Psyllid ID: psy5226

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580--

MLLEEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM

ccHHHHHHHHHHHHHHHcccccccccccccEEEccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEEccccEEEEEEcHHHHHHHHHHHHHccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccEEEEcccEEEEccccccccccEEEccccccccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHccccccccEEEEEEEEEEEEccEEEEcccccccEEEHHHHHHHHHccccccccHHHHccccccccEEEEEEEEccccccEEEEHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccc

ccHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHccccEccccEEEEEccHHHHHHHHHHHHHccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccHHccccHHHHHHHHHHHcccEEEccccEEEEEccccccccEEEEEcccccEEEcHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHcccccccccEEEEEEEEEEEEcccEEEEEcccccEEEHHHHHHHHHHcccccHHHccHHHHHHcHHHHHHHHHHcccccccEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc

MLLEEKQRIIKLFNLALkplliktnivptiileyprhashgdiscnISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIEIikpgfinlkISSSIKQKIIKYILSSgikfgqsnigsnKKILIEFVsanptgplhighgrqcaigDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLgkstwpdtayngeYITDIAKCFLKKkkiiskdrsINIIangkindlkAIRDFSVAYLRREQdidlkifgvkfdnyclesslyktgkVSLVTKLLIQSGKtyykdgalwlrttdygddkdrvvrksngdftyfVSDIAYHIFKWERGFIQAINiqgddhqgTITRVKAGLQAInigipndypnyILHKMVTVIKNGkevkiskrsgsYITIRNLIKWLSkteskndsieFREDLIRGRDLMRFFLIsrksdtdfIFDIDLalkrsdenpvyYIQYAHARIFSLLnqwggdkkslisikdlsslnteKELSLLVKlsnypevlvNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGlkligisaptkm

MLLEEKQRIIKLFNlalkpllikTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLgkstwpdtayNGEYITDIAKCFLKKKkiiskdrsiniiangkindlkaiRDFSVAYLRREQDIDLKIFGVKFDNYCLEsslyktgkvsLVTKLLIQSgktyykdgalwlrttdygddkdrvVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKngkevkiskrsgsyitiRNLIkwlskteskndsiefredlirgRDLMRFFLisrksdtdfIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGqvlnnglkligisaptkm

MLLEEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIEIIKPGFINLkisssikqkiikyilssGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDiakcflkkkkiiskdrsiniiANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGdkkslisikdlsslNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM

*******RIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGI******

***EEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPT**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		582	2.2.26 [Sep-21-2011]
A4G1E2		577	Arginine--tRNA ligase OS=	yes	N/A	0.987	0.996	0.585	0.0
A6SU56		577	Arginine--tRNA ligase OS=	yes	N/A	0.989	0.998	0.586	0.0
Q3JWP7		594	Arginine--tRNA ligase OS=	yes	N/A	0.955	0.936	0.543	0.0
A1V839		594	Arginine--tRNA ligase OS=	yes	N/A	0.955	0.936	0.543	0.0
Q62MY7		594	Arginine--tRNA ligase OS=	yes	N/A	0.955	0.936	0.543	0.0
A2S7P3		594	Arginine--tRNA ligase OS=	yes	N/A	0.955	0.936	0.543	0.0
A3MNI3		594	Arginine--tRNA ligase OS=	yes	N/A	0.955	0.936	0.543	0.0
Q63Y06		594	Arginine--tRNA ligase OS=	yes	N/A	0.955	0.936	0.543	0.0
A3N542		594	Arginine--tRNA ligase OS=	yes	N/A	0.955	0.936	0.543	0.0
A3NQU2		594	Arginine--tRNA ligase OS=	yes	N/A	0.955	0.936	0.543	0.0

>sp\|A4G1E2\|SYR_HERAR Arginine--tRNA ligase OS=Herminiimonas arsenicoxydans GN=argS PE=3 SV=1	Back alignment and function desciption

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/584 (58%), Positives = 453/584 (77%), Gaps = 9/584 (1%)

Query: 1   MLLEEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSY 60
           ML  +KQRI +LF  A+ PL+  T + PT+ LE PR  SHGD++CN++MQI+K L+ N  
Sbjct: 1   MLAAQKQRITELFQAAVAPLVAGTELNPTVTLERPRDPSHGDVACNLAMQIAKPLKKNPR 60

Query: 61  KLAKIIAKNLIQQKNYIKLIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIG 120
           ++A+++   L+       LI+S EI  PGFINL+++ + +Q ++K +L  G ++G+SN+G
Sbjct: 61  EVAQVLVAALLDNPANRDLIESAEIAGPGFINLRLTPASRQSVVKTVLQQGAQYGKSNLG 120

Query: 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLA 180
           + KK++IEFVSANPTGPLH+GHGRQ A+GD +SSLF +QGY VTREFYYND GVQI  LA
Sbjct: 121 AGKKVIIEFVSANPTGPLHVGHGRQGALGDAMSSLFDAQGYAVTREFYYNDAGVQIATLA 180

Query: 181 LSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKA 240
            SVQARA+ +  G   WP++AYNG+YI DIA  FL KK + + D  + + A+G I+D+++
Sbjct: 181 TSVQARARGLKPGAEGWPESAYNGDYIQDIANDFLAKKTVSASD-GLPVTASGDIDDIES 239

Query: 241 IRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALW 300
           IR F+VAYLRREQD+DL+ FGVKFDNY LESSLY  GKV+     LI++ KTY  DGALW
Sbjct: 240 IRAFAVAYLRREQDLDLQAFGVKFDNYYLESSLYNDGKVAATVDALIKADKTYELDGALW 299

Query: 301 LRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAG 360
           LRTTDY DDKDRV++KS+G +TYFV D+AYH  KW+RGF QAIN+QG DH GTI RV+AG
Sbjct: 300 LRTTDYRDDKDRVMKKSDGTYTYFVPDVAYHTVKWQRGFTQAINVQGSDHHGTIARVRAG 359

Query: 361 LQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIE 420
           LQA++IGIP  YP+Y+LHKMVTV++NG+EVKISKR+GSY+T+R+LI+W     S  +++E
Sbjct: 360 LQALDIGIPQGYPDYVLHKMVTVMRNGEEVKISKRAGSYVTLRDLIEW-----SNGETVE 414

Query: 421 FRE-DLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQW- 478
            +E DL RGRD +RFFLISRK+DT+F+FD+D+AL +SDENPVYY+QYAHARI S+L QW 
Sbjct: 415 GQERDLTRGRDAVRFFLISRKADTEFVFDVDVALSQSDENPVYYVQYAHARICSVLAQWT 474

Query: 479 GGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHG 538
            GD+ +L+ + DLS L   +E +LL KL+ YPE L  ++++L PH VAFYLRDLA ELH 
Sbjct: 475 DGDEAALLDV-DLSPLTAPREAALLAKLAEYPEALQRALEELGPHQVAFYLRDLAAELHS 533

Query: 539 YYNTERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582
           YYN ER+LV ++ +KMARL L+++  QVL NGL LIG+SAP +M
Sbjct: 534 YYNAERVLVDDVALKMARLTLMHATRQVLRNGLALIGVSAPARM 577

Herminiimonas arsenicoxydans (taxid: 204773)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9

>sp\|A6SU56\|SYR_JANMA Arginine--tRNA ligase OS=Janthinobacterium sp. (strain Marseille) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|Q3JWP7\|SYR_BURP1 Arginine--tRNA ligase OS=Burkholderia pseudomallei (strain 1710b) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|A1V839\|SYR_BURMS Arginine--tRNA ligase OS=Burkholderia mallei (strain SAVP1) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|Q62MY7\|SYR_BURMA Arginine--tRNA ligase OS=Burkholderia mallei (strain ATCC 23344) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|A2S7P3\|SYR_BURM9 Arginine--tRNA ligase OS=Burkholderia mallei (strain NCTC 10229) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|A3MNI3\|SYR_BURM7 Arginine--tRNA ligase OS=Burkholderia mallei (strain NCTC 10247) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|Q63Y06\|SYR_BURPS Arginine--tRNA ligase OS=Burkholderia pseudomallei (strain K96243) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|A3N542\|SYR_BURP6 Arginine--tRNA ligase OS=Burkholderia pseudomallei (strain 668) GN=argS PE=3 SV=1	Back alignment and function description

>sp\|A3NQU2\|SYR_BURP0 Arginine--tRNA ligase OS=Burkholderia pseudomallei (strain 1106a) GN=argS PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		582
399021093		575	arginyl-tRNA synthetase [Herbaspirillum	0.987	1.0	0.585	0.0
340789455		585	arginyl-tRNA synthetase [Collimonas fung	0.996	0.991	0.582	0.0
134093383		577	arginyl-tRNA synthetase [Herminiimonas a	0.987	0.996	0.585	0.0
398832316		579	arginyl-tRNA synthetase [Herbaspirillum	0.994	1.0	0.577	0.0
415917589		577	arginyl-tRNA synthetase [Herbaspirillum	0.989	0.998	0.572	0.0
152980236		577	arginyl-tRNA synthetase [Janthinobacteri	0.989	0.998	0.586	0.0
395760185		569	arginyl-tRNA ligase [Janthinobacterium l	0.977	1.0	0.563	0.0
409408144		606	arginyl-tRNA synthetase [Herbaspirillum	0.989	0.950	0.574	0.0
300313639		577	arginyl-tRNA synthetase [Herbaspirillum	0.989	0.998	0.574	0.0
329901351		553	Arginyl-tRNA synthetase [Oxalobacteracea	0.941	0.990	0.584	0.0

>gi\|399021093\|ref\|ZP_10723212.1\| arginyl-tRNA synthetase [Herbaspirillum sp. CF444] gi\|398093077\|gb\|EJL83467.1\| arginyl-tRNA synthetase [Herbaspirillum sp. CF444]	Back alignment and taxonomy information

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/582 (58%), Positives = 449/582 (77%), Gaps = 7/582 (1%)

Query: 1   MLLEEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSY 60
           ML ++KQRI +LF  AL PL+  T++ PT+ LE PR  SHGDI+CN++MQ++K L+ N  
Sbjct: 1   MLAQQKQRITELFQAALAPLIAGTDLTPTVTLERPRDPSHGDIACNLAMQLAKPLKKNPR 60

Query: 61  KLAKIIAKNLIQQKNYIKLIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIG 120
           +LA+ +   ++ Q    +LI S +I  PGFINL+++ + KQ ++K IL+ G ++G+S  G
Sbjct: 61  ELAQALVDGVLSQPGREELISSADIAGPGFINLRVADAAKQAVVKTILAEGAEYGKSKAG 120

Query: 121 SNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLA 180
           + KK+L+EFVSANPTGPLH+GHGRQ A+GD +S+L  SQGY V REFYYND GVQI  LA
Sbjct: 121 AGKKVLVEFVSANPTGPLHVGHGRQGALGDAMSALLQSQGYDVLREFYYNDAGVQIATLA 180

Query: 181 LSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKA 240
            SVQARAK    G + WP++AYNG+YI DIA  F K KK +S        A+G + D+++
Sbjct: 181 TSVQARAKGFKPGDAEWPESAYNGDYIADIADDF-KAKKTVSASDGEPATASGDVEDIES 239

Query: 241 IRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALW 300
           IR F+VAYLRREQD+DL+ FGVKFDNY LESSLY  GKV+   + LI++GKTY  DGALW
Sbjct: 240 IRRFAVAYLRREQDLDLQAFGVKFDNYYLESSLYTEGKVTAAVEALIKAGKTYELDGALW 299

Query: 301 LRTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAG 360
           LRTTDYGDDKDRV++K++G +TYFV D+AYHI KW+RG+ + IN+QG DH GTI RV+AG
Sbjct: 300 LRTTDYGDDKDRVMKKTDGTYTYFVPDVAYHITKWQRGYGKVINVQGSDHHGTIARVRAG 359

Query: 361 LQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIE 420
           LQA N+GIP  YP+Y+LHKMVTV+KNG+EVKISKR+GSY+T+R+LI+W + +E++     
Sbjct: 360 LQAANVGIPQGYPDYVLHKMVTVMKNGEEVKISKRAGSYVTLRDLIEWSNGSEAEAG--- 416

Query: 421 FREDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGG 480
              DL RGRD +RFFLISRK+D++F+FD+D+AL R+DENPVYY+QYAHARI S+L QW G
Sbjct: 417 ---DLTRGRDAVRFFLISRKADSEFVFDVDVALTRNDENPVYYVQYAHARICSVLAQWAG 473

Query: 481 DKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYY 540
           D+ +L  + DLS L   +E+SLL KL+ YPE L +++++L PH VAFYLRDLA ELH YY
Sbjct: 474 DESTLDQVSDLSPLTAPREVSLLAKLAEYPEALAHALQELGPHQVAFYLRDLAGELHSYY 533

Query: 541 NTERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582
           N ER+LV ++  KMARLAL+ +  QVL NGL LIG+SAP++M
Sbjct: 534 NAERVLVDDVPTKMARLALMSATRQVLRNGLALIGVSAPSRM 575

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi\|340789455\|ref\|YP_004754920.1\| arginyl-tRNA synthetase [Collimonas fungivorans Ter331] gi\|340554722\|gb\|AEK64097.1\| Arginyl-tRNA synthetase [Collimonas fungivorans Ter331]	Back alignment and taxonomy information

>gi\|134093383\|ref\|YP_001098458.1\| arginyl-tRNA synthetase [Herminiimonas arsenicoxydans] gi\|166232794\|sp\|A4G1E2.1\|SYR_HERAR RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA synthetase; Short=ArgRS gi\|133737286\|emb\|CAL60329.1\| putative arginyl-tRNA synthetase (ArgS) [Herminiimonas arsenicoxydans]	Back alignment and taxonomy information

>gi\|398832316\|ref\|ZP_10590477.1\| arginyl-tRNA synthetase [Herbaspirillum sp. YR522] gi\|398223413\|gb\|EJN09757.1\| arginyl-tRNA synthetase [Herbaspirillum sp. YR522]	Back alignment and taxonomy information

>gi\|415917589\|ref\|ZP_11554135.1\| arginyl-tRNA synthetase [Herbaspirillum frisingense GSF30] gi\|407761330\|gb\|EKF70414.1\| arginyl-tRNA synthetase [Herbaspirillum frisingense GSF30]	Back alignment and taxonomy information

>gi\|152980236\|ref\|YP_001351803.1\| arginyl-tRNA synthetase [Janthinobacterium sp. Marseille] gi\|166232796\|sp\|A6SU56.1\|SYR_JANMA RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA synthetase; Short=ArgRS gi\|151280313\|gb\|ABR88723.1\| arginyl-tRNA synthetase [Janthinobacterium sp. Marseille]	Back alignment and taxonomy information

>gi\|395760185\|ref\|ZP_10440854.1\| arginyl-tRNA ligase [Janthinobacterium lividum PAMC 25724]	Back alignment and taxonomy information

>gi\|409408144\|ref\|ZP_11256588.1\| arginyl-tRNA synthetase [Herbaspirillum sp. GW103] gi\|386432600\|gb\|EIJ45427.1\| arginyl-tRNA synthetase [Herbaspirillum sp. GW103]	Back alignment and taxonomy information

>gi\|300313639\|ref\|YP_003777731.1\| arginyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gi\|300076424\|gb\|ADJ65823.1\| arginyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1]	Back alignment and taxonomy information

>gi\|329901351\|ref\|ZP_08272796.1\| Arginyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] gi\|327549132\|gb\|EGF33727.1\| Arginyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		582
TIGR_CMR\|GSU_1812		561	GSU_1812 "arginyl-tRNA synthet	0.644	0.668	0.507	2.5e-97
TIGR_CMR\|BA_5611		556	BA_5611 "arginyl-tRNA syntheta	0.671	0.703	0.369	3e-93
TIGR_CMR\|CHY_0124		557	CHY_0124 "arginyl-tRNA synthet	0.620	0.648	0.365	2.1e-90
TIGR_CMR\|DET_1270		556	DET_1270 "arginyl-tRNA synthet	0.625	0.654	0.331	2.9e-74
UNIPROTKB\|P67569		550	argS "Arginine--tRNA ligase" [	0.601	0.636	0.336	4.2e-71
TIGR_CMR\|ECH_0537		576	ECH_0537 "arginyl-tRNA synthet	0.915	0.925	0.317	4.8e-71
TIGR_CMR\|SPO_2504		581	SPO_2504 "arginyl-tRNA synthet	0.895	0.896	0.327	2.6e-70
TIGR_CMR\|APH_0700		580	APH_0700 "arginyl-tRNA synthet	0.903	0.906	0.309	4.7e-64
TIGR_CMR\|CBU_2008		592	CBU_2008 "arginyl-tRNA synthet	0.326	0.320	0.377	7.7e-57
TIGR_CMR\|NSE_0049		570	NSE_0049 "arginyl-tRNA synthet	0.874	0.892	0.292	2.4e-53

TIGR_CMR\|GSU_1812 GSU_1812 "arginyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 193/380 (50%), Positives = 250/380 (65%)

Query:    27 VPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSIEII 86
             VP I++E P    HGD +C  +M ++K  +     +A+II  +L  +++   L++S+EI 
Sbjct:    27 VPDIVVEKPALEEHGDFACTAAMLMAKAEKKAPRAIAEIIITHLNDRES---LVESVEIA 83

Query:    87 KPGFINLXXXXXXXXXXXXXXXXXGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQC 146
              PGFIN                  G  +G+S  G+ KK+ +EFVSANPTGPLHIGHGR  
Sbjct:    84 GPGFINFRMRTSAWCRVLRRIEREGGDYGKSEAGAGKKVQVEFVSANPTGPLHIGHGRGA 143

Query:   147 AIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEY 206
             AIGD +  L  + G+ VTREFYYND G QI NLALSVQAR   +  G   WP   Y GEY
Sbjct:   144 AIGDTICRLLAAIGWDVTREFYYNDAGQQIANLALSVQARCLGVEPGGPLWPTDGYQGEY 203

Query:   207 ITDXXXXXXXXXXXXXXXXXXXXXANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDN 266
             I D                     A G  +D++AIR F+VAYLRREQD DL+ F V FD 
Sbjct:   204 IKDVARSYLNRETVDAGDQHVT--AAGDPHDVEAIRRFAVAYLRREQDQDLRAFDVGFDV 261

Query:   267 YCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVS 326
             Y LESSLY  G+V  V + +I  G  Y +DGALWLRTT++GDDKDRV+RKS+G +TYFV 
Sbjct:   262 YFLESSLYAEGRVDDVVQRIIAKGHAYEQDGALWLRTTEFGDDKDRVMRKSDGSYTYFVP 321

Query:   327 DIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKN 386
             D+AYH+ KWERGFI+ +N QG DH  TITRV+AGLQA++ GIP  +P Y+LH+MVTV++ 
Sbjct:   322 DVAYHLNKWERGFIRVVNEQGADHHSTITRVRAGLQALDAGIPKGWPEYVLHQMVTVMRG 381

Query:   387 GKEVKISKRSGSYITIRNLI 406
             G+EVKISKR+GSY+T+R+L+
Sbjct:   382 GEEVKISKRAGSYVTLRDLV 401

GO:0004814 "arginine-tRNA ligase activity" evidence=ISS

GO:0006420 "arginyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR\|BA_5611 BA_5611 "arginyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0124 CHY_0124 "arginyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|DET_1270 DET_1270 "arginyl-tRNA synthetase" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

UNIPROTKB\|P67569 argS "Arginine--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

TIGR_CMR\|ECH_0537 ECH_0537 "arginyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_2504 SPO_2504 "arginyl-tRNA synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|APH_0700 APH_0700 "arginyl-tRNA synthetase" [Anaplasma phagocytophilum HZ (taxid:212042)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_2008 CBU_2008 "arginyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

TIGR_CMR\|NSE_0049 NSE_0049 "arginyl-tRNA synthetase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q74C63	SYR_GEOSL	6, ., 1, ., 1, ., 1, 9	0.4769	0.9226	0.9572	yes	N/A
Q2KTN9	SYR_BORA1	6, ., 1, ., 1, ., 1, 9	0.4914	0.9604	0.9964	yes	N/A
Q146I4	SYR_BURXL	6, ., 1, ., 1, ., 1, 9	0.5449	0.9518	0.9295	yes	N/A
A0KAZ0	SYR_BURCH	6, ., 1, ., 1, ., 1, 9	0.5467	0.9484	0.9308	yes	N/A
B1YNQ7	SYR_BURA4	6, ., 1, ., 1, ., 1, 9	0.5486	0.9518	0.9342	yes	N/A
Q39VQ6	SYR_GEOMG	6, ., 1, ., 1, ., 1, 9	0.4778	0.9226	0.9555	yes	N/A
A4JIA2	SYR_BURVG	6, ., 1, ., 1, ., 1, 9	0.5451	0.9518	0.9342	yes	N/A
Q63Y06	SYR_BURPS	6, ., 1, ., 1, ., 1, 9	0.5435	0.9553	0.9360	yes	N/A
Q7W2Q2	SYR_BORPA	6, ., 1, ., 1, ., 1, 9	0.4828	0.9604	0.9964	yes	N/A
A3N542	SYR_BURP6	6, ., 1, ., 1, ., 1, 9	0.5435	0.9553	0.9360	yes	N/A
B1JZC6	SYR_BURCC	6, ., 1, ., 1, ., 1, 9	0.5467	0.9484	0.9308	yes	N/A
B2AG76	SYR_CUPTR	6, ., 1, ., 1, ., 1, 9	0.4983	0.9982	0.9764	yes	N/A
Q1QZZ4	SYR_CHRSD	6, ., 1, ., 1, ., 1, 9	0.4547	0.9484	0.9839	yes	N/A
Q1LS94	SYR_RALME	6, ., 1, ., 1, ., 1, 9	0.5025	0.9965	0.9634	yes	N/A
Q0KFB0	SYR_CUPNH	6, ., 1, ., 1, ., 1, 9	0.4949	0.9982	0.9764	yes	N/A
A4G1E2	SYR_HERAR	6, ., 1, ., 1, ., 1, 9	0.5856	0.9879	0.9965	yes	N/A
A9AE58	SYR_BURM1	6, ., 1, ., 1, ., 1, 9	0.5557	0.9518	0.9264	yes	N/A
A5G3W5	SYR_GEOUR	6, ., 1, ., 1, ., 1, 9	0.4663	0.9226	0.9572	yes	N/A
Q7WDQ0	SYR_BORBR	6, ., 1, ., 1, ., 1, 9	0.4828	0.9604	0.9964	yes	N/A
A9BRF4	SYR_DELAS	6, ., 1, ., 1, ., 1, 9	0.4946	0.9072	0.9345	yes	N/A
A2SC26	SYR_METPP	6, ., 1, ., 1, ., 1, 9	0.5042	0.9570	0.9928	yes	N/A
A6SU56	SYR_JANMA	6, ., 1, ., 1, ., 1, 9	0.5866	0.9896	0.9982	yes	N/A
Q1BT49	SYR_BURCA	6, ., 1, ., 1, ., 1, 9	0.5467	0.9484	0.9308	yes	N/A
Q2T1N6	SYR_BURTA	6, ., 1, ., 1, ., 1, 9	0.5452	0.9553	0.9360	yes	N/A
B2JKJ2	SYR_BURP8	6, ., 1, ., 1, ., 1, 9	0.5451	0.9518	0.9326	yes	N/A
B4STE2	SYR_STRM5	6, ., 1, ., 1, ., 1, 9	0.4454	0.9192	0.9519	yes	N/A
B1XSF4	SYR_POLNS	6, ., 1, ., 1, ., 1, 9	0.5271	0.9742	0.9860	yes	N/A
Q39CG0	SYR_BURS3	6, ., 1, ., 1, ., 1, 9	0.5483	0.9518	0.9342	yes	N/A
Q477C4	SYR_CUPPJ	6, ., 1, ., 1, ., 1, 9	0.5016	0.9982	0.9764	yes	N/A
Q7W0K0	SYR_BORPE	6, ., 1, ., 1, ., 1, 9	0.4828	0.9587	0.9964	yes	N/A
Q3JWP7	SYR_BURP1	6, ., 1, ., 1, ., 1, 9	0.5435	0.9553	0.9360	yes	N/A
Q62MY7	SYR_BURMA	6, ., 1, ., 1, ., 1, 9	0.5435	0.9553	0.9360	yes	N/A
B4E9M9	SYR_BURCJ	6, ., 1, ., 1, ., 1, 9	0.5467	0.9484	0.9308	yes	N/A
B2SWV4	SYR_BURPP	6, ., 1, ., 1, ., 1, 9	0.5414	0.9518	0.9295	yes	N/A
Q123B6	SYR_POLSJ	6, ., 1, ., 1, ., 1, 9	0.5068	0.9587	0.9946	yes	N/A
A1TJ83	SYR_ACIAC	6, ., 1, ., 1, ., 1, 9	0.5035	0.9072	0.9279	yes	N/A
B9MBD2	SYR_ACIET	6, ., 1, ., 1, ., 1, 9	0.4946	0.9106	0.9347	yes	N/A
A9HVX4	SYR_BORPD	6, ., 1, ., 1, ., 1, 9	0.4990	0.9140	0.9483	yes	N/A
Q8Y2P8	SYR_RALSO	6, ., 1, ., 1, ., 1, 9	0.5099	0.9965	0.9666	yes	N/A
A1TYU8	SYR_MARAV	6, ., 1, ., 1, ., 1, 9	0.4698	0.8934	0.9269	yes	N/A
B2UDW0	SYR_RALPJ	6, ., 1, ., 1, ., 1, 9	0.5183	0.9965	0.9731	yes	N/A
A2S7P3	SYR_BURM9	6, ., 1, ., 1, ., 1, 9	0.5435	0.9553	0.9360	yes	N/A
A1V839	SYR_BURMS	6, ., 1, ., 1, ., 1, 9	0.5435	0.9553	0.9360	yes	N/A
A1VTL9	SYR_POLNA	6, ., 1, ., 1, ., 1, 9	0.5263	0.9106	0.9498	yes	N/A
A3NQU2	SYR_BURP0	6, ., 1, ., 1, ., 1, 9	0.5435	0.9553	0.9360	yes	N/A
A3MNI3	SYR_BURM7	6, ., 1, ., 1, ., 1, 9	0.5435	0.9553	0.9360	yes	N/A
Q220N0	SYR_RHOFD	6, ., 1, ., 1, ., 1, 9	0.5232	0.9106	0.9380	yes	N/A
Q3SF80	SYR_THIDA	6, ., 1, ., 1, ., 1, 9	0.4974	0.9450	0.9874	yes	N/A
Q0BBE9	SYR_BURCM	6, ., 1, ., 1, ., 1, 9	0.5469	0.9518	0.9342	yes	N/A
B1XYP5	SYR_LEPCP	6, ., 1, ., 1, ., 1, 9	0.4973	0.9192	0.9536	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.19	0.946
3rd Layer	6.1.1	0.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		582
PRK01611		507	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	1e-171
COG0018		577	COG0018, ArgS, Arginyl-tRNA synthetase [Translatio	1e-168
TIGR00456		566	TIGR00456, argS, arginyl-tRNA synthetase	1e-111
cd00671		212	cd00671, ArgRS_core, catalytic core domain of argi	6e-62
pfam00750		345	pfam00750, tRNA-synt_1d, tRNA synthetases class I	2e-59
cd07956		156	cd07956, Anticodon_Ia_Arg, Anticodon-binding domai	5e-44
smart00836		122	smart00836, DALR_1, DALR anticodon binding domain	3e-40
pfam05746		117	pfam05746, DALR_1, DALR anticodon binding domain	8e-34
PRK12451		562	PRK12451, PRK12451, arginyl-tRNA synthetase; Revie	2e-30
smart01016		85	smart01016, Arg_tRNA_synt_N, Arginyl tRNA syntheta	2e-17
pfam03485		84	pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetas	2e-15
PLN02286		576	PLN02286, PLN02286, arginine-tRNA ligase	6e-15
PLN02286		576	PLN02286, PLN02286, arginine-tRNA ligase	4e-07
cd00802		143	cd00802, class_I_aaRS_core, catalytic core domain	3e-04
cd07375		117	cd07375, Anticodon_Ia_like, Anticodon-binding doma	0.003

>gnl\|CDD\|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

 Score =  495 bits (1278), Expect = e-171
 Identities = 206/580 (35%), Positives = 313/580 (53%), Gaps = 81/580 (13%)

Query: 6   KQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKI 65
           K+ + +    AL+   +    +P +++E P+   HGD + N++MQ++KKL+ N  ++A+ 
Sbjct: 6   KELLAEALAAALEAGGLPE--LPAVLIERPKDPEHGDYATNVAMQLAKKLKKNPREIAEE 63

Query: 66  IAKNLIQQKNYIKLIQSIEIIKPGFINLKISSSIKQKIIKYILSSGIKFGQSNIGSNKKI 125
           I +           I+ +EI  PGFIN  +  +   +++  IL +G ++G+S+IG  KK+
Sbjct: 64  IVEA----------IEKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKV 113

Query: 126 LIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQA 185
           ++E+VSANPTGPLH+GH R   IGD L+ +    GY VTRE+Y ND G QI  L  S++ 
Sbjct: 114 VVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLEL 173

Query: 186 -RAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAIR-D 243
              KA+                                 D S++ I      DL  +   
Sbjct: 174 LWRKAV---------------------------------DISLDEIK----EDLDRLGVH 196

Query: 244 FSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYY-KDGALWLR 302
           F V +   E                    LY  GKV  V + L + G  Y   DGALW+R
Sbjct: 197 FDVWFSESE--------------------LYYNGKVDEVVEDLKEKGLLYVESDGALWVR 236

Query: 303 TTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQ 362
            T++GDDKDRV+ KS+G +TYF  DIAYH++K+ER F + I + G DH G   R+KA L+
Sbjct: 237 LTEFGDDKDRVLIKSDGTYTYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRLKAALK 295

Query: 363 AINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEFR 422
           A  +G   D    +LH+MV +++ G+ VK+S R+G+ +T+ +L+   +   ++    E  
Sbjct: 296 A--LGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDE-AVGRARELIEEKE 352

Query: 423 EDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDK 482
                G D +R+F +SR  D D  FD+DLAL     NP  Y+QYAHARI S+L +     
Sbjct: 353 IAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPP-YVQYAHARICSILRKAAEAG 411

Query: 483 KSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNT 542
             L     L+ L  E+E  L+ KL+ +PEV+ ++ ++L PH +A YL +LA   H +YN 
Sbjct: 412 IDL----LLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNR 467

Query: 543 ERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582
             +  +   ++ ARLAL+ +  QVL NGL L+GISAP +M
Sbjct: 468 VLLKDEEEELRNARLALVKATAQVLKNGLDLLGISAPERM 507

Length = 507

>gnl\|CDD\|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|232981 TIGR00456, argS, arginyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R)	Back alignment and domain information

>gnl\|CDD\|153410 cd07956, Anticodon_Ia_Arg, Anticodon-binding domain of arginyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|214846 smart00836, DALR_1, DALR anticodon binding domain	Back alignment and domain information

>gnl\|CDD\|218729 pfam05746, DALR_1, DALR anticodon binding domain	Back alignment and domain information

>gnl\|CDD\|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|214975 smart01016, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal dom	Back alignment and domain information

>gnl\|CDD\|217589 pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal domain	Back alignment and domain information

>gnl\|CDD\|215160 PLN02286, PLN02286, arginine-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|215160 PLN02286, PLN02286, arginine-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		582
COG0018		577	ArgS Arginyl-tRNA synthetase [Translation, ribosom	100.0
PLN02286		576	arginine-tRNA ligase	100.0
PRK12451		562	arginyl-tRNA synthetase; Reviewed	100.0
TIGR00456		566	argS arginyl-tRNA synthetase. This model recognize	100.0
PRK01611		507	argS arginyl-tRNA synthetase; Reviewed	100.0
KOG4426\|consensus		656		100.0
KOG1195\|consensus		567		100.0
PF00750		354	tRNA-synt_1d: tRNA synthetases class I (R); InterP	100.0
cd00671		212	ArgRS_core catalytic core domain of arginyl-tRNA s	100.0
PTZ00399		651	cysteinyl-tRNA-synthetase; Provisional	100.0
PLN02946		557	cysteine-tRNA ligase	100.0
PRK11893		511	methionyl-tRNA synthetase; Reviewed	100.0
COG0143		558	MetG Methionyl-tRNA synthetase [Translation, ribos	100.0
PRK00260		463	cysS cysteinyl-tRNA synthetase; Validated	100.0
TIGR00398		530	metG methionyl-tRNA synthetase. The methionyl-tRNA	100.0
PLN02224		616	methionine-tRNA ligase	100.0
PRK12267		648	methionyl-tRNA synthetase; Reviewed	100.0
PRK00133		673	metG methionyl-tRNA synthetase; Reviewed	100.0
TIGR00435		465	cysS cysteinyl-tRNA synthetase. This model finds t	100.0
COG0215		464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	100.0
PRK14536		490	cysS cysteinyl-tRNA synthetase; Provisional	99.98
PRK14534		481	cysS cysteinyl-tRNA synthetase; Provisional	99.97
PRK14535		699	cysS cysteinyl-tRNA synthetase; Provisional	99.97
PRK12268		556	methionyl-tRNA synthetase; Reviewed	99.97
PLN02610		801	probable methionyl-tRNA synthetase	99.97
cd07956		156	Anticodon_Ia_Arg Anticodon-binding domain of argin	99.97
PRK12418		384	cysteinyl-tRNA synthetase; Provisional	99.97
TIGR03447		411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	99.96
PF01406		300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	99.96
KOG2007\|consensus		586		99.95
KOG0436\|consensus		578		99.94
cd00674		353	LysRS_core_class_I catalytic core domain of class	99.94
cd00814		319	MetRS_core catalytic core domain of methioninyl-tR	99.94
cd00812		314	LeuRS_core catalytic core domain of leucyl-tRNA sy	99.94
cd00668		312	Ile_Leu_Val_MetRS_core catalytic core domain of is	99.93
PF09334		391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	99.92
cd00672		213	CysRS_core catalytic core domain of cysteinyl tRNA	99.92
PF05746		119	DALR_1: DALR anticodon binding domain; InterPro: I	99.91
PRK13208		800	valS valyl-tRNA synthetase; Reviewed	99.91
PRK00750		510	lysK lysyl-tRNA synthetase; Reviewed	99.9
cd00818		338	IleRS_core catalytic core domain of isoleucyl-tRNA	99.89
TIGR00422		861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	99.89
TIGR00467		515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	99.89
PRK05729		874	valS valyl-tRNA synthetase; Reviewed	99.88
cd00817		382	ValRS_core catalytic core domain of valyl-tRNA syn	99.88
COG0525		877	ValS Valyl-tRNA synthetase [Translation, ribosomal	99.87
smart00836		122	DALR_1 DALR anticodon binding domain. This all alp	99.86
PRK14900		1052	valS valyl-tRNA synthetase; Provisional	99.85
cd00802		143	class_I_aaRS_core catalytic core domain of class I	99.84
PLN02943		958	aminoacyl-tRNA ligase	99.83
TIGR00464		470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	99.83
TIGR00392		861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	99.83
PF01921		360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	99.82
PRK06039		975	ileS isoleucyl-tRNA synthetase; Reviewed	99.82
COG1384		521	LysS Lysyl-tRNA synthetase (class I) [Translation,	99.81
PTZ00419		995	valyl-tRNA synthetase-like protein; Provisional	99.8
PRK05743		912	ileS isoleucyl-tRNA synthetase; Reviewed	99.8
PRK01406		476	gltX glutamyl-tRNA synthetase; Reviewed	99.8
PLN02882		1159	aminoacyl-tRNA ligase	99.79
PLN02381		1066	valyl-tRNA synthetase	99.77
PLN02843		974	isoleucyl-tRNA synthetase	99.77
PRK13804		961	ileS isoleucyl-tRNA synthetase; Provisional	99.75
PF03485		85	Arg_tRNA_synt_N: Arginyl tRNA synthetase N termina	99.74
TIGR00395		938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	99.74
PRK00390		805	leuS leucyl-tRNA synthetase; Validated	99.74
PRK12558		445	glutamyl-tRNA synthetase; Provisional	99.73
PTZ00427		1205	isoleucine-tRNA ligase, putative; Provisional	99.72
PRK14895		513	gltX glutamyl-tRNA synthetase; Provisional	99.72
KOG1247\|consensus		567		99.7
TIGR00396		842	leuS_bact leucyl-tRNA synthetase, eubacterial and	99.69
COG0495		814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	99.62
PRK04156		567	gltX glutamyl-tRNA synthetase; Provisional	99.61
PRK12410		433	glutamylglutaminyl-tRNA synthetase; Provisional	99.6
PF00133		601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	99.6
PLN02627		535	glutamyl-tRNA synthetase	99.6
cd09287		240	GluRS_non_core catalytic core domain of non-discri	99.57
cd00808		239	GluRS_core catalytic core domain of discriminating	99.57
PF00749		314	tRNA-synt_1c: tRNA synthetases class I (E and Q),	99.55
cd00418		230	GlxRS_core catalytic core domain of glutamyl-tRNA	99.53
TIGR03838		272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	99.46
KOG0432\|consensus		995		99.43
COG0008		472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	99.43
cd00807		238	GlnRS_core catalytic core domain of glutaminyl-tRN	99.4
PRK05710		299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	99.38
PLN03233		523	putative glutamate-tRNA ligase; Provisional	99.37
TIGR00463		560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	99.29
PLN02907		722	glutamate-tRNA ligase	99.28
PRK12300		897	leuS leucyl-tRNA synthetase; Reviewed	99.27
PTZ00402		601	glutamyl-tRNA synthetase; Provisional	99.26
COG0060		933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	99.22
PRK05347		554	glutaminyl-tRNA synthetase; Provisional	99.21
PRK14703		771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	99.13
KOG1149\|consensus		524		99.09
PLN02859		788	glutamine-tRNA ligase	99.07
PLN02563		963	aminoacyl-tRNA ligase	99.07
TIGR00440		522	glnS glutaminyl-tRNA synthetase. This protein is a	98.96
PTZ00437		574	glutaminyl-tRNA synthetase; Provisional	98.85
KOG0435\|consensus		876		98.82
PLN02959		1084	aminoacyl-tRNA ligase	98.74
PLN02959		1084	aminoacyl-tRNA ligase	98.68
PLN02563		963	aminoacyl-tRNA ligase	98.63
KOG0433\|consensus		937		98.49
KOG0434\|consensus		1070		98.32
PRK12300		897	leuS leucyl-tRNA synthetase; Reviewed	98.22
COG0060		933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	97.65
PRK05912		408	tyrosyl-tRNA synthetase; Validated	97.42
PRK13354		410	tyrosyl-tRNA synthetase; Provisional	97.4
PLN02486		383	aminoacyl-tRNA ligase	97.28
TIGR00233		328	trpS tryptophanyl-tRNA synthetase. This model repr	97.24
PRK08560		329	tyrosyl-tRNA synthetase; Validated	97.23
cd07375		117	Anticodon_Ia_like Anticodon-binding domain of clas	97.08
cd00805		269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	97.07
PRK01233		682	glyS glycyl-tRNA synthetase subunit beta; Validate	96.97
KOG1147\|consensus		712		96.87
TIGR00211		691	glyS glycyl-tRNA synthetase, tetrameric type, beta	96.84
PTZ00126		383	tyrosyl-tRNA synthetase; Provisional	96.76
KOG0435\|consensus		876		96.65
cd00395		273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	96.64
PRK12285		368	tryptophanyl-tRNA synthetase; Reviewed	96.61
PRK12284		431	tryptophanyl-tRNA synthetase; Reviewed	96.57
TIGR00234		377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	96.26
COG0751		691	GlyS Glycyl-tRNA synthetase, beta subunit [Transla	96.23
PRK14908		1000	glycyl-tRNA synthetase; Provisional	96.22
PTZ00348		682	tyrosyl-tRNA synthetase; Provisional	96.04
KOG0433\|consensus		937		95.83
cd07957		129	Anticodon_Ia_Met Anticodon-binding domain of methi	95.8
COG0162		401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	95.48
KOG0437\|consensus		1080		95.38
KOG0437\|consensus		1080		94.4
cd07958		117	Anticodon_Ia_Leu_BEm Anticodon-binding domain of b	93.84
PLN02886		389	aminoacyl-tRNA ligase	92.9
cd00806		280	TrpRS_core catalytic core domain of tryptophanyl-t	91.81
COG0180		314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	90.9
PF00579		292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	90.58
cd07959		117	Anticodon_Ia_Leu_AEc Anticodon-binding domain of a	90.45
PRK12556		332	tryptophanyl-tRNA synthetase; Provisional	87.31
cd07962		135	Anticodon_Ia_Val Anticodon-binding domain of valyl	83.49
PRK12282		333	tryptophanyl-tRNA synthetase II; Reviewed	80.48
PRK00927		333	tryptophanyl-tRNA synthetase; Reviewed	80.43
PF08264		153	Anticodon_1: Anticodon-binding domain of tRNA; Int	80.37

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=6.2e-126  Score=1029.81  Aligned_cols=561  Identities=37%  Similarity=0.570  Sum_probs=487.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcCCCHHHHHHHHHHHhhhccccccceeeE
Q psy5226           4 EEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQQKNYIKLIQSI   83 (582)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~l~~~l~~~~~~~~~i~~v   83 (582)
                      +|++.+++.+.++|.++... .....+.|+.|++++|||||||+||.|||.+|++|++||++|++.|..++    .|++|
T Consensus         2 ~i~~~l~~~i~~~l~~~~~~-~~~~~~~ve~~~~~~~GD~a~n~a~~laK~~~~~P~eiA~~i~~~l~~~~----~~~~v   76 (577)
T COG0018           2 NIKQLLKEKIAEALSAAGLD-VEEIEILVEPPKDPEHGDFATNIAFQLAKKLGKNPREIAEEIAEKLDTDE----IIEKV   76 (577)
T ss_pred             CHHHHHHHHHHHHHHHhhcc-ccccccceecCCCCCcccccchHHHHHhhhcCCCHHHHHHHHHHhccccC----cEeEE
Confidence            46778888888888887611 13356889999999999999999999999999999999999999998877    79999


Q ss_pred             EeecCcEEEEEeCchHHHHHHHHHHHc-CCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCe
Q psy5226          84 EIIKPGFINLKISSSIKQKIIKYILSS-GIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYK  162 (582)
Q Consensus        84 ~~~~~GfiN~~l~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~  162 (582)
                      +++|||||||++++.++++.+.+++.. ++.||....+++++|+||||||||+|||||||+|||||||+|+|+|+++||+
T Consensus        77 eiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~  156 (577)
T COG0018          77 EIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYD  156 (577)
T ss_pred             EEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCC
Confidence            999999999999999999998888776 6678888888999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccHHHHHHHHHHHcCccc-hhhhhHH--HhCCCHHHHH
Q psy5226         163 VTREFYYNDTGVQITNLALSVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIIS-KDRSINI--IANGKINDLK  239 (582)
Q Consensus       163 V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~--~e~~d~~~~~  239 (582)
                      |+|+||+||||+|||++++|+..++.+..+  ...+.++|.|+++.++++.+.+..+ .. ...++.+  .|.+|+.+  
T Consensus       157 V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~--~~~~~~~~lg~~y~~i~~~~~~~~~-~~~~~~~~~~~k~e~~d~~~--  231 (577)
T COG0018         157 VTRENYVNDWGTQIGMLALSYEKRGREALG--LTPEPDGYLGEYYVKIAKDLEEDPG-NDEEEAREEVEKLESGDEEA--  231 (577)
T ss_pred             eeEEeeECcHHHHHHHHHHHHHHhcccccc--CCCCcchHHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHhcCChHH--
Confidence            999999999999999999997666554332  1234588999999999988775433 11 2222222  27788654  


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCeeeeCCcEEEEec---cCCCCcceEEEc
Q psy5226         240 AIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTT---DYGDDKDRVVRK  316 (582)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~---~~g~~~~~vl~k  316 (582)
                      .+|+..++.++.+++++|++|||+||.|++||+.+.++++.++++.|+++|++|+++||+|+++.   ++|+++++||+|
T Consensus       232 ~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd~~~~vl~K  311 (577)
T COG0018         232 ELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGDDKDRVLQK  311 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCCCCCeEEEE
Confidence            67777789999999999999999999999999998889999999999999999999999999887   689999999999


Q ss_pred             cCCccccchhhHHHHHhhhhcCCceEEEEEecCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCC
Q psy5226         317 SNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRS  396 (582)
Q Consensus       317 sDG~~~Y~~~DiA~~~~r~~~~~d~~i~V~g~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~  396 (582)
                      ||||++|+|||||||+||++++||++|||||+||++|+.|++++++++  |+.++.....|.+++ +..+|+++|||||.
T Consensus       312 SDGt~lY~t~DIAy~~~K~~~~~d~~IyV~gadq~~~~~ql~~~l~~~--g~~~~~~~~~h~~~~-l~~~~~g~kmStR~  388 (577)
T COG0018         312 SDGTYLYFTRDIAYHLYKFERGFDKLIYVLGADQHGHFKQLKAVLELL--GYGPDKEVLLHQGVG-LVRGGEGVKMSTRA  388 (577)
T ss_pred             cCCCeeeehhHHHHHHHHHhcCCCEEEEEeCCcchhHHHHHHHHHHHh--cCCCccceEEEEEEe-eeECCCCccccccC
Confidence            999999999999999999999999999999999999999999999999  998875355666665 44566666999999


Q ss_pred             CCcccHHHHHHHHHhhh-----hcCCChhhHhhh--hcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHH
Q psy5226         397 GSYITIRNLIKWLSKTE-----SKNDSIEFREDL--IRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHA  469 (582)
Q Consensus       397 G~~v~l~dll~~~~~~~-----~~~~~~~~~~~~--~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~a  469 (582)
                      |++|+++|+++++.+..     ++ +..+  +++  .+|++|+||++|++++.++++|||+++++ +++||+||+|||||
T Consensus       389 G~~vtl~dllde~~era~~~~~~~-~~~~--~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~ls-fegNt~pYvQYA~A  464 (577)
T COG0018         389 GNVVTLDDLLDEAGERAPEEMEEK-EEKN--EEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALS-FEGNTAPYVQYAHA  464 (577)
T ss_pred             CceEEHHHHHHHHHHHhhhHhhhh-hhhh--HHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHh-ccCCCchhHHHHHH
Confidence            99999999999986531     12 2111  333  47999999999999999999999999999 55699999999999


Q ss_pred             HHHHHHHhcCCCCCcccccccCCCCCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccccCCC
Q psy5226         470 RIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKN  549 (582)
Q Consensus       470 R~~silrk~~~~~~~~~~~~d~~~l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~  549 (582)
                      |+|||+||+.....+.....+ ..+.++.|++|+..|++||+++++|+++++||.+|.||++||+.||+||+.|||++++
T Consensus       465 Ri~SIlrka~e~~~~~~~~~~-~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~Vl~~~  543 (577)
T COG0018         465 RICSILRKAGEDELDLSTEAD-ALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACPVLGAE  543 (577)
T ss_pred             HHHHHHHhccccccccccccc-hhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCCcCCCC
Confidence            999999999876443111122 3466788999999999999999999999999999999999999999999999999865


Q ss_pred             hh-hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy5226         550 IT-IKMARLALIYSIGQVLNNGLKLIGISAPTKM  582 (582)
Q Consensus       550 ~~-~~~~RL~L~~a~~~vL~~~L~lLGi~~~e~M  582 (582)
                      .+ ++.+||+||.+|++||++||+||||++||||
T Consensus       544 ~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~~e~M  577 (577)
T COG0018         544 NEELRAARLALVKATRQVLKNGLDLLGIEAPERM  577 (577)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCC
Confidence            54 8999999999999999999999999999999

>PLN02286 arginine-tRNA ligase	Back alignment and domain information

>PRK12451 arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00456 argS arginyl-tRNA synthetase	Back alignment and domain information

>PRK01611 argS arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>KOG4426\|consensus	Back alignment and domain information

>KOG1195\|consensus	Back alignment and domain information

>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases	Back alignment and domain information

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional	Back alignment and domain information

>PLN02946 cysteine-tRNA ligase	Back alignment and domain information

>PRK11893 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated	Back alignment and domain information

>TIGR00398 metG methionyl-tRNA synthetase	Back alignment and domain information

>PLN02224 methionine-tRNA ligase	Back alignment and domain information

>PRK12267 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK00133 metG methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00435 cysS cysteinyl-tRNA synthetase	Back alignment and domain information

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12268 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02610 probable methionyl-tRNA synthetase	Back alignment and domain information

>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases	Back alignment and domain information

>PRK12418 cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	Back alignment and domain information

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>KOG2007\|consensus	Back alignment and domain information

>KOG0436\|consensus	Back alignment and domain information

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase	Back alignment and domain information

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases	Back alignment and domain information

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases	Back alignment and domain information

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases	Back alignment and domain information

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PRK13208 valS valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases	Back alignment and domain information

>TIGR00422 valS valyl-tRNA synthetase	Back alignment and domain information

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete	Back alignment and domain information

>PRK05729 valS valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases	Back alignment and domain information

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>smart00836 DALR_1 DALR anticodon binding domain	Back alignment and domain information

>PRK14900 valS valyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>PLN02943 aminoacyl-tRNA ligase	Back alignment and domain information

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family	Back alignment and domain information

>TIGR00392 ileS isoleucyl-tRNA synthetase	Back alignment and domain information

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional	Back alignment and domain information

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02882 aminoacyl-tRNA ligase	Back alignment and domain information

>PLN02381 valyl-tRNA synthetase	Back alignment and domain information

>PLN02843 isoleucyl-tRNA synthetase	Back alignment and domain information

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional	Back alignment and domain information

>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family	Back alignment and domain information

>PRK00390 leuS leucyl-tRNA synthetase; Validated	Back alignment and domain information

>PRK12558 glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional	Back alignment and domain information

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>KOG1247\|consensus	Back alignment and domain information

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family	Back alignment and domain information

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PLN02627 glutamyl-tRNA synthetase	Back alignment and domain information

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase	Back alignment and domain information

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase	Back alignment and domain information

>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase	Back alignment and domain information

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase	Back alignment and domain information

>KOG0432\|consensus	Back alignment and domain information

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase	Back alignment and domain information

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed	Back alignment and domain information

>PLN03233 putative glutamate-tRNA ligase; Provisional	Back alignment and domain information

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family	Back alignment and domain information

>PLN02907 glutamate-tRNA ligase	Back alignment and domain information

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PTZ00402 glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK05347 glutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional	Back alignment and domain information

>KOG1149\|consensus	Back alignment and domain information

>PLN02859 glutamine-tRNA ligase	Back alignment and domain information

>PLN02563 aminoacyl-tRNA ligase	Back alignment and domain information

>TIGR00440 glnS glutaminyl-tRNA synthetase	Back alignment and domain information

>PTZ00437 glutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>KOG0435\|consensus	Back alignment and domain information

>PLN02959 aminoacyl-tRNA ligase	Back alignment and domain information

>PLN02959 aminoacyl-tRNA ligase	Back alignment and domain information

>PLN02563 aminoacyl-tRNA ligase	Back alignment and domain information

>KOG0433\|consensus	Back alignment and domain information

>KOG0434\|consensus	Back alignment and domain information

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK05912 tyrosyl-tRNA synthetase; Validated	Back alignment and domain information

>PRK13354 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02486 aminoacyl-tRNA ligase	Back alignment and domain information

>TIGR00233 trpS tryptophanyl-tRNA synthetase	Back alignment and domain information

>PRK08560 tyrosyl-tRNA synthetase; Validated	Back alignment and domain information

>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains	Back alignment and domain information

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase	Back alignment and domain information

>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated	Back alignment and domain information

>KOG1147\|consensus	Back alignment and domain information

>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit	Back alignment and domain information

>PTZ00126 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>KOG0435\|consensus	Back alignment and domain information

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase	Back alignment and domain information

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00234 tyrS tyrosyl-tRNA synthetase	Back alignment and domain information

>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK14908 glycyl-tRNA synthetase; Provisional	Back alignment and domain information

>PTZ00348 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>KOG0433\|consensus	Back alignment and domain information

>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases	Back alignment and domain information

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0437\|consensus	Back alignment and domain information

>KOG0437\|consensus	Back alignment and domain information

>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases	Back alignment and domain information

>PLN02886 aminoacyl-tRNA ligase	Back alignment and domain information

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase	Back alignment and domain information

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases	Back alignment and domain information

>PRK12556 tryptophanyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases	Back alignment and domain information

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed	Back alignment and domain information

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		582
3fnr_A		464	Crystal Structure Of Putative Arginyl T-Rna Synthet		2e-54
2zue_A		629	Crystal Structure Of Pyrococcus Horikoshii Arginyl-		6e-31
1bs2_A		607	Yeast Arginyl-Trna Synthetase Length = 607		2e-20
1iq0_A		592	Thermus Thermophilus Arginyl-Trna Synthetase Length		3e-18

>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase From Campylobacter Jejuni Length = 464

Back alignment and structure

Iteration: 1

Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 224/461 (48%), Gaps = 37/461 (8%) Query: 123 KKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALS 182 + L+E+VSANPTGPLHIGH R GD L+ L GYK E+Y ND G QI L LS Sbjct: 30 ESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLS 89 Query: 183 VQARAKAIFLGKST-WPDTAYNGEYITDXXXXXXXXXXXXXXXXXXXXXANGKINDLKAI 241 + K L ++ +P+ Y GEYI D ++ ++ Sbjct: 90 ILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSE----------ENIPSL 139 Query: 242 RDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDGALWL 301 D++ + +L+ +K D+Y E S Y +L + L + Y ++G +WL Sbjct: 140 ADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLES--LKEHKGIYEQEGKIWL 197 Query: 302 RTTDYGDDKDRVVRKSNGDFTYFVSDIAYHIFKWERGFIQAINIQGDDHQGTITRVKAGL 361 ++ GD+KDRV+ + +G TY +DI YH K RG+ + INI G DH G I R+KA + Sbjct: 198 ASSQKGDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAM 257 Query: 362 QAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTESKNDSIEF 421 + +G ++ IL +MV+++K+G+ K+SKR+G++I + +++ D I Sbjct: 258 EF--LGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVV----------DEI-- 303 Query: 422 REDLIRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGX 481 G D +R+ +S+K DT FDI K NPVYYI YAHARI + + G Sbjct: 304 ------GSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKK 357 Query: 482 XXXXXXXXXXXXXNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYN 541 + ++LL + N VL ++ + + YL++LA H +YN Sbjct: 358 IDDVMKADLQSL--NQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYN 415 Query: 542 TERILVKNITIKMARLALIYSIGQVLNNGLKLIGISAPTKM 582 +++ + +L + ++ + L+GI A KM Sbjct: 416 ENKVVGSANENDLLKLFSLVALS--IKTAFSLMGIEAKNKM 454

PyMOL of 3fnr

>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna Synthetase Complexed With Trna(Arg) And An Atp Analog (Anp) Length = 629

Back alignment and structure

>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase Length = 607

Back alignment and structure

>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase Length = 592

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		582
3fnr_A		464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	0.0
2zue_A		629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	1e-128
1iq0_A		592	Arginyl-tRNA synthetase; riken structural genomics	1e-112
1f7u_A		607	Arginyl-tRNA synthetase; RNA-protein complex, amin	2e-77
3gdz_A		109	Arginyl-tRNA synthetase; klebsiella pneumoniae sub	4e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Length = 464	Back alignment and structure

 Score =  592 bits (1529), Expect = 0.0
 Identities = 149/491 (30%), Positives = 242/491 (49%), Gaps = 38/491 (7%)

Query: 93  LKISSSIKQKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDIL 152
           + +S +   ++    L++   F +      +  L+E+VSANPTGPLHIGH R    GD L
Sbjct: 1   MSLSKTFLNELANQALTNPNDFTKGE-KKQESFLLEYVSANPTGPLHIGHARGAVFGDTL 59

Query: 153 SSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKS-TWPDTAYNGEYITDIA 211
           + L    GYK   E+Y ND G QI  L LS+    K   L ++  +P+  Y GEYI D+A
Sbjct: 60  TRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLA 119

Query: 212 KCFLKKKKIISKDRSINIIANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLES 271
           K   +K                   ++ ++ D++   +      +L+   +K D+Y  E 
Sbjct: 120 KEAFEKFGKEFFSE----------ENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSER 169

Query: 272 SLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDRVVRKSNGDFTYFVSDIAYH 331
           S Y    ++   + L +    Y ++G +WL ++  GD+KDRV+ + +G  TY  +DI YH
Sbjct: 170 SYYD--ALNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVIIREDGRGTYLAADIVYH 227

Query: 332 IFKWERGFIQAINIQGDDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVK 391
             K  RG+ + INI G DH G I R+KA ++   +G  ++    IL +MV+++K+G+  K
Sbjct: 228 KDKMSRGYGKCINIWGADHHGYIPRMKAAMEF--LGFDSNNLEIILAQMVSLLKDGEPYK 285

Query: 392 ISKRSGSYITIRNLIKWLSKTESKNDSIEFREDLIRGRDLMRFFLISRKSDTDFIFDIDL 451
           +SKR+G++I + +++  +                  G D +R+  +S+K DT   FDI  
Sbjct: 286 MSKRAGNFILMSDVVDEI------------------GSDALRYIFLSKKCDTHLEFDISD 327

Query: 452 ALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSLISIKDLSSLNTEKELSLLVKLSNYPE 511
             K    NPVYYI YAHARI  +  + G     ++   DL SL  +  ++LL +  N   
Sbjct: 328 LQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKA-DLQSL-NQDGVNLLFEALNLKA 385

Query: 512 VLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGL 571
           VL ++ +      +  YL++LA   H +YN  +++          L L   +   +    
Sbjct: 386 VLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANE--NDLLKLFSLVALSIKTAF 443

Query: 572 KLIGISAPTKM 582
            L+GI A  KM
Sbjct: 444 SLMGIEAKNKM 454

PyMOL of 3fnr

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Length = 629	Back alignment and structure

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Length = 592	Back alignment and structure

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Length = 607	Back alignment and structure

>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp} Length = 109	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		582
2zue_A		629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
1f7u_A		607	Arginyl-tRNA synthetase; RNA-protein complex, amin	100.0
3fnr_A		464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	100.0
1iq0_A		592	Arginyl-tRNA synthetase; riken structural genomics	100.0
4dlp_A		536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	100.0
3kfl_A		564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	100.0
1li5_A		461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	100.0
3h99_A		560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	100.0
2x1l_A		524	Methionyl-tRNA synthetase; nucleotide-binding, pro	100.0
2csx_A		497	Methionyl-tRNA synthetase; ligase, riken structura	100.0
2d5b_A		500	Methionyl-tRNA synthetase; rossmann fold, class 1A	100.0
3tqo_A		462	Cysteinyl-tRNA synthetase; protein synthesis, liga	100.0
3c8z_A		414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	100.0
1rqg_A		722	Methionyl-tRNA synthetase; translation, dimerizati	100.0
3sp1_A		501	Cysteinyl-tRNA synthetase; structural genomics, se	100.0
3u1f_A		542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	99.98
1irx_A		523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	99.94
1wkb_A		810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	99.94
1ile_A		821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	99.91
1gax_A		862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	99.91
1ffy_A		917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	99.91
2o5r_A		481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	99.9
4arc_A		880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	99.89
3al0_C		592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	99.89
2v0c_A		878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	99.88
3gdz_A		109	Arginyl-tRNA synthetase; klebsiella pneumoniae sub	99.85
1wz2_A		967	Leucyl-tRNA synthetase; ligase, riken structural g	99.81
1nzj_A		298	Hypothetical protein YADB; Zn cluster, glutamyl T-	99.81
3afh_A		488	Glutamyl-tRNA synthetase 2; protein-substrate comp	99.79
2cfo_A		492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	99.71
4g6z_A		490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	99.7
1j09_A		468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	99.67
2ja2_A		498	Glutamyl-tRNA synthetase; non-discriminating gluta	99.64
3aii_A		553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	99.63
4gri_A		512	Glutamate--tRNA ligase; structural genomics, seatt	99.6
1qtq_A		553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	99.52
2hz7_A		851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	99.52
2cyb_A		323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	98.23
2dlc_X		394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	97.92
1n3l_A		372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	97.66
2cya_A		364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	97.34
2g36_A		340	Tryptophanyl-tRNA synthetase; TM0492, structural g	97.04
2el7_A		337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	96.95
3vgj_A		373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	96.73
2zp1_A		314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	96.6
1yi8_B		351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	96.57
2j5b_A		348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	96.57
3tzl_A		322	Tryptophanyl-tRNA synthetase; structural genomics,	96.51
3p0j_A		690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	96.29
2yy5_A		348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	96.24
3a04_A		372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	96.0
2pid_A		356	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	92.41
2yxn_A		322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	91.67
2ip1_A		432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	90.64
2jan_A		432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	90.3
1r6u_A		437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	89.59
1r6t_A		477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	89.37
1h3f_A		432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	89.35
3i05_A		395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	89.2
3hv0_A		393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	88.81
3tze_A		406	Tryptophanyl-tRNA synthetase; structural genomics,	88.48
3jxe_A		392	Tryptophanyl-tRNA synthetase; adenosine triphospha	88.14
3hzr_A		386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	85.86
1y42_X		392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	85.8
1jil_A		420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	85.14
2ts1_A		419	Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30	84.71
3foc_A		451	Tryptophanyl-tRNA synthetase; structural genomics,	81.1

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A	Back alignment and structure

Probab=100.00  E-value=8.9e-112  Score=943.96  Aligned_cols=562  Identities=27%  Similarity=0.413  Sum_probs=473.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHhhhhcCCCCceeEEcCCCCCCccccchhHHHHHHhcCCCHHHHHHHHHHHhhh--cccccc
Q psy5226           1 MLLEEKQRIIKLFNLALKPLLIKTNIVPTIILEYPRHASHGDISCNISMQISKKLQINSYKLAKIIAKNLIQ--QKNYIK   78 (582)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~~~p~~ia~~l~~~l~~--~~~~~~   78 (582)
                      |++++++.|.+.+.+++.++..+  ....+.|+.|++++|||||||+||.|||.+|++|++||++|+++|+.  ++    
T Consensus         1 m~~~~~~~i~~~~~~a~~~~~~~--~~~~~~v~~~~~~~~GD~~~n~a~~lak~~~~~P~~iA~~i~~~l~~~~~~----   74 (629)
T 2zue_A            1 MLMEIRESVKERIEEIIKEIAPQ--WEGEIELKETPDPKLGDFGTPIAFKLAKLLKRPPIEIAEKIVEKLKLNLPE----   74 (629)
T ss_dssp             -CCTTHHHHHHHHHHHHHHHCTT--CCCCCCCEECSSGGGCSEEECHHHHHHHHHTSCHHHHHHHHHHHHTTSCCT----
T ss_pred             CcHHHHHHHHHHHHHHHHhcCcc--ccccceeeCCCCCCCCceeHHHHHHHHHHcCCCHHHHHHHHHHHhhhccCC----
Confidence            67778888999999988876332  22356689999999999999999999999999999999999999975  55    


Q ss_pred             ceeeEEeecCcEEEEEeCchHH-HHHHHHHHHcCCCCCCCCCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHH
Q psy5226          79 LIQSIEIIKPGFINLKISSSIK-QKIIKYILSSGIKFGQSNIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFI  157 (582)
Q Consensus        79 ~i~~v~~~~~GfiN~~l~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~  157 (582)
                      .|++|+++| |||||+|+++++ ..++..++..+++||..+.+++++|+||||||||+||+||||+||+||||+|+|+|+
T Consensus        75 ~i~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~  153 (629)
T 2zue_A           75 GIKDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILR  153 (629)
T ss_dssp             TEEEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHH
Confidence            799999999 999999999954 567788888899999887788999999999999999999999999999999999999


Q ss_pred             HcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhc-c--------CCCCCCCCCCCcccHHHHHHHHHHHcCccchhhhhH
Q psy5226         158 SQGYKVTREFYYNDTGVQITNLALSVQARAKAIF-L--------GKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSIN  228 (582)
Q Consensus       158 ~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~-~--------~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~  228 (582)
                      ++||+|+++||+||||+|||+++++.. +++... .        .....|.++|+|.+|.+.++.+.. .+++.++.++.
T Consensus       154 ~~G~~V~~~~~i~D~G~Q~~~l~~~~~-~~g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~-~~~~~~~~~~~  231 (629)
T 2zue_A          154 FLGYEVEVQNYIDDLGIQFAQVYWGYL-RLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLED-NPELENEIRDI  231 (629)
T ss_dssp             HTTCEEEEEEEECTTSHHHHHHHHHHH-HCHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHH-CGGGHHHHHHH
T ss_pred             HcCCCceEEecccchhHHHHHHHHHHH-HhCCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhc-CchHHHHHHHH
Confidence            999999999999999999999998743 332210 0        000225567899999888877653 34454444433


Q ss_pred             HH--hCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccccccccccccCCChHHHHHHHHHcCCee-----eeCCcEEE
Q psy5226         229 II--ANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTY-----YKDGALWL  301 (582)
Q Consensus       229 ~~--e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~ES~~~~~~~i~~~i~~L~~~g~~~-----~~~Ga~~~  301 (582)
                      +.  |.+| ..|+.++    +.+++.|+++|++|||+||.|.+||+.++.+.++++++.|+++|++|     +++|++||
T Consensus       232 ~~~~e~gd-~~~~~~~----~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v  306 (629)
T 2zue_A          232 MKKLESGE-LYGRKLA----EEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVM  306 (629)
T ss_dssp             HHHHHHSS-SCCHHHH----HHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEE
T ss_pred             HHhccccc-HHHHHHH----HHHHHHHHHHHHHcCCccccccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEE
Confidence            32  5666 4566555    66778899999999999999999998877889999999999999999     88999999


Q ss_pred             EeccCCCCcc---eEEEccCCccccchhhHHHHHhh---------hh-c-------------------CCceEEEEEecC
Q psy5226         302 RTTDYGDDKD---RVVRKSNGDFTYFVSDIAYHIFK---------WE-R-------------------GFIQAINIQGDD  349 (582)
Q Consensus       302 ~~~~~g~~~~---~vl~ksDG~~~Y~~~DiA~~~~r---------~~-~-------------------~~d~~i~V~g~d  349 (582)
                      ++++||++++   ++++||||+++|+++|+||++||         .. .                   ++|++|||||.+
T Consensus       307 ~~~~~g~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~IyV~g~~  386 (629)
T 2zue_A          307 DLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAE  386 (629)
T ss_dssp             ECTTTCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEEEEEGG
T ss_pred             ECcccCCccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcEEEEEeCc
Confidence            9999998877   89999999999999999999995         43 1                   789999999999


Q ss_pred             cchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCC--CcccHHHHHHHHHh-----hhhcCCCh--h
Q psy5226         350 HQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSG--SYITIRNLIKWLSK-----TESKNDSI--E  420 (582)
Q Consensus       350 h~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G--~~v~l~dll~~~~~-----~~~~~~~~--~  420 (582)
                      |++||.+++++++++  |+++....+.|++|+++..+|+  |||||+|  |+|+++||++++.+     +.++++..  +
T Consensus       387 q~~~~~~l~~~l~~l--G~~~~~~~~~h~~~g~V~~~~~--KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~  462 (629)
T 2zue_A          387 QKHPQLAIKYALQLL--GFEDAAANLYHLAYEHVERPEG--KFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDE  462 (629)
T ss_dssp             GHHHHHHHHHHHHHT--TCHHHHHTEEEEEECCEEBTTB--CCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHH
T ss_pred             HhhHHHHHHHHHHHc--CCCCCCCeEEEEEeeeEEcCCC--cccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchh
Confidence            999999999999999  9975212456664443333666  9999999  99999999999754     24566543  3


Q ss_pred             hHhhh--hcchhhHHHHHhccCCCCcccccHHHHhhhcCCCchHHHHHHHHHHHHHHHhcCCCCCcc-----cccccCCC
Q psy5226         421 FREDL--IRGRDLMRFFLISRKSDTDFIFDIDLALKRSDENPVYYIQYAHARIFSLLNQWGGDKKSL-----ISIKDLSS  493 (582)
Q Consensus       421 ~~~~~--~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~-----~~~~d~~~  493 (582)
                      +.+++  .+|++|+||++|+.++.++++|||+.+++ .++|++||+||+|+|+|||+||++..+..+     ....++ .
T Consensus       463 ~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~-~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~-~  540 (629)
T 2zue_A          463 EKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLN-FEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADF-T  540 (629)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSC-CSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCC-S
T ss_pred             hHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHH-HhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccc-c
Confidence            44444  37999999999999999999999999999 577899999999999999999986544210     012233 2


Q ss_pred             CCCHHHHHHHHHHhchHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhcccccCCChhhhHHHHHHHHHHHHHHHHHHHh
Q psy5226         494 LNTEKELSLLVKLSNYPEVLVNSVKDLCPHYVAFYLRDLAKELHGYYNTERILVKNITIKMARLALIYSIGQVLNNGLKL  573 (582)
Q Consensus       494 l~~~~e~~L~~~l~~f~~~v~~a~~~~~p~~l~~yl~~La~~~n~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~~L~l  573 (582)
                      +.++.|++|+..|.+||+++.+|+++++||.+|+||++||+.||+||++|||+.++++++.+||+||.+|++||++||.|
T Consensus       541 l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~l  620 (629)
T 2zue_A          541 KLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYL  620 (629)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999877777889999999999999999999


Q ss_pred             cCCCCCCCC
Q psy5226         574 IGISAPTKM  582 (582)
Q Consensus       574 LGi~~~e~M  582 (582)
                      |||+|||||
T Consensus       621 LGI~ape~M  629 (629)
T 2zue_A          621 MGIEAPERM  629 (629)
T ss_dssp             TTCCCCSCC
T ss_pred             cCCCccccC
Confidence            999999999

PyMOL of 2zue

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*	Back alignment and structure

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}	Back alignment and structure

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1	Back alignment and structure

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}	Back alignment and structure

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}	Back alignment and structure

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B	Back alignment and structure

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A	Back alignment and structure

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*	Back alignment and structure

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*	Back alignment and structure

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A	Back alignment and structure

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}	Back alignment and structure

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}	Back alignment and structure

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1	Back alignment and structure

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}	Back alignment and structure

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*	Back alignment and structure

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1	Back alignment and structure

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}	Back alignment and structure

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*	Back alignment and structure

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A	Back alignment and structure

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*	Back alignment and structure

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}	Back alignment and structure

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*	Back alignment and structure

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}	Back alignment and structure

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*	Back alignment and structure

>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}	Back alignment and structure

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}	Back alignment and structure

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*	Back alignment and structure

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*	Back alignment and structure

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}	Back alignment and structure

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}	Back alignment and structure

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A	Back alignment and structure

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A	Back alignment and structure

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}	Back alignment and structure

>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}	Back alignment and structure

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A	Back alignment and structure

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}	Back alignment and structure

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}	Back alignment and structure

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*	Back alignment and structure

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}	Back alignment and structure

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}	Back alignment and structure

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}	Back alignment and structure

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}	Back alignment and structure

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*	Back alignment and structure

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*	Back alignment and structure

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}	Back alignment and structure

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*	Back alignment and structure

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*	Back alignment and structure

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}	Back alignment and structure

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*	Back alignment and structure

>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*	Back alignment and structure

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*	Back alignment and structure

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*	Back alignment and structure

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}	Back alignment and structure

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A	Back alignment and structure

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A	Back alignment and structure

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*	Back alignment and structure

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0	Back alignment and structure

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0	Back alignment and structure

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}	Back alignment and structure

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}	Back alignment and structure

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}	Back alignment and structure

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A	Back alignment and structure

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*	Back alignment and structure

>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A	Back alignment and structure

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		582
d1iq0a2		370	c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS	2e-50
d1f7ua2		348	c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgR	3e-46
d1irxa2		317	c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {	5e-30
d1f7ua1		124	a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgR	1e-29
d1iq0a1		126	a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgR	2e-25
d1li5a2		315	c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR	3e-11
d2d5ba2		348	c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR	3e-09
d1iq0a3		96	d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS),	1e-08
d1pfva2		350	c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe	2e-08
d1ivsa4		425	c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase	2e-07
d1f7ua3		134	d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS)	6e-07
d1ffya3		450	c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe	7e-06
d1rqga2		361	c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe	2e-05
d1h3na3		494	c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas	3e-05
d1ilea3		452	c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe	4e-05
d1j09a2		305	c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS	6e-05

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 370	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  176 bits (446), Expect = 2e-50
 Identities = 60/372 (16%), Positives = 124/372 (33%), Gaps = 50/372 (13%)

Query: 122 NKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLAL 181
              +L+E  S NP   LH+GH R  A+GD ++ +    G +V    Y +DTG Q      
Sbjct: 6   PGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLF 65

Query: 182 SVQARAKAIFLGKSTWPDTAYNGEYITDIAKCFLKKKKIISKDRSINIIANGKINDLKAI 241
           +++              D      Y+        ++ +   ++    +       ++  I
Sbjct: 66  ALRHYGLTWD--GKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRI 123

Query: 242 RDFSVAYLRREQDIDLKIFGVKFDNYCLESSLYKTGKVSLVTKLLIQSGKTYYKDG---- 297
                      Q   +     ++D    ES + + G +     LL QS   +        
Sbjct: 124 LLA--------QMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYA 175

Query: 298 -ALWLRTTDYGD---DKDRVVRKSNGDFTYFVSDIAYHIFK-----------WERGFIQA 342
            AL +  +       D   V+ +SNG  TY+  DIA+  +K           +E  +   
Sbjct: 176 GALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPG 235

Query: 343 INIQGDDHQGTITRVKAGLQAINIGIP--------------NDYPNYILHKMVTVIKNGK 388
           +     + +    + +  +  +++                         H +       +
Sbjct: 236 LRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLE 295

Query: 389 EVKISKRSGSYITIRNLIKWLSKT-----ESKNDSIEFREDLIR--GRDLMRFFLISRKS 441
             ++S R G  +++  +++  ++      E KN     +E+  R      +RF ++  + 
Sbjct: 296 GRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEP 355

Query: 442 DTDFIFDIDLAL 453
                F    AL
Sbjct: 356 KKQIDFRYQEAL 367

PyMOL of d1iq0a2

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 348	Back information, alignment and structure

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317	Back information, alignment and structure

>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124	Back information, alignment and structure

>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 126	Back information, alignment and structure

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315	Back information, alignment and structure

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348	Back information, alignment and structure

>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]} Length = 96	Back information, alignment and structure

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350	Back information, alignment and structure

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425	Back information, alignment and structure

>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134	Back information, alignment and structure

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450	Back information, alignment and structure

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361	Back information, alignment and structure

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494	Back information, alignment and structure

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452	Back information, alignment and structure

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Length = 305	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		582
d1f7ua2		348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	100.0
d1iq0a2		370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	100.0
d1li5a2		315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	99.98
d1f7ua1		124	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	99.98
d1iq0a1		126	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	99.97
d1irxa2		317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	99.97
d2d5ba2		348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	99.95
d1pfva2		350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	99.95
d1ivsa4		425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	99.93
d1ilea3		452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	99.9
d1ffya3		450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	99.89
d1rqga2		361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	99.88
d1iq0a3		96	Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit	99.73
d1j09a2		305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	99.66
d1h3na3		494	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	99.65
d1f7ua3		134	Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit	99.53
d1nzja_		286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	99.5
d1gtra2		331	Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co	99.28
d1rqga1		210	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	97.65
d1h3fa1		343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	97.56
d1pfva1		162	Methionyl-tRNA synthetase (MetRS) {Escherichia col	97.28
d1n3la_		339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	97.13
d2d5ba1		152	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	97.08
d1jila_		323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	96.28
d1r6ta2		386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	96.25
d1j1ua_		306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	96.12

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.9e-67  Score=544.63  Aligned_cols=325  Identities=21%  Similarity=0.259  Sum_probs=256.2

Q ss_pred             CCCCCcEEEEEEecCCCCCCCccchhhhhHHHHHHHHHHHHcCCeeEEEEeecCchhHHHHHHHHHHHHHHhhccCCCCC
Q psy5226         118 NIGSNKKILIEFVSANPTGPLHIGHGRQCAIGDILSSLFISQGYKVTREFYYNDTGVQITNLALSVQARAKAIFLGKSTW  197 (582)
Q Consensus       118 ~~~~~~~v~Ve~sspN~~k~lHiGHlRs~iiGd~laril~~~G~~V~~~~~i~D~G~q~~~l~~~~~~~~~~~~~~~~~~  197 (582)
                      +.+++++|+||||||||+|||||||+||+||||+|+|+|+++||+|+|+||+||||+||+++++|+ .+|.+..+.. . 
T Consensus         3 ~~~~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~-~~~~~~~~~~-~-   79 (348)
T d1f7ua2           3 KLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGF-ERYGNEEALV-K-   79 (348)
T ss_dssp             CCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-HHHCCHHHHH-H-
T ss_pred             cCCCCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHH-HHhccccccc-c-
Confidence            357889999999999999999999999999999999999999999999999999999999999984 3442211000 0 


Q ss_pred             CCCCCCcccHHHHHHHHHHHcCcc------chhhhhHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCccccccc
Q psy5226         198 PDTAYNGEYITDIAKCFLKKKKII------SKDRSINII--ANGKINDLKAIRDFSVAYLRREQDIDLKIFGVKFDNYCL  269 (582)
Q Consensus       198 ~~~~~~g~~i~~~~~~~~~~~~~~------~~~~~~~~~--e~~d~~~~~~~~~~~~~~~~~~~~~~~~~lgI~fD~~~~  269 (582)
                      ....+.+..+..+.+.+.+.....      ..+..+.+.  +.++++.+ .+|+.+++.+++.++++|++|||+||.|.+
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~  158 (348)
T d1f7ua2          80 DPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEAL-KIWKRFREFSIEKYIDTYARLNIKYDVYSG  158 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred             ccchhHHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            000112223334444443321111      111111111  67787543 455556688889999999999999999999


Q ss_pred             ccccccCCChHHHHHHHHHcCCeeeeCCcEEEEeccCCCCcce-EEEccCCccccchhhHHHHHhhhhc-CCceEEEEEe
Q psy5226         270 ESSLYKTGKVSLVTKLLIQSGKTYYKDGALWLRTTDYGDDKDR-VVRKSNGDFTYFVSDIAYHIFKWER-GFIQAINIQG  347 (582)
Q Consensus       270 ES~~~~~~~i~~~i~~L~~~g~~~~~~Ga~~~~~~~~g~~~~~-vl~ksDG~~~Y~~~DiA~~~~r~~~-~~d~~i~V~g  347 (582)
                      ||+++..+ ..++++.|.++|++++++|++|++++++|++.++ +++||||++||+|+|||||.||+++ +||++|||||
T Consensus       159 Es~~~~~~-~~~v~~~L~~~~~~~~~~ga~~~~~~~~g~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~D~~I~V~g  237 (348)
T d1f7ua2         159 ESQVSKES-MLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIA  237 (348)
T ss_dssp             GGGCCHHH-HHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred             cccccccc-hHHHHHHHHhhccccccCCcccccchhhccccccceeccCCCccceecchHHhhhhhhhccCCCEEEEecc
Confidence            99988644 5689999999999999999999999999987766 5689999999999999999999987 9999999999


Q ss_pred             cCcchhHHHHHHHHHHHHcCCCCCCCcEEEEEEEEEeeCCeeeecccCCCCcccHHHHHHHHHhhh----hcC----CCh
Q psy5226         348 DDHQGTITRVKAGLQAINIGIPNDYPNYILHKMVTVIKNGKEVKISKRSGSYITIRNLIKWLSKTE----SKN----DSI  419 (582)
Q Consensus       348 ~dh~~~~~~~~~~l~~l~~G~~~~~~~~~~~~~v~l~~~G~~~KMSkr~G~~v~l~dll~~~~~~~----~~~----~~~  419 (582)
                      +||++||++++++++++  |+++.. .+.|+.++.      +.|||||+|++|+|+|||+++.+..    .++    .+.
T Consensus       238 ~dq~~~~~~l~~~l~~l--g~~~~~-~~~h~~~g~------v~kMStR~G~~i~l~dll~e~~~~a~~~~~~~~~~~~~~  308 (348)
T d1f7ua2         238 SQQDLHAAQFFEILKQM--GFEWAK-DLQHVNFGM------VQGMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQI  308 (348)
T ss_dssp             GGGHHHHHHHHHHHHHT--TCGGGG-GEEEECCCC------EESCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTC
T ss_pred             cccchhhhhHHHHHHHh--CCCccc-ceeeecCCc------cccccccCCCceEHHHHHHHHHHHHHHHHHhccCcCCCh
Confidence            99999999999999999  997653 677777654      3489999999999999999986531    111    222


Q ss_pred             hhHhhh--hcchhhHHHHHhccCCCCcccccHHHHhhhcC
Q psy5226         420 EFREDL--IRGRDLMRFFLISRKSDTDFIFDIDLALKRSD  457 (582)
Q Consensus       420 ~~~~~~--~~~~~airy~~l~~~~~~~~~F~~~~~~~~~~  457 (582)
                      ++.+++  .+|++|+||++|+++|.++++|||+++++ ++
T Consensus       309 ~~~~~ia~~vgv~ai~y~~L~~~~~~~~~Fd~d~~l~-~e  347 (348)
T d1f7ua2         309 EHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLS-FE  347 (348)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHC-CS
T ss_pred             hhHHHHHHHhhHHheehhhhhcCCCCCCEECHHHhcC-CC
Confidence            333444  37999999999999999999999999998 44

PyMOL of d1f7ua2

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure