Psyllid ID: psy5221

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------

MLSLLGINYFFYKIGLNIKILTISSIIFGFTGSIISLLLSKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQGVINTFIILISRIFSYILDCFLLNSYDDSNYNSNYNHKIYGLITTILQIFLGFGASIVVAWFSRNREFRADHGSAKLLGTPDPMISALRHLSNISIVNDLPKSIAILGINNNFKKKSFLKLFATHPSFEKRIAILSLLKLSLYFIRRSKMTVSAFAPFYRSTIGFDRLAQIFDNVRTEAQQSYPPYNIELVDENKYRITMAIAGFNRSDLEIETERDTLRITGRKQADTQQRNFLHRGIATRNFEHRFQLADHVHVVAAFFDQGILNIDLIREVPEALKPRKIYINTTKNTDRIE

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccEEEEEcHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccHHccccHHHHHHHHHHHHHccccccccccEEEcccccEEEEEEEcccccccccEEEEccEEEEEEEcccccccccEEHHHccccccccccccccEEEEcccccccccEEEEEEccccccccccEEEEcccccccccc

ccEEEEHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccEEEEcHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHEEEEEccccccccHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccHHHHHccccccEEEEEccccEEEEEEEEcccccccEEEccccHHEEcccccccHHHHHHHHHcHcccccHHHHHHHcHHHHHHHHHHcccEcHHHHHHcHHHccccEEEEEccccccccc

MLSLLGINYFFYKIGLNIKILTISSIIFGFTGSIISLLLSKKIAKWSMNLMviknpsnfteDWLLKTVNKISknanistpevaiyngeinafatgafknssLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQGVINTFIILISRIFSYILDCFLlnsyddsnynsnynhkIYGLITTILQIFLGFGASIVVAWFSRNrefradhgsakllgtpdpmiSALRHlsnisivndlpkSIAILGINNNFKKKSFLKLFATHPSFEKRIAILSLLKLSLYFIRRSkmtvsafapfyrstigfDRLAQIFDNVRteaqqsyppynielvdenKYRITMAIAgfnrsdleietERDTLRITGRKQADTQQRNFLHRGIATRNFEHRFQLADHVHVVAAFFDQGILNIDLIREvpealkprkiyinttkntdrie

MLSLLGINYFFYKIGLNIKILTISSIIFGFTGSIISLLLSKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQGVINTFIILISRIFSYILDCFLLNSYDDSNYNSNYNHKIYGLITTILQIFLGFGASIVVAWFSRNREFRADHGSAKLLGTPDPMISALRHLSNISIVNDLPKSIAILGINNNFKKKSFLKLFATHPSFEKRIAILSLLKLSLYFIRRSKMTVSAFAPFYRSTIGFDRLAQIFDNVRteaqqsyppynielvdeNKYRITMAiagfnrsdleietERDTLritgrkqadtqqrnFLHRGIATRNFEHRFQLADHVHVVAAFFDQGILNIDLIrevpealkprkiyinttkntdrie

MLSLLGINYFFYKIGLNIKILtissiifgftgsiisLLLSKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQGVINTFIILISRIFSYILDCFLLnsyddsnynsnynHKIYGLITTILQIFLGFGASIVVAWFSRNREFRADHGSAKLLGTPDPMISALRHLSNISIVNDLPKSIAILGInnnfkkksflklfATHPSFEKRIAILSLLKLSLYFIRRSKMTVSAFAPFYRSTIGFDRLAQIFDNVRTEAQQSYPPYNIELVDENKYRITMAIAGFNRSDLEIETERDTLRITGRKQADTQQRNFLHRGIATRNFEHRFQLADHVHVVAAFFDQGILNIDLIREVPEALKPRKIYINTTKNTDRIE

***LLGINYFFYKIGLNIKILTISSIIFGFTGSIISLLLSKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQGVINTFIILISRIFSYILDCFLLNSYDDSNYNSNYNHKIYGLITTILQIFLGFGASIVVAWFSRNREFRADHGSAKLLGTPDPMISALRHLSNISIVNDLPKSIAILGINNNFKKKSFLKLFATHPSFEKRIAILSLLKLSLYFIRRSKMTVSAFAPFYRSTIGFDRLAQIFDNVRTEAQQSYPPYNIELVDENKYRITMAIAGFNRSDLEIETERDTLRIT********QRNFLHRGIATRNFEHRFQLADHVHVVAAFFDQGILNIDLIREVPEALKPRKIYIN*********

MLSLLGINYFFYKIGLNIKILTISSIIFGFTGSIISLLLSKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQGVINTFIILISRIFSYILDCF*****************IYGLITTILQIFLGFGASIVVAWFSRNREFRADHGSAKLLGTPDPMISAL*******************GINNNFKKKSFLKLFATHPSFEKRIA*******************SAFAPFYRSTIGFDRLAQIF*NV******SYPPYNIELVDENKYRITMAIAGFNRSDLEIETERDT****************LHRGIATRNFEHRFQLADHVHVVAAFFDQGILNIDLIREVPEALKPRKI************

MLSLLGINYFFYKIGLNIKILTISSIIFGFTGSIISLLLSKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQGVINTFIILISRIFSYILDCFLLNSYD****NSNYNHKIYGLITTILQIFLGFGASIVVAWFSRNREFRADHGSAKLLGTPDPMISALRHLSNISIVNDLPKSIAILGINNNFKKKSFLKLFATHPSFEKRIAILSLLKLSL*******************TIGFDRLAQIFDNVRTEAQQSYPPYNIELVDENKYRITMAIAGFNRSDLEIETERDTLRITGRKQADTQQRNFLHRGIATRNFEHRFQLADHVHVVAAFFDQGILNIDLIREVPEALKPRKIYINTTKN*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		436	2.2.26 [Sep-21-2011]
A4G729		293	Protease HtpX homolog OS=	yes	N/A	0.616	0.918	0.514	2e-79
A6SXH1		290	Protease HtpX homolog OS=	yes	N/A	0.619	0.931	0.507	9e-78
A1VSW7		291	Protease HtpX homolog OS=	yes	N/A	0.605	0.907	0.507	5e-74
C5CML1		290	Protease HtpX homolog OS=	yes	N/A	0.605	0.910	0.503	2e-73
Q12EQ7		291	Protease HtpX homolog OS=	yes	N/A	0.605	0.907	0.507	1e-72
Q21ST3		291	Protease HtpX homolog OS=	yes	N/A	0.605	0.907	0.481	6e-72
A1WC76		292	Protease HtpX homolog OS=	yes	N/A	0.605	0.904	0.489	2e-71
B9MFV5		292	Protease HtpX homolog OS=	yes	N/A	0.605	0.904	0.489	7e-71
A1TV68		291	Protease HtpX homolog OS=	yes	N/A	0.605	0.907	0.485	2e-69
A1WH77		292	Protease HtpX homolog OS=	yes	N/A	0.598	0.893	0.472	8e-68

>sp\|A4G729\|HTPX_HERAR Protease HtpX homolog OS=Herminiimonas arsenicoxydans GN=htpX PE=3 SV=1	Back alignment and function desciption

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 142/276 (51%), Positives = 199/276 (72%), Gaps = 7/276 (2%)

Query: 1   MLSLLGINYFFYKIGLNIKILTISSIIFGFTGSIISLLLSKKIAKWSMNLMVIKNPSNFT 60
           +LSLLG++ F  + GLN+ +L + S++ GFTG+IISLL+SK +AKWS    VI  PS+ T
Sbjct: 21  VLSLLGVDRFISQAGLNLPMLLVFSLVVGFTGAIISLLISKPMAKWSTGARVITAPSSST 80

Query: 61  EDWLLKTVNKISKNANISTPEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKA 120
           E WL+ +V K+S+ A I+ PEVA+Y+GE NAFATGAFKNS+L+A+S  LL+SMTK E++A
Sbjct: 81  ELWLIDSVRKLSERAGIAMPEVAVYDGEPNAFATGAFKNSALVAVSTGLLQSMTKEEVEA 140

Query: 121 IIAHEISHISNGDMVTMLLIQGVINTFIILISRIFSYILDCFLLNSYDDSNYNSNYNHKI 180
           ++AHE++H++NGDMVTM L+QGV+NTF++ ++R+  Y +D  L  S  DSN N       
Sbjct: 141 VLAHEVAHVANGDMVTMTLVQGVVNTFVVFLARVVGYFVDRAL--SSRDSNNNGGQGIG- 197

Query: 181 YGLITTILQIFLGFGASIVVAWFSRNREFRADHGSAKLLGTPDPMISALRHLSNISIVND 240
           Y +   + Q+  G  AS++VAWFSR+REFRAD G+A LLG+P PM+ AL  L  I+  N 
Sbjct: 198 YTITVLVCQVVFGIAASVIVAWFSRHREFRADAGAATLLGSPQPMMKALARLGGIA-PNS 256

Query: 241 LPKSIAILGINNNFKKKSFLKLFATHPSFEKRIAIL 276
           LP+ +A +GIN+   K  F  LF++HP  E+RIA L
Sbjct: 257 LPEGMASMGIND---KPGFAALFSSHPPIEQRIAAL 289

Herminiimonas arsenicoxydans (taxid: 204773)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp\|A6SXH1\|HTPX_JANMA Protease HtpX homolog OS=Janthinobacterium sp. (strain Marseille) GN=htpX PE=3 SV=1	Back alignment and function description

>sp\|A1VSW7\|HTPX_POLNA Protease HtpX homolog OS=Polaromonas naphthalenivorans (strain CJ2) GN=htpX PE=3 SV=1	Back alignment and function description

>sp\|C5CML1\|HTPX_VARPS Protease HtpX homolog OS=Variovorax paradoxus (strain S110) GN=htpX PE=3 SV=1	Back alignment and function description

>sp\|Q12EQ7\|HTPX_POLSJ Protease HtpX homolog OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=htpX PE=3 SV=1	Back alignment and function description

>sp\|Q21ST3\|HTPX_RHOFD Protease HtpX homolog OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=htpX PE=3 SV=1	Back alignment and function description

>sp\|A1WC76\|HTPX_ACISJ Protease HtpX homolog OS=Acidovorax sp. (strain JS42) GN=htpX PE=3 SV=1	Back alignment and function description

>sp\|B9MFV5\|HTPX_ACIET Protease HtpX homolog OS=Acidovorax ebreus (strain TPSY) GN=htpX PE=3 SV=1	Back alignment and function description

>sp\|A1TV68\|HTPX_ACIAC Protease HtpX homolog OS=Acidovorax citrulli (strain AAC00-1) GN=htpX PE=3 SV=1	Back alignment and function description

>sp\|A1WH77\|HTPX_VEREI Protease HtpX homolog OS=Verminephrobacter eiseniae (strain EF01-2) GN=htpX PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		436
399021400		291	Zn-dependent protease with chaperone fun	0.612	0.917	0.532	7e-80
300312577		291	heat shock protein [Herbaspirillum serop	0.612	0.917	0.514	2e-79
409407063		291	heat shock protein [Herbaspirillum sp. G	0.612	0.917	0.514	2e-79
329904390		291	heat shock protease, integral membrane p	0.610	0.914	0.548	2e-78
398832529		291	Zn-dependent protease with chaperone fun	0.612	0.917	0.503	9e-78
134095364		293	heat shock protein HtpX [Herminiimonas a	0.616	0.918	0.514	1e-77
340786863		294	heat shock protease, integral membrane p	0.605	0.897	0.528	1e-76
152980711		290	heat shock protein HtpX [Janthinobacteri	0.619	0.931	0.507	6e-76
237745675		293	heat shock protein HtpX [Oxalobacter for	0.614	0.914	0.521	2e-73
71905935		292	heat shock protein HtpX [Dechloromonas a	0.614	0.917	0.509	4e-73

>gi\|399021400\|ref\|ZP_10723508.1\| Zn-dependent protease with chaperone function [Herbaspirillum sp. CF444] gi\|398091893\|gb\|EJL82317.1\| Zn-dependent protease with chaperone function [Herbaspirillum sp. CF444]	Back alignment and taxonomy information

 Score =  303 bits (777), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 147/276 (53%), Positives = 197/276 (71%), Gaps = 9/276 (3%)

Query: 1   MLSLLGINYFFYKIGLNIKILTISSIIFGFTGSIISLLLSKKIAKWSMNLMVIKNPSNFT 60
           +LSLLG++ F  + GLN+ +L + SI+ GFTGSIISLL+SK +AKWS    VI  P N T
Sbjct: 21  ILSLLGVDKFLTRAGLNLPMLLVFSIVVGFTGSIISLLMSKTMAKWSTGARVIDTPVNST 80

Query: 61  EDWLLKTVNKISKNANISTPEVAIYNGEINAFATGAFKNSSLIAISANLLESMTKLEIKA 120
           E WL+  V K+++ A I  PEVA+Y GE NAFATGAFK+S+L+A+S  LL+ MTK E++A
Sbjct: 81  EVWLVNIVGKLAQRAGIGMPEVAVYEGEPNAFATGAFKDSALVAVSTGLLQGMTKEEVEA 140

Query: 121 IIAHEISHISNGDMVTMLLIQGVINTFIILISRIFSYILDCFLLNSYDDSNYNSNYNHKI 180
           ++ HE++HI+NGDMVTM LIQGV+NTF++ +SR+  Y +D  L  + D+S     Y   +
Sbjct: 141 VLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGYFVDSALRRNNDNSGPGIGYMVTV 200

Query: 181 YGLITTILQIFLGFGASIVVAWFSRNREFRADHGSAKLLGTPDPMISALRHLSNISIVND 240
                 + QI  G GAS++VAWFSR+REFRAD GSAKLLG P PMI+AL  L  I  V+ 
Sbjct: 201 M-----VCQIVFGIGASMIVAWFSRHREFRADAGSAKLLGGPQPMINALARLGGIP-VSG 254

Query: 241 LPKSIAILGINNNFKKKSFLKLFATHPSFEKRIAIL 276
           LP+S+A +GIN+   K  F++LF+THP  E+RIA L
Sbjct: 255 LPESMAAMGIND---KPGFMELFSTHPPLEQRIAAL 287

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi\|300312577\|ref\|YP_003776669.1\| heat shock protein [Herbaspirillum seropedicae SmR1] gi\|300075362\|gb\|ADJ64761.1\| heat shock (with chaperone function) protein [Herbaspirillum seropedicae SmR1]	Back alignment and taxonomy information

>gi\|409407063\|ref\|ZP_11255514.1\| heat shock protein [Herbaspirillum sp. GW103] gi\|386432814\|gb\|EIJ45640.1\| heat shock protein [Herbaspirillum sp. GW103]	Back alignment and taxonomy information

>gi\|329904390\|ref\|ZP_08273784.1\| heat shock protease, integral membrane protein [Oxalobacteraceae bacterium IMCC9480] gi\|327547994\|gb\|EGF32733.1\| heat shock protease, integral membrane protein [Oxalobacteraceae bacterium IMCC9480]	Back alignment and taxonomy information

>gi\|398832529\|ref\|ZP_10590688.1\| Zn-dependent protease with chaperone function [Herbaspirillum sp. YR522] gi\|398223305\|gb\|EJN09655.1\| Zn-dependent protease with chaperone function [Herbaspirillum sp. YR522]	Back alignment and taxonomy information

>gi\|134095364\|ref\|YP_001100439.1\| heat shock protein HtpX [Herminiimonas arsenicoxydans] gi\|166224409\|sp\|A4G729.1\|HTPX_HERAR RecName: Full=Protease HtpX homolog gi\|133739267\|emb\|CAL62316.1\| Putative protease htpX (Heat shock protein htpX) [Herminiimonas arsenicoxydans]	Back alignment and taxonomy information

>gi\|340786863\|ref\|YP_004752328.1\| heat shock protease, integral membrane protein [Collimonas fungivorans Ter331] gi\|340552130\|gb\|AEK61505.1\| heat shock protease, integral membrane protein [Collimonas fungivorans Ter331]	Back alignment and taxonomy information

>gi\|152980711\|ref\|YP_001352968.1\| heat shock protein HtpX [Janthinobacterium sp. Marseille] gi\|166224410\|sp\|A6SXH1.1\|HTPX_JANMA RecName: Full=Protease HtpX homolog gi\|151280788\|gb\|ABR89198.1\| heat shock protein HtpX [Janthinobacterium sp. Marseille]	Back alignment and taxonomy information

>gi\|237745675\|ref\|ZP_04576155.1\| heat shock protein HtpX [Oxalobacter formigenes HOxBLS] gi\|229377026\|gb\|EEO27117.1\| heat shock protein HtpX [Oxalobacter formigenes HOxBLS]	Back alignment and taxonomy information

>gi\|71905935\|ref\|YP_283522.1\| heat shock protein HtpX [Dechloromonas aromatica RCB] gi\|71845556\|gb\|AAZ45052.1\| Heat shock protein, Metallo peptidase, MEROPS family M48B [Dechloromonas aromatica RCB]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		436
UNIPROTKB\|P23894		293	htpX [Escherichia coli K-12 (t	0.538	0.802	0.427	4e-42
UNIPROTKB\|Q8EDL5		287	htpX "Protease HtpX" [Shewanel	0.534	0.811	0.414	1.6e-40
TIGR_CMR\|SO_2728		287	SO_2728 "peptidase HtpX" [Shew	0.534	0.811	0.414	1.6e-40
UNIPROTKB\|Q9KSY9		287	htpX "Protease HtpX" [Vibrio c	0.525	0.797	0.414	2.6e-40
TIGR_CMR\|VC_1117		287	VC_1117 "heat shock protein Ht	0.525	0.797	0.414	2.6e-40
UNIPROTKB\|Q4K8U3		295	htpX "Protease HtpX" [Pseudomo	0.610	0.901	0.379	5.3e-40
UNIPROTKB\|Q8EET9		147	ibpA "16 kDa heat shock protei	0.311	0.925	0.547	1.2e-35
TIGR_CMR\|SO_2277		147	SO_2277 "16 kDa heat shock pro	0.311	0.925	0.547	1.2e-35
TIGR_CMR\|SPO_3484		156	SPO_3484 "heat shock protein,	0.323	0.903	0.531	1.5e-35
TIGR_CMR\|CPS_3580		156	CPS_3580 "chaperone protein Ib	0.302	0.846	0.546	6.5e-35

UNIPROTKB\|P23894 htpX [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 103/241 (42%), Positives = 148/241 (61%)

Query:    37 LLLSKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYNG-EINAFATG 95
             LL+SK +A  S+   VI+ P N  E WL+ TV   ++ A I+ P+VAIY+  +INAFATG
Sbjct:    51 LLMSKWMALRSVGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAPDINAFATG 110

Query:    96 AFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQGVINTFIILISRIF 155
             A +++SL+A+S  LL++M+  E +A+IAHEISHI+NGDMVTM LIQGV+NTF+I ISRI 
Sbjct:   111 ARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVNTFVIFISRIL 170

Query:   156 SYILDCFLLXXXXXXXXXXXXXHKIYGLITTILQIFLGFGASIVVAWFSRNREFRADHGS 215
             + +   F+                IY  + T+L++  G  ASI+  WFSR+REF AD GS
Sbjct:   171 AQLAAGFM-GGNRDEGEESNGNPLIYFAVATVLELVFGILASIITMWFSRHREFHADAGS 229

Query:   216 AKLLGTPDPMISALRHLSNISIVNDLPKSIAILGIXXXXXXXXXXXXXATHPSFEKRIAI 275
             AKL+G  + MI+AL+ L       +  ++ +++ +              THP  +KRI  
Sbjct:   230 AKLVGR-EKMIAALQRLKTSY---EPQEATSMMALCINGKSKSLSELFMTHPPLDKRIEA 285

Query:   276 L 276
             L
Sbjct:   286 L 286

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IEP

GO:0005886 "plasma membrane" evidence=IEA;IDA

GO:0004222 "metalloendopeptidase activity" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;IDA

GO:0006950 "response to stress" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;IDA

UNIPROTKB\|Q8EDL5 htpX "Protease HtpX" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_2728 SO_2728 "peptidase HtpX" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KSY9 htpX "Protease HtpX" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_1117 VC_1117 "heat shock protein HtpX" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4K8U3 htpX "Protease HtpX" [Pseudomonas protegens Pf-5 (taxid:220664)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8EET9 ibpA "16 kDa heat shock protein A IbpA" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_2277 SO_2277 "16 kDa heat shock protein A" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_3484 SPO_3484 "heat shock protein, Hsp20 family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_3580 CPS_3580 "chaperone protein IbpA" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7N3N4	HTPX_PHOLL	3, ., 4, ., 2, 4, ., -	0.4440	0.6100	0.9016	yes	N/A
A6SXH1	HTPX_JANMA	3, ., 4, ., 2, 4, ., -	0.5071	0.6192	0.9310	yes	N/A
B3ED81	HTPX_CHLL2	3, ., 4, ., 2, 4, ., -	0.4578	0.6055	0.9072	yes	N/A
A1TV68	HTPX_ACIAC	3, ., 4, ., 2, 4, ., -	0.4854	0.6055	0.9072	yes	N/A
B9MFV5	HTPX_ACIET	3, ., 4, ., 2, 4, ., -	0.4890	0.6055	0.9041	yes	N/A
B3EPQ3	HTPX_CHLPB	3, ., 4, ., 2, 4, ., -	0.4615	0.6055	0.8712	yes	N/A
A1WC76	HTPX_ACISJ	3, ., 4, ., 2, 4, ., -	0.4890	0.6055	0.9041	yes	N/A
B4S7I8	HTPX_PROA2	3, ., 4, ., 2, 4, ., -	0.4468	0.6055	0.9072	yes	N/A
Q7W7R8	HTPX_BORPA	3, ., 4, ., 2, 4, ., -	0.4558	0.6192	0.9215	yes	N/A
Q21ST3	HTPX_RHOFD	3, ., 4, ., 2, 4, ., -	0.4817	0.6055	0.9072	yes	N/A
C4ZZI6	HTPX_ECOBW	3, ., 4, ., 2, 4, ., -	0.4548	0.6077	0.9044	yes	N/A
B1XWS3	HTPX_LEPCP	3, ., 4, ., 2, 4, ., -	0.4618	0.6055	0.9072	yes	N/A
P59559	HTPX_BUCBP	3, ., 4, ., 2, 4, ., -	0.5291	0.5733	0.8591	yes	N/A
Q8D396	HTPX_WIGBR	3, ., 4, ., 2, 4, ., -	0.5116	0.5733	0.8503	yes	N/A
B1XH97	HTPX_ECODH	3, ., 4, ., 2, 4, ., -	0.4548	0.6077	0.9044	yes	N/A
A1VSW7	HTPX_POLNA	3, ., 4, ., 2, 4, ., -	0.5072	0.6055	0.9072	yes	N/A
Q8K9M1	HTPX_BUCAP	3, ., 4, ., 2, 4, ., -	0.5058	0.5756	0.8595	yes	N/A
Q3B410	HTPX_PELLD	3, ., 4, ., 2, 4, ., -	0.4725	0.6055	0.9072	yes	N/A
A4SEH5	HTPX_PROVI	3, ., 4, ., 2, 4, ., -	0.4725	0.6055	0.9072	yes	N/A
A9ITD6	HTPX_BORPD	3, ., 4, ., 2, 4, ., -	0.4416	0.6146	0.9146	yes	N/A
B4ETJ0	HTPX_PROMH	3, ., 4, ., 2, 4, ., -	0.4657	0.6055	0.9041	yes	N/A
Q7WL55	HTPX_BORBR	3, ., 4, ., 2, 4, ., -	0.4558	0.6192	0.9215	yes	N/A
Q2KZ03	HTPX_BORA1	3, ., 4, ., 2, 4, ., -	0.4487	0.6192	0.9215	yes	N/A
Q6D4G3	HTPX_ERWCT	3, ., 4, ., 2, 4, ., -	0.4584	0.6077	0.9044	yes	N/A
B7LPL6	HTPX_ESCF3	3, ., 4, ., 2, 4, ., -	0.4584	0.6077	0.9044	yes	N/A
C5CML1	HTPX_VARPS	3, ., 4, ., 2, 4, ., -	0.5036	0.6055	0.9103	yes	N/A
C6DFY1	HTPX_PECCP	3, ., 4, ., 2, 4, ., -	0.4548	0.6077	0.9044	yes	N/A
B4SCH3	HTPX_PELPB	3, ., 4, ., 2, 4, ., -	0.4725	0.6055	0.9072	yes	N/A
Q12EQ7	HTPX_POLSJ	3, ., 4, ., 2, 4, ., -	0.5072	0.6055	0.9072	yes	N/A
A4G729	HTPX_HERAR	3, ., 4, ., 2, 4, ., -	0.5144	0.6169	0.9180	yes	N/A
Q7VWH2	HTPX_BORPE	3, ., 4, ., 2, 4, ., -	0.4558	0.6192	0.9215	yes	N/A
A1BGS5	HTPX_CHLPD	3, ., 4, ., 2, 4, ., -	0.4652	0.6055	0.9072	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24	0.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		436
PRK05457		284	PRK05457, PRK05457, heat shock protein HtpX; Provi	1e-118
PRK10743		137	PRK10743, PRK10743, heat shock protein IbpA; Provi	3e-48
cd06470		90	cd06470, ACD_IbpA-B_like, Alpha-crystallin domain	3e-41
COG0501		302	COG0501, HtpX, Zn-dependent protease with chaperon	1e-40
PRK11597		142	PRK11597, PRK11597, heat shock chaperone IbpB; Pro	5e-40
COG0071		146	COG0071, IbpA, Molecular chaperone (small heat sho	2e-34
PRK03982		288	PRK03982, PRK03982, heat shock protein HtpX; Provi	9e-32
PRK04897		298	PRK04897, PRK04897, heat shock protein HtpX; Provi	4e-31
PRK02391		296	PRK02391, PRK02391, heat shock protein HtpX; Provi	1e-27
PRK02870		336	PRK02870, PRK02870, heat shock protein HtpX; Provi	2e-24
PRK03001		283	PRK03001, PRK03001, M48 family peptidase; Provisio	2e-24
pfam01435		223	pfam01435, Peptidase_M48, Peptidase family M48	2e-22
PRK01345		317	PRK01345, PRK01345, heat shock protein HtpX; Provi	6e-21
PRK03072		288	PRK03072, PRK03072, heat shock protein HtpX; Provi	4e-19
cd06464		88	cd06464, ACD_sHsps-like, Alpha-crystallin domain (	5e-16
PRK01265		324	PRK01265, PRK01265, heat shock protein HtpX; Provi	4e-14
pfam00011		101	pfam00011, HSP20, Hsp20/alpha crystallin family	4e-14
cd00298		80	cd00298, ACD_sHsps_p23-like, This domain family in	4e-09
pfam05569		299	pfam05569, Peptidase_M56, BlaR1 peptidase M56	1e-04
COG4783		484	COG4783, COG4783, Putative Zn-dependent protease,	0.003
COG4219		337	COG4219, MecR1, Antirepressor regulating drug resi	0.003
cd06526		83	cd06526, metazoan_ACD, Alpha-crystallin domain (AC	0.004

>gnl\|CDD\|235478 PRK05457, PRK05457, heat shock protein HtpX; Provisional	Back alignment and domain information

 Score =  345 bits (887), Expect = e-118
 Identities = 137/276 (49%), Positives = 183/276 (66%), Gaps = 18/276 (6%)

Query: 2   LSLLGINYFFYKIGLNIKILTISSIIFGFTGSIISLLLSKKIAKWSMNLMVIKNPSNFTE 61
           LSLLG+  +     LN+  L + + +FGF GS ISLL+SK +AK S    VI+ P N TE
Sbjct: 22  LSLLGVQSY-----LNLGGLLVFAAVFGFGGSFISLLMSKWMAKRSTGAEVIEQPRNETE 76

Query: 62  DWLLKTVNKISKNANISTPEVAIYNG-EINAFATGAFKNSSLIAISANLLESMTKLEIKA 120
            WL++TV + ++ A I  PEVAIY+  EINAFATGA KN+SL+A+S  LL++M++ E++A
Sbjct: 77  RWLVETVARQARQAGIGMPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNMSRDEVEA 136

Query: 121 IIAHEISHISNGDMVTMLLIQGVINTFIILISRIFSYILDCFLLNSYDDSNYNSNYNHKI 180
           ++AHEISHI+NGDMVTM LIQGV+NTF+I +SRI + I+D F+         N   N   
Sbjct: 137 VLAHEISHIANGDMVTMTLIQGVVNTFVIFLSRIIAQIVDRFVSG-------NEEGNGIG 189

Query: 181 YGLITTILQIFLGFGASIVVAWFSRNREFRADHGSAKLLGTPDPMISALRHLSNISIVND 240
           Y +++ +L+I  G  ASI+V WFSR+REFRAD G AKL G  + MI+AL+ L        
Sbjct: 190 YFIVSIVLEIVFGILASIIVMWFSRHREFRADAGGAKLAG-REKMIAALQRLKTSYE-PQ 247

Query: 241 LPKSIAILGINNNFKKKSFLKLFATHPSFEKRIAIL 276
           LP S+A  GIN    K    +LF +HP  EKRIA L
Sbjct: 248 LPGSMAAFGING---KSGLSELFMSHPPLEKRIAAL 280

Length = 284

>gnl\|CDD\|182691 PRK10743, PRK10743, heat shock protein IbpA; Provisional	Back alignment and domain information

>gnl\|CDD\|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins	Back alignment and domain information

>gnl\|CDD\|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|183223 PRK11597, PRK11597, heat shock chaperone IbpB; Provisional	Back alignment and domain information

>gnl\|CDD\|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|235186 PRK03982, PRK03982, heat shock protein HtpX; Provisional	Back alignment and domain information

>gnl\|CDD\|235318 PRK04897, PRK04897, heat shock protein HtpX; Provisional	Back alignment and domain information

>gnl\|CDD\|179418 PRK02391, PRK02391, heat shock protein HtpX; Provisional	Back alignment and domain information

>gnl\|CDD\|235081 PRK02870, PRK02870, heat shock protein HtpX; Provisional	Back alignment and domain information

>gnl\|CDD\|179524 PRK03001, PRK03001, M48 family peptidase; Provisional	Back alignment and domain information

>gnl\|CDD\|216503 pfam01435, Peptidase_M48, Peptidase family M48	Back alignment and domain information

>gnl\|CDD\|234944 PRK01345, PRK01345, heat shock protein HtpX; Provisional	Back alignment and domain information

>gnl\|CDD\|235102 PRK03072, PRK03072, heat shock protein HtpX; Provisional	Back alignment and domain information

>gnl\|CDD\|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	Back alignment and domain information

>gnl\|CDD\|234931 PRK01265, PRK01265, heat shock protein HtpX; Provisional	Back alignment and domain information

>gnl\|CDD\|215655 pfam00011, HSP20, Hsp20/alpha crystallin family	Back alignment and domain information

>gnl\|CDD\|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins	Back alignment and domain information

>gnl\|CDD\|218642 pfam05569, Peptidase_M56, BlaR1 peptidase M56	Back alignment and domain information

>gnl\|CDD\|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|226672 COG4219, MecR1, Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		436
PRK05457		284	heat shock protein HtpX; Provisional	100.0
PRK01265		324	heat shock protein HtpX; Provisional	100.0
PRK04897		298	heat shock protein HtpX; Provisional	100.0
PRK02870		336	heat shock protein HtpX; Provisional	100.0
PRK03072		288	heat shock protein HtpX; Provisional	100.0
PRK02391		296	heat shock protein HtpX; Provisional	100.0
PRK03982		288	heat shock protein HtpX; Provisional	100.0
PRK01345		317	heat shock protein HtpX; Provisional	100.0
PRK03001		283	M48 family peptidase; Provisional	100.0
PRK11597		142	heat shock chaperone IbpB; Provisional	100.0
PRK10743		137	heat shock protein IbpA; Provisional	100.0
COG0501		302	HtpX Zn-dependent protease with chaperone function	99.97
KOG2719\|consensus		428		99.97
COG0071		146	IbpA Molecular chaperone (small heat shock protein	99.95
PF01435		226	Peptidase_M48: Peptidase family M48 This is family	99.94
cd06470		90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	99.91
cd06472		92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	99.89
PF00011		102	HSP20: Hsp20/alpha crystallin family This prints e	99.87
cd06471		93	ACD_LpsHSP_like Group of bacterial proteins contai	99.87
cd06497		86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	99.86
cd06478		83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	99.84
cd06479		81	ACD_HspB7_like Alpha crystallin domain (ACD) found	99.84
cd06498		84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	99.84
COG4783		484	Putative Zn-dependent protease, contains TPR repea	99.83
cd06476		83	ACD_HspB2_like Alpha crystallin domain (ACD) found	99.82
cd06475		86	ACD_HspB1_like Alpha crystallin domain (ACD) found	99.82
cd06477		83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	99.81
cd06482		87	ACD_HspB10 Alpha crystallin domain (ACD) found in	99.81
cd06481		87	ACD_HspB9_like Alpha crystallin domain (ACD) found	99.8
cd06526		83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	99.77
cd06464		88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	99.74
KOG2661\|consensus		424		99.73
COG4784		479	Putative Zn-dependent protease [General function p	99.71
cd06480		91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	99.69
KOG0710\|consensus		196		99.6
KOG3591\|consensus		173		99.58
PF05569		299	Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0	99.47
cd00298		80	ACD_sHsps_p23-like This domain family includes the	99.29
cd06469		78	p23_DYX1C1_like p23_like domain found in proteins	98.93
COG4219		337	MecR1 Antirepressor regulating drug resistance, pr	98.88
PF05455		177	GvpH: GvpH; InterPro: IPR008633 This family consis	98.76
cd06463		84	p23_like Proteins containing this p23_like domain	98.5
cd06466		84	p23_CS_SGT1_like p23_like domain similar to the C-	98.12
PF04969		79	CS: CS domain; InterPro: IPR017447 The function of	97.67
PF04228		292	Zn_peptidase: Putative neutral zinc metallopeptida	97.58
PF06114		122	DUF955: Domain of unknown function (DUF955); Inter	97.37
cd06465		108	p23_hB-ind1_like p23_like domain found in human (h	97.27
PF10463		206	Peptidase_U49: Peptidase U49; InterPro: IPR019504	97.16
PF08190		328	PIH1: pre-RNA processing PIH1/Nop17	97.06
cd06489		84	p23_CS_hSgt1_like p23_like domain similar to the C	96.9
PRK09672		305	phage exclusion protein Lit; Provisional	96.74
cd06467		85	p23_NUDC_like p23_like domain of NUD (nuclear dist	96.63
cd06493		85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	96.35
PF01863		205	DUF45: Protein of unknown function DUF45; InterPro	96.34
cd06488		87	p23_melusin_like p23_like domain similar to the C-	96.3
PF04298		222	Zn_peptidase_2: Putative neutral zinc metallopepti	96.22
cd06494		93	p23_NUDCD2_like p23-like NUD (nuclear distribution	95.86
PRK04351		149	hypothetical protein; Provisional	95.86
cd06468		92	p23_CacyBP p23_like domain found in proteins simil	95.7
COG1451		223	Predicted metal-dependent hydrolase [General funct	95.61
COG2321		295	Predicted metalloprotease [General function predic	95.12
PF13699		79	DUF4157: Domain of unknown function (DUF4157)	94.92
PF10263		157	SprT-like: SprT-like family; InterPro: IPR006640 T	93.89
smart00731		146	SprT SprT homologues. Predicted to have roles in t	93.6
cd00237		106	p23 p23 binds heat shock protein (Hsp)90 and parti	93.58
PF10026		195	DUF2268: Predicted Zn-dependent protease (DUF2268)	93.29
PF13203		292	DUF2201_N: Putative metallopeptidase domain	92.83
PF04450		205	BSP: Peptidase of plants and bacteria; InterPro: I	92.56
COG2738		226	Predicted Zn-dependent protease [General function	91.36
cd06495		102	p23_NUDCD3_like p23-like NUD (nuclear distribution	90.41
COG2856		213	Predicted Zn peptidase [Amino acid transport and m	90.29
KOG1309\|consensus		196		90.27
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	90.26
COG4900		133	Predicted metallopeptidase [General function predi	90.14
cd06492		87	p23_mNUDC_like p23-like NUD (nuclear distribution)	89.3
cd06490		87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	88.96
PF02031		132	Peptidase_M7: Streptomyces extracellular neutral p	88.46
PRK04860		160	hypothetical protein; Provisional	88.36
COG3091		156	SprT Zn-dependent metalloprotease, SprT family [Ge	87.14
PF13349		166	DUF4097: Domain of unknown function (DUF4097)	84.22
PF12388		211	Peptidase_M57: Dual-action HEIGH metallo-peptidase	82.87
COG3590		654	PepO Predicted metalloendopeptidase [Posttranslati	80.48

>PRK05457 heat shock protein HtpX; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.2e-43  Score=337.90  Aligned_cols=251  Identities=51%  Similarity=0.781  Sum_probs=203.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCEEecCCCCcchhHHHHHHHHHHHhcCCCCCeEEEECC-CccEEEeC
Q psy5221          17 NIKILTISSIIFGFTGSIISLLLSKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYNG-EINAFATG   95 (436)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~L~~~l~~l~~~~g~~~p~v~v~~~-~~NA~~~G   95 (436)
                      ..++++++++++++++.++++++++++..+.++++++++|.++++++|++.++++|+++|+|.|++|++|+ .+|||++|
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~i~~~~~~~~~~L~~~v~~la~~~g~p~p~v~v~~~~~~NAfa~G  111 (284)
T PRK05457         32 NLGGLLVFAAVFGFGGSFISLLMSKWMAKRSTGAEVIEQPRNETERWLVETVARQARQAGIGMPEVAIYHSPEINAFATG  111 (284)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeECCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEeCCCceEEEec
Confidence            36677888899999999999999999999999999998788777778999999999999999999999999 99999999


Q ss_pred             CCCCccEEEEcHHHHhhcCHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCC
Q psy5221          96 AFKNSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQGVINTFIILISRIFSYILDCFLLNSYDDSNYNSN  175 (436)
Q Consensus        96 ~~~~~~~v~it~gLl~~l~~~El~aVLAHElgHi~~~h~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~  175 (436)
                      .++++++|++|+||++.+|++|++||+|||+||++++|+.++.++.++...+..++..++..+...+..   .+.. ..+
T Consensus       112 ~~~~~~~V~vt~gLl~~L~~~El~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~  187 (284)
T PRK05457        112 ASKNNSLVAVSTGLLQNMSRDEVEAVLAHEISHIANGDMVTMTLIQGVVNTFVIFLSRIIAQIVDRFVS---GNEE-GNG  187 (284)
T ss_pred             CCCCCeEEEeehHHhhhCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cCcc-ccc
Confidence            999899999999999999999999999999999999999988777666566655554444433322221   1111 111


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHhhhhhcCCchHHHHHHHHhhcccccCCChhhhhhhcccCccc
Q psy5221         176 YNHKIYGLITTILQIFLGFGASIVVAWFSRNREFRADHGSAKLLGTPDPMISALRHLSNISIVNDLPKSIAILGINNNFK  255 (436)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~~E~~AD~~a~~~~g~~~~l~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~  255 (436)
                         +..++...++..++.++..++.+++||.+||+||++|++++| |+++++||.|+...+. ...++..+++++.++  
T Consensus       188 ---~~~~~~~~l~~~~~~~~~~ll~~~~SR~rEy~AD~~Aa~ltg-p~~L~~AL~KL~~~~~-~~~~~~~~~~~i~~~--  260 (284)
T PRK05457        188 ---IGYFIVSIVLEIVFGILASIIVMWFSRHREFRADAGGAKLAG-REKMIAALQRLKTSYE-PQLPGSMAAFGINGK--  260 (284)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhC-HHHHHHHHHHHHhhCc-cCCChHHHHhhccCc--
Confidence               222222233334455667788899999999999999999988 7999999999998765 445666777777664  


Q ss_pred             chhhhhhhccCCChHHHHHHHHhc
Q psy5221         256 KKSFLKLFATHPSFEKRIAILSLL  279 (436)
Q Consensus       256 ~~~~~~~~~tHP~~~~RI~~L~~~  279 (436)
                       ..+..|++|||++.+||++|++.
T Consensus       261 -~~~~~lfsTHP~~~eRI~~L~~~  283 (284)
T PRK05457        261 -SGLSELFMSHPPLEKRIAALRSG  283 (284)
T ss_pred             -hhHHHHHcCCcCHHHHHHHHHhC
Confidence             24789999999999999999864

>PRK01265 heat shock protein HtpX; Provisional	Back alignment and domain information

>PRK04897 heat shock protein HtpX; Provisional	Back alignment and domain information

>PRK02870 heat shock protein HtpX; Provisional	Back alignment and domain information

>PRK03072 heat shock protein HtpX; Provisional	Back alignment and domain information

>PRK02391 heat shock protein HtpX; Provisional	Back alignment and domain information

>PRK03982 heat shock protein HtpX; Provisional	Back alignment and domain information

>PRK01345 heat shock protein HtpX; Provisional	Back alignment and domain information

>PRK03001 M48 family peptidase; Provisional	Back alignment and domain information

>PRK11597 heat shock chaperone IbpB; Provisional	Back alignment and domain information

>PRK10743 heat shock protein IbpA; Provisional	Back alignment and domain information

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2719\|consensus	Back alignment and domain information

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification	Back alignment and domain information

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins	Back alignment and domain information

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins	Back alignment and domain information

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry	Back alignment and domain information

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	Back alignment and domain information

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)	Back alignment and domain information

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20	Back alignment and domain information

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins	Back alignment and domain information

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)	Back alignment and domain information

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	Back alignment and domain information

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins	Back alignment and domain information

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins	Back alignment and domain information

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins	Back alignment and domain information

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins	Back alignment and domain information

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins	Back alignment and domain information

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)	Back alignment and domain information

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	Back alignment and domain information

>KOG2661\|consensus	Back alignment and domain information

>COG4784 Putative Zn-dependent protease [General function prediction only]	Back alignment and domain information

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21	Back alignment and domain information

>KOG0710\|consensus	Back alignment and domain information

>KOG3591\|consensus	Back alignment and domain information

>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins	Back alignment and domain information

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1	Back alignment and domain information

>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []	Back alignment and domain information

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1	Back alignment and domain information

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)	Back alignment and domain information

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown	Back alignment and domain information

>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases	Back alignment and domain information

>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function	Back alignment and domain information

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins	Back alignment and domain information

>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF08190 PIH1: pre-RNA processing PIH1/Nop17	Back alignment and domain information

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins	Back alignment and domain information

>PRK09672 phage exclusion protein Lit; Provisional	Back alignment and domain information

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins	Back alignment and domain information

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins	Back alignment and domain information

>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori	Back alignment and domain information

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins	Back alignment and domain information

>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases	Back alignment and domain information

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins	Back alignment and domain information

>PRK04351 hypothetical protein; Provisional	Back alignment and domain information

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)	Back alignment and domain information

>COG1451 Predicted metal-dependent hydrolase [General function prediction only]	Back alignment and domain information

>COG2321 Predicted metalloprotease [General function prediction only]	Back alignment and domain information

>PF13699 DUF4157: Domain of unknown function (DUF4157)	Back alignment and domain information

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)	Back alignment and domain information

>smart00731 SprT SprT homologues	Back alignment and domain information

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor	Back alignment and domain information

>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function	Back alignment and domain information

>PF13203 DUF2201_N: Putative metallopeptidase domain	Back alignment and domain information

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []	Back alignment and domain information

>COG2738 Predicted Zn-dependent protease [General function prediction only]	Back alignment and domain information

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins	Back alignment and domain information

>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1309\|consensus	Back alignment and domain information

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

>COG4900 Predicted metallopeptidase [General function prediction only]	Back alignment and domain information

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins	Back alignment and domain information

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins	Back alignment and domain information

>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PRK04860 hypothetical protein; Provisional	Back alignment and domain information

>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]	Back alignment and domain information

>PF13349 DUF4097: Domain of unknown function (DUF4097)	Back alignment and domain information

>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57	Back alignment and domain information

>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		436
3cqb_A		107	Crystal Structure Of Heat Shock Protein Htpx Domain		3e-22

>pdb|3CQB|A Chain A, Crystal Structure Of Heat Shock Protein Htpx Domain From Vibrio Parahaemolyticus Rimd 2210633 Length = 107

Back alignment and structure

Iteration: 1

Score = 102 bits (255), Expect = 3e-22, Method: Composition-based stats. Identities = 53/104 (50%), Positives = 73/104 (70%), Gaps = 1/104 (0%) Query: 40 SKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYN-GEINAFATGAFK 98 SK A S+ VI++P N TE WLL+TV + ++ A I P VAIY+ +INAFATGA + Sbjct: 4 SKGXALRSVGGXVIESPRNETEHWLLETVGRQAQQAGIGXPTVAIYDSADINAFATGAKR 63 Query: 99 NSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQG 142 + SL+A+S LL + T+ E +A++AHE+SHI+NGD VT L QG Sbjct: 64 DDSLVAVSTGLLHNXTRDEAEAVLAHEVSHIANGDXVTXTLXQG 107

PyMOL of 3cqb

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		436
3cqb_A		107	Probable protease HTPX homolog; heat shock protein	2e-40
4aw6_A		482	CAAX prenyl protease 1 homolog; hydrolase, M48 pep	2e-18
2wj5_A		101	Heat shock protein beta-6; chaperone, disulfide bo	1e-13
3q9p_A		85	Heat shock protein beta-1; alpha-crystallin domain	7e-13
3l1e_A		106	Alpha-crystallin A chain; lens transparency, polyd	2e-11
2klr_A		175	Alpha-crystallin B chain; protein, dimer, oligomer	5e-11
2bol_A		314	TSP36, small heat shock protein; A-crystallin, mol	2e-10
4eld_A		161	MJ16.5-P1, small heat shock protein HSP16.5; chape	1e-09
1gme_A		151	Heat shock protein 16.9B; small heat shock protein	1e-09
2y1y_A		90	Alpha-crystallin B chain,; small heat shock protei	1e-09
3gla_A		100	Low molecular weight heat shock protein; HSPA, SHP	7e-09
3aab_A		123	Putative uncharacterized protein ST1653; alpha-cry	6e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Length = 107	Back alignment and structure

 Score =  138 bits (351), Expect = 2e-40
 Identities = 57/104 (54%), Positives = 79/104 (75%), Gaps = 1/104 (0%)

Query: 40  SKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYN-GEINAFATGAFK 98
           SK +A  S+  MVI++P N TE WLL+TV + ++ A I  P VAIY+  +INAFATGA +
Sbjct: 4   SKGMALRSVGGMVIESPRNETEHWLLETVGRQAQQAGIGMPTVAIYDSADINAFATGAKR 63

Query: 99  NSSLIAISANLLESMTKLEIKAIIAHEISHISNGDMVTMLLIQG 142
           + SL+A+S  LL +MT+ E +A++AHE+SHI+NGDMVTM L+QG
Sbjct: 64  DDSLVAVSTGLLHNMTRDEAEAVLAHEVSHIANGDMVTMTLMQG 107

PyMOL of 3cqb

>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} Length = 482	Back alignment and structure

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101	Back alignment and structure

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85	Back alignment and structure

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106	Back alignment and structure

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175	Back alignment and structure

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314	Back alignment and structure

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161	Back alignment and structure

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151	Back alignment and structure

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90	Back alignment and structure

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100	Back alignment and structure

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		436
4aw6_A		482	CAAX prenyl protease 1 homolog; hydrolase, M48 pep	100.0
3c37_A		253	Peptidase, M48 family; Q74D82, GSR143A, structural	99.93
1gme_A		151	Heat shock protein 16.9B; small heat shock protein	99.93
4eld_A		161	MJ16.5-P1, small heat shock protein HSP16.5; chape	99.92
3gla_A		100	Low molecular weight heat shock protein; HSPA, SHP	99.92
3aab_A		123	Putative uncharacterized protein ST1653; alpha-cry	99.91
4fei_A		102	Heat shock protein-related protein; stress respons	99.91
3l1e_A		106	Alpha-crystallin A chain; lens transparency, polyd	99.9
2wj5_A		101	Heat shock protein beta-6; chaperone, disulfide bo	99.89
2klr_A		175	Alpha-crystallin B chain; protein, dimer, oligomer	99.86
3q9p_A		85	Heat shock protein beta-1; alpha-crystallin domain	99.85
3cqb_A		107	Probable protease HTPX homolog; heat shock protein	99.85
2y1y_A		90	Alpha-crystallin B chain,; small heat shock protei	99.84
2bol_A		314	TSP36, small heat shock protein; A-crystallin, mol	99.8
2bol_A		314	TSP36, small heat shock protein; A-crystallin, mol	99.74
1rl1_A		114	Suppressor of G2 allele of SKP1 homolog; beta sand	98.51
2xcm_C		92	SGT1-like protein, cytosolic heat shock protein 90	98.47
3igf_A		374	ALL4481 protein; two-domained protein consisting o	98.06
3eud_A		115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	98.0
2k8q_A		134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	97.91
1wh0_A		134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	96.67
3dte_A		301	IRRE protein; radiotolerance, gene regulation, met	96.64
1x5m_A		127	Calcyclin-binding protein; CS domain, structural g	96.37
2o30_A		131	Nuclear movement protein; MCSG, structural genomic	96.23
1wgv_A		124	KIAA1068 protein; CS domain, HSP20-like fold, stru	96.11
1ejf_A		125	Progesterone receptor P23; chaperone, CO-chaperone	96.0
1wfi_A		131	Nuclear distribution gene C homolog; NUDC, riken s	95.49
3qor_A		121	Nuclear migration protein NUDC; beta-sandwich, cha	95.27
2rh0_A		157	NUDC domain-containing protein 2; 13542905, nuclea	95.12
2kmw_A		150	Uncharacterized protein AT3G03773; protein structu	93.81
2cg9_X		134	CO-chaperone protein SBA1; chaperone complex, HSP9	93.33

>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A	Back alignment and structure

Probab=100.00  E-value=1.4e-34  Score=291.97  Aligned_cols=235  Identities=20%  Similarity=0.247  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCCCEEecCCCCcchhHHHHHHHHHHHhcCCCCCeEEEEC----C-CccEEEeCCCCC
Q psy5221          25 SIIFGFTGSIISLLLSKKIAKWSMNLMVIKNPSNFTEDWLLKTVNKISKNANISTPEVAIYN----G-EINAFATGAFKN   99 (436)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~L~~~l~~l~~~~g~~~p~v~v~~----~-~~NA~~~G~~~~   99 (436)
                      ++++.+++.+++.++.|.++...++..   +|.++++  |++.++++|+++|+|.|++||++    + .+|||++|++++
T Consensus       200 ~w~~~~~~~l~~~~iyP~~I~PLfnk~---~Pl~dg~--L~~~Ie~la~~~~fp~~~v~vv~gSkRs~~~NAy~~G~~~~  274 (482)
T 4aw6_A          200 AWLFTLVVSLVLVTIYADYIAPLFDKF---TPLPEGK--LKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFKN  274 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHSCE---EECCSSH--HHHHHHHHHHHTTCCEEEEEEECGGGTBSCCCEEEEESSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCC---ccCCcHH--HHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCceEEEcCCCC
Confidence            344444566777788888888888754   2777777  99999999999999999999999    4 899999999999


Q ss_pred             ccEEEEcHHHHh------------------------------------hcCHHHHHHHHHHHHHhhhcChHHHHHHHHHH
Q psy5221         100 SSLIAISANLLE------------------------------------SMTKLEIKAIIAHEISHISNGDMVTMLLIQGV  143 (436)
Q Consensus       100 ~~~v~it~gLl~------------------------------------~l~~~El~aVLAHElgHi~~~h~~~~~~~~~~  143 (436)
                      +++|+++++|.+                                    .|+++|++||+|||+||++++|+.++.++.. 
T Consensus       275 krIVl~dtLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~El~aVlaHElgH~~~~~~~~~~~~~~-  353 (482)
T 4aw6_A          275 KRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQ-  353 (482)
T ss_dssp             EEEEEEHHHHC------------------------------------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHH-
T ss_pred             cEEEEEchHHHhcccccccccccccccccccccccchhhcccchhhccCCCHHHHHHHHHHHHHHHHcccHHHHHHHHH-
Confidence            998888874444                                    1899999999999999999999999888755 


Q ss_pred             HHHHHHHHHHHHHHHHHh--hhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHhhhhhcCC
Q psy5221         144 INTFIILISRIFSYILDC--FLLNSYDDSNYNSNYNHKIYGLITTILQIFLGFGASIVVAWFSRNREFRADHGSAKLLGT  221 (436)
Q Consensus       144 ~~~~~~~~~~i~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~~E~~AD~~a~~~~g~  221 (436)
                      +.+++.++  +++.+..+  .+.+.|..+   .++..++.+++...+..++..++.++.+.+||.+|++||++|+++ |+
T Consensus       354 i~~~~~~~--l~~~l~~~~~l~~~~G~~~---~~p~~~~~llv~~~i~~P~~~l~~~i~~~~SR~~E~eAD~~a~~l-g~  427 (482)
T 4aw6_A          354 MNSFLCFF--LFAVLIGRKELFAAFGFYD---SQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKL-GK  427 (482)
T ss_dssp             HHHHHHHH--HHHHHTTCSHHHHHTTCCS---CCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TT
T ss_pred             HHHHHHHH--HHHHHHcchhhHhhcCCCC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CC
Confidence            33333332  23333322  111111211   112222332223333344456788899999999999999999999 67


Q ss_pred             chHHHHHHHHhhcccccCCChhhhhhhcccCcccchhhhhhhccCCChHHHHHHHHhcccccc
Q psy5221         222 PDPMISALRHLSNISIVNDLPKSIAILGINNNFKKKSFLKLFATHPSFEKRIAILSLLKLSLY  284 (436)
Q Consensus       222 ~~~l~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~RI~~L~~~~~~~~  284 (436)
                      |+++++||.|++..+.....++             ..+..+++|||++.+||++|++..++.+
T Consensus       428 p~~L~~AL~KL~~~n~s~~~~~-------------~~~~~~~sTHP~~~eRI~~L~~~~~~~~  477 (482)
T 4aw6_A          428 AKDLYSALIKLNKDNLGFPVSD-------------WLFSMWHYSHPPLLERLQALKTMKQHAE  477 (482)
T ss_dssp             HHHHHHHHHHHHHHTTCCSCCC-------------HHHHHHSCSSCCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHhcccCCCCC-------------hHHHHHhcCCcCHHHHHHHHHHhhHhhh
Confidence            9999999999998764333322             2367899999999999999998876653

PyMOL of 4aw6

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}	Back alignment and structure

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A	Back alignment and structure

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A	Back alignment and structure

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A	Back alignment and structure

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A	Back alignment and structure

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}	Back alignment and structure

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A	Back alignment and structure

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}	Back alignment and structure

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A	Back alignment and structure

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A	Back alignment and structure

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}	Back alignment and structure

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A	Back alignment and structure

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}	Back alignment and structure

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}	Back alignment and structure

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3	Back alignment and structure

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*	Back alignment and structure

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}	Back alignment and structure

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3	Back alignment and structure

>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A	Back alignment and structure

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}	Back alignment and structure

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4	Back alignment and structure

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2	Back alignment and structure

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4	Back alignment and structure

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A	Back alignment and structure

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}	Back alignment and structure

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}	Back alignment and structure

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		436
d1shsa_		115	b.15.1.1 (A:) Small heat shock protein {Archaeon M	6e-15
d1gmea_		150	b.15.1.1 (A:) Small heat shock protein {Wheat (Tri	1e-12

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115	Back information, alignment and structure


class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 68.5 bits (167), Expect = 6e-15
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 320 AQQSYPPYNIELVDENKYRITMAIAGFNRSDLEIETERDTLRIT---GRKQADTQQRNFL 376
           + + + P +I    +   ++   + G N+ D+ +    DTL I            +R   
Sbjct: 6   SGKGFMPISII-EGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIY 64

Query: 377 HRGIATRNFEHRFQLADHVHV--VAAFFDQGILNIDLIREVPEALKPRKIYI 426
                        +L   V     +A F+ G+L++ L +   E+   + I I
Sbjct: 65  SEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKA--ESSIKKGINI 114

PyMOL of d1shsa_

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		436
d1gmea_		150	Small heat shock protein {Wheat (Triticum aestivum	99.92
d1shsa_		115	Small heat shock protein {Archaeon Methanococcus j	99.9
d1rl1a_		92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	97.37
d1wh0a_		134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	95.86
d1ejfa_		110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	95.73
d1wfia_		131	Nuclear migration protein nudC {Mouse (Mus musculu	94.17
d1wgva_		124	NudC domain containing protein 3, NUDCD3 (KIAA1068	93.68
d1rl6a1		75	Ribosomal protein L6 {Bacillus stearothermophilus	83.38
d1r55a_		203	ADAM33 {Human (Homo sapiens) [TaxId: 9606]}	82.82
d1bswa_		197	Snake venom metalloprotease {Five-pace snake (Agki	81.57
d1quaa_		197	Snake venom metalloprotease {Chinese five-pace sna	81.08

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}	Back information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.92  E-value=2.6e-25  Score=189.97  Aligned_cols=131  Identities=17%  Similarity=0.310  Sum_probs=102.0

Q ss_pred             cccCccCc-chHHHHhhhhhhhhcc----cCCCCCceeEEEecCceEEEEEecCCCCCCceEEEEECC-EEEEEEEEecc
Q psy5221         296 FAPFYRST-IGFDRLAQIFDNVRTE----AQQSYPPYNIELVDENKYRITMAIAGFNRSDLEIETERD-TLRITGRKQAD  369 (436)
Q Consensus       296 ~~p~~~~~-~~~d~l~~~~~~~~~~----~~~~~p~~~i~~e~~~~~~v~~~lpG~~~edi~v~~~~~-~l~i~g~~~~~  369 (436)
                      |+||.+.+ +.|+.+..++......    ...+.|++|++ |++++|+|+++|||++||||+|+++++ .|+|+|+++.+
T Consensus         9 fDpF~d~~~d~f~~~~~~~~~~~~~~~~~~~~~~p~~dv~-e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~   87 (150)
T d1gmea_           9 FDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWK-ETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKE   87 (150)
T ss_dssp             BCTTCGGGSSHHHHHHHHGGGTTSSCCSHHHHGGGCEEEE-ECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCC
T ss_pred             cCCchhhhhchhhhhhhhhhccccccccccccCCCceeEE-ECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecc
Confidence            67776652 4455555544443221    12346899999 599999999999999999999999864 78999998765


Q ss_pred             --cCCCceEEEeeeeeeEEEEEECCCccc--eEeEEeeCcEEEEEEecCCCCCCCCeEeeec
Q psy5221         370 --TQQRNFLHRGIATRNFEHRFQLADHVH--VVAAFFDQGILNIDLIREVPEALKPRKIYIN  427 (436)
Q Consensus       370 --~~~~~~~~~e~~~~~f~r~~~lP~~v~--~~~A~~~~GvL~i~~pk~~~~~~~~~~I~I~  427 (436)
                        .++.+++++|+.+|+|+|+|.||+++|  .++|+|+||+|+|++||..++..++++|+|+
T Consensus        88 ~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lpK~~~~~~~~~~I~I~  149 (150)
T d1gmea_          88 KEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS  149 (150)
T ss_dssp             CCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEETTEEEEEEECCCCCTTCCCCCCCC
T ss_pred             cccccceeeeeeeccceEEEEEECCCCeeeceeEEEEECCEEEEEEEcCCcCCCCceEEecc
Confidence              345788999999999999999999998  4999999999999999965444445555554

PyMOL of d1gmea_

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]}	Back information, alignment and structure

>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese five-pace snake (Agkistrodon acutus), acutolysin C [TaxId: 36307]}	Back information, alignment and structure