisional 1e-13
PRK08310395 PRK08310, PRK08310, amidase; Provisional 2e-13
PRK05962 424 PRK05962, PRK05962, amidase; Validated 2e-13
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 2e-12
PLN02722 422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 3e-11
PRK11910 615 PRK11910, PRK11910, amidase; Provisional 5e-10
PRK07139 439 PRK07139, PRK07139, amidase; Provisional 5e-05
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information 
 Score =  198 bits (505), Expect = 4e-59
 Identities = 99/305 (32%), Positives = 146/305 (47%), Gaps = 34/305 (11%)

Query: 86  EVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKES 145
           E+V+A+++R E  NP LNA V   + EAL +AKAAD++ A +E     P  GVP + K++
Sbjct: 1   ELVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRARKEKG---PLHGVPISLKDN 57

Query: 146 TACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPEL-LWSESRNMVYGQS 204
              KG+  T G  A +G     DA +VER++ AG ++LG TN+ E  + S + N  +G +
Sbjct: 58  IDVKGVPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENSAFGPT 117

Query: 205 NNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG----- 259
            NP++L RT G SSGG A  V+A    L +GTD GGS RIPA +CG+ G K T G     
Sbjct: 118 RNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVSRY 177

Query: 260 GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLAGGSMEG 319
           G+         S+   GP+ +  ED       +   D         S             
Sbjct: 178 GVVPY----SSSLDHVGPLARTVEDAALLLDVIAGYDP----ADPTSAPS---------- 219

Query: 320 MLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALK----VVSHSEPE 375
            +P +       L  L++    E     + P   ++ +A+RK   AL+     V   EP 
Sbjct: 220 PVPDFAEPLKKSLKGLRIGVPREDFYFSLDP---EVQRAVRKAAAALEALGHEVVEVEPP 276

Query: 376 DLSYI 380
            L + 
Sbjct: 277 SLKHA 281

Length = 431
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 407
PRK07487 469 amidase; Provisional 100.0
PRK06170 490 amidase; Provisional 100.0
COG0154 475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
PRK06169 466 putative amidase; Provisional 100.0
PRK07486 484 amidase; Provisional 100.0
PRK07042 464 amidase; Provisional 100.0
PRK00012 459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
TIGR00132 460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
TIGR02715 452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
PRK08137 497 amidase; Provisional 100.0
PRK09201 465 amidase; Provisional 100.0
PF01425 441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
PRK06102 452 hypothetical protein; Provisional 100.0
PRK07056 454 amidase; Provisional 100.0
PRK07488 472 indole acetimide hydrolase; Validated 100.0
PRK07869 468 amidase; Provisional 100.0
PRK12470 462 amidase; Provisional 100.0
PRK06529 482 amidase; Provisional 100.0
PRK06061 483 amidase; Provisional 100.0
PRK06828 491 amidase; Provisional 100.0
PRK11910 615 amidase; Provisional 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
PRK06565 566 amidase; Validated 100.0
PRK05962 424 amidase; Validated 100.0
PRK06707 536 amidase; Provisional 100.0
PRK07235 502 amidase; Provisional 100.0
KOG1212|consensus 560 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
PRK07139 439 amidase; Provisional 100.0
PRK08310 395 amidase; Provisional 100.0
KOG1211|consensus 506 100.0
PLN02722 422 indole-3-acetamide amidohydrolase 100.0
KOG1212|consensus 560 85.28
>PRK07487 amidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.9e-76  Score=612.29  Aligned_cols=304  Identities=28%  Similarity=0.388  Sum_probs=268.0

Q ss_pred             hhhhccHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCceEEecChHHHHHHHHHHhHHHHccCcCCCCCCCCcceeee
Q psy5206          64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSK  143 (407)
Q Consensus        64 ~l~~~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~n~~lNav~~~~~e~Al~~A~~~D~~~~~g~~l~~~PL~GVPiavK  143 (407)
                      +++.+++.+|+++|++|++|++||+++|++||+++|+.+||+++.++|+|+++|+++|+++++++.  .+||+||||+||
T Consensus         4 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~--~gpL~GvPi~vK   81 (469)
T PRK07487          4 ELWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDD--PGPLAGVPVTVK   81 (469)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCC--CCCcCCCEEEEe
Confidence            467789999999999999999999999999999999999999999999999999999999988876  499999999999


Q ss_pred             ccccCCCccCCcccccccCCCCCchHHHHHHHHHcCCeEEEecCCCCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q psy5206         144 ESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEA  222 (407)
Q Consensus       144 D~i~vkG~~tT~Gs~~~~~~~a~~DA~vV~rLr~AGAI~lgkTn~pE~~-~~~t~N~~~G~t~NP~d~~r~~GGSSgGsa  222 (407)
                      |+|+++|++||+||..++++++.+||++|++||+||||++||||||||+ +.++.|++||+|+||||++|++||||||||
T Consensus        82 D~~~v~G~~tt~Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsA  161 (469)
T PRK07487         82 VNVDQAGFATTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAA  161 (469)
T ss_pred             cccccCCCccCcchHHhcCCCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Confidence            9999999999999999999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             HHHhcCCcceeeeccCCCcccccccccCcceeecCCC-----CCCCCCC-CCCCCcceeCCccCChhhHHHHHHHhcCCC
Q psy5206         223 CLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDG-KEGKSMLAAGPIVKHAEDLLPYSKCLILPD  296 (407)
Q Consensus       223 aaVAag~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~~p~~~-~~~~~~~~~GpmaR~v~Dl~~ll~v~~g~d  296 (407)
                      |+||+|++++|+|||||||||+||+||||||||||+|     |+.+... ....++|++|||||+|+|+++++++|.|+|
T Consensus       162 aAVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a~~~~~l~g~d  241 (469)
T PRK07487        162 AAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLRLALAAMAAPD  241 (469)
T ss_pred             HHHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999     4442110 012468899999999999999999999998


Q ss_pred             CCCCCCCcchhhhhhhcCCCcCCCCCCCCCCCCCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEE
Q psy5206         297 KLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPED  376 (407)
Q Consensus       297 ~~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~v~~a~~~a~~~L~~~~G~~V~~  376 (407)
                      +.|++...                   .++.  .+.+++||||..+++   ...++++++++++++++.|+++ |++|++
T Consensus       242 ~~d~~~~~-------------------~~~~--~~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~  296 (469)
T PRK07487        242 PRDPWWVP-------------------APLE--GPPRPKRVALCVRPD---GLDVDPEVEAALRDAARRLEDA-GWTVEE  296 (469)
T ss_pred             CCCCccCC-------------------CCcc--CCCCCcEEEEECCCC---CCCCCHHHHHHHHHHHHHHHHC-CCEEEe
Confidence            76654321                   1111  235789999997643   3468999999999999999996 999998


Q ss_pred             cCCCCChHHHHHHHHHHH
Q psy5206         377 LSYIKQFRLGYDVWRYWV  394 (407)
Q Consensus       377 ~~~~p~~~~~~~~~~~~~  394 (407)
                      +.++|.+.+.+..|+..+
T Consensus       297 ~~~~~~~~~~~~~~~~~~  314 (469)
T PRK07487        297 VDDTPPLREAAELQERLW  314 (469)
T ss_pred             cCCCCchHHHHHHHHHHH
Confidence            624666666665554433

>PRK06170 amidase; Provisional Back     alignment and domain information
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06169 putative amidase; Provisional Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PRK08137 amidase; Provisional Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>PRK11910 amidase; Provisional Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>KOG1212|consensus Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>KOG1211|consensus Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information
>KOG1212|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
3a2p_A 493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 2e-20
3a2q_A 493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 5e-20
3kfu_E 471 Crystal Structure Of The Transamidosome Length = 47 3e-17
3h0l_A 478 Structure Of Trna-Dependent Amidotransferase Gatcab 1e-16
1m21_A 503 Crystal Structure Analysis Of The Peptide Amidase P 3e-16
2wap_A 543 3d-Crystal Structure Of Humanized-Rat Fatty Acid Am 6e-14
2vya_A 587 Crystal Structure Of Fatty Acid Amide Hydrolase Con 8e-14
2wj1_A 573 3d-Crystal Structure Of Humanized-Rat Fatty Acid Am 8e-14
4hbp_A 550 Crystal Structure Of Faah In Complex With Inhibitor 1e-13
1mt5_A 537 Crystal Structure Of Fatty Acid Amide Hydrolase Len 1e-13
4do3_A 571 Structure Of Faah With A Non-steroidal Anti-inflamm 2e-13
2dc0_A434 Crystal Structure Of Amidase Length = 434 2e-13
3qk5_A 587 Crystal Structure Of Fatty Acid Amide Hydrolase Wit 3e-13
2df4_A 485 Structure Of Trna-Dependent Amidotransferase Gatcab 2e-12
3al0_A 475 Crystal Structure Of The Glutamine Transamidosome F 5e-12
2gi3_A 476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 2e-10
4gyr_A 621 Granulibacter Bethesdensis Allophanate Hydrolase Ap 4e-07
3a1k_A 521 Crystal Structure Of Rhodococcus Sp. N771 Amidase L 6e-07
3a1i_A 521 Crystal Structure Of Rhodococcus Sp. N-771 Amidase 1e-06
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure 
Iteration: 1

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 110/200 (55%), Gaps = 15/200 (7%)
Query: 66  VLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIA 125
           + + AT  A+ +R+  I+  E+++A I  ++ VNP +NA++   + +A  E+        
Sbjct: 6   LWQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRES-------- 57
Query: 126 LEEDISDKPYLGVPFTSKESTAC-KGLSNTLGL--LARKGKKADADAYIVERVKTAGGIL 182
              +++  P+ GVP+  K+ T   +G  NT  +  +   G +AD DAY V+R++ AG +L
Sbjct: 58  ---ELASGPFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVL 114
Query: 183 LGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGS 241
           LG TN PE+     +    +G + NP+NL R+ G SSGG    V+A  S +  G D  GS
Sbjct: 115 LGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGS 174
Query: 242 NRIPALYCGVYGHKLTTGGI 261
            RIPA  CGV G K T G I
Sbjct: 175 VRIPASVCGVVGLKPTRGRI 194
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With The Drug-Like Urea Inhibitor Pf-3845 Length = 543 Back     alignment and structure
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated With The Drug-Like Inhibitor Pf-750 Length = 587 Back     alignment and structure
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With 7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One, An Alpha-Ketooxazole Length = 573 Back     alignment and structure
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor Length = 550 Back     alignment and structure
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Length = 537 Back     alignment and structure
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory Drug Length = 571 Back     alignment and structure
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small Molecule Inhibitor Length = 587 Back     alignment and structure
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 Back     alignment and structure
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 Back     alignment and structure
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
3ppm_A 573 Fatty-acid amide hydrolase 1; protein-inhibitor co 5e-87
3a2q_A 493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 4e-59
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 6e-46
3ip4_A 485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 2e-41
1m22_A 503 Peptide amidase, PAM; eleven-stranded beta sheet, 4e-40
3h0l_A 478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 2e-39
3kfu_E 471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 2e-39
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 3e-38
2gi3_A 476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 2e-34
3a1k_A 521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 2e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure
 Score =  274 bits (702), Expect = 5e-87
 Identities = 78/314 (24%), Positives = 138/314 (43%), Gaps = 38/314 (12%)

Query: 62  KNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAAD 121
              ++     Q+ +K+++  ++   V   ++ +  +VN   N +         + ++A  
Sbjct: 65  SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPR 124

Query: 122 QKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGI 181
           Q              GVP + KE  + KG  +TLGL   +G  +++D  +V+ +K  G +
Sbjct: 125 QG----------LLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAV 174

Query: 182 LLGNTNIPE-LLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGG 240
              +TN+P+ +   +  N ++GQ+ NP+   ++ G SSGGE  L+ + GS LGLGTD+GG
Sbjct: 175 PFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 234

Query: 241 SNRIPALYCGVYGHKLTTGGI--YGR----DGKEGKSMLAAGPIVKHAEDLLPYSKCLIL 294
           S R P+ +CG+ G K T   +   G      G+     L+ GP+ +  E L    K L+ 
Sbjct: 235 SIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTA-VQLSLGPMARDVESLALCLKALLC 293

Query: 295 PDKLPAYNFDKSVDLAKLAGGSMEGMLPA-YNFDKPVDLAKLKVFYVEEPGDMKVSPMSK 353
                 +  D +V              P  +  +       L+V Y E       SP   
Sbjct: 294 EH---LFTLDPTV-------------PPLPFREEVYRSSRPLRVGYYETDNYTMPSP--- 334

Query: 354 DMIQAIRKCVNALK 367
            M +A+ +    L+
Sbjct: 335 AMRRALIETKQRLE 348
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
3ip4_A 485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3h0l_A 478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
2dc0_A 434 Probable amidase; structural genomics, NPPSFA, nat 100.0
1m22_A 503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
3kfu_E 471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
3a2q_A 493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
3ppm_A 573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
2gi3_A 476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
1o9p_A 414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
3a1k_A 521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
Probab=100.00  E-value=1.2e-80  Score=648.48  Aligned_cols=306  Identities=24%  Similarity=0.357  Sum_probs=276.8

Q ss_pred             hhhhccHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCceEEecChHHHHHHHHHHhHHH-HccCcCCCCCCCCcceee
Q psy5206          64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKI-ALEEDISDKPYLGVPFTS  142 (407)
Q Consensus        64 ~l~~~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~n~~lNav~~~~~e~Al~~A~~~D~~~-~~g~~l~~~PL~GVPiav  142 (407)
                      ++..+|+.+|+++|++|++|++||+++|++||+++|+.+|||++.++|+|+++|+++|+++ ++|+.   +|||||||+|
T Consensus         2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~---gpL~GvPi~v   78 (485)
T 3ip4_A            2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD---GKLFGIPMGI   78 (485)
T ss_dssp             CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC---STTTTCEEEE
T ss_pred             CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC---CCcCCCEEEE
Confidence            4778999999999999999999999999999999999999999999999999999999998 66654   8999999999


Q ss_pred             eccccCCCccCCcccccccCCCCCchHHHHHHHHHcCCeEEEecCCCCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCCch
Q psy5206         143 KESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGE  221 (407)
Q Consensus       143 KD~i~vkG~~tT~Gs~~~~~~~a~~DA~vV~rLr~AGAI~lgkTn~pE~~-~~~t~N~~~G~t~NP~d~~r~~GGSSgGs  221 (407)
                      ||+|+++|++||+||..++++++.+||++|+|||+||||++||||||||+ +++|.|++||+|+||||++|+||||||||
T Consensus        79 KD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGs  158 (485)
T 3ip4_A           79 KDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGS  158 (485)
T ss_dssp             ETTBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHH
T ss_pred             EcCcccCCCccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHH
Confidence            99999999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             hHHHhcCCcceeeeccCCCcccccccccCcceeecCCC-----CCCCCCCCCCCCcceeCCccCChhhHHHHHHHhcCCC
Q psy5206         222 ACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPD  296 (407)
Q Consensus       222 aaaVAag~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~v~~g~d  296 (407)
                      |++||+|++++|+|||||||||+||+||||||||||+|     |++|.+    .++|++|||+|+|+|+++++++|+|+|
T Consensus       159 AaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~----~sld~~Gp~aRsv~D~a~~l~vl~g~d  234 (485)
T 3ip4_A          159 AAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFA----SSLDQIGPLTRNVKDNAIVLEAISGAD  234 (485)
T ss_dssp             HHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSC----TTTCCEEEEESSHHHHHHHHHHHBSCC
T ss_pred             HHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcc----cccceeccccCCHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999     888877    689999999999999999999999999


Q ss_pred             CCCCCCCcchhhhhhhcCCCcCCCCCCCCCCCCCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEE
Q psy5206         297 KLPAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPED  376 (407)
Q Consensus       297 ~~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~v~~a~~~a~~~L~~~~G~~V~~  376 (407)
                      +.|++..+.+.              +.+......+++++||||+.++   +...++|+++++++++++.|+++ |++|++
T Consensus       235 ~~d~~~~~~~~--------------~~~~~~~~~~~~~lrigv~~~~---~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~  296 (485)
T 3ip4_A          235 VNDSTSAPVDD--------------VDFTSEIGKDIKGLKVALPKEY---LGEGVADDVKEAVQNAVETLKSL-GAVVEE  296 (485)
T ss_dssp             TTCTTSCCCCC--------------CCCSTTTTCCCTTCEEEEEGGG---GSTTSCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred             cccccccccCc--------------cchhhhhccCccCcEEEEECCc---ccCCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence            87776543211              1111111225789999999764   23578999999999999999996 999999


Q ss_pred             cCCCCChHHHHHHHHHHHh
Q psy5206         377 LSYIKQFRLGYDVWRYWVS  395 (407)
Q Consensus       377 ~~~~p~~~~~~~~~~~~~~  395 (407)
                      + ++|.+.+..+.|...+.
T Consensus       297 ~-~~p~~~~~~~~~~~~~~  314 (485)
T 3ip4_A          297 V-SLPNTKFGIPSYYVIAS  314 (485)
T ss_dssp             E-CCTTGGGHHHHHHHHHH
T ss_pred             e-CCCcHHHHHHHHHHHHH
Confidence            9 99988777777765543
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 407
d2f2aa1 485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 4e-49
d2gi3a1 475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 1e-40
d1mt5a_ 537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 4e-33
d1m22a_ 490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 6e-31
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 1e-21
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  171 bits (434), Expect = 4e-49
 Identities = 83/330 (25%), Positives = 140/330 (42%), Gaps = 24/330 (7%)

Query: 65  IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKI 124
           I  ES   +   I++K I   +VV+   + IE+ +P + + +      A+++A+  D+  
Sbjct: 3   IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ 62

Query: 125 ALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLG 184
           A  +D  D    G+P   K++    GL  T      +G     ++ ++E++     +L+G
Sbjct: 63  A--KDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIG 120

Query: 185 NTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNR 243
             N+ E      +    + ++ NP++     G SSGG A  V+A    L LG+D GGS R
Sbjct: 121 KLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIR 180

Query: 244 IPALYCGVYGHKLTTGGIYGRDG--KEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAY 301
            PA YCGV G K T G +  R G      S+   GP+ ++ +D       ++L     A 
Sbjct: 181 QPAAYCGVVGMKPTYGRV-SRFGLVAFASSLDQIGPLTRNVKDN-----AIVLEAISGAD 234

Query: 302 NFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRK 361
             D +         S       +  +   D+  LKV   +E     V+    D+ +A++ 
Sbjct: 235 VNDST---------SAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVAD---DVKEAVQN 282

Query: 362 CVNALKVVSHS-EPEDLSYIKQFRLGYDVW 390
            V  LK +    E   L   K     Y V 
Sbjct: 283 AVETLKSLGAVVEEVSLPNTKFGIPSYYVI 312
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
d2f2aa1 485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d1mt5a_ 537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d1m22a_ 490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
d2gi3a1 475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1ocka_ 412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=3.9e-78  Score=622.41  Aligned_cols=304  Identities=24%  Similarity=0.362  Sum_probs=277.3

Q ss_pred             hhhccHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCceEEecChHHHHHHHHHHhHHHHccCcCCCCCCCCcceeeec
Q psy5206          65 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKE  144 (407)
Q Consensus        65 l~~~sa~~La~~ir~g~lt~~evv~a~i~Ri~~~n~~lNav~~~~~e~Al~~A~~~D~~~~~g~~l~~~PL~GVPiavKD  144 (407)
                      |.+.|+.||+++|++|++|++||+++|++||+++|+.+||+++.++|+|+++|+++|+++++++.  ++||+||||+|||
T Consensus         3 ~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~--~gpL~GiPi~vKD   80 (485)
T d2f2aa1           3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQM--DGKLFGIPMGIKD   80 (485)
T ss_dssp             STTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCC--CSTTTTCEEEEET
T ss_pred             CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHHHCCCC--CCCcCcCeEEEEc
Confidence            66789999999999999999999999999999999999999999999999999999999998876  4999999999999


Q ss_pred             cccCCCccCCcccccccCCCCCchHHHHHHHHHcCCeEEEecCCCCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q psy5206         145 STACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEAC  223 (407)
Q Consensus       145 ~i~vkG~~tT~Gs~~~~~~~a~~DA~vV~rLr~AGAI~lgkTn~pE~~-~~~t~N~~~G~t~NP~d~~r~~GGSSgGsaa  223 (407)
                      +|+|+|++||+|+..+++..+.+|+++|++||++|||++||||||||+ +.++.|..||+|+||||++|+|||||||||+
T Consensus        81 ~~~v~g~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~~~~GGSSgGsaa  160 (485)
T d2f2aa1          81 NIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAA  160 (485)
T ss_dssp             TBCBTTBCCCTTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHH
T ss_pred             ccccCCCccCCcChhhccCCccccccccccccccccccccccchhhhcccccccCccccCcCCCCCcccccCCccccchh
Confidence            999999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             HHhcCCcceeeeccCCCcccccccccCcceeecCCC-----CCCCCCCCCCCCcceeCCccCChhhHHHHHHHhcCCCCC
Q psy5206         224 LVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTG-----GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKL  298 (407)
Q Consensus       224 aVAag~~~~aiGsD~gGSIRiPAafcGv~G~KPT~G-----G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~v~~g~d~~  298 (407)
                      +||+|++++|+|||||||||+||+||||||||||+|     |++|.+    .++|++|||||+|+|+++++++|.|+++.
T Consensus       161 avA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~----~~~d~~Gpmar~v~D~~~ll~~~~g~~~~  236 (485)
T d2f2aa1         161 AVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFA----SSLDQIGPLTRNVKDNAIVLEAISGADVN  236 (485)
T ss_dssp             HHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSC----TTTCCEEEEESSHHHHHHHHHHHBSCBTT
T ss_pred             hHHhccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCc----ccCCeeccccCCHHHHHHHHhhccccccc
Confidence            999999999999999999999999999999999999     888877    78999999999999999999999999987


Q ss_pred             CCCCCcchhhhhhhcCCCcCCCCCCCCCCCCCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEcC
Q psy5206         299 PAYNFDKSVDLAKLAGGSMEGMLPAYNFDKPVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLS  378 (407)
Q Consensus       299 d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~v~~a~~~a~~~L~~~~G~~V~~~~  378 (407)
                      |++..+.+.              ..+......+++++||||+.+++   ...++++++++++++++.|+++ |++|+++ 
T Consensus       237 d~~~~~~~~--------------~~~~~~~~~~~~~lrig~~~~~~---~~~~~~~i~~a~~~a~~~L~~~-G~~v~ev-  297 (485)
T d2f2aa1         237 DSTSAPVDD--------------VDFTSEIGKDIKGLKVALPKEYL---GEGVADDVKEAVQNAVETLKSL-GAVVEEV-  297 (485)
T ss_dssp             BTTSCCCCC--------------CCCSTTTTCCCTTCEEEEEGGGG---STTSCHHHHHHHHHHHHHHHHT-TCEEEEE-
T ss_pred             ccccCCCCc--------------cchhhhhcCCccCCEEEEEcccc---cCcCCHHHHHHHHHHHHHHHHC-CCEEEEe-
Confidence            776553321              11111122368999999998753   4678999999999999999996 9999999 


Q ss_pred             CCCChHHHHHHHHHH
Q psy5206         379 YIKQFRLGYDVWRYW  393 (407)
Q Consensus       379 ~~p~~~~~~~~~~~~  393 (407)
                      ++|.+....+.|..+
T Consensus       298 ~lp~~~~~~~~~~~~  312 (485)
T d2f2aa1         298 SLPNTKFGIPSYYVI  312 (485)
T ss_dssp             CCTTGGGHHHHHHHH
T ss_pred             CCCchhhhHHHHHHH
Confidence            999877766655443
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure