Psyllid ID: psy5228

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
HHHccccEEEEEEEEEEcHHHHHHHccccccEEEccccEEEEcccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccEEEEHHHHHHHccccEEccccc
Coil and Loop (DISEMBL)
MQFIKPNVSTLCIGLAASMGAFLLAsgtkgkrfslpnsrimihqplggaqgqasDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK
Flexible Loop (DISEMBL)
MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQplggaqgqaSDIEIQAREILYLRQRLNEIlsektghsvkkisqdtdrdNFMSAKMAMEYCLIDKILKQRK
Low Complexity Region (SEG)
MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK
Disordered region (IsUnstruct)
*****PNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEIL**********************AKMAMEYCLIDKIL****
Disordered Region (DISOPRED)
MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ**
Disordered Region (DISEMBL)
MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK
Disordered Region (DISPRO)
MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK***
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
A6SY74	210	ATP-dependent Clp proteas	yes	N/A	0.991	0.538	0.814	2e-50
Q8XYP7	217	ATP-dependent Clp proteas	yes	N/A	0.991	0.520	0.778	2e-48
B3R4W1	216	ATP-dependent Clp proteas	yes	N/A	0.991	0.523	0.778	4e-48
Q0KBK4	216	ATP-dependent Clp proteas	yes	N/A	0.991	0.523	0.778	4e-48
Q1LM62	216	ATP-dependent Clp proteas	yes	N/A	0.991	0.523	0.761	3e-47
Q472D3	216	ATP-dependent Clp proteas	yes	N/A	0.991	0.523	0.752	4e-47
Q39FE8	217	ATP-dependent Clp proteas	yes	N/A	0.991	0.520	0.743	9e-47
A1K783	212	ATP-dependent Clp proteas	yes	N/A	0.991	0.533	0.752	1e-46
Q0BEF6	217	ATP-dependent Clp proteas	yes	N/A	0.991	0.520	0.743	1e-46
A0K847	217	ATP-dependent Clp proteas	yes	N/A	0.991	0.520	0.743	1e-46

>sp|A6SY74|CLPP_JANMA ATP-dependent Clp protease proteolytic subunit OS=Janthinobacterium sp. (strain Marseille) GN=clpP PE=3 SV=1

 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 103/113 (91%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKPNVSTLC GLAASMGAFLLA+G KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA
Sbjct: 97  MQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 156

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN IL+E+TG SV++I++DTDRDNFMSA  A+ Y +IDK+L  R
Sbjct: 157 REILYLRERLNAILAERTGKSVEEIAKDTDRDNFMSADAAVTYGMIDKVLATR 209

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.
Janthinobacterium sp. (strain Marseille) (taxid: 375286)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 9EC: 2

>sp|Q8XYP7|CLPP_RALSO ATP-dependent Clp protease proteolytic subunit OS=Ralstonia solanacearum (strain GMI1000) GN=clpP PE=3 SV=1

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 101/113 (89%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQF+KP+VSTLC+G+AASMGAFLLA+G KGKR++LPNSRIMIHQPLGGA+GQASDIEIQA
Sbjct: 103 MQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEIQA 162

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN ILSE TG  V KI++DTDRDNFMS   A EY LIDK+L +R
Sbjct: 163 REILYLRERLNTILSEVTGQPVDKIARDTDRDNFMSGDQAKEYGLIDKVLARR 215

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|B3R4W1|CLPP_CUPTR ATP-dependent Clp protease proteolytic subunit OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=clpP PE=3 SV=1

 Score =  189 bits (480), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 102/113 (90%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VSTLC+G+AASMGAFLLA+G KGKR +LPNSRIMIHQPLGGA+GQASDIEIQA
Sbjct: 103 MQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQA 162

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN ILSE TG  V+KI++DTDRDNFMS   A++Y LIDK+L +R
Sbjct: 163 REILYLRERLNTILSEVTGQPVEKIARDTDRDNFMSGDQAVDYGLIDKVLARR 215

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q0KBK4|CLPP_CUPNH ATP-dependent Clp protease proteolytic subunit OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=clpP PE=3 SV=1

 Score =  189 bits (480), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 102/113 (90%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VSTLC+G+AASMGAFLLA+G KGKR +LPNSRIMIHQPLGGA+GQASDIEIQA
Sbjct: 103 MQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQA 162

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN ILSE TG  V+KI++DTDRDNFMS   A++Y LIDK+L +R
Sbjct: 163 REILYLRERLNTILSEVTGQPVEKIARDTDRDNFMSGDQAVDYGLIDKVLARR 215

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q1LM62|CLPP_RALME ATP-dependent Clp protease proteolytic subunit OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=clpP PE=3 SV=1

 Score =  186 bits (473), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 101/113 (89%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+V TLC+G+AASMGAFLLA+G KGKR +LPNSRIMIHQPLGGA+GQASDIEIQA
Sbjct: 103 MQFIKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQA 162

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN ILSE TG  V+KI++DTDRDNFMS   A++Y LIDK++ +R
Sbjct: 163 REILYLRERLNSILSEVTGQPVEKIARDTDRDNFMSGDQAVDYGLIDKVITRR 215

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q472D3|CLPP_CUPPJ ATP-dependent Clp protease proteolytic subunit OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=clpP PE=3 SV=1

 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 85/113 (75%), Positives = 101/113 (89%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQF+KP+V TLC+G+AASMGAFLLA+G KGKR +LPNSRIMIHQPLGGA+GQASDIEIQA
Sbjct: 103 MQFVKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQA 162

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN ILSE TG  V+KI++DTDRDNFMS   A++Y LIDK++ +R
Sbjct: 163 REILYLRERLNSILSEVTGQPVEKIARDTDRDNFMSGDQAVDYGLIDKVIARR 215

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q39FE8|CLPP_BURS3 ATP-dependent Clp protease proteolytic subunit OS=Burkholderia sp. (strain 383) GN=clpP PE=3 SV=1

 Score =  184 bits (468), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 84/113 (74%), Positives = 104/113 (92%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VSTLC+GLAASMGAFLLASG KGKRF+LPNSR+MIHQPLGGA+GQASDIEIQA
Sbjct: 104 MQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQA 163

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYL++RLN++L++ TG  V++I++DTDRDNFMS++ A  Y LID++L +R
Sbjct: 164 REILYLKERLNQLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVLLKR 216

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Burkholderia sp. (strain 383) (taxid: 269483)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|A1K783|CLPP_AZOSB ATP-dependent Clp protease proteolytic subunit OS=Azoarcus sp. (strain BH72) GN=clpP PE=3 SV=1

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/113 (75%), Positives = 99/113 (87%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKPNVSTLCIG AASMGAFLLA+G KGKRF LPNSR+MIHQPLGG QGQASDIEI A
Sbjct: 97  MQFIKPNVSTLCIGQAASMGAFLLAAGEKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHA 156

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN +L++ TG ++++I +DTDRDNFMSA  A+EY L+DK+L  R
Sbjct: 157 REILYLRERLNGMLAKHTGQTIEQIEKDTDRDNFMSATAAVEYGLVDKVLTSR 209

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Azoarcus sp. (strain BH72) (taxid: 62928)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q0BEF6|CLPP_BURCM ATP-dependent Clp protease proteolytic subunit OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=clpP PE=3 SV=1

 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/113 (74%), Positives = 103/113 (91%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VSTLC+GLAASMGAFLLASG KGKRF+LPNSR+MIHQPLGGA+GQASDIEIQA
Sbjct: 104 MQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQA 163

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYL++RLN +L++ TG  V++I++DTDRDNFMS++ A  Y LID++L +R
Sbjct: 164 REILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVLLKR 216

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (taxid: 339670)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|A0K847|CLPP_BURCH ATP-dependent Clp protease proteolytic subunit OS=Burkholderia cenocepacia (strain HI2424) GN=clpP PE=3 SV=1

 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/113 (74%), Positives = 103/113 (91%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VSTLC+GLAASMGAFLLASG KGKRF+LPNSR+MIHQPLGGA+GQASDIEIQA
Sbjct: 104 MQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQA 163

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYL++RLN +L++ TG  V++I++DTDRDNFMS++ A  Y LID++L +R
Sbjct: 164 REILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVLLKR 216

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Burkholderia cenocepacia (strain HI2424) (taxid: 331272)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
415938744	204	ATP-dependent Clp protease, proteolytic	0.991	0.553	0.831	1e-49
409406436	208	ATP-dependent Clp protease proteolytic s	0.991	0.543	0.831	1e-49
300311895	208	ATP-dependent Clp protease proteolytic s	0.991	0.543	0.831	2e-49
398833401	208	ATP-dependent Clp protease, proteolytic	0.991	0.543	0.831	2e-49
134094958	209	ATP-dependent Clp protease proteolytic s	0.991	0.540	0.805	6e-49
152980689	210	ATP-dependent Clp protease proteolytic s	0.991	0.538	0.814	8e-49
340787626	208	ATP-dependent Clp protease proteolytic s	0.991	0.543	0.796	3e-48
399018228	208	ATP-dependent Clp protease, proteolytic	0.991	0.543	0.805	6e-48
393776900	217	ClpP protein [Ralstonia sp. PBA] gi|3927	0.991	0.520	0.787	3e-47
17546430	217	ATP-dependent Clp protease proteolytic s	0.991	0.520	0.778	8e-47

>gi|415938744|ref|ZP_11555478.1| ATP-dependent Clp protease, proteolytic subunit [Herbaspirillum frisingense GSF30] gi|407759378|gb|EKF69073.1| ATP-dependent Clp protease, proteolytic subunit [Herbaspirillum frisingense GSF30]

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 104/113 (92%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP VSTLC GLAASMGAFLLA+G KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA
Sbjct: 91  MQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 150

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN IL++KTG SV++IS+DTDRDNFMSA  A+EY LIDK+L +R
Sbjct: 151 REILYLRERLNSILADKTGRSVEQISKDTDRDNFMSADAAVEYGLIDKVLTER 203

Source: Herbaspirillum frisingense GSF30

Species: Herbaspirillum frisingense

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|409406436|ref|ZP_11254898.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum sp. GW103] gi|386434985|gb|EIJ47810.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum sp. GW103]

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 104/113 (92%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP VSTLC GLAASMGAFLLA+G KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA
Sbjct: 95  MQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 154

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN IL+EKTG +V++IS+DTDRDNFMSA+ A EY LID++L QR
Sbjct: 155 REILYLRERLNTILAEKTGRTVEQISKDTDRDNFMSAEAAAEYGLIDQVLTQR 207

Source: Herbaspirillum sp. GW103

Species: Herbaspirillum sp. GW103

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300311895|ref|YP_003775987.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum seropedicae SmR1] gi|124483356|emb|CAM32551.1| ATP-dependent Clp protease (proteolytic subunit) protein [Herbaspirillum seropedicae] gi|300074680|gb|ADJ64079.1| ATP-dependent Clp protease (proteolytic subunit) protein [Herbaspirillum seropedicae SmR1]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 103/113 (91%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP VSTLC GLAASMGAFLLA+G KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA
Sbjct: 95  MQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 154

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN IL+EKTG +V++IS+DTDRDNFMSA  A EY LIDK+L +R
Sbjct: 155 REILYLRERLNTILAEKTGRTVEQISKDTDRDNFMSADAAAEYGLIDKVLTER 207

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398833401|ref|ZP_10591533.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Herbaspirillum sp. YR522] gi|398221568|gb|EJN07975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Herbaspirillum sp. YR522]

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 103/113 (91%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP VSTLC GLAASMGAFLLA+G KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA
Sbjct: 95  MQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 154

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN IL+EKTG SV++I++DTDRDNFMSA  A EY LIDK+L +R
Sbjct: 155 REILYLRERLNAILAEKTGRSVEQIAKDTDRDNFMSADAAAEYGLIDKVLTER 207

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134094958|ref|YP_001100033.1| ATP-dependent Clp protease proteolytic subunit [Herminiimonas arsenicoxydans] gi|133738861|emb|CAL61908.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) [Herminiimonas arsenicoxydans]

 Score =  197 bits (502), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 105/113 (92%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKPNVSTLC GLAASMGAFLLA+G KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA
Sbjct: 96  MQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 155

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN+IL+++TG ++++IS+DTDRDNFMSA  A+EY +IDK+L  R
Sbjct: 156 REILYLRERLNQILADRTGKTLEEISRDTDRDNFMSADAAVEYGMIDKVLTTR 208

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|152980689|ref|YP_001353221.1| ATP-dependent Clp protease proteolytic subunit [Janthinobacterium sp. Marseille] gi|226706516|sp|A6SY74.1|CLPP_JANMA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|151280766|gb|ABR89176.1| protease subunit of ATP-dependent Clp proteases [Janthinobacterium sp. Marseille]

 Score =  197 bits (500), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 103/113 (91%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKPNVSTLC GLAASMGAFLLA+G KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA
Sbjct: 97  MQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 156

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN IL+E+TG SV++I++DTDRDNFMSA  A+ Y +IDK+L  R
Sbjct: 157 REILYLRERLNAILAERTGKSVEEIAKDTDRDNFMSADAAVTYGMIDKVLATR 209

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340787626|ref|YP_004753091.1| ATP-dependent Clp protease proteolytic subunit [Collimonas fungivorans Ter331] gi|340552893|gb|AEK62268.1| ATP-dependent Clp protease proteolytic subunit [Collimonas fungivorans Ter331]

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/113 (79%), Positives = 103/113 (91%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQF+KP +STLC G+AASMGAFLLA+G KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA
Sbjct: 95  MQFVKPEISTLCTGMAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 154

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN IL++KTG S+++IS+DTDRDNFMSA  A+EY LIDK+L  R
Sbjct: 155 REILYLRERLNGILADKTGRSIEQISKDTDRDNFMSADAAVEYGLIDKVLATR 207

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|399018228|ref|ZP_10720412.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Herbaspirillum sp. CF444] gi|398101864|gb|EJL92064.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Herbaspirillum sp. CF444]

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 102/113 (90%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VSTLC GLAASMGAFLLA+G KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA
Sbjct: 95  MQFIKPDVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 154

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN IL+EKTG +  +I +DTDRDNFMSA  A EY LID++L++R
Sbjct: 155 REILYLRERLNVILAEKTGRTTDQIGKDTDRDNFMSATAAAEYGLIDQVLEKR 207

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|393776900|ref|ZP_10365194.1| ClpP protein [Ralstonia sp. PBA] gi|392716257|gb|EIZ03837.1| ClpP protein [Ralstonia sp. PBA]

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/113 (78%), Positives = 104/113 (92%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VSTLC+G+AASMGAFLLA+G KGKRF+LPNSRIMIHQPLGGA+GQASDIEIQA
Sbjct: 103 MQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGARGQASDIEIQA 162

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN+ILS+ TG  V+KI++DTDRDNFMSA  A+EY LIDK + +R
Sbjct: 163 REILYLRERLNQILSDVTGQPVEKIARDTDRDNFMSADQAVEYGLIDKAIGKR 215

Source: Ralstonia sp. PBA

Species: Ralstonia sp. PBA

Genus: Ralstonia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|17546430|ref|NP_519832.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia solanacearum GMI1000] gi|83745913|ref|ZP_00942970.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia solanacearum UW551] gi|207743049|ref|YP_002259441.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase clp) protein [Ralstonia solanacearum IPO1609] gi|300691404|ref|YP_003752399.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Ralstonia solanacearum PSI07] gi|300703972|ref|YP_003745574.1| proteolytic subunit of clpa-clpp ATP-dependent serine protease [Ralstonia solanacearum CFBP2957] gi|386333413|ref|YP_006029583.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase clp) protein [Ralstonia solanacearum Po82] gi|421888083|ref|ZP_16319197.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Ralstonia solanacearum K60-1] gi|421898197|ref|ZP_16328564.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase clp) protein [Ralstonia solanacearum MolK2] gi|22653696|sp|Q8XYP7.1|CLPP_RALSO RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gi|17428728|emb|CAD15413.1| probable atp-atp-dependent clp protease proteolytic subunit (endopeptidase clp). transmembrane protein [Ralstonia solanacearum GMI1000] gi|83727603|gb|EAP74724.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia solanacearum UW551] gi|206589403|emb|CAQ36365.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase clp) protein [Ralstonia solanacearum MolK2] gi|206594446|emb|CAQ61373.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase clp) protein [Ralstonia solanacearum IPO1609] gi|299066731|emb|CBJ37925.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Ralstonia solanacearum CMR15] gi|299071635|emb|CBJ42959.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Ralstonia solanacearum CFBP2957] gi|299078464|emb|CBJ51116.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Ralstonia solanacearum PSI07] gi|334195862|gb|AEG69047.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase clp) protein [Ralstonia solanacearum Po82] gi|344167643|emb|CCA79883.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [blood disease bacterium R229] gi|344174667|emb|CCA86475.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Ralstonia syzygii R24] gi|378966546|emb|CCF95945.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Ralstonia solanacearum K60-1]

 Score =  190 bits (483), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 101/113 (89%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQF+KP+VSTLC+G+AASMGAFLLA+G KGKR++LPNSRIMIHQPLGGA+GQASDIEIQA
Sbjct: 103 MQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEIQA 162

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REILYLR+RLN ILSE TG  V KI++DTDRDNFMS   A EY LIDK+L +R
Sbjct: 163 REILYLRERLNTILSEVTGQPVDKIARDTDRDNFMSGDQAKEYGLIDKVLARR 215

Source: Ralstonia solanacearum GMI1000

Species: Ralstonia solanacearum

Genus: Ralstonia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TIGR_CMR|CPS_3785	220	CPS_3785 "ATP-dependent Clp pr	0.991	0.513	0.663	7.8e-39
TIGR_CMR|BA_5380	193	BA_5380 "ATP-dependent Clp pro	0.991	0.585	0.672	4.3e-38
TIGR_CMR|SO_1794	202	SO_1794 "ATP-dependent Clp pro	0.991	0.559	0.672	6.3e-37
TIGR_CMR|VC_1922	200	VC_1922 "ATP-dependent Clp pro	0.991	0.565	0.663	8e-37
UNIPROTKB|P63786	195	clpP "ATP-dependent Clp protea	0.964	0.564	0.654	3.5e-36
UNIPROTKB|P0A6G7	207	clpP [Escherichia coli K-12 (t	0.991	0.545	0.654	7.2e-36
TIGR_CMR|CHY_0325	195	CHY_0325 "ATP-dependent Clp pr	1.0	0.584	0.666	7.2e-36
TIGR_CMR|CJE_0185	194	CJE_0185 "ATP-dependent Clp pr	0.982	0.577	0.669	4e-35
TAIR|locus:2196120	298	CLPP5 "nuclear encoded CLP pro	0.964	0.369	0.672	8.3e-35
TIGR_CMR|GSU_1792	199	GSU_1792 "ATP-dependent Clp pr	0.982	0.562	0.625	1.8e-32

TIGR_CMR|CPS_3785 CPS_3785 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 75/113 (66%), Positives = 99/113 (87%)

Query:     1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             M+FIKPN+ST+CIG AASMGAFLL+ G KGKR+ LPN+R+MIHQPLGG QGQASD EI A
Sbjct:   105 MKFIKPNISTVCIGQAASMGAFLLSGGEKGKRYCLPNARVMIHQPLGGFQGQASDFEIHA 164

Query:    61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
             +EIL+++ +LN++++E TG ++ K+SQDTDRDNF+SA+ A+EY L+D IL+QR
Sbjct:   165 KEILFIKDKLNKLMAEHTGQTLDKVSQDTDRDNFLSAEAAVEYGLVDSILEQR 217

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|BA_5380 BA_5380 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 76/113 (67%), Positives = 98/113 (86%)

Query:     1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             MQFIKP VST+CIG+AASMGAFLLA+G KGKR++LPNS  MIHQPLGGAQGQA++IEI A
Sbjct:    81 MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEAMIHQPLGGAQGQATEIEIAA 140

Query:    61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
             + IL+LR++LN+IL+++TG  ++ + +DTDRDNFM+A+ A+EY LIDKI   R
Sbjct:   141 KRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR 193

GO:0006508 "proteolysis" evidence=ISS

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|SO_1794 SO_1794 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 76/113 (67%), Positives = 94/113 (83%)

Query:     1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             MQFIKPNVST+CIG AASMGAFLLA G KGKRF LPNSR+MIHQPLGG QGQASDI I A
Sbjct:    89 MQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIAIHA 148

Query:    61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
             +EIL ++ +LN++L++ TG  ++ I +DTDRDNFMSA  A+EY L+D ++ +R
Sbjct:   149 QEILGIKNKLNQMLADHTGQPLEVIERDTDRDNFMSATQAVEYGLVDAVMTKR 201

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|VC_1922 VC_1922 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 75/113 (66%), Positives = 92/113 (81%)

Query:     1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             MQFIKPNVST+C+G A SMGAFLLA G  GKR+ LPNSR+MIHQPLGG QGQASDI+I A
Sbjct:    86 MQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHA 145

Query:    61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
             +EIL ++ +LN +L+E TG  ++ I +DTDRDNFMSA  A+EY L+D +LK R
Sbjct:   146 QEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGLVDAVLKHR 198

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|P63786 clpP "ATP-dependent Clp protease proteolytic subunit" [Staphylococcus aureus subsp. aureus MW2 (taxid:196620)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 72/110 (65%), Positives = 95/110 (86%)

Query:     1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             +Q IKP+V T+CIG+AASMG+FLLA+G KGKRF+LPN+ +MIHQPLGGAQGQA++IEI A
Sbjct:    81 IQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAA 140

Query:    61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
               IL  R++LN ILSE+TG S++KI +DTDRDNF++A+ A EY LID+++
Sbjct:   141 NHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|P0A6G7 clpP [Escherichia coli K-12 (taxid:83333)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 74/113 (65%), Positives = 94/113 (83%)

Query:     1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             MQFIKP+VST+C+G AASMGAFLL +G KGKRF LPNSR+MIHQPLGG QGQA+DIEI A
Sbjct:    94 MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHA 153

Query:    61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
             REIL ++ R+NE+++  TG S+++I +DT+RD F+SA  A+EY L+D IL  R
Sbjct:   154 REILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR 206

GO:0009408 "response to heat" evidence=IEP

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=EXP

TIGR_CMR|CHY_0325 CHY_0325 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 76/114 (66%), Positives = 94/114 (82%)

Query:     1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             MQ+IKP+VST+CIG AASMGAFLLA+G KGKRFSLP +RIMIHQPLGG QGQA+DI+I A
Sbjct:    82 MQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDIHA 141

Query:    61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
             REIL +R  LNE+L++ TG   +KI +DT+RD FMSA  A EY +ID+++  RK
Sbjct:   142 REILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVITVRK 195

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|CJE_0185 CJE_0185 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 75/112 (66%), Positives = 95/112 (84%)

Query:     1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             M +IKP+V T+CIG AASMGAFLL+ G +GKRF+LPNSRIMIHQPLGGA+GQA+DIEIQA
Sbjct:    80 MNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQA 139

Query:    61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
             +EIL L+  LN+IL++ T   V KI++DT+RD FMSA+ A EY LIDK+L++
Sbjct:   140 KEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSAQEAKEYGLIDKVLEK 191

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TAIR|locus:2196120 CLPP5 "nuclear encoded CLP protease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 74/110 (67%), Positives = 93/110 (84%)

Query:     1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             M+ I+P+VST+C+GLAASMGAFLL++GTKGKR+SLPNSRIMIHQPLGGAQG  +DI+IQA
Sbjct:   176 MRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQA 235

Query:    61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
              E+L+ +  LN  L+  TG S++KI+QDTDRD FMSAK A EY LID ++
Sbjct:   236 NEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009840 "chloroplastic endopeptidase Clp complex" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TIGR_CMR|GSU_1792 GSU_1792 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 70/112 (62%), Positives = 88/112 (78%)

Query:     1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             MQ+IK  VST+C+G AASMGA LL+ G KGKRFSL +SRIMIHQPLGG QGQA+DI I A
Sbjct:    80 MQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLKHSRIMIHQPLGGFQGQATDIHIHA 139

Query:    61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
             +EIL L++RLNEIL+E TG  + K+  DT+RD FMS   A +Y +ID I+++
Sbjct:   140 QEILKLKKRLNEILAENTGQQLAKVEADTERDYFMSGAEAKDYGIIDNIIER 191

GO:0009368 "endopeptidase Clp complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4JF05	CLPP_BURVG	3, ., 4, ., 2, 1, ., 9, 2	0.7433	0.9912	0.5207	yes	N/A
A3NWA6	CLPP_BURP0	3, ., 4, ., 2, 1, ., 9, 2	0.7168	0.9912	0.5207	yes	N/A
A2SFB5	CLPP_METPP	3, ., 4, ., 2, 1, ., 9, 2	0.7168	0.9912	0.5594	yes	N/A
Q5KVD9	CLPP_GEOKA	3, ., 4, ., 2, 1, ., 9, 2	0.7053	0.9824	0.5714	yes	N/A
A6Q1C1	CLPP_NITSB	3, ., 4, ., 2, 1, ., 9, 2	0.7142	0.9824	0.5714	yes	N/A
Q2L256	CLPP_BORA1	3, ., 4, ., 2, 1, ., 9, 2	0.7280	1.0	0.5671	yes	N/A
Q7VXI7	CLPP_BORPE	3, ., 4, ., 2, 1, ., 9, 2	0.7522	0.9912	0.5207	yes	N/A
Q47FB6	CLPP_DECAR	3, ., 4, ., 2, 1, ., 9, 2	0.6991	0.9912	0.5406	yes	N/A
C5D7M9	CLPP_GEOSW	3, ., 4, ., 2, 1, ., 9, 2	0.6964	0.9824	0.5714	yes	N/A
Q1LM62	CLPP_RALME	3, ., 4, ., 2, 1, ., 9, 2	0.7610	0.9912	0.5231	yes	N/A
B7GL34	CLPP_ANOFW	3, ., 4, ., 2, 1, ., 9, 2	0.6964	0.9824	0.5714	yes	N/A
Q47XL8	CLPP_COLP3	3, ., 4, ., 2, 1, ., 9, 2	0.6637	0.9912	0.5136	yes	N/A
Q7W8X2	CLPP_BORPA	3, ., 4, ., 2, 1, ., 9, 2	0.7522	0.9912	0.5207	yes	N/A
B1Y6H3	CLPP_LEPCP	3, ., 4, ., 2, 1, ., 9, 2	0.7168	0.9912	0.5594	yes	N/A
Q72XW9	CLPP2_BACC1	3, ., 4, ., 2, 1, ., 9, 2	0.6725	0.9912	0.5854	yes	N/A
A6SY74	CLPP_JANMA	3, ., 4, ., 2, 1, ., 9, 2	0.8141	0.9912	0.5380	yes	N/A
Q1BH85	CLPP_BURCA	3, ., 4, ., 2, 1, ., 9, 2	0.7433	0.9912	0.5207	yes	N/A
A4ISQ2	CLPP_GEOTN	3, ., 4, ., 2, 1, ., 9, 2	0.6785	0.9824	0.5714	yes	N/A
A9IR54	CLPP_BORPD	3, ., 4, ., 2, 1, ., 9, 2	0.7433	0.9912	0.5207	yes	N/A
Q39FE8	CLPP_BURS3	3, ., 4, ., 2, 1, ., 9, 2	0.7433	0.9912	0.5207	yes	N/A
A1V4X1	CLPP_BURMS	3, ., 4, ., 2, 1, ., 9, 2	0.7168	0.9912	0.5207	yes	N/A
B3R4W1	CLPP_CUPTR	3, ., 4, ., 2, 1, ., 9, 2	0.7787	0.9912	0.5231	yes	N/A
Q815J6	CLPP2_BACCR	3, ., 4, ., 2, 1, ., 9, 2	0.6725	0.9912	0.5854	yes	N/A
Q82Y57	CLPP_NITEU	3, ., 4, ., 2, 1, ., 9, 2	0.6666	1.0	0.5327	yes	N/A
Q63V41	CLPP_BURPS	3, ., 4, ., 2, 1, ., 9, 2	0.7168	0.9912	0.5207	yes	N/A
Q62JK7	CLPP_BURMA	3, ., 4, ., 2, 1, ., 9, 2	0.7168	0.9912	0.5458	yes	N/A
Q9K709	CLPP1_BACHD	3, ., 4, ., 2, 1, ., 9, 2	0.6754	1.0	0.5876	yes	N/A
Q13Z15	CLPP2_BURXL	3, ., 4, ., 2, 1, ., 9, 2	0.7168	0.9912	0.5207	yes	N/A
Q3JRC9	CLPP_BURP1	3, ., 4, ., 2, 1, ., 9, 2	0.7168	0.9912	0.5458	yes	N/A
P80244	CLPP_BACSU	3, ., 4, ., 2, 1, ., 9, 2	0.7	0.9649	0.5583	yes	N/A
Q0BEF6	CLPP_BURCM	3, ., 4, ., 2, 1, ., 9, 2	0.7433	0.9912	0.5207	yes	N/A
Q2Y6J0	CLPP_NITMU	3, ., 4, ., 2, 1, ., 9, 2	0.6991	0.9912	0.5305	yes	N/A
Q5P161	CLPP_AROAE	3, ., 4, ., 2, 1, ., 9, 2	0.6991	0.9912	0.5330	yes	N/A
Q3SI98	CLPP_THIDA	3, ., 4, ., 2, 1, ., 9, 2	0.6929	1.0	0.5377	yes	N/A
Q7WK83	CLPP_BORBR	3, ., 4, ., 2, 1, ., 9, 2	0.7522	0.9912	0.5207	yes	N/A
Q2SWQ6	CLPP_BURTA	3, ., 4, ., 2, 1, ., 9, 2	0.7079	0.9912	0.5458	yes	N/A
Q472D3	CLPP_CUPPJ	3, ., 4, ., 2, 1, ., 9, 2	0.7522	0.9912	0.5231	yes	N/A
Q81X63	CLPP2_BACAN	3, ., 4, ., 2, 1, ., 9, 2	0.6725	0.9912	0.5854	yes	N/A
Q8XYP7	CLPP_RALSO	3, ., 4, ., 2, 1, ., 9, 2	0.7787	0.9912	0.5207	yes	N/A
A3MKJ8	CLPP_BURM7	3, ., 4, ., 2, 1, ., 9, 2	0.7168	0.9912	0.5207	yes	N/A
Q0KBK4	CLPP_CUPNH	3, ., 4, ., 2, 1, ., 9, 2	0.7787	0.9912	0.5231	yes	N/A
A0K847	CLPP_BURCH	3, ., 4, ., 2, 1, ., 9, 2	0.7433	0.9912	0.5207	yes	N/A
Q6HBD8	CLPP2_BACHK	3, ., 4, ., 2, 1, ., 9, 2	0.6725	0.9912	0.5854	yes	N/A
Q8ENM5	CLPP_OCEIH	3, ., 4, ., 2, 1, ., 9, 2	0.6637	0.9912	0.5854	yes	N/A
Q1H1G0	CLPP_METFK	3, ., 4, ., 2, 1, ., 9, 2	0.6725	0.9912	0.5305	yes	N/A
A2SBG3	CLPP_BURM9	3, ., 4, ., 2, 1, ., 9, 2	0.7168	0.9912	0.5207	yes	N/A
Q631K2	CLPP2_BACCZ	3, ., 4, ., 2, 1, ., 9, 2	0.6725	0.9912	0.5854	yes	N/A
A3NAI5	CLPP_BURP6	3, ., 4, ., 2, 1, ., 9, 2	0.7168	0.9912	0.5207	yes	N/A
A1K783	CLPP_AZOSB	3, ., 4, ., 2, 1, ., 9, 2	0.7522	0.9912	0.5330	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.921
3rd Layer	3.4.21.92	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
PRK00277	200	PRK00277, clpP, ATP-dependent Clp protease proteol	3e-78
pfam00574	182	pfam00574, CLP_protease, Clp protease	9e-68
cd07017	171	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP)	5e-66
TIGR00493	192	TIGR00493, clpP, ATP-dependent Clp endopeptidase,	1e-64
COG0740	200	COG0740, ClpP, Protease subunit of ATP-dependent C	2e-63
PRK12553	207	PRK12553, PRK12553, ATP-dependent Clp protease pro	3e-59
PRK12551	196	PRK12551, PRK12551, ATP-dependent Clp protease pro	2e-58
CHL00028	200	CHL00028, clpP, ATP-dependent Clp protease proteol	1e-51
PRK12552	222	PRK12552, PRK12552, ATP-dependent Clp protease-lik	2e-47
PRK14514	221	PRK14514, PRK14514, ATP-dependent Clp protease pro	2e-47
cd07013	162	cd07013, S14_ClpP, Caseinolytic protease (ClpP) is	3e-44
PRK14512	197	PRK14512, PRK14512, ATP-dependent Clp protease pro	7e-38
PRK14513	201	PRK14513, PRK14513, ATP-dependent Clp protease pro	8e-37
cd00394	161	cd00394, Clp_protease_like, Caseinolytic protease	1e-25
cd07016	160	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP)	6e-16

>gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  228 bits (584), Expect = 3e-78
 Identities = 86/114 (75%), Positives = 101/114 (88%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VST+CIG AASMGAFLLA+G KGKRF+LPNSRIMIHQPLGG QGQA+DIEI A
Sbjct: 85  MQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHA 144

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           REIL L++RLNEIL+E TG  ++KI +DTDRDNFMSA+ A EY LID++L +RK
Sbjct: 145 REILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRK 198

Length = 200

>gnl|CDD|201316 pfam00574, CLP_protease, Clp protease

 Score =  201 bits (513), Expect = 9e-68
 Identities = 80/113 (70%), Positives = 99/113 (87%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VST+C+GLAASMG+F+LA+GTKGKRF+LPN+RIMIHQP GGAQGQASDIEIQA
Sbjct: 70  MQFIKPDVSTICLGLAASMGSFILAAGTKGKRFALPNARIMIHQPSGGAQGQASDIEIQA 129

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
            EIL +R+RLNEI +E TG  ++KI +D DRD FMSA+ A EY LID++++ R
Sbjct: 130 EEILKIRERLNEIYAEHTGQPLEKIEKDLDRDTFMSAEEAKEYGLIDEVIESR 182

The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Cyanophora parodoxa clpP-B has lost all of these active site residues and is therefore inactive. Some members contain one or two large insertions. Length = 182

>gnl|CDD|132928 cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  196 bits (501), Expect = 5e-66
 Identities = 82/109 (75%), Positives = 97/109 (88%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQ+IKP VST+C+GLAASMGA LLA+GTKGKR++LPNSRIMIHQPLGGA GQASDIEIQA
Sbjct: 63  MQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQA 122

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKI 109
           +EIL LR+RLNEIL++ TG  ++KI +DTDRD +MSA+ A EY LIDKI
Sbjct: 123 KEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 171

>gnl|CDD|188055 TIGR00493, clpP, ATP-dependent Clp endopeptidase, proteolytic subunit ClpP

 Score =  193 bits (493), Expect = 1e-64
 Identities = 83/110 (75%), Positives = 97/110 (88%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VST+CIG AASMGAFLLA+G KGKRFSLPNSRIMIHQPLGGAQGQA+DIEIQA
Sbjct: 81  MQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQATDIEIQA 140

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
            EIL L+  LN+IL+E TG S+++I +DT+RD FMSA+ A EY LIDK+L
Sbjct: 141 NEILRLKGLLNDILAEHTGQSLEQIERDTERDFFMSAEEAKEYGLIDKVL 190

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores at least 370 by This model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 192

>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score =  190 bits (486), Expect = 2e-63
 Identities = 76/114 (66%), Positives = 96/114 (84%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP VST+C+G AASMG+ LL +G KGKRF+LPN+RIMIHQP GGAQGQASDIEI A
Sbjct: 81  MQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHA 140

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           REIL +++RLN I +E TG +++KI +DTDRD +MSA+ A EY LIDK+++ R+
Sbjct: 141 REILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194

Length = 200

>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  180 bits (459), Expect = 3e-59
 Identities = 69/116 (59%), Positives = 93/116 (80%), Gaps = 2/116 (1%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPL--GGAQGQASDIEI 58
           +QFI+P+V T+C G AAS GA LLA+GT GKRF+LPN+RI+IHQP   GG +GQASD+EI
Sbjct: 89  IQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEI 148

Query: 59  QAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           QAREIL +R+RL  IL+E TG SV+KI +DTDRD +++A+ A +Y L+D+I+   +
Sbjct: 149 QAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYR 204

Length = 207

>gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  178 bits (453), Expect = 2e-58
 Identities = 74/113 (65%), Positives = 93/113 (82%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQ +KP+V T+C+GLAASMGAFLL +G KGKR SL +SRIMIHQPLGGA+GQASDI IQA
Sbjct: 79  MQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQA 138

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
            EIL+L++RLN  LSE+TG  +++I +DTDRD FMS   A+EY LID ++ +R
Sbjct: 139 DEILFLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191

Length = 196

>gnl|CDD|214340 CHL00028, clpP, ATP-dependent Clp protease proteolytic subunit

 Score =  161 bits (409), Expect = 1e-51
 Identities = 50/110 (45%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-QGQASDIEIQ 59
           MQF+KP+V T+C+GLAASM +F+LA G   KR + P++R+MIHQP     +GQAS+  ++
Sbjct: 84  MQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLE 143

Query: 60  AREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKI 109
           A E+L LR+ +  + +++TG  +  IS+D +RD FMSA  A  Y ++D +
Sbjct: 144 AEELLKLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLV 193

Length = 200

>gnl|CDD|183588 PRK12552, PRK12552, ATP-dependent Clp protease-like protein; Reviewed

 Score =  151 bits (382), Expect = 2e-47
 Identities = 57/114 (50%), Positives = 89/114 (78%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           M++IKP V T+CIG A    A +L++GTKG+R SLP++ I++HQP  GA+GQA+DI+I+A
Sbjct: 103 MRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRA 162

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           +E+L+ ++ + EILS  TG +V+K+S+DTDR  +++ + A EY LID++L+ RK
Sbjct: 163 KEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRK 216

Length = 222

>gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  150 bits (381), Expect = 2e-47
 Identities = 63/114 (55%), Positives = 88/114 (77%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFI  +V+T+C G+AASM + LL +GTKGKR +LP+SR+MIHQPLGGAQGQASDIEI A
Sbjct: 108 MQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITA 167

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           REI  L++ L  I+++ +G    K+  D+DRD +M+A+ A EY +ID++L ++ 
Sbjct: 168 REIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKKP 221

Length = 221

>gnl|CDD|132924 cd07013, S14_ClpP, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  140 bits (355), Expect = 3e-44
 Identities = 49/109 (44%), Positives = 71/109 (65%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           ++FIK +V T+  GLAASMG+ +  +G KGKRF LPN+ +MIHQP GG  G A+D+ I A
Sbjct: 54  IKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYA 113

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKI 109
             +L +   L    + KTG S +++  D +RD ++SA+ A+EY   D I
Sbjct: 114 DLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 162

>gnl|CDD|237741 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  126 bits (317), Expect = 7e-38
 Identities = 46/114 (40%), Positives = 79/114 (69%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           ++F+KP V T+ +GL AS  A +  +  K  RFSLPN+R ++HQPL G +G A+DIEI A
Sbjct: 77  IRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYA 136

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
            E+  ++  LN+I++++TG  + K+ +DTDRD ++ +  A++Y L+ ++++ R 
Sbjct: 137 NELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRL 190

Length = 197

>gnl|CDD|237742 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  123 bits (310), Expect = 8e-37
 Identities = 54/114 (47%), Positives = 78/114 (68%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           M++IK  VST+C+G+A SMG+ LL +G KGKR +LPNSRIMIHQ   G +G   D+E+QA
Sbjct: 81  MRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQA 140

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           +E+L+LR  L +I    T    +K+ +D +RD FMS + A  Y LID +++  +
Sbjct: 141 KEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTR 194

Length = 201

>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease

 Score = 93.6 bits (233), Expect = 1e-25
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQAS--DIEI 58
           +Q  +  V     G AAS G ++  +  K      P +R+  H P+GG  G  +    E 
Sbjct: 53  LQASRKPVIAYVGGQAASAGYYIATAANK--IVMAPGTRVGSHGPIGGYGGNGNPTAQEA 110

Query: 59  QAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKI 109
             R ILY   R   +++E  G + +K+ +D ++D  ++A+ A+EY L+D +
Sbjct: 111 DQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161

>gnl|CDD|132927 cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 68.7 bits (169), Expect = 6e-16
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 5   KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREIL 64
           K  V+    GLAAS  + +  +G +      PN+ +MIH P  GA G A D+   A  + 
Sbjct: 58  KGKVTVKIDGLAASAASVIAMAGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLD 115

Query: 65  YLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKI 109
            + + +    +EKTG S ++IS   D + +++A+ A+E    D+I
Sbjct: 116 KIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	100.0
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	100.0
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	100.0
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
KOG0840|consensus	275		100.0
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	100.0
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	100.0
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	100.0
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	100.0
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	100.0
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.94
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.91
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.9
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.79
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.77
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.64
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.43
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.42
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.38
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.33
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	99.17
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.17
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.01
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	98.58
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	98.57
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.54
PRK11778	330	putative inner membrane peptidase; Provisional	98.41
PRK06495	257	enoyl-CoA hydratase; Provisional	98.4
PRK10949	618	protease 4; Provisional	98.36
PRK06213	229	enoyl-CoA hydratase; Provisional	98.35
PRK05869	222	enoyl-CoA hydratase; Validated	98.35
PRK08139	266	enoyl-CoA hydratase; Validated	98.32
PRK08258	277	enoyl-CoA hydratase; Provisional	98.32
PRK08150	255	enoyl-CoA hydratase; Provisional	98.31
PRK06143	256	enoyl-CoA hydratase; Provisional	98.29
PRK07938	249	enoyl-CoA hydratase; Provisional	98.29
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	98.28
PRK06563	255	enoyl-CoA hydratase; Provisional	98.26
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	98.26
PRK07511	260	enoyl-CoA hydratase; Provisional	98.24
PRK07468	262	enoyl-CoA hydratase; Provisional	98.24
PRK05995	262	enoyl-CoA hydratase; Provisional	98.24
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	98.23
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.22
PLN02888	265	enoyl-CoA hydratase	98.21
PRK05981	266	enoyl-CoA hydratase; Provisional	98.21
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	98.2
PRK06494	259	enoyl-CoA hydratase; Provisional	98.19
PRK06127	269	enoyl-CoA hydratase; Provisional	98.19
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	98.19
PRK06210	272	enoyl-CoA hydratase; Provisional	98.19
PRK05980	260	enoyl-CoA hydratase; Provisional	98.19
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	98.19
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	98.18
PRK06688	259	enoyl-CoA hydratase; Provisional	98.18
PRK09245	266	enoyl-CoA hydratase; Provisional	98.17
PRK06190	258	enoyl-CoA hydratase; Provisional	98.17
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	98.16
PRK09076	258	enoyl-CoA hydratase; Provisional	98.16
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	98.16
PRK06144	262	enoyl-CoA hydratase; Provisional	98.15
PRK06023	251	enoyl-CoA hydratase; Provisional	98.15
PRK05862	257	enoyl-CoA hydratase; Provisional	98.15
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	98.15
PRK07799	263	enoyl-CoA hydratase; Provisional	98.15
PRK07509	262	enoyl-CoA hydratase; Provisional	98.15
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	98.14
PRK07658	257	enoyl-CoA hydratase; Provisional	98.14
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	98.14
PRK08259	254	enoyl-CoA hydratase; Provisional	98.13
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	98.13
PRK06142	272	enoyl-CoA hydratase; Provisional	98.13
PRK08138	261	enoyl-CoA hydratase; Provisional	98.12
PRK08260	296	enoyl-CoA hydratase; Provisional	98.12
PRK07260	255	enoyl-CoA hydratase; Provisional	98.12
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	98.11
PRK07854	243	enoyl-CoA hydratase; Provisional	98.1
PRK08252	254	enoyl-CoA hydratase; Provisional	98.1
PLN02921	327	naphthoate synthase	98.1
PRK08290	288	enoyl-CoA hydratase; Provisional	98.09
PRK07657	260	enoyl-CoA hydratase; Provisional	98.08
PRK08788	287	enoyl-CoA hydratase; Validated	98.08
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	98.07
PRK05864	276	enoyl-CoA hydratase; Provisional	98.06
PLN02600	251	enoyl-CoA hydratase	98.05
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	98.05
PRK12478	298	enoyl-CoA hydratase; Provisional	98.05
PRK07327	268	enoyl-CoA hydratase; Provisional	98.05
KOG1680|consensus	290		98.04
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	98.03
PRK06072	248	enoyl-CoA hydratase; Provisional	98.01
PRK08140	262	enoyl-CoA hydratase; Provisional	98.01
PRK07659	260	enoyl-CoA hydratase; Provisional	97.99
PRK08321	302	naphthoate synthase; Validated	97.99
PRK05870	249	enoyl-CoA hydratase; Provisional	97.97
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	97.97
PRK07827	260	enoyl-CoA hydratase; Provisional	97.94
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.91
PRK08272	302	enoyl-CoA hydratase; Provisional	97.88
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	97.83
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	97.82
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	97.8
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	97.75
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	97.74
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.69
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	97.65
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	97.65
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.62
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.6
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	97.58
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	97.54
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	97.52
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.45
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	97.45
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	97.44
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.44
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.38
PRK10949	618	protease 4; Provisional	97.35
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.28
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	97.18
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.06
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	96.98
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	96.64
KOG1681|consensus	292		96.55
COG3904	245	Predicted periplasmic protein [Function unknown]	96.43
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.34
KOG1682|consensus	287		95.23
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	95.16
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	94.27
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	93.61
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	92.3
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	91.2
KOG1679|consensus	291		89.32
KOG0016|consensus	266		85.06

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=100.00  E-value=1.3e-44  Score=261.38  Aligned_cols=113  Identities=67%  Similarity=1.051  Sum_probs=111.3

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |+|+|+||+|+|+|+|||||++|++||++|+|+++|||++|||||+++..|+++|++++++++.+.++++.++|+++||+
T Consensus        81 m~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq  160 (200)
T COG0740          81 MQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQ  160 (200)
T ss_pred             HHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      +.++|.++|+||+||||+||++|||||+|++.+
T Consensus       161 ~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~  193 (200)
T COG0740         161 TLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESR  193 (200)
T ss_pred             CHHHHHHhhcccccCCHHHHHHcCCcceecccc
Confidence            999999999999999999999999999999875

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=100.00  E-value=2.2e-43  Score=259.22  Aligned_cols=113  Identities=50%  Similarity=0.838  Sum_probs=110.8

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |++++++|+|+|+|+|+|+|++||+||++|+|++.|||++|||||+++..|+++|+++++++|+++++.+.++|+++||+
T Consensus       103 m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~  182 (222)
T PRK12552        103 MRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQ  182 (222)
T ss_pred             HHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      +.|+|.++|+||+||||+||++|||||+|++++
T Consensus       183 ~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~  215 (222)
T PRK12552        183 TVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESR  215 (222)
T ss_pred             CHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence            999999999999999999999999999999864

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=7.7e-43  Score=253.51  Aligned_cols=113  Identities=48%  Similarity=0.809  Sum_probs=110.6

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |+++++||+|+|+|+|+|||++|++||++|+|++.|||++|||||+++..|+++|+++++++|+++++.+.++|+++||+
T Consensus        81 m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~  160 (201)
T PRK14513         81 MRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDL  160 (201)
T ss_pred             HHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      +.++|.++|++|+||||+||++|||||+|++++
T Consensus       161 ~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~  193 (201)
T PRK14513        161 PHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT  193 (201)
T ss_pred             CHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence            999999999999999999999999999999865

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=2.6e-42  Score=253.66  Aligned_cols=114  Identities=55%  Similarity=0.891  Sum_probs=111.5

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |+++++||+|+|+|+|||||++|+++|++|+|++.|||++|||||+++..|+++|+++++++++++++.+.++|+++||+
T Consensus       108 m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~  187 (221)
T PRK14514        108 MQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGT  187 (221)
T ss_pred             HHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccCC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK  114 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~~  114 (114)
                      +.++|.++|++|+||||+||++|||||+|+++++
T Consensus       188 ~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~~  221 (221)
T PRK14514        188 PFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKKP  221 (221)
T ss_pred             CHHHHHHHhhcCccCCHHHHHHcCCccEEeecCC
Confidence            9999999999999999999999999999999864

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=8.7e-42  Score=247.29  Aligned_cols=113  Identities=65%  Similarity=1.021  Sum_probs=110.6

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |+++++||+|+|+|+|+|+|++|+++|++|+|++.|||++|||||+++..|+++|+++++++|+++++.+.++|+++||+
T Consensus        79 m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~  158 (196)
T PRK12551         79 MQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQ  158 (196)
T ss_pred             HHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      +.++|.++|++|+||||+||++|||||+|++++
T Consensus       159 ~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~  191 (196)
T PRK12551        159 PLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             CHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence            999999999999999999999999999999875

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=100.00  E-value=3.6e-41  Score=244.75  Aligned_cols=113  Identities=44%  Similarity=0.777  Sum_probs=110.1

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG-AQGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~-~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      |+++++||+|+|+|+|+|+|++||++|++|+|++.|||++|||||+++ ..|+++|+++++++|+++++.+.++|+++||
T Consensus        84 m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg  163 (200)
T CHL00028         84 MQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTG  163 (200)
T ss_pred             HHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            578999999999999999999999999999999999999999999988 8999999999999999999999999999999


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      ++.++|.++|++|+||||+||++|||||+|+++.
T Consensus       164 ~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~  197 (200)
T CHL00028        164 KPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             cCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence            9999999999999999999999999999999864

>KOG0840|consensus

Probab=100.00  E-value=2.3e-41  Score=250.23  Aligned_cols=112  Identities=62%  Similarity=0.998  Sum_probs=110.6

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |+|+|.||.|+|+|+|+|+|+|||++|.+|+|++.|||++|||||.+++.|++.|+.++++|+.+.++.+.++|+++||+
T Consensus       146 Mq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq  225 (275)
T KOG0840|consen  146 MQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQ  225 (275)
T ss_pred             HHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |.|+|.++|+||.||+|+||+||||||+|++.
T Consensus       226 ~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~  257 (275)
T KOG0840|consen  226 PLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDH  257 (275)
T ss_pred             cHHHHHhhhcccccCCHHHHHHhcchhhhhcC
Confidence            99999999999999999999999999999984

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=8.9e-39  Score=231.77  Aligned_cols=113  Identities=41%  Similarity=0.741  Sum_probs=109.9

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |+++++||+|+|+|+|+|+|++|+++|++|+|++.|||++|||||++++.|++++++..+++|+++++.+.++|+++||+
T Consensus        77 i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~  156 (197)
T PRK14512         77 IRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQ  156 (197)
T ss_pred             HHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      +.+++.++|++|+||||+||++|||||+|++++
T Consensus       157 ~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~  189 (197)
T PRK14512        157 ELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETR  189 (197)
T ss_pred             CHHHHHHhhhcCcccCHHHHHHcCCccEeecCc
Confidence            999999999999999999999999999999864

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=100.00  E-value=1e-38  Score=230.45  Aligned_cols=112  Identities=72%  Similarity=1.080  Sum_probs=108.5

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |+++++||+|+|+|+|+|+|++|+++|++++|++.|||++|||||+++..|++.|+++++++++++++.+.++|+++||+
T Consensus        80 l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~  159 (191)
T TIGR00493        80 MQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQ  159 (191)
T ss_pred             HHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            56788999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      +.++++++|++|+||||+||++|||||+|++.
T Consensus       160 ~~~~i~~~~~~~~~lta~EA~~~GliD~ii~~  191 (191)
T TIGR00493       160 SLEQIEKDTERDFFMSAEEAKEYGLIDSVLTR  191 (191)
T ss_pred             CHHHHHHHhhCCccCcHHHHHHcCCccEEecC
Confidence            99999999999999999999999999999863

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=1.2e-36  Score=221.04  Aligned_cols=114  Identities=75%  Similarity=1.143  Sum_probs=110.3

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |++++.||+|+|.|.|+|+|++|+++|++++|++.|||++|||+|+++..|++.+++.++++++++++.+.++|+++||+
T Consensus        85 i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~  164 (200)
T PRK00277         85 MQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQ  164 (200)
T ss_pred             HHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            57889999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccCC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK  114 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~~  114 (114)
                      +.++++++|++|+||||+||++|||||+|++.++
T Consensus       165 ~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~  198 (200)
T PRK00277        165 PLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRK  198 (200)
T ss_pred             CHHHHHHHhhCCccccHHHHHHcCCccEEeecCC
Confidence            9999999999999999999999999999998763

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=1.9e-36  Score=215.92  Aligned_cols=113  Identities=43%  Similarity=0.710  Sum_probs=105.1

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |+.++.||+|+|.|.|+|+|++|+++|++++|++.|+|+||+|+|+.+..|+..++++.+++++++++.+.++|+++||+
T Consensus        70 i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~  149 (182)
T PF00574_consen   70 IRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGL  149 (182)
T ss_dssp             HHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      ++++|.++|++++||||+||++|||||+|++++
T Consensus       150 ~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~~  182 (182)
T PF00574_consen  150 SKEEIEELMDRDTWLSAEEALEYGIIDEIIESR  182 (182)
T ss_dssp             -HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS-
T ss_pred             cHHHHHHHHhCCccccHHHHHHcCCCCEeccCC
Confidence            999999999999999999999999999999875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=2.3e-35  Score=207.93  Aligned_cols=109  Identities=45%  Similarity=0.728  Sum_probs=106.1

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |++++.||+|++.|+|+|+|++|+++|++|+|++.|++++|||||+++..|++.|+++..+++++.++.+.++|+++||+
T Consensus        54 i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~  133 (162)
T cd07013          54 IKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQ  133 (162)
T ss_pred             HHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceee
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKI  109 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~I  109 (114)
                      +.++|+++|++++||||+||++|||||+|
T Consensus       134 ~~~~i~~~~~~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         134 SEEELHADLERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             CHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence            99999999999999999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=1.9e-35  Score=215.74  Aligned_cols=113  Identities=61%  Similarity=0.993  Sum_probs=108.5

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCC--ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPL--GGAQGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~--~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      |++++.||+|+|.|.|+|+|++|+++|++|+|++.|||++|||||+  ++..|++.+++.++++++++++.+.++|+++|
T Consensus        89 i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~t  168 (207)
T PRK12553         89 IQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHT  168 (207)
T ss_pred             HHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999  56799999999999999999999999999999


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      |++.+++++++++++||||+||++|||||+|++..
T Consensus       169 g~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~  203 (207)
T PRK12553        169 GQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSY  203 (207)
T ss_pred             CCCHHHHHHHHhcCccccHHHHHHcCCccEEcCch
Confidence            99999999999999999999999999999999864

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=3.3e-35  Score=208.52  Aligned_cols=109  Identities=75%  Similarity=1.133  Sum_probs=105.8

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |++++.||+|++.|+|+|+|++|+++|++|+|++.|||++|+|+|+.+..|+++++++.+++|+++++.+.++|+++||+
T Consensus        63 l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~  142 (171)
T cd07017          63 MQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQ  142 (171)
T ss_pred             HHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            46778999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceee
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKI  109 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~I  109 (114)
                      +.+++.++|++++||||+||++|||||+|
T Consensus       143 ~~~~i~~~~~~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         143 PLEKIEKDTDRDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             CHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence            99999999999999999999999999987

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.94  E-value=1.5e-26  Score=161.83  Aligned_cols=106  Identities=31%  Similarity=0.405  Sum_probs=102.5

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      +.++.||+|++.|.|+|+|++|+++|+.  |++.|+|+|++|+|+.+..|+..+++...++++++++.+.+.|++++|++
T Consensus        55 ~~~~~pvi~~v~g~a~s~g~~ia~a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~  132 (160)
T cd07016          55 KRHKGKVTVKIDGLAASAASVIAMAGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLS  132 (160)
T ss_pred             HhcCCCEEEEEcchHHhHHHHHHhcCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4678999999999999999999999998  99999999999999998899999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceee
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKI  109 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~I  109 (114)
                      .+++.+++.+++||+++||+++||||+|
T Consensus       133 ~~~i~~~~~~~~~l~a~eA~~~GliD~v  160 (160)
T cd07016         133 EEEISALMDAETWLTAQEAVELGFADEI  160 (160)
T ss_pred             HHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence            9999999999999999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.91  E-value=1.4e-24  Score=154.58  Aligned_cols=105  Identities=20%  Similarity=0.271  Sum_probs=93.8

Q ss_pred             CcccCCCeEEEEe---hhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCC-----HHHHHHHHHHHHHHHHHHHH
Q psy5228           1 MQFIKPNVSTLCI---GLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQ-----ASDIEIQAREILYLRQRLNE   72 (114)
Q Consensus         1 m~~~~~~V~t~~~---G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~-----~~~l~~~~~~l~~~~~~~~~   72 (114)
                      |++.+.||.|+|.   |.|+|+|++|+++|++  |+|.|+|+++.|+|..+ .|+     ..+.+....++.+++.    
T Consensus        54 i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~----  126 (172)
T cd07015          54 IQQSKIPVIIYVYPPGASAASAGTYIALGSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS----  126 (172)
T ss_pred             HHhcCcCEEEEEecCCCeehhHHHHHHHhcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH----
Confidence            3567899999999   9999999999999999  99999999999999754 355     5566777777777765    


Q ss_pred             HHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          73 ILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        73 ~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                       |++++|++.+.+++++++++|||++||++||+||.|.+++
T Consensus       127 -~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~  166 (172)
T cd07015         127 -LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDI  166 (172)
T ss_pred             -HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCH
Confidence             9999999999999999999999999999999999998764

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.90  E-value=2.7e-23  Score=145.05  Aligned_cols=106  Identities=30%  Similarity=0.518  Sum_probs=98.2

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQ--ASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~--~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      +.++.||.+++.|.|+|+|.+|+++|++  |++.|++.+++|+|+.+..+.  ..+.+...+.++.+.+.+.+.+++++|
T Consensus        54 ~~~~kpvva~~~g~~~s~g~~la~~~d~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~  131 (161)
T cd00394          54 QASRKPVIAYVGGQAASAGYYIATAANK--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRG  131 (161)
T ss_pred             HHhCCCEEEEECChhHHHHHHHHhCCCE--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4567899999999999999999999998  999999999999999765554  477888889999999999999999999


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceee
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKI  109 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~I  109 (114)
                      ++.+++.+.+.++.||+|+||+++||||+|
T Consensus       132 ~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         132 QTTEKLEEDIEKDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             CCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence            999999999999999999999999999986

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.79  E-value=8.4e-19  Score=125.87  Aligned_cols=109  Identities=18%  Similarity=0.164  Sum_probs=91.5

Q ss_pred             cccCCCeEEEEe---hhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCI---GLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~---G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ...+.||.+.+.   |.|+|+|++|+++||.  |++.|+|+|++|.|..+..+...+.....+.+..+.. ....|++++
T Consensus        55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  131 (187)
T cd07020          55 LASPVPVVVYVYPSGARAASAGTYILLAAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELR  131 (187)
T ss_pred             HhCCCCEEEEEecCCCCchhHHHHHHHhCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHc
Confidence            456899999998   9999999999999999  9999999999999985433332333444555555554 588899999


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      |.+.+.+++++.++.||+++||+++||+|+|++..
T Consensus       132 G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~  166 (187)
T cd07020         132 GRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL  166 (187)
T ss_pred             CCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence            99999999999999999999999999999998753

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.77  E-value=2.7e-18  Score=122.89  Aligned_cols=104  Identities=18%  Similarity=0.182  Sum_probs=88.4

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      ...+.||.+++.|.|+|+|++|+++|++  ++|.|++.++.|.|.....+...+     +.+......+.+.|++++|++
T Consensus        55 ~~~~~pvva~V~g~AaSaG~~ia~a~d~--i~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~  127 (178)
T cd07021          55 LNSPIPTIAYVNDRAASAGALIALAADE--IYMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRD  127 (178)
T ss_pred             HhCCCCEEEEECCchHHHHHHHHHhCCe--EEECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCC
Confidence            3567899999999999999999999998  999999999999999755443222     234444556677799999999


Q ss_pred             HHHHHhhhcCC-------------ceecHHHHHHcCcceeeccc
Q psy5228          82 VKKISQDTDRD-------------NFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        82 ~~~i~~~m~~~-------------~~lta~eA~~~GliD~Ii~~  112 (114)
                      .+.++.+++++             .|||++||+++|++|.|.+.
T Consensus       128 ~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~  171 (178)
T cd07021         128 PDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS  171 (178)
T ss_pred             HHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence            99999999999             59999999999999999875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.64  E-value=2.4e-15  Score=106.80  Aligned_cols=101  Identities=13%  Similarity=0.039  Sum_probs=89.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      ..+.||.+++.|.|+|.|..|+++|+.  |++.|++.|++|.++.+       ....-..++.+.+.+.+.+++..|++.
T Consensus        69 ~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~  139 (177)
T cd07014          69 AAGKPVVASGGGNAASGGYWISTPANY--IVANPSTLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTP  139 (177)
T ss_pred             hCCCCEEEEECCchhHHHHHHHHhCCE--EEECCCCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            357899999999999999999999998  99999999999988754       122334677888899999999999999


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      +.+.+++....|++++||+++||||+|...
T Consensus       140 ~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~  169 (177)
T cd07014         140 EQQIDKIAQGGVWTGQDAKANGLVDSLGSF  169 (177)
T ss_pred             HHhHHHhcCcCeEeHHHHHHcCCcccCCCH
Confidence            999999999999999999999999999763

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.43  E-value=1.5e-12  Score=94.77  Aligned_cols=103  Identities=15%  Similarity=0.176  Sum_probs=81.4

Q ss_pred             CCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCc---------------------c--------CCC-CHHH
Q psy5228           6 PNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLG---------------------G--------AQG-QASD   55 (114)
Q Consensus         6 ~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~---------------------~--------~~G-~~~~   55 (114)
                      .||.+++.|.|+|.|..|+++|++  |++.|++.+....+..                     +        +.. +..+
T Consensus        62 kpvia~v~g~a~s~g~~la~aaD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~  139 (207)
T TIGR00706        62 KPVVASMGGVAASGGYYIAMAADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEE  139 (207)
T ss_pred             CCEEEEECCccchHHHHHHhcCCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHH
Confidence            899999999999999999999998  9999998753322211                     1        001 1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          56 IEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        56 l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                      -+..-..|+.+.+.+.+.+++.-|++.++++++++... ++++||+++||||+|..
T Consensus       140 ~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~-~~~~~A~~~gLvD~i~~  194 (207)
T TIGR00706       140 RDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRV-FTGRQALKLRLVDKLGT  194 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCc-ccHHHHHHcCCCcccCC
Confidence            34444577788888999999999999999999988765 59999999999999975

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.42  E-value=1.6e-12  Score=94.45  Aligned_cols=105  Identities=18%  Similarity=0.187  Sum_probs=84.4

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCcee------eee------------cCCccCCC------------CH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRI------MIH------------QPLGGAQG------------QA   53 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~------miH------------~p~~~~~G------------~~   53 (114)
                      .+.||.+++.|.|+|+|..|+++|++  |++.|+|.+      +.|            +|.....|            +.
T Consensus        65 ~~kpvia~v~g~~~s~g~~lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~  142 (208)
T cd07023          65 AKKPVVASMGDVAASGGYYIAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTE  142 (208)
T ss_pred             cCCcEEEEECCcchhHHHHHHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCH
Confidence            36799999999999999999999998  999999987      444            22111111            22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          54 SDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        54 ~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                      .+-+.....|+.+.+.+.+.+++..|++.+++.++.+...| ++++|+++||||+|..
T Consensus       143 ~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~-~a~~A~~~gLiD~i~~  199 (208)
T cd07023         143 EERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVW-TGRQALELGLVDELGG  199 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEE-EHHHHHHcCCCcccCC
Confidence            34455566788889999999999999999999998887665 7999999999999975

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.38  E-value=5.9e-12  Score=91.99  Aligned_cols=103  Identities=15%  Similarity=0.158  Sum_probs=82.9

Q ss_pred             CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCcee------eeecCCcc------------CCC------------CHH
Q psy5228           5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRI------MIHQPLGG------------AQG------------QAS   54 (114)
Q Consensus         5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~------miH~p~~~------------~~G------------~~~   54 (114)
                      +.||.+++.|.|+|.|..++++|++  +++.|++.+      +.|.....            ..|            +..
T Consensus        73 ~KpViA~v~g~a~s~gy~lA~~aD~--i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~  150 (214)
T cd07022          73 GKPIVAFVNGLAASAAYWIASAADR--IVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDE  150 (214)
T ss_pred             CCCEEEEECCchhhHHHHHHhcCCE--EEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHH
Confidence            3899999999999999999999998  999999985      33332100            011            233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          55 DIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        55 ~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                      +-+..-+.|+.+.+.+.+.+++..|++.+++.+.+  ...+++++|+++||||+|..
T Consensus       151 ~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~  205 (214)
T cd07022         151 ARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGT  205 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCC
Confidence            44555667788899999999999999999999888  66689999999999999975

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.33  E-value=2.9e-11  Score=88.26  Aligned_cols=107  Identities=12%  Similarity=0.015  Sum_probs=83.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCC---------------------c-c---CC-C---CH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPL---------------------G-G---AQ-G---QA   53 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~---------------------~-~---~~-G---~~   53 (114)
                      ..+.||.+++.|.|+|.|..|+++|+.  +++.|++.+...-..                     . +   .. .   +.
T Consensus        68 ~~~kpVia~v~g~a~s~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~  145 (211)
T cd07019          68 AAGKPVVVSAGGAAASGGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPP  145 (211)
T ss_pred             hCCCCEEEEECCeehhHHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCH
Confidence            357899999999999999999999998  999999887433211                     1 1   00 0   12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          54 SDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        54 ~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .+-+.....++.+.+.+.+..++..+++++++.+.. ++.+++++||+++||||+|...
T Consensus       146 e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~-~~~~~~~~~A~~~GLvD~i~~~  203 (211)
T cd07019         146 EAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIA-QGHVWTGQDAKANGLVDSLGDF  203 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhc-CCcEEeHHHHHHcCCcccCCCH
Confidence            222233456788889999999999999999998865 4679999999999999998753

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=99.17  E-value=8.3e-10  Score=76.98  Aligned_cols=105  Identities=21%  Similarity=0.212  Sum_probs=78.5

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCC---------------------cc-------CCC--CH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPL---------------------GG-------AQG--QA   53 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~---------------------~~-------~~G--~~   53 (114)
                      .+.||.+++.|.++|.+=+|+++|++  .++.|.+.+...-..                     .+       ...  +.
T Consensus         5 ~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~   82 (154)
T PF01343_consen    5 SGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE   82 (154)
T ss_dssp             TT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred             cCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence            46799999999999999999999998  999999987765421                     11       011  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          54 SDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        54 ~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                      .+-+..-+.|+.+.+.+.+..++.-|++.+++.++.+. ..|++++|+++||||+|..
T Consensus        83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~  139 (154)
T PF01343_consen   83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGT  139 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCC
Confidence            34444556778888899999999999999999998877 7789999999999999975

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.17  E-value=3.8e-10  Score=93.31  Aligned_cols=105  Identities=14%  Similarity=0.074  Sum_probs=86.2

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCcee------eeecC------------C---cc-------C-CCCHH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRI------MIHQP------------L---GG-------A-QGQAS   54 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~------miH~p------------~---~~-------~-~G~~~   54 (114)
                      .+.||.+.+.|.|+|.|-.|+++|++  +++.|++.+      +.+..            .   ++       . ..+..
T Consensus       377 ~gKPVva~~~g~aaSggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~  454 (584)
T TIGR00705       377 RGKPVIVSMGAMAASGGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAE  454 (584)
T ss_pred             CCCcEEEEECCccccHHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHH
Confidence            35799999999999999999999998  999999976      54421            0   00       1 12455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          55 DIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        55 ~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                      +.+.....++...+.+.+..++..|++.++++.+.+...| +++||+++||||+|..
T Consensus       455 ~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~-tg~eA~~~GLVD~ig~  510 (584)
T TIGR00705       455 DQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVW-TGEDAVSNGLVDALGG  510 (584)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCc-CHHHHHHcCCcccCCC
Confidence            6667777888889999999999999999999998887666 9999999999999854

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.01  E-value=4.5e-09  Score=77.22  Aligned_cols=104  Identities=14%  Similarity=0.050  Sum_probs=82.0

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---------------------C---CC--------
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---------------------A---QG--------   51 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---------------------~---~G--------   51 (114)
                      .+.||.+++.| |+|.+-+|+++|++  +++.|++.+.+.-+...                     -   .+        
T Consensus        77 ~~kpVia~~~~-~~sggy~lasaad~--I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~  153 (222)
T cd07018          77 SGKPVIAYADG-YSQGQYYLASAADE--IYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDM  153 (222)
T ss_pred             hCCeEEEEeCC-CCchhhhhhhhCCE--EEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccC
Confidence            35799999887 89999999999998  99999999999743311                     0   01        


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          52 QASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        52 ~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                      +..+-+..-+.++.+.+.+.+..++.-+++.+++++..+ ...+++++|++.||||+|..
T Consensus       154 s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~  212 (222)
T cd07018         154 SPEAREQTQALLDSLWDQYLADVAASRGLSPDALEALID-LGGDSAEEALEAGLVDGLAY  212 (222)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCc
Confidence            112223334566778888999999999999999998877 66889999999999999875

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=98.58  E-value=2e-07  Score=66.15  Aligned_cols=88  Identities=17%  Similarity=0.158  Sum_probs=66.7

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|..+++++|.  |++.++++|.+..+..+..   |....+                  .++.|
T Consensus        91 ~~~~p~Ia~v~G~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~~p~~g~~~~l------------------~~~~g  150 (195)
T cd06558          91 RLPKPVIAAVNGAALGGGLELALACDI--RIAAEDAKFGLPEVKLGLVPGGGGTQRL------------------PRLVG  150 (195)
T ss_pred             cCCCCEEEEECCeeecHHHHHHHhCCE--EEecCCCEEechhhhcCCCCCCcHHHHH------------------HHHhC
Confidence            468899999999999999999999998  9999999999888765532   332222                  11112


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        .....+++-....++++||+++||+|++++.
T Consensus       151 --~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~  181 (195)
T cd06558         151 --PARARELLLTGRRISAEEALELGLVDEVVPD  181 (195)
T ss_pred             --HHHHHHHHHcCCccCHHHHHHcCCCCeecCh
Confidence              3333444455788899999999999999875

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.7e-07  Score=74.97  Aligned_cols=103  Identities=18%  Similarity=0.190  Sum_probs=81.6

Q ss_pred             ccCCCeEEEEe---hhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCI---GLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~---G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||+.++.   +.|+|+||+|+++++.  -+|.|++.+---+|-... |++.+-+.    ..+......+-.++.-|
T Consensus        83 ~s~vPV~~yv~p~ga~AaSAGtyI~m~~hi--aaMAPgT~iGaa~Pi~~~-g~~~~~~~----~~n~~~ay~~~~A~~~g  155 (436)
T COG1030          83 NSPVPVIGYVVPDGARAASAGTYILMATHI--AAMAPGTNIGAATPIAGG-GTSAKEAN----TTNAAVAYIRSLAEERG  155 (436)
T ss_pred             cCCCCEEEEEcCCCcchhchhhHHHHhcCh--hhhCCCCcccccceecCC-CCCccchh----hHHHHHHHHHHHHHHcC
Confidence            45778888776   5799999999999998  899999999999997543 22211111    33334455667888999


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      +..+-.+++.+++.-++++||.++|+||-|-.+
T Consensus       156 RN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~  188 (436)
T COG1030         156 RNPTWAERFVTENLSLTAEEALRQGVIDLIARD  188 (436)
T ss_pred             CChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence            999999999999999999999999999987653

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.54  E-value=7.2e-07  Score=69.00  Aligned_cols=103  Identities=19%  Similarity=0.145  Sum_probs=77.8

Q ss_pred             CeEEEEehhhhhHHHHHHhcCCCCcEEecCCceee------eecCC-----------------------ccCCCCHH-HH
Q psy5228           7 NVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIM------IHQPL-----------------------GGAQGQAS-DI   56 (114)
Q Consensus         7 ~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~m------iH~p~-----------------------~~~~G~~~-~l   56 (114)
                      ||++.+-++|||.|.+|.+++++  .++.|+|.+-      .|...                       +.+..... +-
T Consensus       130 PV~v~v~~~AASGGY~IA~aAd~--I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~  207 (317)
T COG0616         130 PVVVSVGGYAASGGYYIALAADK--IVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEER  207 (317)
T ss_pred             CEEEEECCeecchhhhhhccCCE--EEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHH
Confidence            89999999999999999999998  9999998653      22210                       01111222 23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          57 EIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        57 ~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      +..-..++...+.+.+..++..+.+.++ .........+++++|++.||||++.+.
T Consensus       208 ~~~q~~~~e~y~~F~~~V~~~R~~~~~~-~~~~a~g~v~~g~~A~~~gLVDelg~~  262 (317)
T COG0616         208 EILQKEIDETYDEFVDKVAEGRGLSDEA-VDKLATGRVWTGQQALELGLVDELGGL  262 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHhccceecHHHhhhcCCchhcCCH
Confidence            3333567777888899999999999999 555566777799999999999998753

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.41  E-value=5.8e-06  Score=64.47  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=71.5

Q ss_pred             CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCc---------------------c--------CCC-CHH
Q psy5228           5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLG---------------------G--------AQG-QAS   54 (114)
Q Consensus         5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~---------------------~--------~~G-~~~   54 (114)
                      +.||++.+.++|+|.|=+|+++|++  .++.|.|.+...-+..                     |        +.. +..
T Consensus       154 ~kpVva~v~~~AASggY~iAsaAD~--I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see  231 (330)
T PRK11778        154 GIPLTVAVDKVAASGGYMMACVADK--IIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEE  231 (330)
T ss_pred             CCCEEEEECCchhhHHHHHHHhCCE--EEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHH
Confidence            4699999999999999999999998  9999998765443211                     0        001 122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          55 DIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        55 ~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      +-+..-+.|+...+.+.+..++.-+  ..++++..+. ..+++++|+++||||+|...
T Consensus       232 ~Re~~q~~Ld~~y~~F~~~Va~~R~--~l~~~~va~G-~v~~g~~Al~~GLVD~Ig~~  286 (330)
T PRK11778        232 GREKFREELEETHQLFKDFVQRYRP--QLDIDKVATG-EHWYGQQALELGLVDEIQTS  286 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC--cCCHHHHHhC-CCcCHHHHHHCCCCCcCCCH
Confidence            3334445666677777777777553  2334444444 45799999999999998753

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=98.40  E-value=1e-06  Score=65.87  Aligned_cols=88  Identities=16%  Similarity=-0.010  Sum_probs=67.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+-|.|.+.|.-|++++|-  |++.++++|.+-...-|..|-..-                  +.+..|  .
T Consensus        95 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~~~------------------l~~~~g--~  152 (257)
T PRK06495         95 ECAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAGGGKH------------------AMRLFG--H  152 (257)
T ss_pred             hCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCccccHHH------------------HHHHhC--H
Confidence            467899999999999999999999998  999999998886666555433211                  112222  3


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ....+++-....++++||+++||||+|+++
T Consensus       153 ~~a~~lll~g~~~~a~eA~~~GLv~~vv~~  182 (257)
T PRK06495        153 SLTRRMMLTGYRVPAAELYRRGVIEACLPP  182 (257)
T ss_pred             HHHHHHHHcCCeeCHHHHHHcCCcceecCH
Confidence            344556666778999999999999999864

>PRK10949 protease 4; Provisional

Probab=98.36  E-value=5.7e-06  Score=69.15  Aligned_cols=104  Identities=13%  Similarity=0.125  Sum_probs=78.0

Q ss_pred             CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCcee------eeecCC-------------------cc---CCC-CHHH
Q psy5228           5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRI------MIHQPL-------------------GG---AQG-QASD   55 (114)
Q Consensus         5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~------miH~p~-------------------~~---~~G-~~~~   55 (114)
                      +.||.+..-++|+|.|=+|++++++  .++.|++..      +.|.-.                   ..   ... +..+
T Consensus       396 gKPVvas~~~~aASggY~iA~aad~--I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~  473 (618)
T PRK10949        396 GKPVVVSMGGMAASGGYWISTPANY--IVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEF  473 (618)
T ss_pred             CCcEEEEECCCCccHHHHHHHhcCE--EEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHH
Confidence            4799999999999999999999998  999997653      333210                   00   001 1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          56 IEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        56 l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                      -+..-..++..-+.+.+..++.-+++.+++++.. +..-+|+++|++.||||++..
T Consensus       474 ~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia-~Grv~tg~~A~~~GLVD~lG~  528 (618)
T PRK10949        474 QQMMQLSIENGYKRFITLVADSRHKTPEQIDKIA-QGHVWTGQDAKANGLVDSLGD  528 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHh-cCCcccHHHHHHcCCCccCCC
Confidence            3334456677778889999999999999998754 556789999999999999865

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=98.35  E-value=1.5e-06  Score=63.96  Aligned_cols=91  Identities=19%  Similarity=0.243  Sum_probs=63.3

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCC-ceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPN-SRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~-s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      ..++.||.+.+.|.|.+.|.-|++++|.  |++.++ ++|.+-....|.. ... -               ...+.++.|
T Consensus        88 ~~~~kPvIAav~G~a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~Gl~~~~~-~---------------~~~l~~~~g  149 (229)
T PRK06213         88 LSHPKPVIVACTGHAIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIGMTMPHA-A---------------IELARDRLT  149 (229)
T ss_pred             HcCCCCEEEEEcCeeeHHHHHHHHhCCe--eeEecCCcEEECchhhhCCcCChH-H---------------HHHHHHHcC
Confidence            3568999999999999999999999998  999999 8877644443321 110 0               001111212


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        .....+++-....++++||+++||||+|+..
T Consensus       150 --~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~  180 (229)
T PRK06213        150 --PSAFQRAVINAEMFDPEEAVAAGFLDEVVPP  180 (229)
T ss_pred             --HHHHHHHHHcCcccCHHHHHHCCCceeccCh
Confidence              1223344556678999999999999999864

>PRK05869 enoyl-CoA hydratase; Validated

Probab=98.35  E-value=1.7e-06  Score=63.60  Aligned_cols=91  Identities=20%  Similarity=0.192  Sum_probs=65.0

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      ..++.||.+.+.|.|.+.|..+++++|.  |++.++++|-+-...-|.. +-..                ...+.+..| 
T Consensus        96 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~----------------~~~l~~~ig-  156 (222)
T PRK05869         96 AAIPKPTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEILAGLAPSGDG----------------MARLTRAAG-  156 (222)
T ss_pred             HhCCCCEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchhccCCCCCccH----------------HHHHHHHhC-
Confidence            3568899999999999999999999998  9999999887765554431 1100                011112222 


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                       .....+++-...+++++||+++||+|+|++.
T Consensus       157 -~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  187 (222)
T PRK05869        157 -PSRAKELVFSGRFFDAEEALALGLIDEMVAP  187 (222)
T ss_pred             -HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCc
Confidence             2233445555668999999999999999864

>PRK08139 enoyl-CoA hydratase; Validated

Probab=98.32  E-value=2.2e-06  Score=64.46  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=65.3

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      ..++.||.+.+.|.|.+.|.-+++++|-  |++.++++|.+-....|......-.     .|           .+..|  
T Consensus       101 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~~~-----~l-----------~r~vG--  160 (266)
T PRK08139        101 VALPQPVIARVHGIATAAGCQLVASCDL--AVAADTARFAVPGVNIGLFCSTPMV-----AL-----------SRNVP--  160 (266)
T ss_pred             HhCCCCEEEEECceeeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCCCCCccHH-----HH-----------HHHhC--
Confidence            3568999999999999999999999998  9999999987755554533211100     01           11122  


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ...-.+++-....++++||+++||||+|+++
T Consensus       161 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  191 (266)
T PRK08139        161 RKQAMEMLLTGEFIDAATAREWGLVNRVVPA  191 (266)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCccEeeCh
Confidence            2333455555677899999999999999875

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=98.32  E-value=1.9e-06  Score=65.15  Aligned_cols=89  Identities=16%  Similarity=0.206  Sum_probs=65.9

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC----CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ----GQASDIEIQAREILYLRQRLNEILSEK   77 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~----G~~~~l~~~~~~l~~~~~~~~~~ya~~   77 (114)
                      ..++.||.+.+-|.|.+.|.-|++++|-  |++.++++|.+..+..|..    |...-+.                  +.
T Consensus       110 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~------------------~~  169 (277)
T PRK08258        110 RACPQPIIAAVDGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGLAGADMGACALLP------------------RI  169 (277)
T ss_pred             HhCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEEeccccccCcCCCCchHHHHHH------------------HH
Confidence            3568899999999999999999999998  9999999998877765543    2211111                  11


Q ss_pred             hCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .|  .....+++-....++++||+++||||+|++.
T Consensus       170 vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  202 (277)
T PRK08258        170 IG--QGRASELLYTGRSMSAEEGERWGFFNRLVEP  202 (277)
T ss_pred             hC--HHHHHHHHHcCCCCCHHHHHHcCCCcEecCH
Confidence            12  1223344445678999999999999999864

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=98.31  E-value=2.9e-06  Score=63.47  Aligned_cols=90  Identities=13%  Similarity=0.128  Sum_probs=64.1

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-Q--GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~--G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-+++++|.  |++.++++|.+-....|. -  |-..-+                  .+..
T Consensus        89 ~~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~i  148 (255)
T PRK08150         89 QYGRVPVIAALHGAVVGGGLELASAAHI--RVADESTYFALPEGQRGIFVGGGGSVRV------------------PRLI  148 (255)
T ss_pred             HhCCCCEEEEECCEEEcHHHHHHHhCCE--EEEeCCCEEeccccccCCCCCccHHHHH------------------HHHh
Confidence            3568999999999999999999999998  999999988765544342 1  211111                  1112


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      |  ...-.+++-....|+++||+++||||+|++..
T Consensus       149 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  181 (255)
T PRK08150        149 G--VARMTDMMLTGRVYDAQEGERLGLAQYLVPAG  181 (255)
T ss_pred             C--HHHHHHHHHcCCcCCHHHHHHcCCccEeeCch
Confidence            2  22233444455679999999999999998753

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=98.29  E-value=2.2e-06  Score=64.21  Aligned_cols=91  Identities=14%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      ..++.||.+.+-|.|.+.|.-|.++||-  |++.++++|.+=....|..+-..                ...+.+..|  
T Consensus        97 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~p~~~~----------------~~~l~~~iG--  156 (256)
T PRK06143         97 RHFPVPVIARIPGWCLGGGLELAAACDL--RIAAHDAQFGMPEVRVGIPSVIH----------------AALLPRLIG--  156 (256)
T ss_pred             HhCCCCEEEEECCEEeehhHHHHHhCCE--EEecCCCEEeCCccccCCCCccH----------------HHHHHHhcC--
Confidence            3568899999999999999999999998  99999998877444434311100                011222222  


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .....+++-....++++||+++||||+|+++
T Consensus       157 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  187 (256)
T PRK06143        157 WARTRWLLLTGETIDAAQALAWGLVDRVVPL  187 (256)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCcCeecCH
Confidence            2334455556678999999999999999874

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=98.29  E-value=2.3e-06  Score=63.87  Aligned_cols=89  Identities=11%  Similarity=0.054  Sum_probs=65.0

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||-  |++.++++|..=...-|..|...-                  +.+..|  
T Consensus        91 ~~~~kPvIAav~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g~~~~------------------l~~~vg--  148 (249)
T PRK07938         91 YECAVPVIAAVHGFCLGGGIGLVGNADV--IVASDDATFGLPEVDRGALGAATH------------------LQRLVP--  148 (249)
T ss_pred             HhCCCCEEEEEcCEEeehHHHHHHhCCE--EEEeCCCEeeCccceecCchhHHH------------------HHHhcC--
Confidence            3568899999999999999999999998  999999988774444444332111                  111112  


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ...-.+++-....++++||+++||||+|+++
T Consensus       149 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  179 (249)
T PRK07938        149 QHLMRALFFTAATITAAELHHFGSVEEVVPR  179 (249)
T ss_pred             HHHHHHHHHhCCcCCHHHHHHCCCccEEeCH
Confidence            2333445556678999999999999999864

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=98.28  E-value=2.9e-06  Score=63.42  Aligned_cols=90  Identities=14%  Similarity=0.024  Sum_probs=63.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+-|.|.+.|..|++++|.  |++.++++|.+....-|....   .-             ...+..+.|  .
T Consensus        94 ~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~---~~-------------~~~l~~~vg--~  153 (255)
T PRK07112         94 TGPYVTIAHVRGKVNAGGIGFVAASDI--VIADETAPFSLSELLFGLIPA---CV-------------LPFLIRRIG--T  153 (255)
T ss_pred             cCCCCEEEEEecEEEcchhHHHHcCCE--EEEcCCCEEeCchhhhccCcc---hh-------------hHHHHHHhC--H
Confidence            468899999999999999999999998  999999999776555443211   00             001112222  2


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ....+++-...-++++||+++||||+|+++
T Consensus       154 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  183 (255)
T PRK07112        154 QKAHYMTLMTQPVTAQQAFSWGLVDAYGAN  183 (255)
T ss_pred             HHHHHHHHhCCcccHHHHHHcCCCceecCc
Confidence            233344445567999999999999999864

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=98.26  E-value=4.2e-06  Score=62.47  Aligned_cols=89  Identities=12%  Similarity=0.161  Sum_probs=64.2

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      +.++.||.+.+.|.|.+.|..+++++|-  |++.++++|......-|.   .|-...+                  .+..
T Consensus        89 ~~~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v  148 (255)
T PRK06563         89 RRLSKPLVVAVQGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRGILPFGGATLRF------------------PQAA  148 (255)
T ss_pred             hcCCCCEEEEEcCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcCCCCCccHHHHH------------------HHHh
Confidence            4578999999999999999999999998  999999998876655442   1221111                  1111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       149 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  180 (255)
T PRK06563        149 G--WGNAMRYLLTGDEFDAQEALRLGLVQEVVPP  180 (255)
T ss_pred             h--HHHHHHHHHcCCCcCHHHHHHcCCCcEeeCH
Confidence            2  1222344445567899999999999999864

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=98.26  E-value=3.4e-06  Score=62.98  Aligned_cols=89  Identities=18%  Similarity=0.119  Sum_probs=65.3

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|..-...-|..   |-..-                  +.+..
T Consensus        89 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~~~i  148 (255)
T PRK09674         89 QAFNKPLIAAVNGYALGAGCELALLCDI--VIAGENARFGLPEITLGIMPGAGGTQR------------------LIRSV  148 (255)
T ss_pred             HhCCCCEEEEECCEeehHHHHHHHhCCE--EEecCCCEEeCchhhcCCCCCccHHHH------------------HHHHh
Confidence            3568999999999999999999999998  9999999998766654431   21111                  11222


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....|+++||+++||||+|+++
T Consensus       149 g--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  180 (255)
T PRK09674        149 G--KSLASQMVLTGESITAQQAQQAGLVSEVFPP  180 (255)
T ss_pred             C--HHHHHHHHHcCCccCHHHHHHcCCCcEecCh
Confidence            2  2233444445567999999999999999865

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=98.24  E-value=5.1e-06  Score=62.11  Aligned_cols=88  Identities=11%  Similarity=0.052  Sum_probs=65.0

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      ..+.||.+.+.|.|.+.|..|++++|-  |++.++++|-+....-|..   |-..-+                  .++. 
T Consensus        96 ~~~kpvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v-  154 (260)
T PRK07511         96 AFPKPVIAAVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVKVGLTPDGGGSWFL------------------ARAL-  154 (260)
T ss_pred             cCCCCEEEEECCeeehHHHHHHHhCCE--EEeeCCCEEeccccccCcCCCchHHHHH------------------HHHh-
Confidence            468899999999999999999999998  9999999988766554432   211111                  1111 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                       ......+++-....++++||+++||||+|++.
T Consensus       155 -g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  186 (260)
T PRK07511        155 -PRQLATELLLEGKPISAERLHALGVVNRLAEP  186 (260)
T ss_pred             -CHHHHHHHHHhCCCCCHHHHHHcCCccEeeCc
Confidence             22334445555678999999999999999865

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=98.24  E-value=3.6e-06  Score=63.13  Aligned_cols=88  Identities=10%  Similarity=0.066  Sum_probs=65.1

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      +.++.||.+.+.|.|.+.|.-|++++|.  |++.++++|.+-...-|..   |-.. +                  ..+ 
T Consensus        97 ~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~p~~g~~~-~------------------~~~-  154 (262)
T PRK07468         97 NDLPKPLIGRIQGQAFGGGVGLISVCDV--AIAVSGARFGLTETRLGLIPATISPY-V------------------VAR-  154 (262)
T ss_pred             HcCCCCEEEEECCEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccCCCcccchhh-H------------------Hhh-
Confidence            4578999999999999999999999998  9999999877655543321   1110 1                  112 


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                       .......+++-...-++++||+++||||+|++.
T Consensus       155 -vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  187 (262)
T PRK07468        155 -MGEANARRVFMSARLFDAEEAVRLGLLSRVVPA  187 (262)
T ss_pred             -ccHHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence             222334456666778999999999999999864

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=98.24  E-value=4.4e-06  Score=62.53  Aligned_cols=90  Identities=12%  Similarity=0.019  Sum_probs=63.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+.|.|.+.|.-|++++|-  |++.++++|..-...-|....   .-  .           ..+.+..|  .
T Consensus        97 ~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~---~g--~-----------~~l~~~vg--~  156 (262)
T PRK05995         97 RCPKPVIARVHGDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLGLIPA---TI--S-----------PYVIRAMG--E  156 (262)
T ss_pred             cCCCCEEEEECCEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccccCcc---ch--H-----------HHHHHHhC--H
Confidence            468899999999999999999999998  999999998775554443211   00  0           00111222  2


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..-.+++-...-++++||+++||||+|+..
T Consensus       157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  186 (262)
T PRK05995        157 RAARRYFLTAERFDAAEALRLGLVHEVVPA  186 (262)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCCCeecCH
Confidence            333344445566899999999999999853

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=98.23  E-value=4.6e-06  Score=62.49  Aligned_cols=88  Identities=14%  Similarity=0.125  Sum_probs=62.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-+++++|-  |++.++++|..=...-|.   .|....+.                  ++. 
T Consensus        92 ~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~p~~g~~~~l~------------------~~v-  150 (261)
T PRK03580         92 DLDKPVIAAVNGYAFGGGFELALAADF--IVCADNASFALPEAKLGIVPDSGGVLRLP------------------KRL-  150 (261)
T ss_pred             hCCCCEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeCcccccCcCCCccHHHHHH------------------HHh-
Confidence            468899999999999999999999998  999999988664443332   12211111                  111 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                       ......+++-....++++||+++||||+|++.
T Consensus       151 -g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  182 (261)
T PRK03580        151 -PPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ  182 (261)
T ss_pred             -CHHHHHHHHHhCCccCHHHHHHcCCCcEecCH
Confidence             22333444445568999999999999999874

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.22  E-value=9.8e-06  Score=61.66  Aligned_cols=101  Identities=18%  Similarity=0.195  Sum_probs=66.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCH---HH---------------HHH-HHHHH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQA---SD---------------IEI-QAREI   63 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~---~~---------------l~~-~~~~l   63 (114)
                      ..+.++++++-..|.|+||+|++++++  .+|.|+|.+.-=.|..+-.-.+   ..               +.. .-+.+
T Consensus       116 ~~~~~v~v~VP~~A~SAGTlIALaADe--IvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi  193 (285)
T PF01972_consen  116 EHPAKVTVIVPHYAMSAGTLIALAADE--IVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAI  193 (285)
T ss_pred             hCCCCEEEEECcccccHHHHHHHhCCe--EEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHH
Confidence            346799999999999999999999999  9999999998777764311110   00               111 11334


Q ss_pred             HHHHHHHHHHHHHHhCC-CHHHHHhhhcC-----CceecHHHHHHcCc
Q psy5228          64 LYLRQRLNEILSEKTGH-SVKKISQDTDR-----DNFMSAKMAMEYCL  105 (114)
Q Consensus        64 ~~~~~~~~~~ya~~tg~-s~~~i~~~m~~-----~~~lta~eA~~~Gl  105 (114)
                      ...++...+++..+.+. -.++|.+.+..     |.-+|++||+++||
T Consensus       194 ~q~~~~v~~lL~~~~~~eka~~ia~~L~~g~~tHdypi~~eea~~lGL  241 (285)
T PF01972_consen  194 RQVREFVKELLKDKMDEEKAEEIAEKLSSGKWTHDYPITVEEAKELGL  241 (285)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCCHHHHHHcCC
Confidence            44455555555444321 23344445544     45589999999997

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PLN02888 enoyl-CoA hydratase

Probab=98.21  E-value=2.7e-06  Score=64.03  Aligned_cols=89  Identities=11%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|..|++++|.  |++.++++|..=...-|..   |-..-+                  .+..
T Consensus        96 ~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v  155 (265)
T PLN02888         96 ERCRKPIIGAINGFAITAGFEIALACDI--LVASRGAKFIDTHAKFGIFPSWGLSQKL------------------SRII  155 (265)
T ss_pred             HhCCCCEEEEECCeeechHHHHHHhCCE--EEecCCCEecCccccccCCCCccHhhHH------------------HHHh
Confidence            3568899999999999999999999998  9999999887644433321   211111                  1112


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       156 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  187 (265)
T PLN02888        156 G--ANRAREVSLTAMPLTAETAERWGLVNHVVEE  187 (265)
T ss_pred             C--HHHHHHHHHhCCccCHHHHHHcCCccEeeCh
Confidence            2  2223334444567899999999999999864

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=98.21  E-value=3.9e-06  Score=62.94  Aligned_cols=90  Identities=13%  Similarity=0.137  Sum_probs=64.8

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-+++++|.  |++.++++|.+..+.-|.   .|...-+.                  +..
T Consensus       100 ~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG~~p~~g~~~~l~------------------~~v  159 (266)
T PRK05981        100 RNLPCPIVTAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIGLVPDGGSTWLLP------------------RLV  159 (266)
T ss_pred             HhCCCCEEEEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcCCCCCccHHHHHH------------------HHh
Confidence            3568899999999999999999999998  999999999877776443   12211111                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      |  .....+++-....|+++||+++||||+|++..
T Consensus       160 g--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  192 (266)
T PRK05981        160 G--KARAMELSLLGEKLPAETALQWGLVNRVVDDA  192 (266)
T ss_pred             H--HHHHHHHHHhCCCcCHHHHHHcCCceEeeCHh
Confidence            1  12223333345679999999999999998753

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=98.20  E-value=2.6e-06  Score=62.89  Aligned_cols=89  Identities=16%  Similarity=0.106  Sum_probs=61.7

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-Q--GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~--G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|+.+++++|.  |++.+++.|.+-...-|. -  |-..-+..          .        .|
T Consensus        88 ~~~kp~Iaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r----------~--------~g  147 (245)
T PF00378_consen   88 NFPKPTIAAVNGHAVGGGFELALACDF--RIAAEDAKFGFPEVRLGIFPGAGGTFRLPR----------L--------IG  147 (245)
T ss_dssp             HSSSEEEEEESSEEETHHHHHHHHSSE--EEEETTTEEETGGGGGTSSSTSTHHHHHHH----------H--------HH
T ss_pred             hhhhheeecccccccccccccccccce--EEeecccceeeeecccCcccccccccccce----------e--------ee
Confidence            468899999999999999999999998  999999996655444332 1  22122111          1        11


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        .....+++-....++++||+++||||+|+++.
T Consensus       148 --~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~  179 (245)
T PF00378_consen  148 --PSRARELLLTGEPISAEEALELGLVDEVVPDE  179 (245)
T ss_dssp             --HHHHHHHHHHTCEEEHHHHHHTTSSSEEESGG
T ss_pred             --cccccccccccccchhHHHHhhcceeEEcCch
Confidence              11112222344678999999999999998764

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=98.19  E-value=7.9e-06  Score=61.17  Aligned_cols=88  Identities=15%  Similarity=0.183  Sum_probs=64.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-+++++|.  |++.++++|..-...-|..   |...-                  +.+..|
T Consensus        92 ~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~~~vg  151 (259)
T PRK06494         92 DLDKPIIAAVNGVAMGGGFELALACDL--IVAAENATFALPEPRVGLAALAGGLHR------------------LPRQIG  151 (259)
T ss_pred             cCCCCEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCCchHHHH------------------HHHHcC
Confidence            357899999999999999999999998  9999999988766654432   22111                  112222


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|+..
T Consensus       152 --~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~  182 (259)
T PRK06494        152 --LKRAMGMILTGRRVTAREGLELGFVNEVVPA  182 (259)
T ss_pred             --HHHHHHHHHcCCcCCHHHHHHcCCCcEecCH
Confidence              3333444555668999999999999999864

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=98.19  E-value=4.9e-06  Score=62.67  Aligned_cols=89  Identities=12%  Similarity=0.047  Sum_probs=65.7

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+.....|..   |-..-+.                  +..
T Consensus       103 ~~~~kPvIaav~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~v  162 (269)
T PRK06127        103 ADYAKPTIACIRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLGLGYGYDGVKNLV------------------DLV  162 (269)
T ss_pred             HhCCCCEEEEECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhCCCCCccHHHHHH------------------HHh
Confidence            3568899999999999999999999998  9999999998877664431   2211221                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  .....+++-....++++||+++||||+|++.
T Consensus       163 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  194 (269)
T PRK06127        163 G--PSAAKDLFYTARRFDAAEALRIGLVHRVTAA  194 (269)
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH
Confidence            2  2333444445567999999999999999864

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=98.19  E-value=6.2e-06  Score=62.57  Aligned_cols=92  Identities=11%  Similarity=0.031  Sum_probs=66.5

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      ..++.||.+.+-|.|.+.|.-|++++|.  |++.++++|.+-....|.. ...-               ....+.+..| 
T Consensus       104 ~~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~~p~~~---------------~~~~l~~~~G-  165 (278)
T PLN03214        104 LRSRLATVCAIRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALGIPVPKFW---------------ARLFMGRVID-  165 (278)
T ss_pred             HcCCCCEEEEEcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhCCCCCChh---------------HHHHHHHhcC-
Confidence            3567899999999999999999999998  9999999988755544431 1100               0112233333 


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                       ...-.+++-...-|+++||+++||||+|+..
T Consensus       166 -~~~a~~llltg~~~~a~eA~~~Glv~~vv~~  196 (278)
T PLN03214        166 -RKVAESLLLRGRLVRPAEAKQLGLIDEVVPA  196 (278)
T ss_pred             -HHHHHHHHHcCCccCHHHHHHcCCCcEecCh
Confidence             3444455556677999999999999999864

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=98.19  E-value=3.9e-06  Score=63.13  Aligned_cols=88  Identities=13%  Similarity=0.077  Sum_probs=66.0

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|++++|-  |++.++++|.+..+.-|.   .|-..-+..                  .  
T Consensus       106 ~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~------------------~--  163 (272)
T PRK06210        106 ALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRGLIAEHGISWILPR------------------L--  163 (272)
T ss_pred             hCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcCCCCCCchhhhhHh------------------h--
Confidence            468899999999999999999999998  999999999987766442   122111111                  1  


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .......+++-...-++++||+++||||+|+.+
T Consensus       164 ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  196 (272)
T PRK06210        164 VGHANALDLLLSARTFYAEEALRLGLVNRVVPP  196 (272)
T ss_pred             hCHHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence            123344555556677899999999999999864

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=98.19  E-value=3.9e-06  Score=62.76  Aligned_cols=88  Identities=16%  Similarity=0.107  Sum_probs=63.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+=...-|.   .|...-+                  .+..|
T Consensus        98 ~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~vG  157 (260)
T PRK05980         98 AFPKPVIAAVNGLAFGGGCEITEAVHL--AIASERALFAKPEIRLGMPPTFGGTQRL------------------PRLAG  157 (260)
T ss_pred             hCCCCEEEEEcCEEEhhhhHHhHhCCE--EEecCCCEecCcccccCCCCCchHhhHH------------------HhhcC
Confidence            468899999999999999999999998  999999988775544332   1221111                  11112


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|+++
T Consensus       158 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  188 (260)
T PRK05980        158 --RKRALELLLTGDAFSAERALEIGLVNAVVPH  188 (260)
T ss_pred             --HHHHHHHHHcCCccCHHHHHHcCCCCcccCH
Confidence              2223444445567999999999999999864

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=98.19  E-value=4.3e-06  Score=62.48  Aligned_cols=90  Identities=13%  Similarity=0.105  Sum_probs=64.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+.|.|.+.|.-|.+++|-  |++.++++|.+-...-|.....  .              ...+.+..|  .
T Consensus        87 ~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~--~--------------~~~l~~~vg--~  146 (251)
T TIGR03189        87 DSPVPILVAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQPEIVLGVFAPA--A--------------SCLLPERMG--R  146 (251)
T ss_pred             hCCCCEEEEecCeeeeHHHHHHHhCCE--EEEcCCCEEeCchhhcCCCCCc--h--------------HHHHHHHhC--H
Confidence            468899999999999999999999998  9999999887755443432110  0              001222233  2


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ....+++-...-++++||+++||||+|+++
T Consensus       147 ~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~  176 (251)
T TIGR03189       147 VAAEDLLYSGRSIDGAEGARIGLANAVAED  176 (251)
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceecCc
Confidence            334455545567999999999999999864

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=98.18  E-value=7.2e-06  Score=61.91  Aligned_cols=88  Identities=18%  Similarity=0.083  Sum_probs=63.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|++++|.  |++.++++|.+=.+.-|..   |-..-+                  .+..|
T Consensus       105 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~~~~~l------------------~~~vG  164 (273)
T PRK07396        105 TCPKPVIAMVAGYAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVGSFDGGYGASYL------------------ARIVG  164 (273)
T ss_pred             hCCCCEEEEECCEEehHHHHHHHhCCE--EEeeCCcEEecccccccccCCchHHHHH------------------HHHhh
Confidence            468899999999999999999999998  9999999988765654422   111111                  11112


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        .....+++-....++++||+++||||+|++.
T Consensus       165 --~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~  195 (273)
T PRK07396        165 --QKKAREIWFLCRQYDAQEALDMGLVNTVVPL  195 (273)
T ss_pred             --HHHHHHHHHhCCCcCHHHHHHcCCcCeecCH
Confidence              1223344445568999999999999999864

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=98.18  E-value=5.1e-06  Score=61.96  Aligned_cols=89  Identities=13%  Similarity=0.124  Sum_probs=63.2

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-+++++|.  |++.++++|.+....-|..   |-..-+..                  ..
T Consensus        93 ~~~~kp~Iaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~l~~------------------~~  152 (259)
T PRK06688         93 AALPKPVVAAVNGPAVGVGVSLALACDL--VYASESAKFSLPFAKLGLCPDAGGSALLPR------------------LI  152 (259)
T ss_pred             HcCCCCEEEEECCeeecHHHHHHHhCCE--EEecCCCEecCchhhcCCCCCcchhhHHHH------------------Hh
Confidence            3468899999999999999999999998  9999999998876654432   22111111                  11


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|+++
T Consensus       153 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~  184 (259)
T PRK06688        153 G--RARAAEMLLLGEPLSAEEALRIGLVNRVVPA  184 (259)
T ss_pred             h--HHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence            1  1122223333456999999999999999864

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=98.17  E-value=4.6e-06  Score=62.56  Aligned_cols=88  Identities=17%  Similarity=0.152  Sum_probs=63.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+-...-|..   |-..-+                  .+..|
T Consensus       101 ~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~p~~g~~~~l------------------~~~vG  160 (266)
T PRK09245        101 NLEVPVIAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLGLIPGDGGAWLL------------------PRIIG  160 (266)
T ss_pred             cCCCCEEEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccCcCCCcchhhhH------------------HHHhh
Confidence            468899999999999999999999998  9999999988755554432   221111                  11111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       161 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  191 (266)
T PRK09245        161 --MARAAEMAFTGDAIDAATALEWGLVSRVVPA  191 (266)
T ss_pred             --HHHHHHHHHcCCCcCHHHHHHcCCcceecCH
Confidence              1122334445568999999999999999864

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=98.17  E-value=8.1e-06  Score=61.31  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=64.0

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-Q--GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~--G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-+++++|-  |++.++++|.+-...-|. -  |-..-                  +.+..
T Consensus        91 ~~~~kPvIAaV~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~r~v  150 (258)
T PRK06190         91 PAMRKPVIGAINGAAVTGGLELALACDI--LIASERARFADTHARVGILPGWGLSVR------------------LPQKV  150 (258)
T ss_pred             HhCCCCEEEEECCEeecHHHHHHHhCCE--EEEeCCCEEECcccccCcCCCccHHHH------------------HHHHh
Confidence            3568899999999999999999999998  999999998764443332 1  11111                  11112


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|+++
T Consensus       151 G--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  182 (258)
T PRK06190        151 G--IGRARRMSLTGDFLDAADALRAGLVTEVVPH  182 (258)
T ss_pred             C--HHHHHHHHHhCCccCHHHHHHcCCCeEecCH
Confidence            2  3333445556668999999999999999864

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=98.16  E-value=6.2e-06  Score=61.77  Aligned_cols=89  Identities=18%  Similarity=0.106  Sum_probs=64.0

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+-.+.-|..   |-..-+.                  +..
T Consensus        94 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~p~~~~~~~l~------------------~~v  153 (259)
T TIGR01929        94 RTCPKPVIAMVNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKVGSFDGGYGSSYLA------------------RIV  153 (259)
T ss_pred             HhCCCCEEEEEcCEEehHHHHHHHhCCE--EEecCCCEecCcccccccCCCccHHHHHH------------------HHh
Confidence            3468899999999999999999999998  9999999998877765431   2211111                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-...-++++||+++||||+|++.
T Consensus       154 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  185 (259)
T TIGR01929       154 G--QKKAREIWFLCRQYDAEQALDMGLVNTVVPL  185 (259)
T ss_pred             H--HHHHHHHHHhCCccCHHHHHHcCCcccccCH
Confidence            1  1122333334457999999999999999864

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=98.16  E-value=7.7e-06  Score=61.18  Aligned_cols=90  Identities=11%  Similarity=0.071  Sum_probs=63.9

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|++++|-  |++.++++|.+-...-|..   |-..-+.                  +..
T Consensus        92 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~i  151 (258)
T PRK09076         92 SAFRGVSIAAINGYAMGGGLECALACDI--RIAEEQAQMALPEASVGLLPCAGGTQNLP------------------WLV  151 (258)
T ss_pred             HhCCCCEEEEECCEEecHHHHHHHhCCE--EEecCCCEeeCcccccCCCCCccHHHHHH------------------HHh
Confidence            3568899999999999999999999998  9999999988765554421   2211111                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      |  .....+++-....++++||+++||||+|++..
T Consensus       152 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  184 (258)
T PRK09076        152 G--EGWAKRMILCGERVDAATALRIGLVEEVVEKG  184 (258)
T ss_pred             C--HHHHHHHHHcCCcCCHHHHHHCCCCceecCch
Confidence            2  12223344445678999999999999998753

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=98.16  E-value=6.9e-06  Score=61.65  Aligned_cols=89  Identities=11%  Similarity=0.087  Sum_probs=63.8

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-C--CHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-G--QASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G--~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+=...-|.. +  -...                  +.++.
T Consensus        93 ~~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~g~~~~------------------l~~~v  152 (261)
T PRK11423         93 QKFPKPVIAMVEGSVWGGAFELIMSCDL--IIAASTSTFAMTPANLGVPYNLSGILN------------------FTNDA  152 (261)
T ss_pred             HhCCCCEEEEEecEEechHHHHHHhCCE--EEecCCCEecCchhhcCCCCCccHHHH------------------HHHHh
Confidence            4568899999999999999999999998  9999999887655544431 1  1111                  11111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|+++
T Consensus       153 g--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~  184 (261)
T PRK11423        153 G--FHIVKEMFFTASPITAQRALAVGILNHVVEV  184 (261)
T ss_pred             H--HHHHHHHHHcCCCcCHHHHHHcCCcCcccCH
Confidence            2  2333344445567999999999999999864

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=98.15  E-value=8.3e-06  Score=61.19  Aligned_cols=88  Identities=15%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCC-ccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPL-GGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~-~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+-|.|.+.|.-+++++|-  |++.++++|.+=... -|.   .|...                  .+.+..
T Consensus       100 ~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~~G~~p~~g~~~------------------~l~~~v  159 (262)
T PRK06144        100 QLRVPTIAAIAGACVGGGAAIAAACDL--RIATPSARFGFPIARTLGNCLSMSNLA------------------RLVALL  159 (262)
T ss_pred             hCCCCEEEEECCeeeehHHHHHHhCCE--EEecCCCEeechhHHhccCCCCccHHH------------------HHHHHh
Confidence            468899999999999999999999998  999999988664331 221   12111                  122222


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  .....+++-....++++||+++||||+|+++
T Consensus       160 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  191 (262)
T PRK06144        160 G--AARVKDMLFTARLLEAEEALAAGLVNEVVED  191 (262)
T ss_pred             C--HHHHHHHHHcCCCcCHHHHHHcCCcCeecCH
Confidence            2  2333445556678999999999999999864

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=98.15  E-value=4.8e-06  Score=62.08  Aligned_cols=89  Identities=18%  Similarity=0.034  Sum_probs=63.7

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|.+++|.  |++.++++|.+-...-|..   |...-+.                  +..
T Consensus        94 ~~~~kPvIAav~G~a~GgG~~la~acD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~~  153 (251)
T PRK06023         94 AEAEKPIVSGVDGLAIGIGTTIHLHCDL--TFASPRSLFRTPFVDLALVPEAGSSLLAP------------------RLM  153 (251)
T ss_pred             HhCCCCEEEEeCCceecHHHHHHHhCCE--EEEeCCCEecCcccccCCCCCchHHHHHH------------------HHH
Confidence            4568999999999999999999999998  9999999998765554431   2111111                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ......+++-....++++||+++||||+|++.
T Consensus       154 --g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  185 (251)
T PRK06023        154 --GHQRAFALLALGEGFSAEAAQEAGLIWKIVDE  185 (251)
T ss_pred             --hHHHHHHHHHhCCCCCHHHHHHcCCcceeeCH
Confidence              12222333334567999999999999999864

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=98.15  E-value=5.3e-06  Score=62.00  Aligned_cols=89  Identities=17%  Similarity=0.111  Sum_probs=63.3

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-+++++|.  |++.++++|.+=...-|.   .|...-                  +.+..
T Consensus        91 ~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~~~v  150 (257)
T PRK05862         91 ARIRKPVIAAVAGYALGGGCELAMMCDI--IIAADTAKFGQPEIKLGVLPGMGGSQR------------------LTRAV  150 (257)
T ss_pred             HhCCCCEEEEEccEEeHHHHHHHHHCCE--EEEeCCCEEeCchhccCcCCCccHHHH------------------HHHHh
Confidence            4568899999999999999999999998  999999988765444332   121111                  11122


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       151 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  182 (257)
T PRK05862        151 G--KAKAMDLCLTGRMMDAAEAERAGLVSRVVPA  182 (257)
T ss_pred             C--HHHHHHHHHhCCccCHHHHHHcCCCCEeeCH
Confidence            2  1222334445568999999999999999864

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=98.15  E-value=9.4e-06  Score=60.72  Aligned_cols=88  Identities=15%  Similarity=0.077  Sum_probs=62.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|+++||.  |++.++++|.+-.+.-|..   +-..-+                  .+..|
T Consensus        92 ~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~~~~~~~~~l------------------~~~vG  151 (256)
T TIGR03210        92 DVPKPVIARVQGYAIGGGNVLVTICDL--TIASEKAQFGQVGPKVGSVDPGYGTALL------------------ARVVG  151 (256)
T ss_pred             hCCCCEEEEECCEEehhhHHHHHhCCE--EEEeCCCEEecccccccccCCccHHHHH------------------HHHhC
Confidence            468899999999999999999999998  9999999988755544321   111111                  11112


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....|+++||+++||||+|+..
T Consensus       152 --~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~  182 (256)
T TIGR03210       152 --EKKAREIWYLCRRYTAQEALAMGLVNAVVPH  182 (256)
T ss_pred             --HHHHHHHHHhCCCcCHHHHHHcCCceeeeCH
Confidence              1122233333467999999999999999864

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=98.15  E-value=7.3e-06  Score=61.44  Aligned_cols=89  Identities=15%  Similarity=0.096  Sum_probs=64.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|++++|-  |++.++++|..-...-|.   .|...-+                  .+.. 
T Consensus        98 ~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~r~v-  156 (263)
T PRK07799         98 RLTKPLIAAVEGPAIAGGTEILQGTDI--RVAGESAKFGISEAKWSLFPMGGSAVRL------------------VRQI-  156 (263)
T ss_pred             cCCCCEEEEECCeEeccHHHHHHhCCE--EEecCCCEecCcccccCcCCCccHHHHH------------------HHHh-
Confidence            468899999999999999999999998  999999998775555442   1221111                  1111 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                       ......+++-....++++||+++||||+|++..
T Consensus       157 -G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  189 (263)
T PRK07799        157 -PYTVACDLLLTGRHITAAEAKEIGLIGHVVPDG  189 (263)
T ss_pred             -CHHHHHHHHHcCCCCCHHHHHHcCCccEecCcc
Confidence             223334455556679999999999999998753

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=98.15  E-value=6.1e-06  Score=61.71  Aligned_cols=87  Identities=15%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|++++|-  |++.++++|.+.....|..   |-..-+                  .+.. 
T Consensus       100 ~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~~-  158 (262)
T PRK07509        100 RLPVPVIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWGLVPDMAGTVSL------------------RGLV-  158 (262)
T ss_pred             hCCCCEEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccCCCCCchHHHHH------------------HHHh-
Confidence            468899999999999999999999998  9999999988876654432   211111                  1111 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                       ......+++-....++++||+++||||+|++
T Consensus       159 -g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~  189 (262)
T PRK07509        159 -RKDVARELTYTARVFSAEEALELGLVTHVSD  189 (262)
T ss_pred             -CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence             2233344454567799999999999999975

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=98.14  E-value=7.3e-06  Score=62.00  Aligned_cols=89  Identities=10%  Similarity=0.113  Sum_probs=63.8

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-|++++|.  |++.++++|.+=....|..   |-..-+                  .+..
T Consensus       101 ~~~~kPvIAav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~i  160 (275)
T PRK09120        101 RWYQKPTIAMVNGWCFGGGFSPLVACDL--AIAADEAQFGLSEINWGIPPGGGVSKAM------------------ADTV  160 (275)
T ss_pred             HhCCCCEEEEEcCEEechhHHHHHhCCE--EEEeCCcEecCCccccCCCCCcchHHHH------------------HHHc
Confidence            3468899999999999999999999998  9999999988744433321   221111                  1112


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       161 G--~~~a~~llltg~~~~A~eA~~~Glv~~vv~~  192 (275)
T PRK09120        161 G--HRDALYYIMTGETFTGRKAAEMGLVNESVPL  192 (275)
T ss_pred             C--HHHHHHHHhcCCccCHHHHHHcCCcceecCH
Confidence            2  2233444445567999999999999999864

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=98.14  E-value=7.7e-06  Score=61.00  Aligned_cols=89  Identities=15%  Similarity=0.133  Sum_probs=63.9

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-+++++|-  |++.++++|-+-...-|.   .|....+                  .+..
T Consensus        91 ~~~~kpvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v  150 (257)
T PRK07658         91 EKFSKPVIAAIHGAALGGGLELAMSCHI--RFATESAKLGLPELNLGLIPGFAGTQRL------------------PRYV  150 (257)
T ss_pred             HhCCCCEEEEEcCeeeeHHHHHHHhCCE--EEecCCCcccCcccccCCCCCCcHHHHH------------------HHHh
Confidence            3568899999999999999999999998  999999988765544332   1221111                  1111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       151 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  182 (257)
T PRK07658        151 G--KAKALEMMLTSEPITGAEALKWGLVNGVFPE  182 (257)
T ss_pred             C--HHHHHHHHHcCCCcCHHHHHHcCCcCeecCh
Confidence            2  2223344546677999999999999999864

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=98.14  E-value=7.2e-06  Score=61.12  Aligned_cols=91  Identities=14%  Similarity=-0.041  Sum_probs=65.0

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      ..++.||.+.+.|.|.+.|..+++++|-  |++.++++|......-|.. +-..                ...+.++.  
T Consensus        91 ~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~----------------~~~l~~~~--  150 (249)
T PRK07110         91 LNCPIPVIAAMQGHAIGGGLVLGLYADI--VVLSRESVYTANFMKYGFTPGMGA----------------TAILPEKL--  150 (249)
T ss_pred             HcCCCCEEEEecCceechHHHHHHhCCE--EEEeCCCEecCchhccCCCCCchH----------------HHHHHHHh--
Confidence            3568899999999999999999999998  9999999886644443321 1100                00111122  


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ......+++-...-++++||+++||||+|++.
T Consensus       151 g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~  182 (249)
T PRK07110        151 GLALGQEMLLTARYYRGAELKKRGVPFPVLPR  182 (249)
T ss_pred             CHHHHHHHHHcCCccCHHHHHHcCCCeEEeCh
Confidence            23344556666778999999999999999864

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=98.13  E-value=1.1e-05  Score=60.26  Aligned_cols=87  Identities=14%  Similarity=0.096  Sum_probs=63.2

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      ++.||.+.+.|.|.+.|.-++++||.  |++.++++|..-....|.   .|-..-+                  .+..| 
T Consensus        92 ~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~iG-  150 (254)
T PRK08259         92 LSKPVIAAVSGYAVAGGLELALWCDL--RVAEEDAVFGVFCRRWGVPLIDGGTVRL------------------PRLIG-  150 (254)
T ss_pred             CCCCEEEEECCEEEhHHHHHHHhCCE--EEecCCCEecCcccccCCCCCccHHHHH------------------HHHhC-
Confidence            57899999999999999999999998  999999988664443332   1211111                  11222 


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                       ...-.+++-....|+++||+++||||+|++.
T Consensus       151 -~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~  181 (254)
T PRK08259        151 -HSRAMDLILTGRPVDADEALAIGLANRVVPK  181 (254)
T ss_pred             -HHHHHHHHHcCCccCHHHHHHcCCCCEeeCh
Confidence             3334555556678999999999999999875

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=98.13  E-value=4.9e-06  Score=62.83  Aligned_cols=89  Identities=11%  Similarity=0.098  Sum_probs=64.1

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|..|++++|-  |++.++++|.+-...-|..   |...-+                  .+..
T Consensus       108 ~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v  167 (275)
T PLN02664        108 EQCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLAITADLGTLQRL------------------PSIV  167 (275)
T ss_pred             HhCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhCCCCCccHHHHH------------------HHHh
Confidence            3568899999999999999999999998  9999999988755544422   221111                  1111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|+++
T Consensus       168 G--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  199 (275)
T PLN02664        168 G--YGNAMELALTGRRFSGSEAKELGLVSRVFGS  199 (275)
T ss_pred             C--HHHHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence            1  2223444445568999999999999999863

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=98.13  E-value=7.1e-06  Score=61.77  Aligned_cols=89  Identities=12%  Similarity=0.147  Sum_probs=63.6

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|++++|-  |++.++++|..-...-|.   .|...-+.                  +..
T Consensus       106 ~~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~~  165 (272)
T PRK06142        106 ADCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLGMVADVGSLQRLP------------------RII  165 (272)
T ss_pred             HhCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhCCCCCchHHHHHH------------------HHh
Confidence            3468899999999999999999999998  999999988766655442   22211111                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  .....+++-...-++++||+++||||+|+++
T Consensus       166 G--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~  197 (272)
T PRK06142        166 G--DGHLRELALTGRDIDAAEAEKIGLVNRVYDD  197 (272)
T ss_pred             C--HHHHHHHHHhCCCcCHHHHHHcCCccEecCC
Confidence            1  1223344444556999999999999999864

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=98.12  E-value=1e-05  Score=60.59  Aligned_cols=88  Identities=14%  Similarity=0.060  Sum_probs=63.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-+++++|-  |++.++++|.+=...-|.   .|...-+                  .+..|
T Consensus        96 ~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~vG  155 (261)
T PRK08138         96 QCPKPVIAAVNGYALGGGCELAMHADI--IVAGESASFGQPEIKVGLMPGAGGTQRL------------------VRAVG  155 (261)
T ss_pred             hCCCCEEEEEccEEEcHHHHHHHhCCE--EEecCCCEeeCcccccccCCCCcHHHHH------------------HHHhC
Confidence            468899999999999999999999998  999999988775554442   1221111                  12222


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       156 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  186 (261)
T PRK08138        156 --KFKAMRMALTGCMVPAPEALAIGLVSEVVED  186 (261)
T ss_pred             --HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence              2223344445567999999999999999864

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=98.12  E-value=8.5e-06  Score=62.19  Aligned_cols=89  Identities=13%  Similarity=0.042  Sum_probs=64.7

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+-....|..   |-..-+.                  +..
T Consensus       110 ~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------r~v  169 (296)
T PRK08260        110 FDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRGIVPEAASSWFLP------------------RLV  169 (296)
T ss_pred             HhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcCcCCCcchhhhHH------------------Hhh
Confidence            3468899999999999999999999998  9999999998876654421   2111111                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       170 G--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~  201 (296)
T PRK08260        170 G--LQTALEWVYSGRVFDAQEALDGGLVRSVHPP  201 (296)
T ss_pred             C--HHHHHHHHHcCCccCHHHHHHCCCceeecCH
Confidence            1  2233445545567999999999999999864

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=98.12  E-value=5.5e-06  Score=61.82  Aligned_cols=89  Identities=12%  Similarity=0.137  Sum_probs=63.8

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-+++++|-  |++.++++|..=...-|.   .|...-+                  .+.-
T Consensus        95 ~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v  154 (255)
T PRK07260         95 KQLPKPVIMCVDGAVAGAAANMAVAADF--CIASTKTKFIQAFVGVGLAPDAGGLFLL------------------TRAI  154 (255)
T ss_pred             HcCCCCEEEEecCeeehhhHHHHHhCCE--EEEeCCCEEechHhhcCCCCCCchhhhh------------------HHhh
Confidence            3568899999999999999999999998  999999988753322222   1221111                  1111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  .....+++-....+|++||+++||||+|++.
T Consensus       155 g--~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~  186 (255)
T PRK07260        155 G--LNRATHLAMTGEALTAEKALEYGFVYRVAES  186 (255)
T ss_pred             C--HHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence            2  2334455556678999999999999999864

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=98.11  E-value=1.1e-05  Score=60.67  Aligned_cols=90  Identities=10%  Similarity=0.053  Sum_probs=61.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+-|.|.+.|.-+++++|-  |++.++++|.+=...-|...   ..-  ..           .+.+..|  .
T Consensus        99 ~~~kPvIaaV~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gi~p---~~~--~~-----------~l~~~vG--~  158 (265)
T PRK05674         99 RLKIPTLAVVQGAAFGGALGLISCCDM--AIGADDAQFCLSEVRIGLAP---AVI--SP-----------FVVKAIG--E  158 (265)
T ss_pred             cCCCCEEEEEcCEEEechhhHhhhcCE--EEEeCCCEEeCcccccCCCc---chh--HH-----------HHHHHhC--H
Confidence            468899999999999999999999998  99999998887443333221   110  00           0111112  1


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..-.+++-...-|+++||+++||||+|++.
T Consensus       159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  188 (265)
T PRK05674        159 RAARRYALTAERFDGRRARELGLLAESYPA  188 (265)
T ss_pred             HHHHHHHHhCcccCHHHHHHCCCcceecCH
Confidence            222333334456899999999999999864

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=98.10  E-value=1.3e-05  Score=59.57  Aligned_cols=89  Identities=16%  Similarity=0.030  Sum_probs=61.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-QGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      .++.||.+.+.|.|.+.|.-+++++|-  |++.++++|.+=...-|. -+..                ....+.+..|  
T Consensus        84 ~~~kP~Iaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~p~~g----------------~~~~l~~~~G--  143 (243)
T PRK07854         84 AAPVPVIAAINGPAIGAGLQLAMACDL--RVVAPEAYFQFPVAKYGIALDNW----------------TIRRLSSLVG--  143 (243)
T ss_pred             hCCCCEEEEecCcccccHHHHHHhCCE--EEEcCCCEEeccccccccCCCcc----------------HHHHHHHHhC--
Confidence            468899999999999999999999998  999999988753333332 1110                0111122222  


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                      .....+++-....++++||+++||||+|.+
T Consensus       144 ~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~  173 (243)
T PRK07854        144 GGRARAMLLGAEKLTAEQALATGMANRIGT  173 (243)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHCCCcccccC
Confidence            223334444567899999999999999853

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=98.10  E-value=1.7e-05  Score=59.23  Aligned_cols=88  Identities=13%  Similarity=0.087  Sum_probs=63.9

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-+++++|-  |++.++++|..-...-|..   |-..-                  +.++.|
T Consensus        89 ~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~~~vg  148 (254)
T PRK08252         89 PPRKPLIAAVEGYALAGGFELALACDL--IVAARDAKFGLPEVKRGLVAAGGGLLR------------------LPRRIP  148 (254)
T ss_pred             cCCCCEEEEECCEEehHHHHHHHhCCE--EEEeCCCEEeCchhhcCCCCCchHHHH------------------HHHHcC
Confidence            367899999999999999999999998  9999999887644443321   21111                  122222


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-...-++++||+++||||+|+.+
T Consensus       149 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  179 (254)
T PRK08252        149 --YHIAMELALTGDMLTAERAHELGLVNRLTEP  179 (254)
T ss_pred             --HHHHHHHHHcCCccCHHHHHHcCCcceecCc
Confidence              2334455555667999999999999999875

>PLN02921 naphthoate synthase

Probab=98.10  E-value=1.4e-05  Score=62.19  Aligned_cols=88  Identities=18%  Similarity=0.138  Sum_probs=65.2

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|..|++++|-  |++.+++.|.+..+..|..   |-..-+                  .+..|
T Consensus       159 ~~~kPvIAaVnG~a~GGG~~LalacD~--riA~~~A~f~~pe~~~Gl~p~~gg~~~L------------------~rliG  218 (327)
T PLN02921        159 RLPKPVIAMVAGYAVGGGHILHMVCDL--TIAADNAVFGQTGPKVGSFDAGYGSSIM------------------ARLVG  218 (327)
T ss_pred             hCCCCEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCCccHHHHH------------------HHHhC
Confidence            468899999999999999999999998  9999999998877765532   111111                  11111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....|+++||+++||||+|+..
T Consensus       219 --~~~A~ellltG~~~~A~eA~~~GLV~~vv~~  249 (327)
T PLN02921        219 --QKKAREMWFLARFYTASEALKMGLVNTVVPL  249 (327)
T ss_pred             --HHHHHHHHHcCCcCCHHHHHHCCCceEEeCH
Confidence              2233445555668999999999999999864

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=98.09  E-value=9e-06  Score=61.97  Aligned_cols=89  Identities=9%  Similarity=-0.018  Sum_probs=63.2

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+.|.|.+.|.-|++++|.  |++.++++|.+=...-|..|.. .+.     +   .        ...  ..
T Consensus       116 ~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~~~~-~~~-----l---~--------~~i--G~  174 (288)
T PRK08290        116 DLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIPGVE-YFA-----H---P--------WEL--GP  174 (288)
T ss_pred             hCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcCcch-HHH-----H---H--------HHh--hH
Confidence            468899999999999999999999998  9999999987544444443311 000     0   0        011  12


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ....+++-....++++||+++||||+|++.
T Consensus       175 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~  204 (288)
T PRK08290        175 RKAKELLFTGDRLTADEAHRLGMVNRVVPR  204 (288)
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEeeCH
Confidence            233444445568999999999999999864

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=98.08  E-value=9.8e-06  Score=60.65  Aligned_cols=89  Identities=16%  Similarity=0.126  Sum_probs=63.8

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|.+++|-  |++.++++|.+-...-|.   .|...-+...                  .
T Consensus        94 ~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~------------------v  153 (260)
T PRK07657         94 EQLPQPVIAAINGIALGGGLELALACDF--RIAAESASLGLTETTLAIIPGAGGTQRLPRL------------------I  153 (260)
T ss_pred             HhCCCCEEEEEcCEeechHHHHHHhCCE--EEeeCCCEEcCchhccCcCCCccHHHHHHHH------------------h
Confidence            3568899999999999999999999998  999999988876665443   2222222111                  1


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|+++
T Consensus       154 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  185 (260)
T PRK07657        154 G--VGRAKELIYTGRRISAQEAKEIGLVEFVVPA  185 (260)
T ss_pred             C--HHHHHHHHHhCCCCCHHHHHHcCCCCeecCH
Confidence            1  1122333334456999999999999999864

>PRK08788 enoyl-CoA hydratase; Validated

Probab=98.08  E-value=1.9e-05  Score=60.39  Aligned_cols=89  Identities=15%  Similarity=0.073  Sum_probs=62.9

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .+.||.+.+.|.|.+.|.-|++++|.  |++.++++|.+-...-|.. +--                ....+.+..|  .
T Consensus       120 ~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lGl~p~~g----------------~~~~l~~~vG--~  179 (287)
T PRK08788        120 AGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFNLFPGMG----------------AYSFLARRVG--P  179 (287)
T ss_pred             CCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhCcCCCch----------------HHHHHHHHhh--H
Confidence            57899999999999999999999998  9999999877544433321 110                0111222222  2


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ....+++-....|+++||+++||||+|++.
T Consensus       180 ~~A~ellltG~~l~A~eA~~~GLV~~vv~~  209 (287)
T PRK08788        180 KLAEELILSGKLYTAEELHDMGLVDVLVED  209 (287)
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence            333445556667999999999999999865

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=98.07  E-value=1.1e-05  Score=60.31  Aligned_cols=88  Identities=17%  Similarity=0.134  Sum_probs=62.2

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|..|++++|-  |++.+++.|.+-...-|.   .|-..-+.                  +..|
T Consensus        91 ~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~lG~~p~~g~~~~l~------------------~~vG  150 (256)
T TIGR02280        91 ALPLPVVCAVNGVAAGAGANLALACDI--VLAAESARFIQAFAKIGLIPDSGGTWSLP------------------RLVG  150 (256)
T ss_pred             hCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEEeChhhhcCCCCCccHHHHHH------------------HHhC
Confidence            468899999999999999999999998  999999998764444332   12211111                  1111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-...-++++||+++||||+|++.
T Consensus       151 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  181 (256)
T TIGR02280       151 --RARAMGLAMLGEKLDARTAASWGLIWQVVDD  181 (256)
T ss_pred             --HHHHHHHHHcCCCCCHHHHHHcCCcceeeCh
Confidence              1122334445567999999999999999864

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=98.06  E-value=1e-05  Score=61.15  Aligned_cols=88  Identities=15%  Similarity=0.067  Sum_probs=62.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ----GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~----G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+-|.|.+.|.-|++++|-  |++.++++|.+-....|..    |...-                  +.+..
T Consensus       107 ~~~kPvIaav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~~g~~~~------------------l~~~v  166 (276)
T PRK05864        107 RLHQPVIAAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGINNGLTASELGLSYL------------------LPRAI  166 (276)
T ss_pred             hCCCCEEEEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccccCCCCCCcchhee------------------hHhhh
Confidence            468899999999999999999999998  9999999887654443321    21111                  11222


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  .....+++-....++++||+++||||+|++.
T Consensus       167 G--~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~  198 (276)
T PRK05864        167 G--SSRAFEIMLTGRDVDAEEAERIGLVSRQVPD  198 (276)
T ss_pred             C--HHHHHHHHHcCCccCHHHHHHcCCcceeeCH
Confidence            2  2233344334446899999999999999864

>PLN02600 enoyl-CoA hydratase

Probab=98.05  E-value=1.1e-05  Score=60.24  Aligned_cols=88  Identities=11%  Similarity=0.007  Sum_probs=62.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|.+++|-  |++.++++|..-....|..   |...-+                  .+.. 
T Consensus        86 ~~~kPvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~~-  144 (251)
T PLN02600         86 ALSIPTIAVVEGAALGGGLELALSCDL--RICGEEAVFGLPETGLAIIPGAGGTQRL------------------PRLV-  144 (251)
T ss_pred             hCCCCEEEEecCeecchhHHHHHhCCE--EEeeCCCEEeCcccccCcCCCchHHHHH------------------HHHh-
Confidence            468899999999999999999999998  9999999988744433321   221111                  1111 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                       ....-.+++-....++++||+++||||+|++.
T Consensus       145 -G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  176 (251)
T PLN02600        145 -GRSRAKELIFTGRRIGAREAASMGLVNYCVPA  176 (251)
T ss_pred             -CHHHHHHHHHhCCccCHHHHHHcCCCcEeeCh
Confidence             12222344444567999999999999999864

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=98.05  E-value=1.3e-05  Score=59.99  Aligned_cols=89  Identities=16%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|..-...-|..   |....+                  .+..
T Consensus        94 ~~~~kPvIaav~G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v  153 (260)
T PRK05809         94 ENLDKPVIAAINGFALGGGCELSMACDI--RIASEKAKFGQPEVGLGITPGFGGTQRL------------------ARIV  153 (260)
T ss_pred             HcCCCCEEEEEcCeeecHHHHHHHhCCE--EEeeCCCEEeCcccccCCCCCccHHHHH------------------HHHh
Confidence            3568899999999999999999999998  9999999988755544432   111111                  1111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       154 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  185 (260)
T PRK05809        154 G--PGKAKELIYTGDMINAEEALRIGLVNKVVEP  185 (260)
T ss_pred             C--HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh
Confidence            1  1223334444567899999999999999864

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=98.05  E-value=1.5e-05  Score=61.03  Aligned_cols=87  Identities=13%  Similarity=-0.021  Sum_probs=65.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLG-GAQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~-~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      .++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-.... +...-  ..                 +..+  ..
T Consensus       110 ~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~l~G~~~~--~~-----------------~~~~--vG  166 (298)
T PRK12478        110 RASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSRMWGAYLT--GM-----------------WLYR--LS  166 (298)
T ss_pred             hCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccccccCCch--hH-----------------HHHH--hh
Confidence            468899999999999999999999998  9999999988866552 33210  00                 0011  23


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .....+++-....++++||+++||||+|+..
T Consensus       167 ~~~A~~llltg~~i~A~eA~~~GLV~~vv~~  197 (298)
T PRK12478        167 LAKVKWHSLTGRPLTGVQAAEAELINEAVPF  197 (298)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence            4445566667788999999999999999864

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=98.05  E-value=1.3e-05  Score=60.28  Aligned_cols=88  Identities=14%  Similarity=0.021  Sum_probs=61.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|++++|-  |++.++++|.+=....|..   |-..-+..                  ..|
T Consensus       104 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~------------------~vG  163 (268)
T PRK07327        104 NCDKPIVSAIHGPAVGAGLVAALLADI--SIAAKDARIIDGHTRLGVAAGDHAAIVWPL------------------LCG  163 (268)
T ss_pred             cCCCCEEEEEcCeeeehhhHHHHhCCE--EEecCCCEEeCcccccCCCCCcchhhHHHH------------------HhC
Confidence            467899999999999999999999998  9999999887643333322   22111111                  011


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....|+++||+++||||+|++.
T Consensus       164 --~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  194 (268)
T PRK07327        164 --MAKAKYYLLLCEPVSGEEAERIGLVSLAVDD  194 (268)
T ss_pred             --HHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence              1122234445567999999999999999864

>KOG1680|consensus

Probab=98.04  E-value=9e-06  Score=61.84  Aligned_cols=89  Identities=15%  Similarity=0.066  Sum_probs=69.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||...+-|+|...|.-|.+.||-  |+|.|+|.|..-++..|.   .|-.+.|..                  -- 
T Consensus       125 ~~~KPvIaainG~AlgGG~ELalmCDi--rva~~~Akfg~~~~~~Gi~p~~GGT~rl~r------------------~v-  183 (290)
T KOG1680|consen  125 RLKKPVIAAINGFALGGGLELALMCDI--RVAGEGAKFGFFEIRMGIIPSWGGTQRLPR------------------IV-  183 (290)
T ss_pred             hcccceeEeeeceeeccchhhhhhcce--EeccCCCeecccccccCCccCCCchhhHHH------------------Hh-
Confidence            368899999999999999999999999  999999999999988552   333333222                  11 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                       ....-.+++-....++++||++.|||++|+...
T Consensus       184 -G~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~  216 (290)
T KOG1680|consen  184 -GKSRALEMILTGRRLGAQEAKKIGLVNKVVPSG  216 (290)
T ss_pred             -ChHHHHHHHHhcCcccHHHHHhCCceeEeecch
Confidence             223334556678889999999999999998753

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=98.03  E-value=1.3e-05  Score=59.79  Aligned_cols=89  Identities=18%  Similarity=0.153  Sum_probs=65.9

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-Q--GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~--G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-|++++|.  |++.++++|.+....-|. -  |...-+..       .           .
T Consensus        95 ~~~~kPvIAav~G~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r-------~-----------~  154 (257)
T COG1024          95 ADLPKPVIAAVNGYALGGGLELALACDI--RIAAEDAKFGLPEVNLGLLPGDGGTQRLPR-------L-----------L  154 (257)
T ss_pred             HhCCCCEEEEEcceEeechhhhhhcCCe--EEecCCcEecCcccccccCCCCcHHHHHHH-------h-----------c
Confidence            4678999999999999999999999999  999999999998887553 2  33222211       1           1


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-...-++++||+++||||+|+..
T Consensus       155 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  186 (257)
T COG1024         155 G--RGRAKELLLTGEPISAAEALELGLVDEVVPD  186 (257)
T ss_pred             C--HHHHHHHHHcCCcCCHHHHHHcCCcCeeeCC
Confidence            1  1111114445677999999999999998864

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=98.01  E-value=2.1e-05  Score=58.57  Aligned_cols=85  Identities=15%  Similarity=0.068  Sum_probs=59.1

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-+++++|-  |++.++++|.+..+.-|..   |-..-+                  .+..
T Consensus        86 ~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~~~~~~Gl~p~~g~~~~l------------------~~~~  145 (248)
T PRK06072         86 RFSDKIYISAINGVTAGACIGIALSTDF--KFASRDVKFVTAFQRLGLASDTGVAYFL------------------LKLT  145 (248)
T ss_pred             HhCCCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEecchhhcCcCCCchHHHHH------------------HHHh
Confidence            3568899999999999999999999998  9999999998765554432   111111                  1111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceee
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKI  109 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~I  109 (114)
                      |  . ...+++-....++++||+++||||++
T Consensus       146 g--~-~a~~lll~g~~~~a~eA~~~Glv~~~  173 (248)
T PRK06072        146 G--Q-RFYEILVLGGEFTAEEAERWGLLKIS  173 (248)
T ss_pred             h--H-HHHHHHHhCCccCHHHHHHCCCcccc
Confidence            2  1 12223323455899999999999964

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=98.01  E-value=1.8e-05  Score=59.17  Aligned_cols=88  Identities=17%  Similarity=0.103  Sum_probs=62.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|++++|-  |++.++++|.+-...-|.   .|-..-+                  .+.-|
T Consensus        97 ~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~p~~g~~~~l------------------~~~vG  156 (262)
T PRK08140         97 ALPLPVIAAVNGVAAGAGANLALACDI--VLAARSASFIQAFVKIGLVPDSGGTWFL------------------PRLVG  156 (262)
T ss_pred             hCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEEeccccccCCCCCccHHHHH------------------HHHhC
Confidence            468899999999999999999999998  999999998764443332   1211111                  11111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        .....+++-...-++++||+++||||+|++.
T Consensus       157 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  187 (262)
T PRK08140        157 --MARALGLALLGEKLSAEQAEQWGLIWRVVDD  187 (262)
T ss_pred             --HHHHHHHHHcCCCcCHHHHHHcCCccEeeCh
Confidence              1222344445567999999999999999864

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=97.99  E-value=9.9e-06  Score=60.66  Aligned_cols=86  Identities=16%  Similarity=0.105  Sum_probs=64.0

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|++++|.  |++.++++|-+....-|..   |...-+                  .++  
T Consensus        96 ~~~~pvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L------------------~~~--  153 (260)
T PRK07659         96 TMPKLTISAIHGPAAGLGLSIALTADY--VIADISAKLAMNFIGIGLIPDGGGHFFL------------------QKR--  153 (260)
T ss_pred             hCCCCEEEEecCceecHHHHHHHhCCE--EEEcCCCEEcCchhhcCCCCCCchhhhH------------------HHh--
Confidence            468899999999999999999999998  9999999987766554432   221111                  111  


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeec
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKIL  110 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii  110 (114)
                      .......+++-....++++||+++||||+|+
T Consensus       154 vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  184 (260)
T PRK07659        154 VGENKAKQIIWEGKKLSATEALDLGLIDEVI  184 (260)
T ss_pred             cCHHHHHHHHHhCCccCHHHHHHcCChHHHh
Confidence            1233344555566789999999999999997

>PRK08321 naphthoate synthase; Validated

Probab=97.99  E-value=3.6e-05  Score=59.04  Aligned_cols=89  Identities=18%  Similarity=0.144  Sum_probs=62.7

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEec-CCceeeeecCCccCC-C--CHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSL-PNSRIMIHQPLGGAQ-G--QASDIEIQAREILYLRQRLNEILSEK   77 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~-p~s~~miH~p~~~~~-G--~~~~l~~~~~~l~~~~~~~~~~ya~~   77 (114)
                      ..++.||.+.+.|.|.+.|.-|++++|-  |++. ++++|.+=.+..|.. +  -..-                  +.+.
T Consensus       132 ~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~p~~~~~~~------------------L~r~  191 (302)
T PRK08321        132 RFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDADVGSFDGGYGSAY------------------LARQ  191 (302)
T ss_pred             HcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccccccCCCchHHHH------------------HHHH
Confidence            3468899999999999999999999998  9999 689887644443321 1  1111                  1122


Q ss_pred             hCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .|  ...-.+++-....++++||+++||||+|++.
T Consensus       192 vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~  224 (302)
T PRK08321        192 VG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH  224 (302)
T ss_pred             hC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCH
Confidence            22  2223344445568999999999999999864

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=97.97  E-value=7.9e-06  Score=60.83  Aligned_cols=87  Identities=13%  Similarity=-0.026  Sum_probs=62.4

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-+++++|-  |++.++++|.+....-|.   .|-..-+                  .+..
T Consensus        92 ~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~l------------------~~~~  151 (249)
T PRK05870         92 ASCPLPTIAAVNGAAVGAGLNLALAADV--RIAGPKALFDARFQKLGLHPGGGATWML------------------QRAV  151 (249)
T ss_pred             HhCCCCEEEEECCEeEchhHHHHHhCCE--EEEcCCCEEeCcccccCcCCCCcceeeH------------------Hhhh
Confidence            3568899999999999999999999998  999999999866554442   1221111                  1111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeec
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL  110 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii  110 (114)
                        ......+++-....++++||+++||||+|+
T Consensus       152 --G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  181 (249)
T PRK05870        152 --GPQVARAALLFGMRFDAEAAVRHGLALMVA  181 (249)
T ss_pred             --CHHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence              122333444455679999999999999987

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=97.97  E-value=3.9e-05  Score=56.96  Aligned_cols=91  Identities=16%  Similarity=0.114  Sum_probs=61.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecC-CceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLP-NSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p-~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      .++.||.+.+.|.|.+.|..|++++|.  |++.+ .++|.+-....|....  ..             ....+..+.|.+
T Consensus        92 ~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~~p--~~-------------~~~~l~~~vG~~  154 (239)
T PLN02267         92 SLPMPTIAAVTGHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIGLPLP--DY-------------FMALLRAKIGSP  154 (239)
T ss_pred             cCCCCEEEEECCcchHHHHHHHHHCCE--EEecCCCCeEeccccccCCCCC--hH-------------HHHHHHHHcChH
Confidence            468899999999999999999999998  99985 4567655544443211  10             011122233321


Q ss_pred             HHHH-HhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          82 VKKI-SQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        82 ~~~i-~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        .. .+++-....|+++||+++||||+|+++
T Consensus       155 --~a~~~llltG~~~~a~eA~~~Glv~~vv~~  184 (239)
T PLN02267        155 --AARRDVLLRAAKLTAEEAVEMGIVDSAHDS  184 (239)
T ss_pred             --HHHHHHHHcCCcCCHHHHHHCCCcceecCC
Confidence              22 244556677999999999999999863

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=97.94  E-value=1.6e-05  Score=59.50  Aligned_cols=86  Identities=12%  Similarity=-0.019  Sum_probs=58.9

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|+++||.  |++.++++|..=...-|.   .|-..-+..    +-.              
T Consensus        99 ~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~----l~~--------------  158 (260)
T PRK07827         99 ELPKPVIAAIDGHVRAGGFGLVGACDI--VVAGPESTFALTEARIGVAPAIISLTLLPR----LSP--------------  158 (260)
T ss_pred             hCCCCEEEEEcCeeecchhhHHHhCCE--EEEcCCCEEeCcccccCCCCCcccchhHHh----hhH--------------
Confidence            468899999999999999999999998  999999988764443332   121111110    100              


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                         ....+++-....++++||+++||||+|.+
T Consensus       159 ---~~a~~l~l~g~~~~a~eA~~~Glv~~v~~  187 (260)
T PRK07827        159 ---RAAARYYLTGEKFGAAEAARIGLVTAAAD  187 (260)
T ss_pred             ---HHHHHHHHhCCccCHHHHHHcCCcccchH
Confidence               01122222345689999999999999864

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.91  E-value=0.00012  Score=60.88  Aligned_cols=105  Identities=12%  Similarity=0.027  Sum_probs=79.0

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCc---------------------c--------C-C-C-
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLG---------------------G--------A-Q-G-   51 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~---------------------~--------~-~-G-   51 (114)
                      ...||.++..+. +|.+=+|++++++  .++.|.+.+.++-...                     |        + . . 
T Consensus       125 sgKpVvA~~~~~-~s~~YylAs~AD~--I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~m  201 (584)
T TIGR00705       125 SGKPVYAYGTNY-SQGQYYLASFADE--IILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDM  201 (584)
T ss_pred             cCCeEEEEEccc-cchhhhhhhhCCE--EEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCC
Confidence            357999988765 6888888888988  9999999987754221                     1        0 0 1 


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCce-------ecHHHHHHcCcceeecc
Q psy5228          52 QASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNF-------MSAKMAMEYCLIDKILK  111 (114)
Q Consensus        52 ~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~-------lta~eA~~~GliD~Ii~  111 (114)
                      +..+-+..-..|+.+.+.+.+..++.-+++.+++....+.-.|       .++++|++.||||+|..
T Consensus       202 S~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~  268 (584)
T TIGR00705       202 SPEARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCS  268 (584)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCC
Confidence            1223333445667888899999999999999999988776555       38999999999999974

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=97.88  E-value=4.4e-05  Score=58.40  Aligned_cols=88  Identities=8%  Similarity=0.039  Sum_probs=62.9

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+.|.|.+.|+-|+++||-  |++.+++.|.+=...  ..|-+...                .+..+.  ..
T Consensus       125 ~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~pe~~--~gg~~~~~----------------~~~~~v--G~  182 (302)
T PRK08272        125 HAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYPPTR--VWGVPATG----------------MWAYRL--GP  182 (302)
T ss_pred             hCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCcchh--cccCChHH----------------HHHHHh--hH
Confidence            467899999999999999999999998  999999977543332  11211110                011122  23


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..-.+++-....++++||+++||||+|++.
T Consensus       183 ~~A~~llltG~~i~a~eA~~~GLv~~vv~~  212 (302)
T PRK08272        183 QRAKRLLFTGDCITGAQAAEWGLAVEAVPP  212 (302)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCCceecCH
Confidence            444556666778999999999999999864

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=97.83  E-value=5.8e-05  Score=59.48  Aligned_cols=89  Identities=12%  Similarity=0.026  Sum_probs=63.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|.++||.  |++.++++|-.-.+.-|.   .|-..-+...                  .|
T Consensus       122 ~~pKPVIAAVnG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlGl~P~~Ggt~rLprl------------------vG  181 (360)
T TIGR03200       122 GCDKPVICRVNGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHGSAPIGGATDFLPLM------------------IG  181 (360)
T ss_pred             hCCCCEEEEECCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccCCCCCccHHHHHHHh------------------hC
Confidence            468899999999999999999999998  999999998886665442   2222222111                  11


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ...-..++-....++++||+++||||+|++..
T Consensus       182 --~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~  213 (360)
T TIGR03200       182 --CEQAMVSGTLCEPWSAHKAKRLGIIMDVVPAL  213 (360)
T ss_pred             --HHHHHHHHHhCCcCcHHHHHHcCChheecCch
Confidence              11122222234589999999999999998753

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=97.82  E-value=3.4e-05  Score=61.79  Aligned_cols=77  Identities=17%  Similarity=0.259  Sum_probs=58.0

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      ++.|+.++++|-+.|.|++.+.+|+.  .+|.|+|.+.+=.|.+.   .+.+...                         
T Consensus       258 l~VPiISVViGeGgSGGAlalg~aD~--VlMle~A~ysVisPEgaAsILwkd~~~-------------------------  310 (431)
T PLN03230        258 LRVPIIATVIGEGGSGGALAIGCGNR--MLMMENAVYYVASPEACAAILWKSAAA-------------------------  310 (431)
T ss_pred             CCCCEEEEEeCCCCcHHHHHhhcCCE--EEEecCCEEEecCHHHHHHHHhccccc-------------------------
Confidence            46899999999999999999999987  99999999888888642   1222111                         


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                       .++-.    +..-+||+++++.|+||+||..
T Consensus       311 -A~eAA----ealkitA~dL~~~GiID~II~E  337 (431)
T PLN03230        311 -APKAA----EALRITAAELVKLGVVDEIVPE  337 (431)
T ss_pred             -hHHHH----HHcCCCHHHHHhCCCCeEeccC
Confidence             00111    1226899999999999999974

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=97.80  E-value=4.1e-05  Score=63.31  Aligned_cols=90  Identities=14%  Similarity=0.117  Sum_probs=60.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCC--ceeeeecCC-ccC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPN--SRIMIHQPL-GGA---QGQASDIEIQAREILYLRQRLNEILSE   76 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~--s~~miH~p~-~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~   76 (114)
                      .++.||.+.+-|.|.+.|..|.+++|.  |++.++  ++|.+-... .+.   .|....                  +..
T Consensus       121 ~~pkPvIAAVnG~a~GGG~~LALacD~--rIas~~~~a~fg~pEv~~~Gl~P~~gg~~r------------------l~~  180 (550)
T PRK08184        121 HSGLKFIAAVNGTCAGGGYELALACDE--IVLVDDRSSAVSLPEVPLLGVLPGTGGLTR------------------VTD  180 (550)
T ss_pred             hCCCCEEEEECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccccCCCcchHHH------------------hhh
Confidence            468899999999999999999999998  999987  555443321 221   111111                  111


Q ss_pred             HhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          77 KTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        77 ~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..........+++-....++++||+++||||+|+++
T Consensus       181 ~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~  216 (550)
T PRK08184        181 KRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKP  216 (550)
T ss_pred             hhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCH
Confidence            112223333344445568999999999999999864

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=97.75  E-value=6.2e-05  Score=56.85  Aligned_cols=77  Identities=21%  Similarity=0.273  Sum_probs=58.7

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      .+.|+.++++|-|.|.|++.+..++.  ++|.|++.+.+=.|.+.   .+.+.                          .
T Consensus       135 ~~VP~IsVI~G~~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~a~il~~~~--------------------------~  186 (256)
T PRK12319        135 LKVPIIAIIIGEGGSGGALALAVADQ--VWMLENTMYAVLSPEGFASILWKDG--------------------------S  186 (256)
T ss_pred             CCCCEEEEEeCCcCcHHHHHhhcCCE--EEEecCceEEEcCHHHHHHHHhcCc--------------------------c
Confidence            36899999999999999999998887  99999999999888642   11110                          1


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..++..+.+    -+||.++.+.|+||+||+.
T Consensus       187 ~a~~aa~~~----~~~a~~l~~~g~iD~ii~e  214 (256)
T PRK12319        187 RATEAAELM----KITAGELLEMGVVDKVIPE  214 (256)
T ss_pred             cHHHHHHHc----CCCHHHHHHCCCCcEecCC
Confidence            222223333    3499999999999999975

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=97.74  E-value=0.00012  Score=57.89  Aligned_cols=87  Identities=15%  Similarity=0.026  Sum_probs=61.7

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|++++|.  |++.++++|.+=...-|..   |...-+       -++-.. ...      
T Consensus       103 ~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iGl~p~~g~~~~L-------~rl~g~-~a~------  166 (379)
T PLN02874        103 TYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVGFHTDCGFSYIL-------SRLPGH-LGE------  166 (379)
T ss_pred             hCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccCcCCChhHHHHH-------HhhhHH-HHH------
Confidence            468999999999999999999999998  9999999887766554432   221111       111000 111      


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                             .++-....++++||+++||||+|++.
T Consensus       167 -------~l~ltG~~i~a~eA~~~GLv~~vv~~  192 (379)
T PLN02874        167 -------YLALTGARLNGKEMVACGLATHFVPS  192 (379)
T ss_pred             -------HHHHcCCcccHHHHHHcCCccEEeCH
Confidence                   22223457999999999999999864

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.69  E-value=0.00018  Score=55.96  Aligned_cols=78  Identities=22%  Similarity=0.255  Sum_probs=58.6

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      ..+.|+.++++|-+.|.|++.+..++.  ++|.|+|.+.+=.|.+.   .+.+.                          
T Consensus       187 ~~~VP~IsVIiGeg~sGGAla~~~aD~--v~m~~~A~~svisPEg~a~Il~~~~--------------------------  238 (319)
T PRK05724        187 RLKVPIICTVIGEGGSGGALAIGVGDR--VLMLEYSTYSVISPEGCASILWKDA--------------------------  238 (319)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHhccCe--eeeecCceEeecCHHHHHHHHhcCc--------------------------
Confidence            346899999999999999999988887  99999999988888642   11110                          


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ...++..+    ...+||+++++.|+||+|+..
T Consensus       239 ~~a~~aae----~~~ita~~l~~~g~iD~II~E  267 (319)
T PRK05724        239 SKAPEAAE----AMKITAQDLKELGIIDEIIPE  267 (319)
T ss_pred             hhHHHHHH----HcCCCHHHHHHCCCceEeccC
Confidence            11222222    334899999999999999974

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=97.65  E-value=0.00021  Score=55.55  Aligned_cols=77  Identities=27%  Similarity=0.247  Sum_probs=57.6

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      .+.|+.++++|-+.|.|++.+..++.  ++|.|++.+.+=.|.+.   .+.+...                         
T Consensus       188 ~~VP~IsVViGeggsGGAla~~~aD~--v~m~~~a~~sVisPEg~a~Il~kd~~~-------------------------  240 (316)
T TIGR00513       188 LGVPVICTVIGEGGSGGALAIGVGDK--VNMLEYSTYSVISPEGCAAILWKDASK-------------------------  240 (316)
T ss_pred             CCCCEEEEEecccccHHHhhhccCCE--EEEecCceEEecCHHHHHHHhccchhh-------------------------
Confidence            46899999999999999998888887  99999999999888643   1222100                         


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                       .++..+.    .-+||+++.+.|+||+||..
T Consensus       241 -a~~aae~----~~~ta~~l~~~G~iD~II~e  267 (316)
T TIGR00513       241 -APKAAEA----MKITAPDLKELGLIDSIIPE  267 (316)
T ss_pred             -HHHHHHH----ccCCHHHHHHCCCCeEeccC
Confidence             1111221    33589999999999999974

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=97.65  E-value=5.1e-05  Score=59.22  Aligned_cols=88  Identities=16%  Similarity=0.066  Sum_probs=62.0

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|.++||-  |++.++++|.+=...-|.   .|...-+..    +              .
T Consensus        97 ~~~~kPvIAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~P~~g~~~~L~r----~--------------~  156 (342)
T PRK05617         97 ARYPKPYIALMDGIVMGGGVGISAHGSH--RIVTERTKMAMPETGIGFFPDVGGTYFLSR----A--------------P  156 (342)
T ss_pred             HhCCCCEEEEEcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccccCcCCCccceeEehh----c--------------c
Confidence            3468899999999999999999999998  999999998876655442   222111111    0              0


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |   ..-.+++-....++++||+++||||+|++.
T Consensus       157 g---~~a~~llltG~~i~A~eA~~~GLv~~vv~~  187 (342)
T PRK05617        157 G---ALGTYLALTGARISAADALYAGLADHFVPS  187 (342)
T ss_pred             c---HHHHHHHHcCCCCCHHHHHHcCCcceecCH
Confidence            0   011222224456999999999999999864

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.62  E-value=0.00031  Score=54.70  Aligned_cols=78  Identities=15%  Similarity=0.106  Sum_probs=58.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      ..+.|+.++++|-+.|.|++.+..++.  ++|.|+|.+.+=.|.+.   .+.+.+.-.               --|+   
T Consensus       190 ~~~VP~IsVViGeggsGGAlal~~aD~--V~m~e~a~~sVisPEg~a~Il~~d~~~a~---------------~aA~---  249 (322)
T CHL00198        190 SFEVPIICTIIGEGGSGGALGIGIGDS--IMMLEYAVYTVATPEACAAILWKDSKKSL---------------DAAE---  249 (322)
T ss_pred             cCCCCEEEEEeCcccHHHHHhhhcCCe--EEEeCCeEEEecCHHHHHHHHhcchhhHH---------------HHHH---
Confidence            346899999999999999998888887  99999999999999642   122211111               1122   


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                                  -.-+||++-+++|+||+||..
T Consensus       250 ------------~~~ita~dL~~~giiD~ii~E  270 (322)
T CHL00198        250 ------------ALKITSEDLKVLGIIDEIIPE  270 (322)
T ss_pred             ------------HcCCCHHHHHhCCCCeEeccC
Confidence                        233789999999999999974

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.60  E-value=0.00016  Score=61.35  Aligned_cols=89  Identities=15%  Similarity=0.133  Sum_probs=64.7

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+=...-|..   |-...+.                  +..
T Consensus        99 ~~~~kPvIAav~G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lGl~p~~g~~~~L~------------------rlv  158 (715)
T PRK11730         99 EDLPVPTVAAINGYALGGGCECVLATDY--RVASPDARIGLPETKLGIMPGFGGTVRLP------------------RLI  158 (715)
T ss_pred             HcCCCCEEEEECCEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcCCCCCchHHHHHH------------------Hhc
Confidence            3568899999999999999999999998  9999999888755554421   2221111                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       159 G--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~  190 (715)
T PRK11730        159 G--ADNALEWIAAGKDVRAEDALKVGAVDAVVAP  190 (715)
T ss_pred             C--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCH
Confidence            2  2233444545667999999999999999864

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=97.58  E-value=0.00028  Score=56.38  Aligned_cols=87  Identities=13%  Similarity=0.069  Sum_probs=62.2

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|.++|+.  |++.++++|-.=...-|..   |-..-+.       ++-.. ...|.--  
T Consensus       131 ~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iGl~Pd~G~s~~L~-------rl~G~-~a~~L~L--  198 (401)
T PLN02157        131 TYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIGFHPDAGASFNLS-------HLPGR-LGEYLGL--  198 (401)
T ss_pred             hCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcCCCCCccHHHHHH-------HhhhH-HHHHHHH--
Confidence            468899999999999999999999998  9999999887665554432   3222221       11111 1222223  


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                                 ....|+++||+++||+|+++..
T Consensus       199 -----------TG~~i~A~eA~~~GLv~~vVp~  220 (401)
T PLN02157        199 -----------TGLKLSGAEMLACGLATHYIRS  220 (401)
T ss_pred             -----------cCCcCCHHHHHHcCCceEEeCH
Confidence                       3468999999999999999865

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=97.54  E-value=0.00034  Score=55.57  Aligned_cols=87  Identities=14%  Similarity=0.064  Sum_probs=61.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|.++|+.  |++.++++|-.=...-|..   |...-+       -++-.. ...|.--||
T Consensus       103 ~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iGl~Pd~G~s~~L-------~rl~G~-~~~~l~LTG  172 (381)
T PLN02988        103 TYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALGLFPDVGASYFL-------SRLPGF-FGEYVGLTG  172 (381)
T ss_pred             HCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcCcCCCccHHHHH-------HHHHHH-HHHHHHHcC
Confidence            468899999999999999999999998  9999999876544443422   222222       111111 122333333


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                                   ..++++||++.||+|+++..
T Consensus       173 -------------~~i~a~eA~~~GLv~~vv~~  192 (381)
T PLN02988        173 -------------ARLDGAEMLACGLATHFVPS  192 (381)
T ss_pred             -------------CCCCHHHHHHcCCceEecCH
Confidence                         57999999999999999864

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=97.52  E-value=0.00026  Score=58.60  Aligned_cols=91  Identities=12%  Similarity=0.067  Sum_probs=64.5

Q ss_pred             cccCCCeEEEE-ehhhhhHH-HHHHhcCCCCcEEe-------cCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHH
Q psy5228           2 QFIKPNVSTLC-IGLAASMG-AFLLASGTKGKRFS-------LPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQR   69 (114)
Q Consensus         2 ~~~~~~V~t~~-~G~aaS~a-s~i~~ag~~~~R~~-------~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~   69 (114)
                      ..++.||.+.+ -|.|.+.| .=|+++||.  |++       .++++|.+-...-|..   |-..-+             
T Consensus       362 ~~~~kpviAav~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L-------------  426 (546)
T TIGR03222       362 DVSSRSLFALIEPGSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRL-------------  426 (546)
T ss_pred             HcCCCCEEEEECCCeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCccccccCCCcCcHHHH-------------
Confidence            34688999999 79999999 999999998  999       8999988877765532   332222             


Q ss_pred             HHHHHHHHh-CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          70 LNEILSEKT-GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        70 ~~~~ya~~t-g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                           .++. |.+.-.-.+++-....++++||+++|||++|++.
T Consensus       427 -----~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~  465 (546)
T TIGR03222       427 -----ATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD  465 (546)
T ss_pred             -----HHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCc
Confidence                 1222 2222222222224567999999999999999765

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.45  E-value=0.00032  Score=59.50  Aligned_cols=89  Identities=16%  Similarity=0.141  Sum_probs=63.4

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCc--eeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNS--RIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSE   76 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s--~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~   76 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||.  |++.+++  +|.+....-|.   .|-..-+                  .+
T Consensus        98 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lGl~p~~gg~~~L------------------~r  157 (708)
T PRK11154         98 EALPIPVVAAIHGACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLGLLPGSGGTQRL------------------PR  157 (708)
T ss_pred             HhCCCCEEEEECCeeechHHHHHHhCCE--EEEeCCCCceEeCccccCCCCCCccHHhHH------------------Hh
Confidence            3578899999999999999999999998  9999986  55555544342   1221111                  11


Q ss_pred             HhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          77 KTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        77 ~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..|  ...-.+++-....++++||+++||||+|+..
T Consensus       158 ~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~  191 (708)
T PRK11154        158 LIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPH  191 (708)
T ss_pred             hcC--HHHHHHHHHhCCcCCHHHHHHCCCCcEecCh
Confidence            112  2333455556677999999999999999864

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=97.45  E-value=0.00046  Score=55.31  Aligned_cols=88  Identities=13%  Similarity=0.009  Sum_probs=63.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      ..+.||.+.+.|.|.+.|.-|.++|+.  |++.++++|..=...-|..   |-..-       |-++-... ..|.--| 
T Consensus       136 ~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iGl~PdvG~s~~-------L~rl~g~~-g~~L~LT-  204 (407)
T PLN02851        136 TYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMGFHPDAGASYY-------LSRLPGYL-GEYLALT-  204 (407)
T ss_pred             hCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccCCCCCccHHHH-------HHHhcCHH-HHHHHHh-
Confidence            467899999999999999999999998  9999999888766654432   22111       22221111 2233334 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                                  ...++++||+++||+|+++...
T Consensus       205 ------------G~~i~a~eA~~~GLa~~~v~~~  226 (407)
T PLN02851        205 ------------GQKLNGVEMIACGLATHYCLNA  226 (407)
T ss_pred             ------------CCcCCHHHHHHCCCceeecCHh
Confidence                        4679999999999999998653

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=97.44  E-value=0.00024  Score=58.75  Aligned_cols=90  Identities=16%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCC--ceeeeecCC-ccC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPN--SRIMIHQPL-GGA---QGQASDIEIQAREILYLRQRLNEILSE   76 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~--s~~miH~p~-~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~   76 (114)
                      .++.||.+.+-|.|.+.|.-|.++||-  |++.++  ++|.+=... .|.   .|-...+                  ..
T Consensus       117 ~~pkPvIAAVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l------------------~~  176 (546)
T TIGR03222       117 HSGLKFLAAVNGTCAGGGYELALACDE--IMLVDDRSSSVSLPEVPLLGVLPGTGGLTRV------------------TD  176 (546)
T ss_pred             hCCCCEEEEECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccCcCCccchhhhc------------------cc
Confidence            468899999999999999999999998  999987  455442221 121   1111110                  00


Q ss_pred             HhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          77 KTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        77 ~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ........-.+++-...-++++||+++||||+|++.
T Consensus       177 ~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~  212 (546)
T TIGR03222       177 KRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKP  212 (546)
T ss_pred             cchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeCh
Confidence            001112222233334456899999999999999864

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.44  E-value=0.00038  Score=59.00  Aligned_cols=89  Identities=17%  Similarity=0.149  Sum_probs=61.9

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCc--eeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNS--RIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSE   76 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s--~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~   76 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||.  |++.+++  +|.+-...-|.   .|-..-+.                  +
T Consensus        93 ~~~~kPvIAaVnG~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lGl~p~~g~~~~L~------------------r  152 (699)
T TIGR02440        93 EALPIPVVAAIHGACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLGLLPGSGGTQRLP------------------R  152 (699)
T ss_pred             HhCCCCEEEEECCEeecHHHHHHHhCCE--EEEcCCCCcEEechhhcccCCCCccHHHHHH------------------H
Confidence            3568899999999999999999999998  9999874  55554444342   12211111                  1


Q ss_pred             HhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          77 KTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        77 ~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..|  ...-.+++-....++++||+++||||+|+++
T Consensus       153 ~vG--~~~A~~llltG~~~~a~eA~~~GLV~~vv~~  186 (699)
T TIGR02440       153 LIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPQ  186 (699)
T ss_pred             hcC--HHHHHHHHHcCCcCCHHHHHhCCCCcEecCh
Confidence            111  2222344556677999999999999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.38  E-value=0.00046  Score=58.70  Aligned_cols=89  Identities=12%  Similarity=0.078  Sum_probs=63.7

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-|+++|+.  |++.++++|.+=...-|.   .|-...+.                  +..
T Consensus        99 ~~~pkPvIAai~G~alGGGleLalacD~--ria~~~a~fglPEv~lGl~Pg~Ggt~rL~------------------rli  158 (714)
T TIGR02437        99 EDLPVPTVAAINGIALGGGCECVLATDF--RIADDTAKIGLPETKLGIMPGFGGTVRLP------------------RVI  158 (714)
T ss_pred             HhCCCCEEEEECCeeecHHHHHHHhCCE--EEEeCCCEEecchhhcCCCCCccHHHHHH------------------HHh
Confidence            3568899999999999999999999998  999999998876555442   12222211                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|+..
T Consensus       159 G--~~~A~~llltG~~~~A~eA~~~GLvd~vv~~  190 (714)
T TIGR02437       159 G--ADNALEWIASGKENRAEDALKVGAVDAVVTA  190 (714)
T ss_pred             C--HHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh
Confidence            1  1122344445567999999999999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK10949 protease 4; Provisional

Probab=97.35  E-value=0.0024  Score=53.66  Aligned_cols=104  Identities=13%  Similarity=0.065  Sum_probs=72.6

Q ss_pred             CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc-----------------------------C--CCCH
Q psy5228           5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG-----------------------------A--QGQA   53 (114)
Q Consensus         5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~-----------------------------~--~G~~   53 (114)
                      ..||.++.. .++|.+=+|++++++  .++.|.+.+.++-....                             +  ..-.
T Consensus       145 GKpVvA~~~-~~~s~~YyLASaAD~--I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS  221 (618)
T PRK10949        145 GKPVYAVGD-SYSQGQYYLASFANK--IYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMS  221 (618)
T ss_pred             CCeEEEEec-CccchhhhhhhhCCE--EEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCC
Confidence            468888743 345777777778887  99999999887754321                             0  0111


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHhCCCHHHHHhhh----cC---CceecHHHHHHcCcceeecc
Q psy5228          54 SDIEI-QAREILYLRQRLNEILSEKTGHSVKKISQDT----DR---DNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        54 ~~l~~-~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m----~~---~~~lta~eA~~~GliD~Ii~  111 (114)
                      .+-++ .-..|+.+.+.+.+..++.-+++.+++....    +.   ..-++|++|++.||||+|..
T Consensus       222 ~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~  287 (618)
T PRK10949        222 PAAREADSRWIGELWQNYLNTVAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALAS  287 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCC
Confidence            22233 3345677888899999999999999996433    22   12369999999999999975

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.28  E-value=0.00067  Score=57.92  Aligned_cols=88  Identities=14%  Similarity=0.118  Sum_probs=61.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCc--eeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNS--RIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEK   77 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s--~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~   77 (114)
                      .++.||...+-|.|.+.|.-|+++||.  |++.+++  +|.+....-|.   .|-...+.                  +.
T Consensus       106 ~~~kPvIAav~G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLp------------------rl  165 (737)
T TIGR02441       106 KSQKPIVAAISGSCLGGGLELALACHY--RIATKDRKTLLGLPEVMLGLLPGAGGTQRLP------------------KL  165 (737)
T ss_pred             hCCCCEEEEECCEeecHHHHHHHhCCE--EEEcCCCCCeEecchhhhCCCCCccHhhhHH------------------Hh
Confidence            468899999999999999999999998  9999985  45554443332   12221111                  11


Q ss_pred             hCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .|  ...-.+++-....++++||+++||||+|++.
T Consensus       166 iG--~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~  198 (737)
T TIGR02441       166 TG--VPAALDMMLTGKKIRADRAKKMGIVDQLVDP  198 (737)
T ss_pred             hC--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence            12  1222334446678999999999999999874

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=97.18  E-value=0.00077  Score=55.90  Aligned_cols=91  Identities=15%  Similarity=0.087  Sum_probs=61.5

Q ss_pred             ccCCCeEEEEe-hhhhhHH-HHHHhcCCCCcEEec-------CCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHH
Q psy5228           3 FIKPNVSTLCI-GLAASMG-AFLLASGTKGKRFSL-------PNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRL   70 (114)
Q Consensus         3 ~~~~~V~t~~~-G~aaS~a-s~i~~ag~~~~R~~~-------p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~   70 (114)
                      .++.||.+.+- |.|.+.| .-|+++||.  |++.       |+++|.+-...-|.   .|-..-+....          
T Consensus       367 ~~~kPvIAaV~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~----------  434 (550)
T PRK08184        367 VTSRSLFALIEPGSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRF----------  434 (550)
T ss_pred             hCCCCEEEEECCCceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHh----------
Confidence            45789999996 9999999 999999998  9999       99998887776553   22322221110          


Q ss_pred             HHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          71 NEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        71 ~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                             -|.+.-.-..++-....++++||+++||||+|++.
T Consensus       435 -------vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~  469 (550)
T PRK08184        435 -------YGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD  469 (550)
T ss_pred             -------cChHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh
Confidence                   01110000000113467999999999999999864

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.06  E-value=0.0022  Score=54.65  Aligned_cols=77  Identities=21%  Similarity=0.245  Sum_probs=56.9

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      .+.|+.++++|-|+|.|++.+..++.  ++|.|+|.+.+-.|.+.   .+.+.+.               ..--|+.   
T Consensus       279 l~VP~ISVViGeggSGGAlA~g~aD~--VlMle~A~~sVisPEgaAsILwkd~~~---------------A~eAAe~---  338 (762)
T PLN03229        279 LKVPIVSIVIGEGGSGGALAIGCANK--LLMLENAVFYVASPEACAAILWKSAKA---------------APKAAEK---  338 (762)
T ss_pred             CCCCEEEEEeCCcchHHHHHhhcCCE--EEEecCCeEEecCHHHHHHHHhcCccc---------------HHHHHHH---
Confidence            46899999999999999999999988  99999999888777542   1221111               0111222   


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                                  .-+||++=+++|+||+||..
T Consensus       339 ------------lkiTa~dL~~lGiiD~IIpE  358 (762)
T PLN03229        339 ------------LRITAQELCRLQIADGIIPE  358 (762)
T ss_pred             ------------cCCCHHHHHhCCCCeeeccC
Confidence                        23788999999999999964

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=96.98  E-value=0.0057  Score=45.82  Aligned_cols=82  Identities=13%  Similarity=0.038  Sum_probs=56.4

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhc-CCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLAS-GTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~a-g~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .+.|+.+++.|.+.|.|.+-+.. ++.  .++.|++.+-.=.|.+.                          ++-+.++.
T Consensus       106 ~~vP~IsvI~g~a~ggg~lamg~~ad~--v~Alp~A~i~vm~~e~a--------------------------a~I~~~~~  157 (238)
T TIGR03134       106 AGHPVIGLIYGKAISGAFLAHGLQADR--IIALPGAMVHVMDLESM--------------------------ARVTKRSV  157 (238)
T ss_pred             CCCCEEEEEeCCccHHHHHHHccCcCe--EEEcCCcEEEecCHHHH--------------------------HHHHccCH
Confidence            35899999999999988887753 554  99999998777666432                          11111333


Q ss_pred             HHHHhhhc--CCceecHHHHHHcCcceeecccC
Q psy5228          83 KKISQDTD--RDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        83 ~~i~~~m~--~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      ++..+..+  ..+-.+++.+.+.|+||+|+++.
T Consensus       158 ~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~  190 (238)
T TIGR03134       158 EELEALAKSSPVFAPGIENFVKLGGVHALLDVA  190 (238)
T ss_pred             hHHHHHHHhhhhhccCHHHHHhCCCccEEeCCC
Confidence            33333322  23457888999999999999853

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=96.64  E-value=0.0014  Score=50.49  Aligned_cols=80  Identities=25%  Similarity=0.294  Sum_probs=60.2

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEK   77 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~   77 (114)
                      |-.++.||.+++.|--.|-|++-+..|++  .+|..||.+.+-.|.+-   .+-+++.-               .--++.
T Consensus       184 m~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPEG~AsILWkD~~ka---------------~eAAe~  246 (317)
T COG0825         184 MARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPEGCASILWKDASKA---------------KEAAEA  246 (317)
T ss_pred             HhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChhhhhhhhhcChhhh---------------HHHHHH
Confidence            34578999999999999999999999998  99999999999999742   23332221               112223


Q ss_pred             hCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .+               +|+++=+++|+||.||..
T Consensus       247 mk---------------ita~dLk~lgiID~II~E  266 (317)
T COG0825         247 MK---------------ITAHDLKELGIIDGIIPE  266 (317)
T ss_pred             cC---------------CCHHHHHhCCCcceeccC
Confidence            33               567777899999999875

>KOG1681|consensus

Probab=96.55  E-value=0.00062  Score=51.06  Aligned_cols=93  Identities=12%  Similarity=0.113  Sum_probs=65.2

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      ..+.||.+-+-|.|.++|.=|..||+.  ||+...+.|.+...-.+...+.-       .|+++-+.+-         +.
T Consensus       124 ~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDvglaADvG-------TL~RlpkvVG---------n~  185 (292)
T KOG1681|consen  124 RCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDVGLAADVG-------TLNRLPKVVG---------NQ  185 (292)
T ss_pred             hCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeeeehhhchh-------hHhhhhHHhc---------ch
Confidence            457788888889999999999999999  99999999999998765432221       2333332211         01


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      .-..++--..+-|++.||+++||+-+|...+
T Consensus       186 s~~~elafTar~f~a~EAl~~GLvSrvf~dk  216 (292)
T KOG1681|consen  186 SLARELAFTARKFSADEALDSGLVSRVFPDK  216 (292)
T ss_pred             HHHHHHHhhhhhcchhhhhhcCcchhhcCCH
Confidence            1112222234568999999999999998764

>COG3904 Predicted periplasmic protein [Function unknown]

Probab=96.43  E-value=0.014  Score=43.15  Aligned_cols=92  Identities=13%  Similarity=0.031  Sum_probs=63.8

Q ss_pred             ehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcC
Q psy5228          13 IGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQG-QASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDR   91 (114)
Q Consensus        13 ~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G-~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~   91 (114)
                      ..+|+|+-.++|++|.+  |++.|.+++-+|||.....- .....  ++...+...-.=...|-...|....-+......
T Consensus       140 ~A~CasaCpl~fagGvr--Rvve~~ayiGVHq~~~~g~~~r~~~~--~a~Sanq~~tar~a~ylrEMgigpgLlq~ml~t  215 (245)
T COG3904         140 GAMCASACPLMFAGGVR--RVVEDFAYIGVHQITTTGRRERIVNG--KAKSANQKVTARLAAYLREMGIGPGLLQMMLAT  215 (245)
T ss_pred             hhhhhccchhhhhccee--eeecccceeeeeeccccCCccccCcH--hhhhhhhhhHHHHHHHHHHcCCCHHHHHHHhcC
Confidence            36899999999999998  99999999999999865322 11111  111111111111455888899988877776633


Q ss_pred             ----CceecHHHHHHcCccee
Q psy5228          92 ----DNFMSAKMAMEYCLIDK  108 (114)
Q Consensus        92 ----~~~lta~eA~~~GliD~  108 (114)
                          =.+++.+|-.+|.|+.+
T Consensus       216 pp~dir~l~~kem~~~~L~t~  236 (245)
T COG3904         216 PPSDIRQLGLKEMTAMKLVTS  236 (245)
T ss_pred             ChHhhhhhhHHHHhhhccccc
Confidence                37799999999988764

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.34  E-value=0.031  Score=46.10  Aligned_cols=90  Identities=19%  Similarity=0.251  Sum_probs=53.9

Q ss_pred             CCCeEEEEehhhhhHHHHHHhc----CCCCcEEecCCceeeeecCCccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           5 KPNVSTLCIGLAASMGAFLLAS----GTKGKRFSLPNSRIMIHQPLGGA-QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         5 ~~~V~t~~~G~aaS~as~i~~a----g~~~~R~~~p~s~~miH~p~~~~-~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      ..|..+++.|.+++.|.+.+++    ++.  .++.|++.+.+=.|.+.. .-..+++... +.-...+            
T Consensus       388 ~vP~isvi~g~~~Gga~~am~~~~~~~d~--~~a~p~a~~~v~~pe~a~~i~~~~~l~~~-~~~~~~~------------  452 (512)
T TIGR01117       388 TVPKVTIITRKAYGGAYLAMCSKHLGADQ--VYAWPTAEIAVMGPAGAANIIFRKDIKEA-KDPAATR------------  452 (512)
T ss_pred             CCCEEEEEcCCCchHHHHHhccccCCCCE--EEEcCCCeEeecCHHHHHHHHhhhhcccc-cCHHHHH------------
Confidence            5789999999999987666643    443  888999988888886531 0011111100 0000000            


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        .+++.+.  .+.+.+|..+.+.|+||.||+++
T Consensus       453 --~~~~~~~--~~~~~~~~~~a~~g~vD~VI~P~  482 (512)
T TIGR01117       453 --KQKIAEY--REEFANPYKAAARGYVDDVIEPK  482 (512)
T ss_pred             --HHHHHHH--HHhhcCHHHHHhcCCCCeeEChH
Confidence              0111111  12356899999999999999864

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>KOG1682|consensus

Probab=95.23  E-value=0.01  Score=44.06  Aligned_cols=92  Identities=18%  Similarity=0.136  Sum_probs=65.6

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      ++.+|.||..-+-|.|+.+|+-+.+++|-  .++.++|.|..--.-.|.+-+..-+     .|.+.--+=+..|.--||+
T Consensus       121 Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tPG~~vGlFCSTPGv-----AlaRavpRkva~~ML~Tg~  193 (287)
T KOG1682|consen  121 IRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTPGAGVGLFCSTPGV-----ALARAVPRKVAAYMLMTGL  193 (287)
T ss_pred             HhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCCCCceeeEecCcch-----hHhhhcchhHHHHHHHhCC
Confidence            35678899999999999999999999998  8999999997655444432221111     1223333335556666765


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |             .|+|||+--|++.+|++.
T Consensus       194 P-------------i~~eeAl~sGlvskvVp~  212 (287)
T KOG1682|consen  194 P-------------ITGEEALISGLVSKVVPA  212 (287)
T ss_pred             C-------------CchHHHHHhhhhhhcCCH
Confidence            4             689999999999988764

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=95.16  E-value=0.011  Score=44.20  Aligned_cols=85  Identities=20%  Similarity=0.282  Sum_probs=61.9

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC--CC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ--GQ-ASDIEIQAREILYLRQRLNEILSEK   77 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~--G~-~~~l~~~~~~l~~~~~~~~~~ya~~   77 (114)
                      ++.+|.||.+.+-|+|.+-|-++-+.|+-  -++..|+.|-=--|..+.+  |- +.-|.              ++    
T Consensus       112 IR~~PKpViA~V~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~Gs~yla--------------r~----  171 (282)
T COG0447         112 IRTMPKPVIAMVAGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYGSSYLA--------------RI----  171 (282)
T ss_pred             HHhCCcceEEEEeeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCcccHHHHH--------------HH----
Confidence            46789999999999999999999999998  7899999999888986532  21 11111              11    


Q ss_pred             hCCCHHHHHhhhcCCce-----ecHHHHHHcCcceeeccc
Q psy5228          78 TGHSVKKISQDTDRDNF-----MSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        78 tg~s~~~i~~~m~~~~~-----lta~eA~~~GliD~Ii~~  112 (114)
                      -|       +.-.|+.|     .+++||++.|+|..|+..
T Consensus       172 VG-------qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~  204 (282)
T COG0447         172 VG-------QKKAREIWFLCRQYDAEEALDMGLVNTVVPH  204 (282)
T ss_pred             hh-------hhhhHHhhhhhhhccHHHHHhcCceeeeccH
Confidence            11       01113333     499999999999998763

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=94.27  E-value=0.054  Score=45.29  Aligned_cols=102  Identities=14%  Similarity=0.085  Sum_probs=53.0

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcC--CCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASG--TKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag--~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      .+.|..|+++|.+++.|.+.+++.  .....++.|++.+-+=.|.+..     .+ .+..++.+..+.....-.+....-
T Consensus       438 ~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~vmg~e~aa-----~i-l~~~e~~~~~~~~~~~~~~~~~~~  511 (569)
T PLN02820        438 AKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGVMGGAQAA-----GV-LAQIERENKKRQGIQWSKEEEEAF  511 (569)
T ss_pred             CCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEEecCHHHHH-----HH-HHHHHhhhhhhccccCCccHHHHH
Confidence            457999999999999988888633  2223666666666555553221     11 011111111110000000000000


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      .+++.+..+  ...+|-.|-+.|+||.||+++
T Consensus       512 ~~~~~~~~~--~~~~p~~aa~~~~vD~VIdP~  541 (569)
T PLN02820        512 KAKTVEAYE--REANPYYSTARLWDDGVIDPA  541 (569)
T ss_pred             HHHHHHHHH--HhCCHHHHHHcCCcCcccCHH
Confidence            112222222  256899999999999999875

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=93.61  E-value=0.11  Score=42.56  Aligned_cols=94  Identities=16%  Similarity=0.117  Sum_probs=52.6

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCC--CCcEEecCCceeeeecCCccC-CCCHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGT--KGKRFSLPNSRIMIHQPLGGA-QGQASDIEIQA---REILYLRQRLNEILSEK   77 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~--~~~R~~~p~s~~miH~p~~~~-~G~~~~l~~~~---~~l~~~~~~~~~~ya~~   77 (114)
                      .+.|+.|+++|.+.|.|.+.+++..  ....++-|++.+.+-.|.+.. .--..++....   ++.........+.|   
T Consensus       366 ~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---  442 (493)
T PF01039_consen  366 ATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEY---  442 (493)
T ss_dssp             H-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHH---
T ss_pred             CCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHH---
Confidence            3679999999999998777766551  223788888888888776431 11111111110   01111111111111   


Q ss_pred             hCCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                                   .+...++..|.+.|++|.|+++.
T Consensus       443 -------------~~~~~~~~~~a~~~~~D~ii~p~  465 (493)
T PF01039_consen  443 -------------EDELSSPYRAASRGYVDDIIDPA  465 (493)
T ss_dssp             -------------HHHHSSHHHHHHTTSSSEESSGG
T ss_pred             -------------HHhcCCHHHHHhcCCCCCccCHH
Confidence                         12235789999999999999875

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=92.30  E-value=0.35  Score=37.17  Aligned_cols=73  Identities=14%  Similarity=0.145  Sum_probs=52.0

Q ss_pred             CCCeEEEEehhhhhHHHHHHh-cCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q psy5228           5 KPNVSTLCIGLAASMGAFLLA-SGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVK   83 (114)
Q Consensus         5 ~~~V~t~~~G~aaS~as~i~~-ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~   83 (114)
                      ..|..+++.|-+.+.++..+. .++-  .++-|++.+.+--|..                          +.+-++    
T Consensus       193 ~vP~IsVv~gpt~GG~aas~a~~~D~--iia~p~A~ig~aGprV--------------------------ie~ti~----  240 (285)
T TIGR00515       193 GLPYISVLTDPTTGGVSASFAMLGDL--NIAEPKALIGFAGPRV--------------------------IEQTVR----  240 (285)
T ss_pred             CCCEEEEEeCCcchHHHHHHHhCCCE--EEEECCeEEEcCCHHH--------------------------HHHHhc----
Confidence            468999999999887766664 7777  8999999888766631                          111222    


Q ss_pred             HHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          84 KISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        84 ~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                         +.+. +-+-+|+-+.+.|+||.|++++
T Consensus       241 ---e~lp-e~~q~ae~~~~~G~vD~iv~~~  266 (285)
T TIGR00515       241 ---EKLP-EGFQTSEFLLEHGAIDMIVHRP  266 (285)
T ss_pred             ---Cccc-hhcCCHHHHHhCCCCcEEECcH
Confidence               2222 3366888889999999999864

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=91.20  E-value=0.6  Score=36.02  Aligned_cols=73  Identities=19%  Similarity=0.196  Sum_probs=48.9

Q ss_pred             CCCeEEEEehhhhhHHHHHHh-cCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q psy5228           5 KPNVSTLCIGLAASMGAFLLA-SGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVK   83 (114)
Q Consensus         5 ~~~V~t~~~G~aaS~as~i~~-ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~   83 (114)
                      ..|..++++|-+.+.++..+. .++-  .++-|++.+.+--|..        +                  .+-++   +
T Consensus       194 ~vP~IsVv~gpt~GG~aas~a~~~D~--iia~p~A~ig~aGprv--------i------------------e~~~~---e  242 (292)
T PRK05654        194 GLPYISVLTDPTTGGVSASFAMLGDI--IIAEPKALIGFAGPRV--------I------------------EQTVR---E  242 (292)
T ss_pred             CCCEEEEEeCCCchHHHHHHHHcCCE--EEEecCcEEEecCHHH--------H------------------Hhhhh---h
Confidence            468899999999887766655 4776  8899999888766621        0                  01111   1


Q ss_pred             HHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          84 KISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        84 ~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      ++.     +-+-+++-+.+.|+||.|++++
T Consensus       243 ~lp-----e~~~~ae~~~~~G~vD~Vv~~~  267 (292)
T PRK05654        243 KLP-----EGFQRAEFLLEHGAIDMIVHRR  267 (292)
T ss_pred             hhh-----hhhcCHHHHHhCCCCcEEECHH
Confidence            111     1255778888999999999864

>KOG1679|consensus

Probab=89.32  E-value=0.24  Score=37.22  Aligned_cols=88  Identities=15%  Similarity=0.120  Sum_probs=62.7

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCc----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLG----GAQGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~----~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||..-++|.|-+-|-=++++||.  |.+..++.+-+-.-..    |..|+ +.+-.          .+        
T Consensus       122 ~Lp~P~IAAidG~ALGGGLElALACDi--Rva~s~akmGLvET~laiiPGaGGt-QRLpR----------~v--------  180 (291)
T KOG1679|consen  122 RLPQPVIAAIDGAALGGGLELALACDI--RVAASSAKMGLVETKLAIIPGAGGT-QRLPR----------IV--------  180 (291)
T ss_pred             hCCccceehhcchhcccchhhhhhccc--eehhhhccccccccceeeecCCCcc-chhHH----------HH--------
Confidence            467899999999999999999999999  9999999998876542    23443 22211          11        


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        .+..-++++-...-|++.||.+.|+|.++++..
T Consensus       181 --g~alaKELIftarvl~g~eA~~lGlVnhvv~qn  213 (291)
T KOG1679|consen  181 --GVALAKELIFTARVLNGAEAAKLGLVNHVVEQN  213 (291)
T ss_pred             --hHHHHHhHhhhheeccchhHHhcchHHHHHhcC
Confidence              111122344455678899999999999888753

>KOG0016|consensus

Probab=85.06  E-value=1.1  Score=34.09  Aligned_cols=84  Identities=17%  Similarity=0.173  Sum_probs=54.7

Q ss_pred             CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc----CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG----AQG-QASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~----~~G-~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      +.|+.+.+-|-|.+.++.|+--+|-  .++...  .-+|-|.+.    ..| +.-.+-..                    
T Consensus       107 ~Kplia~vNGPAIGlgasil~lcD~--V~A~Dk--a~F~TPfa~lGq~PEG~Ss~t~p~i--------------------  162 (266)
T KOG0016|consen  107 PKPLVALVNGPAIGLGASILPLCDY--VWASDK--AWFQTPFAKLGQSPEGCSSVTLPKI--------------------  162 (266)
T ss_pred             CCCEEEEecCCccchhhHHhhhhhe--EEeccc--eEEeccchhcCCCCCcceeeeehHh--------------------
Confidence            6789999999999999999999997  787644  445667642    123 11111110                    


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .....-.++|=-..-|+++||.++|||++|...
T Consensus       163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~  195 (266)
T KOG0016|consen  163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPA  195 (266)
T ss_pred             hchhhHHHHHHhCCcccHHHHHhcCchhhhcCh
Confidence            011112223333456899999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
3tt6_A	196	Structure Of Clpp From Bacillus Subtilis In Compres		3e-43
3tt7_A	197	Structure Of Clpp From Bacillus Subtilis In Complex		3e-43
3ktg_A	199	Structure Of Clpp From Bacillus Subtilis In Monocli		4e-43
3kti_A	199	Structure Of Clpp In Complex With Adep1 Length = 19		4e-43
3st9_A	197	Crystal Structure Of Clpp In Heptameric Form From S		3e-41
1tyf_A	193	The Structure Of Clpp At 2.3 Angstrom Resolution Su		3e-41
3qwd_A	203	Crystal Structure Of Clpp From Staphylococcus Aureu		3e-41
1yg8_A	193	The Structure Of A V6a Variant Of Clpp. Length = 19		3e-41
3mt6_R	207	Structure Of Clpp From Escherichia Coli In Complex		3e-41
3v5i_A	203	The Crystal Structure Of The Mutant Clpp S98a (Stap		6e-41
3hln_A	193	Crystal Structure Of Clpp A153c Mutant With Inter-H		1e-40
2zl0_A	196	Crystal Structure Of H.Pylori Clpp Length = 196		2e-40
2zl3_A	196	Crystal Structure Of H.Pylori Clpp S99a Length = 19		4e-40
3p2l_A	201	Crystal Structure Of Atp-Dependent Clp Protease Sub		9e-37
2f6i_A	215	Crystal Structure Of The Clpp Protease Catalytic Do		9e-29
1tg6_A	277	Crystallography And Mutagenesis Point To An Essenti		2e-28
2ce3_A	200	Crystal Structure Of The Atp-Dependent Clp Protease		9e-27
2c8t_A	206	The 3.0 A Resolution Structure Of Caseinolytic Clp		9e-27
2cby_A	208	Crystal Structure Of The Atp-Dependent Clp Protease		1e-26
3q7h_A	195	Structure Of The Clpp Subunit Of The Atp-Dependent		2e-25
1y7o_A	218	The Structure Of Streptococcus Pneumoniae A153p Clp		6e-20
4hnk_A	219	Crystal Structure Of An Enzyme Length = 219		5e-15
4gm2_A	205	The Crystal Structure Of A Peptidase From Plasmodiu		6e-15

>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed State Length = 196

Iteration: 1
 Score =  169 bits (429), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 96/110 (87%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP VST+CIG+AASMGAFLLA+G KGKR++LPNS +MIHQPLGGAQGQA++IEI A
Sbjct: 80  MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAA 139
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
           + IL LR +LN++L+E+TG  ++ I +DTDRDNF SA+ A+EY LIDKIL
Sbjct: 140 KRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189

>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With Dfp Length = 197

Iteration: 1
 Score =  169 bits (428), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 96/110 (87%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP VST+CIG+AASMGAFLLA+G KGKR++LPNS +MIHQPLGGAQGQA++IEI A
Sbjct: 81  MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAA 140
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
           + IL LR +LN++L+E+TG  ++ I +DTDRDNF SA+ A+EY LIDKIL
Sbjct: 141 KRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190

>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic Crystal Form Length = 199

Iteration: 1
 Score =  169 bits (428), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 96/110 (87%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP VST+CIG+AASMGAFLLA+G KGKR++LPNS +MIHQPLGGAQGQA++IEI A
Sbjct: 80  MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAA 139
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
           + IL LR +LN++L+E+TG  ++ I +DTDRDNF SA+ A+EY LIDKIL
Sbjct: 140 KRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189

>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1 Length = 199

Iteration: 1
 Score =  169 bits (428), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 77/112 (68%), Positives = 96/112 (85%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP VST+CIG+AASMGAFLLA+G KGKR++LPNS +MIHQPLGGAQGQA++IEI A
Sbjct: 80  MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAA 139
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
           + IL LR +LN++L+E+TG  ++ I +DTDRDNF SA+ A+EY LIDKIL  
Sbjct: 140 KRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 191

>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From Staphylococcus Aureus Length = 197

Iteration: 1
 Score =  163 bits (412), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 95/110 (86%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           +Q IKP+V T+CIG+AASMG+FLLA+G KGKRF+LPN+ +MIHQPLGGAQGQA++IEI A
Sbjct: 83  IQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAA 142
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
             IL  R++LN ILSE+TG S++KI +DTDRDNF++A+ A EY LID+++
Sbjct: 143 NHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 192

>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis Length = 193

Iteration: 1
 Score =  163 bits (412), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 94/114 (82%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VST+C+G AASMGAFLL +G KGKRF LPNSR+MIHQPLGG QGQA+DIEI A
Sbjct: 80  MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHA 139
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           REIL ++ R+NE+++  TG S+++I +DT+RD F+SA  A+EY L+D IL  R 
Sbjct: 140 REILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193

>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus Length = 203

Iteration: 1
 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 95/110 (86%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           +Q IKP+V T+CIG+AASMG+FLLA+G KGKRF+LPN+ +MIHQPLGGAQGQA++IEI A
Sbjct: 81  IQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAA 140
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
             IL  R++LN ILSE+TG S++KI +DTDRDNF++A+ A EY LID+++
Sbjct: 141 NHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190

>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp. Length = 193

Iteration: 1
 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 94/114 (82%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VST+C+G AASMGAFLL +G KGKRF LPNSR+MIHQPLGG QGQA+DIEI A
Sbjct: 80  MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHA 139
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           REIL ++ R+NE+++  TG S+++I +DT+RD F+SA  A+EY L+D IL  R 
Sbjct: 140 REILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193

>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With Adep1 Length = 207

Iteration: 1
 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 94/114 (82%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VST+C+G AASMGAFLL +G KGKRF LPNSR+MIHQPLGG QGQA+DIEI A
Sbjct: 94  MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHA 153
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           REIL ++ R+NE+++  TG S+++I +DT+RD F+SA  A+EY L+D IL  R 
Sbjct: 154 REILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207

>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a (Staphylococcus Aureus) Length = 203

Iteration: 1
 Score =  162 bits (409), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 95/110 (86%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           +Q IKP+V T+CIG+AA+MG+FLLA+G KGKRF+LPN+ +MIHQPLGGAQGQA++IEI A
Sbjct: 81  IQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAA 140
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
             IL  R++LN ILSE+TG S++KI +DTDRDNF++A+ A EY LID+++
Sbjct: 141 NHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190

>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds Length = 193

Iteration: 1
 Score =  160 bits (406), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 93/114 (81%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VST+C+G AASMGAFLL +G KGKRF LPNSR+MIHQPLGG QGQA+DIEI  
Sbjct: 80  MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHC 139
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           REIL ++ R+NE+++  TG S+++I +DT+RD F+SA  A+EY L+D IL  R 
Sbjct: 140 REILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193

>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp Length = 196

Iteration: 1
 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 96/112 (85%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           M FI+P+VST+CIG AASMGAFLL+ G KGKRFSLP+SRIMIHQPLGGAQGQASDIEI +
Sbjct: 82  MNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIIS 141
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
            EIL L+  +N IL++ +G S+++I++DTDRD +MSAK A EY LIDK+L++
Sbjct: 142 NEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQK 193

>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a Length = 196

Iteration: 1
 Score =  159 bits (402), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 96/112 (85%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           M FI+P+VST+CIG AA+MGAFLL+ G KGKRFSLP+SRIMIHQPLGGAQGQASDIEI +
Sbjct: 82  MNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIIS 141
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
            EIL L+  +N IL++ +G S+++I++DTDRD +MSAK A EY LIDK+L++
Sbjct: 142 NEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQK 193

>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P From Francisella Tularensis Length = 201

Iteration: 1
 Score =  148 bits (373), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 88/113 (77%)
Query: 2   QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAR 61
           QFIKP+VST+CIGLAAS G+ LLA G KGKR+SLP+S+I IHQPLGG +GQASDIEI A+
Sbjct: 85  QFIKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIXIHQPLGGFRGQASDIEIHAK 144
Query: 62  EILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
            IL ++ RLN++L+  TG  ++ I +DTDRDNF  A  A  Y LID +++ R+
Sbjct: 145 NILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFXXADEAKAYGLIDHVIESRE 197

>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain From Plasmodium Falciparum Length = 215

Iteration: 1
 Score =  121 bits (304), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 79/113 (69%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             +IK ++ T+  GL ASM + +LASG KGKR SLPN RIMIHQPLG A G   DIEIQ 
Sbjct: 92  FNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQT 151
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           +EILYL++ L   LS  T  +V+ I +D+DRD +M+A  A +Y +ID++++ +
Sbjct: 152 KEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETK 204

>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role For The N- Terminus Of Human Mitochondrial Clpp Length = 277

Iteration: 1
 Score =  120 bits (301), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 79/110 (71%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQ+I   + T C+G AASMG+ LLA+GT G R SLPNSRIMIHQP GGA+GQA+DI IQA
Sbjct: 136 MQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQA 195
Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
            EI+ L+++L  I ++ T  S++ I    +RD +MS   A E+ ++DK+L
Sbjct: 196 EEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 245

>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 200

Iteration: 1
 Score =  114 bits (286), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 78/106 (73%)
Query: 7   NVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYL 66
           +++T  +G+AASMG FLLA+GTKGKR++LP++RI++HQPLGG  G A+DI IQA +   +
Sbjct: 87  DIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVI 146
Query: 67  RQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
           ++ +  + +E TG  +++I  D+DRD + +A  A+EY  +D I+ +
Sbjct: 147 KKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 192

>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp Protease 1 From Mycobacterium Tuberculosis Length = 206

Iteration: 1
 Score =  114 bits (286), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 78/106 (73%)
Query: 7   NVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYL 66
           +++T  +G+AASMG FLLA+GTKGKR++LP++RI++HQPLGG  G A+DI IQA +   +
Sbjct: 88  DIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVI 147
Query: 67  RQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
           ++ +  + +E TG  +++I  D+DRD + +A  A+EY  +D I+ +
Sbjct: 148 KKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 193

>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 208

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 78/106 (73%)
Query: 7   NVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYL 66
           +++T  +G+AASMG FLLA+GTKGKR++LP++RI++HQPLGG  G A+DI IQA +   +
Sbjct: 87  DIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVI 146
Query: 67  RQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
           ++ +  + +E TG  +++I  D+DRD + +A  A+EY  +D I+ +
Sbjct: 147 KKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 192

>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii Length = 195

Iteration: 1
 Score =  110 bits (274), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 83/112 (74%)
Query: 2   QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAR 61
           QF+KP+V TLCIG AAS GA LLA G KGKR  LP+S + IHQ LGG QGQ +DI+I A+
Sbjct: 83  QFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXIHQVLGGYQGQGTDIQIHAK 142
Query: 62  EILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           +   +  +LN+IL++ TG  ++++ +DT+RD F++ + A+EY LID I K+R
Sbjct: 143 QTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSIFKER 194

>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp Length = 218

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 2   QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQP--LGGAQGQASDIEIQ 59
            FIK +V T+  G AAS G  + +SG KGKRF LPN+   IHQP    G   Q +D+ I 
Sbjct: 100 NFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYXIHQPXGGTGGGTQQTDMAIA 159
Query: 60  AREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKI 109
              +L  R  L +IL+E +G S +K+  D +RDN+ SA+  +EY  ID+I
Sbjct: 160 PEHLLKTRNTLEKILAENSGQSXEKVHADAERDNWXSAQETLEYGFIDEI 209

>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme Length = 219

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQ 59
           + +I  +V T C+G A  +   L +SG KG RFSL NS   ++Q        QA++IEIQ
Sbjct: 106 INYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQ 165
Query: 60  AREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
            +EI+  ++++ EI+S+ T      IS   +RD + +A  A+++ LID IL++ 
Sbjct: 166 NKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 219

>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium Falciparum Length = 205

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQ 59
           + +I  +V T C+G A  +   L +SG KG RFSL NS   ++Q        QA++IEIQ
Sbjct: 92  INYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQ 151
Query: 60  AREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
            +EI+  ++++ EI+S+ T      IS   +RD + +A  A+++ LID IL++ 
Sbjct: 152 NKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	2e-78
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	6e-78
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	1e-77
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	1e-77
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	1e-77
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	3e-75
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	1e-74
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	2e-19

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Length = 215

 Score =  228 bits (584), Expect = 2e-78
 Identities = 57/114 (50%), Positives = 79/114 (69%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             +IK ++ T+  GL ASM + +LASG KGKR SLPN RIMIHQPLG A G   DIEIQ 
Sbjct: 92  FNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQT 151

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           +EILYL++ L   LS  T  +V+ I +D+DRD +M+A  A +Y +ID++++ + 
Sbjct: 152 KEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL 205

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Length = 203

 Score =  227 bits (580), Expect = 6e-78
 Identities = 72/114 (63%), Positives = 95/114 (83%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           +Q IKP+V T+CIG+AASMG+FLLA+G KGKRF+LPN+ +MIHQPLGGAQGQA++IEI A
Sbjct: 81  IQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAA 140

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
             IL  R++LN ILSE+TG S++KI +DTDRDNF++A+ A EY LID+++    
Sbjct: 141 NHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPET 194

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Length = 201

 Score =  226 bits (579), Expect = 1e-77
 Identities = 72/114 (63%), Positives = 92/114 (80%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VST+CIGLAASMG+ LLA G KGKR+SLP+S+IMIHQPLGG +GQASDIEI A
Sbjct: 84  MQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHA 143

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           + IL ++ RLN++L+  TG  ++ I +DTDRDNFM A  A  Y LID +++ R+
Sbjct: 144 KNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESRE 197

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Length = 208

 Score =  226 bits (579), Expect = 1e-77
 Identities = 49/114 (42%), Positives = 79/114 (69%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           M     +++T  +G+AASMG FLLA+GTKGKR++LP++RI++HQPLGG  G A+DI IQA
Sbjct: 81  MVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQA 140

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
            +   +++ +  + +E TG  +++I  D+DRD + +A  A+EY  +D I+ +  
Sbjct: 141 EQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 194

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Length = 193

 Score =  226 bits (578), Expect = 1e-77
 Identities = 74/113 (65%), Positives = 94/113 (83%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VST+C+G AASMGAFLL +G KGKRF LPNSR+MIHQPLGG QGQA+DIEI A
Sbjct: 80  MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHA 139

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REIL ++ R+NE+++  TG S+++I +DT+RD F+SA  A+EY L+D IL  R
Sbjct: 140 REILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR 192

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Length = 218

 Score =  220 bits (564), Expect = 3e-75
 Identities = 54/116 (46%), Positives = 77/116 (66%), Gaps = 2/116 (1%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQG--QASDIEI 58
           M FIK +V T+ +G+AASMG  + +SG KGKRF LPN+  MIHQP+GG  G  Q +D+ I
Sbjct: 99  MNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAI 158

Query: 59  QAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
               +L  R  L +IL+E +G S++K+  D +RDN+MSA+  +EY  ID+I+    
Sbjct: 159 APEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS 214

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Length = 277

 Score =  221 bits (565), Expect = 1e-74
 Identities = 58/114 (50%), Positives = 79/114 (69%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQ+I   + T C+G AASMG+ LLA+GT G R SLPNSRIMIHQP GGA+GQA+DI IQA
Sbjct: 136 MQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQA 195

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
            EI+ L+++L  I ++ T  S++ I    +RD +MS   A E+ ++DK+L    
Sbjct: 196 EEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPP 249

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 78.5 bits (193), Expect = 2e-19
 Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 1   MQFIKPNVSTLCI---GLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIE 57
           +Q  K  V          AAS G ++            P + I   +P+ G     S IE
Sbjct: 63  IQQSKIPVIIYVYPPGASAASAGTYIALGSHL--IAMAPGTSIGACRPILGYSQNGSIIE 120

Query: 58  IQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
                  Y    +   L++++G +     +   +D  ++ + A++Y +I+ + +   
Sbjct: 121 APPAITNYFIAYIKS-LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDIN 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	100.0
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	100.0
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	100.0
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	100.0
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	100.0
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	100.0
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.97
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.97
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.86
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.57
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.43
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.29
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	98.35
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	98.33
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	98.32
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	98.32
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	98.3
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	98.29
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	98.29
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	98.27
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	98.27
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	98.27
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	98.26
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	98.26
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	98.25
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	98.25
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	98.25
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	98.25
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	98.24
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	98.24
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	98.24
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	98.23
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	98.23
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	98.23
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	98.22
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	98.22
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	98.21
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	98.21
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	98.21
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	98.2
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	98.2
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	98.2
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	98.19
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	98.19
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	98.19
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	98.19
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	98.19
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	98.19
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	98.17
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	98.17
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	98.16
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	98.16
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	98.16
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	98.15
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	98.15
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	98.13
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	98.13
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	98.13
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	98.13
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	98.13
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	98.12
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	98.12
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	98.11
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	98.1
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	98.09
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	98.08
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	98.07
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	98.07
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	98.07
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	98.05
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	98.05
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	98.04
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	98.02
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	98.01
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	98.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	98.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	97.97
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	97.96
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	97.96
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	97.95
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	97.94
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	97.94
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	97.91
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	97.89
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	97.85
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	97.75
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	97.72
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	97.72
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	97.71
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	97.54
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.48
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.09
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.89
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.82
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	96.61
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	96.34
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	96.06
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	95.14
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	95.12
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	95.07
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	94.18
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	90.53
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	81.66

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=100.00  E-value=7.7e-43  Score=253.16  Aligned_cols=113  Identities=36%  Similarity=0.590  Sum_probs=109.9

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      |+++++||+|+|+|+|+|||++|+++|++|+|++.|||++|||||+++. .|+++|+++++++|+++++.+.++|+++||
T Consensus        92 m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG  171 (205)
T 4gm2_A           92 INYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTE  171 (205)
T ss_dssp             HHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6789999999999999999999999999999999999999999999998 999999999999999999999999999999


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      ++.|+|.++|++|+||||+||++|||||+|++++
T Consensus       172 ~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          172 KDTNVISNVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             CCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             CCHHHHHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence            9999999999999999999999999999999864

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=100.00  E-value=1.3e-37  Score=225.20  Aligned_cols=114  Identities=63%  Similarity=1.033  Sum_probs=110.4

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |++++.||+|+|.|+|+|+|++|+++|++|+|++.|||++|||||+++..|+++|+++++++++++++.+.++|+++||+
T Consensus        84 i~~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~  163 (201)
T 3p2l_A           84 MQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQ  163 (201)
T ss_dssp             HHHSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCCeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccCC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK  114 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~~  114 (114)
                      +.+++.++|++++||||+||++|||||+|+++++
T Consensus       164 ~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~  197 (201)
T 3p2l_A          164 DLETIVKDTDRDNFMMADEAKAYGLIDHVIESRE  197 (201)
T ss_dssp             CHHHHHHHTSSCEEEEHHHHHHHTSCSEECCCSC
T ss_pred             CHHHHHHHhhcCeeecHHHHHHcCCccEecCCHH
Confidence            9999999999999999999999999999998764

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=100.00  E-value=1.4e-37  Score=225.40  Aligned_cols=114  Identities=63%  Similarity=1.036  Sum_probs=110.1

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |++++.||+|+|.|+|+|+|++|+++|++|+|++.|||++|||||+++..|+++|+++++++++++++.+.++|+++||+
T Consensus        81 i~~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~  160 (203)
T 3qwd_A           81 IQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQ  160 (203)
T ss_dssp             HHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCC
T ss_pred             HHHhcCCcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccCC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK  114 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~~  114 (114)
                      +.+++.++|++|+||||+||++|||||+|+++++
T Consensus       161 ~~e~i~~~~~~d~~lta~EA~e~GliD~I~~~~~  194 (203)
T 3qwd_A          161 SIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPET  194 (203)
T ss_dssp             CHHHHHHHHTSCCCEEHHHHHHHTSCSEECCCCC
T ss_pred             CHHHHHHHhhcCceecHHHHHHcCCcCEecCCcc
Confidence            9999999999999999999999999999998753

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=100.00  E-value=4.2e-34  Score=215.20  Aligned_cols=113  Identities=51%  Similarity=0.807  Sum_probs=109.7

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |++++.||+|+|.|+|+|+|++|+++|++|+|++.|||++|+|||+++..|++.|++..+++++++++.+.++|+++||+
T Consensus       136 I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~  215 (277)
T 1tg6_A          136 MQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQ  215 (277)
T ss_dssp             HHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      +.+++.+++++++|||++||++|||||+|++.+
T Consensus       216 ~~e~i~~~~drd~~lta~EAle~GLID~I~~~~  248 (277)
T 1tg6_A          216 SLQVIESAMERDRYMSPMEAQEFGILDKVLVHP  248 (277)
T ss_dssp             CHHHHHHHHSSCEEECHHHHHHHTSCSEECSSC
T ss_pred             CHHHHHHHHhcCcccCHHHHHHCCCCCEecCcc
Confidence            999999999999999999999999999999865

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=100.00  E-value=2.1e-33  Score=201.43  Aligned_cols=114  Identities=65%  Similarity=1.057  Sum_probs=109.0

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |++++.||+|+|.|+|+|+|++|+++|++|+|++.|+|++|+|+|+++..|++.|++...+++++.++.+.++|++++|+
T Consensus        80 i~~~~~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~  159 (193)
T 1yg6_A           80 MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ  159 (193)
T ss_dssp             HHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhcCCCEEEEEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            45678999999999999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccCC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK  114 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~~  114 (114)
                      +.+++.+++++++|||++||+++||||+|+++++
T Consensus       160 ~~~~i~~~~~~~~~~ta~eA~~~GliD~i~~~~~  193 (193)
T 1yg6_A          160 SLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN  193 (193)
T ss_dssp             CHHHHHHHTSSCEEEEHHHHHHHTSSSEECCCC-
T ss_pred             CHHHHHHHhcCCeEEcHHHHHHcCCCCEecCCCC
Confidence            9999999999999999999999999999998763

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=100.00  E-value=2e-33  Score=204.97  Aligned_cols=113  Identities=50%  Similarity=0.821  Sum_probs=101.3

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |++++.||+|+|.|+|+|+|++|+++|++|+|+|.|+|++|+|+|+++..|++.|+...++++.++++.+.++|+++||+
T Consensus        92 i~~~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~  171 (215)
T 2f6i_A           92 FNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQ  171 (215)
T ss_dssp             HHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhcCCCEEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            46788999999999999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      +.+++.+++++++|||++||++|||||+|++.+
T Consensus       172 ~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~~  204 (215)
T 2f6i_A          172 TVETIEKDSDRDYYMNALEAKQYGIIDEVIETK  204 (215)
T ss_dssp             CHHHHHHHHHTTCEECHHHHHHHTSCSEECCCS
T ss_pred             CHHHHHHHHhCCeecCHHHHHHCCCCCEecCCc
Confidence            999999999999999999999999999999865

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.97  E-value=1e-31  Score=194.74  Aligned_cols=113  Identities=43%  Similarity=0.802  Sum_probs=99.1

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |+.++.||+|+|.|+|+|+|++|+++|++++|++.|+|++|+|+|+++..|++.|++...++++++++.+.++|++++|+
T Consensus        81 i~~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~  160 (208)
T 2cby_A           81 MVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQ  160 (208)
T ss_dssp             HHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhcCCCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            35678999999999999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      +.+++.+++++++|||++||+++||||+|++..
T Consensus       161 ~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~  193 (208)
T 2cby_A          161 PIERIEADSDRDRWFTAAEALEYGFVDHIITRA  193 (208)
T ss_dssp             CHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC
T ss_pred             CHHHHHHHHhCCcEEcHHHHHHcCCCcEecCch
Confidence            999999999999999999999999999999764

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.97  E-value=2.1e-31  Score=194.44  Aligned_cols=113  Identities=47%  Similarity=0.830  Sum_probs=97.8

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA--QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~--~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      |++++.||+|+|.|.|+|+|++|+++|++|+|++.|+|++|+|+|+++.  .|+++|++..++++++.++.+.++|++++
T Consensus        99 i~~~~~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~  178 (218)
T 1y7o_A           99 MNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENS  178 (218)
T ss_dssp             HHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCEEEEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEecccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678899999999999999999999999999999999999999999877  89999999999999999999999999999


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      |++.+++.+++++++||||+||++|||||+|++.+
T Consensus       179 G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~~  213 (218)
T 1y7o_A          179 GQSMEKVHADAERDNWMSAQETLEYGFIDEIMANN  213 (218)
T ss_dssp             TCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCCC
T ss_pred             CCCHHHHHHHHhCCCEEcHHHHHHCCCCcEEcCcC
Confidence            99999999999999999999999999999999865

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.86  E-value=1.8e-22  Score=148.45  Aligned_cols=107  Identities=17%  Similarity=0.207  Sum_probs=89.8

Q ss_pred             CcccCCCeEEEE---ehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCc--cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           1 MQFIKPNVSTLC---IGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLG--GAQGQASDIEIQAREILYLRQRLNEILS   75 (114)
Q Consensus         1 m~~~~~~V~t~~---~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~--~~~G~~~~l~~~~~~l~~~~~~~~~~ya   75 (114)
                      |+.++.||.++|   .|.|+|+|++|+++|+.  |+|.|++++++|+|..  +..|+++++  ..+.+..++ .+.+.|+
T Consensus        63 i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~--~~a~p~a~ig~~~p~~~~~~~G~~~~~--~~k~~~~~~-~~~~~la  137 (230)
T 3viv_A           63 IQQSKIPVIIYVYPPGASAASAGTYIALGSHL--IAMAPGTSIGACRPILGYSQNGSIIEA--PPAITNYFI-AYIKSLA  137 (230)
T ss_dssp             HHTCSSCEEEEECSTTCEEETHHHHHHHTSSE--EEECTTCEEECCCEEEEECTTSCEEEC--CHHHHHHHH-HHHHHHH
T ss_pred             HHhCCCCEEEEEecCCCEEhHHHHHHHHhcCc--eeECCCCEEEeccceecCCCCCCchHH--HHHHHHHHH-HHHHHHH
Confidence            356789999999   99999999999999998  9999999999999984  456654322  123333344 3457899


Q ss_pred             HHhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          76 EKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        76 ~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      +++|++.+.+++++++++|||++||+++||||+|++.
T Consensus       138 ~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~  174 (230)
T 3viv_A          138 QESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  174 (230)
T ss_dssp             HHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred             HHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence            9999999999999999999999999999999999864

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.57  E-value=1.2e-14  Score=118.70  Aligned_cols=104  Identities=16%  Similarity=0.107  Sum_probs=85.6

Q ss_pred             CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC------------------CC--------------C
Q psy5228           5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA------------------QG--------------Q   52 (114)
Q Consensus         5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~------------------~G--------------~   52 (114)
                      +.||++++. .++|.+.+|++++++  +++.|++.+++|+|....                  .|              +
T Consensus       120 gkpvva~~~-~aas~~y~lAsaad~--i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms  196 (593)
T 3bf0_A          120 GKPVYAVGE-NYSQGQYYLASFANK--IWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMS  196 (593)
T ss_dssp             TCCEEEEES-CEEHHHHHHHTTSSE--EEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCC
T ss_pred             CCeEEEEEc-cchhHHHHHHHhCCE--EEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCC
Confidence            368888864 478999999998877  999999999999998531                  02              1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcC-------CceecHHHHHHcCcceeecc
Q psy5228          53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDR-------DNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~-------~~~lta~eA~~~GliD~Ii~  111 (114)
                      ..+-+...+.|+.+.+.+.+.+++++|++.+++.+++++       +.|||++||+++||||+|..
T Consensus       197 ~~~re~~~~~l~~~~~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~  262 (593)
T 3bf0_A          197 PAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALAS  262 (593)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCC
Confidence            122234456677888889999999999999999999998       99999999999999999985

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.43  E-value=2.1e-12  Score=94.74  Aligned_cols=105  Identities=16%  Similarity=0.148  Sum_probs=86.8

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecC---------------------CccC---CC------CH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQP---------------------LGGA---QG------QA   53 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p---------------------~~~~---~G------~~   53 (114)
                      ++.||.+.+.|.|+|.|..|+++|+.  |++.|++.+.++-+                     ..+.   .+      +.
T Consensus        78 ~~kPVia~v~g~a~~gG~~lA~a~D~--i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~  155 (240)
T 3rst_A           78 TKKPIYVSMGSMAASGGYYISTAADK--IFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTK  155 (240)
T ss_dssp             HCCCEEEEEEEEEETHHHHHHTTSSE--EEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCH
T ss_pred             CCCeEEEEECCeehHhHHHHHHhCCe--eEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCH
Confidence            47899999999999999999999998  99999999999832                     1111   11      23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          54 SDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        54 ~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                      .+-+.....++...+.+.+.+++..+++.+++.++++... ++++||+++||||+|..
T Consensus       156 ~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~-~~a~~A~~~GLVD~i~~  212 (240)
T 3rst_A          156 EEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRV-YDGRQAKKLNLVDELGF  212 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCE-EEHHHHHHTTSSSEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCc-ccHHHHHHcCCCcccCC
Confidence            4445556677888999999999999999999999777665 59999999999999975

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.29  E-value=2e-11  Score=99.64  Aligned_cols=105  Identities=13%  Similarity=0.051  Sum_probs=84.2

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCC------------ccC-----------------CCCHH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPL------------GGA-----------------QGQAS   54 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~------------~~~-----------------~G~~~   54 (114)
                      .+.||.+.+.|.|+|.|..|+++|+.  |++.|++.+....+.            .|.                 .++..
T Consensus       370 ~~kPVia~v~g~AasgG~~iA~aaD~--iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~  447 (593)
T 3bf0_A          370 AGKPVVVSMGGMAASGGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPE  447 (593)
T ss_dssp             TTCCEEEEEEEEEETHHHHTTTTCSE--EEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHhCCE--EEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcCCCCCHH
Confidence            46899999999999999999999998  999999998765321            110                 12344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          55 DIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        55 ~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                      +.+...+.++.....+.+.+++..|++.+.++.+++... +|++||+++||||+|.+
T Consensus       448 ~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~-~ta~eA~~~GLVD~v~~  503 (593)
T 3bf0_A          448 AQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHV-WTGQDAKANGLVDSLGD  503 (593)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCE-EEHHHHHHHTSCSEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCC-cCHHHHHHCCCCcCccC
Confidence            444555667777788899999999999999987777654 59999999999999975

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=98.35  E-value=1.3e-06  Score=63.38  Aligned_cols=90  Identities=24%  Similarity=0.282  Sum_probs=66.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      .++.||.+.+-|.|.+.|.-++++||-  |++.++++|.+-...-|.. +... .               ..+.++.|  
T Consensus        93 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~~g-~---------------~~l~~~~g--  152 (233)
T 3r6h_A           93 SYPKPVVIACTGHAIAMGAFLLCSGDH--RVAAHAYNVQANEVAIGMTIPYAA-M---------------EVLKLRLT--  152 (233)
T ss_dssp             TCSSCEEEEECSEEETHHHHHHTTSSE--EEECTTCCEECCGGGGTCCCCHHH-H---------------HHHHHHSC--
T ss_pred             hCCCCEEEEECCcchHHHHHHHHhCCE--EEEeCCcEEECchhhhCCCCCccH-H---------------HHHHHHhC--
Confidence            568899999999999999999999998  9999999988766655542 2110 0               01122222  


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ...-.+++-....++++||+++||||+|++.
T Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  183 (233)
T 3r6h_A          153 PSAYQQAAGLAKTFFGETALAAGFIDEISLP  183 (233)
T ss_dssp             HHHHHHHHHSCCEECHHHHHHHTSCSEECCG
T ss_pred             HHHHHHHHHcCCcCCHHHHHHcCCCcEeeCH
Confidence            2334455556678999999999999999875

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=98.33  E-value=1.4e-06  Score=64.18  Aligned_cols=90  Identities=19%  Similarity=0.113  Sum_probs=66.1

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-|+++||.  |++.++++|.+.....|.   .|-..-+.                  +..
T Consensus        94 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------r~v  153 (260)
T 1mj3_A           94 TRIKKPVIAAVNGYALGGGCELAMMCDI--IYAGEKAQFGQPEILLGTIPGAGGTQRLT------------------RAV  153 (260)
T ss_dssp             GGCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGGGTCCCCSSTTTHHH------------------HHH
T ss_pred             HhCCCCEEEEECCEEEeHHHHHHHhCCE--EEEcCCCEEeCcccccCCCCCccHHHHHH------------------HHh
Confidence            3568899999999999999999999998  999999999887766442   23222221                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      |  ...-.+++-....++++||+++||||+|++..
T Consensus       154 G--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  186 (260)
T 1mj3_A          154 G--KSLAMEMVLTGDRISAQDAKQAGLVSKIFPVE  186 (260)
T ss_dssp             C--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECTT
T ss_pred             C--HHHHHHHHHcCCcCCHHHHHHcCCccEEeChH
Confidence            1  22334444455678999999999999998753

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=98.32  E-value=2e-06  Score=62.33  Aligned_cols=91  Identities=20%  Similarity=0.248  Sum_probs=67.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCC-ceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPN-SRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~-s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      .++.||.+.+-|.|.+.|.-++++||-  |++.++ ++|.+-...-|.. +...                ...+..+.  
T Consensus        92 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~p~~~g----------------~~~l~~~i--  151 (232)
T 3ot6_A           92 SHPFPIIVACPGHAVAKGAFLLLSADY--RIGVAGPFSIGLNEVQIGMTMHHAG----------------IELARDRL--  151 (232)
T ss_dssp             TCSSCEEEECCEEEETHHHHHHTTSSE--EEEECSSCCEECCTTTTTCCCCHHH----------------HHHHHHHS--
T ss_pred             cCCCCEEEEECCEeehHHHHHHHHCCE--EEEeCCCcEEECcccccCCCCchhH----------------HHHHHHHh--
Confidence            468899999999999999999999998  999998 7888766554432 2100                01112222  


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      ....-.+++-....++++||+++||||+|++..
T Consensus       152 g~~~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~  184 (232)
T 3ot6_A          152 RKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVE  184 (232)
T ss_dssp             CHHHHHHHHTSCCEECHHHHHHHTSCSEEECTT
T ss_pred             CHHHHHHHHHcCCccCHHHHHHCCCCCEecCHH
Confidence            234455666677889999999999999998753

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=98.32  E-value=9.9e-07  Score=64.59  Aligned_cols=91  Identities=16%  Similarity=0.058  Sum_probs=66.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|..-   +.-             ...+.+..|  .
T Consensus        92 ~~~kPvIAav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p---~~g-------------~~~l~r~vG--~  151 (253)
T 1uiy_A           92 TYPKPTVAAVNGPAVAGGAGLALACDL--VVMDEEARLGYTEVKIGFVA---ALV-------------SVILVRAVG--E  151 (253)
T ss_dssp             HCSSCEEEEECSCEETHHHHHHHTSSE--EEEETTCEEECCHHHHTCCC---HHH-------------HHHHHHHSC--H
T ss_pred             hCCCCEEEEECCeeeHHHHHHHHhCCE--EEEcCCcEEeCcccccCcCC---chH-------------HHHHHHHhC--H
Confidence            468899999999999999999999998  99999999887555444321   110             001222222  3


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      ..-.+++-....++++||+++||||+|++..
T Consensus       152 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  182 (253)
T 1uiy_A          152 KAAKDLLLTGRLVEAREAKALGLVNRIAPPG  182 (253)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSCSEEECTT
T ss_pred             HHHHHHHHhCCccCHHHHHHCCCcceecChh
Confidence            4445555566789999999999999998653

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=98.30  E-value=1.2e-06  Score=64.31  Aligned_cols=88  Identities=17%  Similarity=0.077  Sum_probs=65.2

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|...-+.                  +..|
T Consensus        92 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~vG  151 (257)
T 2ej5_A           92 HLEKPVVAAVNGAAAGAGMSLALACDF--RLLSEKASFAPAFIHVGLVPDAGHLYYLP------------------RLVG  151 (257)
T ss_dssp             HCCSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCGGGGTCCCCTTHHHHHH------------------HHHC
T ss_pred             hCCCCEEEEECccccchhHHHHHhCCE--EEEcCCCEEeCcccccCCCCcchHHHHHH------------------HHhC
Confidence            468899999999999999999999998  999999998887666553   22222211                  1112


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       152 --~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  182 (257)
T 2ej5_A          152 --RAKALELAVLGEKVTAEEAAALGLATKVIPL  182 (257)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHHTCCSEEECG
T ss_pred             --HHHHHHHHHhCCccCHHHHHHcCCcceecCh
Confidence              2233444445667999999999999999864

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=98.29  E-value=1.6e-06  Score=63.74  Aligned_cols=88  Identities=18%  Similarity=0.136  Sum_probs=65.6

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-....|.   .|...-+                  .+..|
T Consensus        93 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~vG  152 (258)
T 2pbp_A           93 IVKTPMIAAVNGLALGGGFELALSCDL--IVASSAAEFGFPEVNLGVMPGAGGTQRL------------------TKLIG  152 (258)
T ss_dssp             TCCSCEEEEECSEEETHHHHHHHTSSE--EEEETTCEEECGGGGGTCCCCSSHHHHH------------------HHHHC
T ss_pred             hCCCCEEEEEcCEEEhHHHHHHHhCCE--EEEcCCCEEECcccccCCCCcccHHHHH------------------HHHhC
Confidence            468899999999999999999999998  999999999887766553   2322221                  11122


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       153 --~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  183 (258)
T 2pbp_A          153 --PKRALEWLWTGARMSAKEAEQLGIVNRVVSP  183 (258)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHTTSCSEEECG
T ss_pred             --HHHHHHHHHcCCccCHHHHHHcCCcceeeCh
Confidence              2333444445567899999999999999864

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=98.29  E-value=1.2e-06  Score=65.02  Aligned_cols=90  Identities=16%  Similarity=0.118  Sum_probs=66.8

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-.+..|.   .|-..-+                  .+..
T Consensus       102 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~r~v  161 (272)
T 1hzd_A          102 ANLPVPTIAAIDGLALGGGLELALACDI--RVAASSAKMGLVETKLAIIPGGGGTQRL------------------PRAI  161 (272)
T ss_dssp             HTCSSCEEEEESEEEETHHHHHHHHSSE--EEEETTCEEECCGGGGTCCCCSSHHHHH------------------HHHH
T ss_pred             HhCCCCEEEEeCceEEecHHHHHHhCCE--EEEcCCCEEeCchhccCCCCCchHHHHH------------------HHHh
Confidence            3568899999999999999999999998  999999999887776553   2222211                  1112


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      |  ...-.+++-....++++||+++||||+|++..
T Consensus       162 G--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  194 (272)
T 1hzd_A          162 G--MSLAKELIFSARVLDGKEAKAVGLISHVLEQN  194 (272)
T ss_dssp             C--HHHHHHHHHHTCEEEHHHHHHHTSCSEEECCC
T ss_pred             C--HHHHHHHHHcCCcCCHHHHHHCCCcceecChh
Confidence            2  22334445456788999999999999998653

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=98.27  E-value=1.1e-06  Score=64.90  Aligned_cols=89  Identities=17%  Similarity=0.156  Sum_probs=65.7

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|...-+...                  .
T Consensus        99 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~------------------v  158 (265)
T 3kqf_A           99 EQLPQPVIAAINGIALGGGTELSLACDF--RIAAESASLGLTETTLAIIPGAGGTQRLPRL------------------I  158 (265)
T ss_dssp             HTCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCGGGGTCCCCSSHHHHHHHH------------------H
T ss_pred             HhCCCCEEEEECCeeehHHHHHHHhCCE--EEEcCCcEEECcccccCcCCCccHHHHHHHH------------------h
Confidence            3468899999999999999999999998  999999999887766553   2332222111                  1


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       159 G--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  190 (265)
T 3kqf_A          159 G--VGRAKELIYTGRRISAQEAKEYGLVEFVVPV  190 (265)
T ss_dssp             C--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHCCCccEEeCH
Confidence            1  2222334445567999999999999999874

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=98.27  E-value=4.1e-06  Score=61.54  Aligned_cols=90  Identities=12%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|-..-+..                  ..
T Consensus       102 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r------------------~v  161 (258)
T 3lao_A          102 PRRSKPLVVAVQGTCWTAGIELMLNADI--AVAARGTRFAHLEVLRGIPPLGGSTVRFPR------------------AA  161 (258)
T ss_dssp             SCCCSCEEEEECSEEETHHHHHHHTSSE--EEEETTCEEECGGGGTCCCSSCCCCSHHHH------------------HH
T ss_pred             HhCCCCEEEEECCEeEhHHHHHHHhCCE--EEEcCCCEEeCcccccCCCCCccHHHHHHH------------------Hh
Confidence            4578899999999999999999999998  999999998876665442   233222211                  11


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      |  ...-.+++-....++++||+++||||+|++..
T Consensus       162 G--~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~  194 (258)
T 3lao_A          162 G--WTDAMRYILTGDEFDADEALRMRLLTEVVEPG  194 (258)
T ss_dssp             C--HHHHHHHHTTCCCEEHHHHHHTTSCSEEECTT
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHcCCCcEeeChh
Confidence            1  22333455566779999999999999998753

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=98.27  E-value=1.3e-06  Score=64.83  Aligned_cols=89  Identities=20%  Similarity=0.136  Sum_probs=65.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ----GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~----G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|..    |-..-+..                  ..
T Consensus       111 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r------------------~v  170 (279)
T 3g64_A          111 ECPFPVIAALHGVAAGAGAVLALAADF--RVADPSTRFAFLFTRVGLSGGDMGAAYLLPR------------------VV  170 (279)
T ss_dssp             HSSSCEEEEECSEEETHHHHHHHHSSE--EEECTTCEEECCGGGGTCCSCCTTHHHHHHH------------------HH
T ss_pred             hCCCCEEEEEcCeeccccHHHHHhCCE--EEEeCCCEEeCchhhcCCCCCchhHHHHHHH------------------Hh
Confidence            468899999999999999999999998  9999999988766665543    22222211                  11


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      |  ...-.+++-....++++||+++||||+|++..
T Consensus       171 G--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  203 (279)
T 3g64_A          171 G--LGHATRLLMLGDTVRAPEAERIGLISELTEEG  203 (279)
T ss_dssp             C--HHHHHHHHHHCCCEEHHHHHHHTCCSEECCTT
T ss_pred             C--HHHHHHHHHcCCCcCHHHHHHCCCCCEecCch
Confidence            1  22233444455679999999999999998753

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=98.26  E-value=1.2e-06  Score=64.58  Aligned_cols=89  Identities=13%  Similarity=0.122  Sum_probs=65.7

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|...-+...                  .
T Consensus        95 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~------------------v  154 (261)
T 3pea_A           95 EKCSKPVIAAIHGAALGGGLEFAMSCHM--RFATESAKLGLPELTLGLIPGFAGTQRLPRY------------------V  154 (261)
T ss_dssp             HTCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCGGGGTCCCCSSHHHHHHHH------------------H
T ss_pred             HhCCCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEECcccccCcCCCccHHHHHHHH------------------h
Confidence            3568899999999999999999999998  999999998877666553   2332222111                  1


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       155 G--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  186 (261)
T 3pea_A          155 G--KAKACEMMLTSTPITGAEALKWGLVNGVFAE  186 (261)
T ss_dssp             C--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHCCCccEecCH
Confidence            1  2333344444567999999999999999865

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=98.26  E-value=1.9e-06  Score=62.91  Aligned_cols=90  Identities=13%  Similarity=0.180  Sum_probs=64.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|..-.   .--            . .+.+..|  .
T Consensus        92 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~---~g~------------~-~l~~~vG--~  151 (250)
T 2a7k_A           92 NVNKPTIAAVDGYAIGMGFQFALMFDQ--RLMASTANFVMPELKHGIGCS---VGA------------A-ILGFTHG--F  151 (250)
T ss_dssp             TCCSCEEEEECSEEETHHHHHHTTSSE--EEEETTCEEECCGGGGTCCCH---HHH------------H-HHHHHHC--H
T ss_pred             cCCCCEEEEECCeEeHHHHHHHHhCCE--EEEcCCCEEeCcccccCCCCC---cHH------------H-HHHHHhH--H
Confidence            468899999999999999999999998  999999998876655443211   000            0 1122222  2


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..-.+++-....++++||+++||||+|++.
T Consensus       152 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  181 (250)
T 2a7k_A          152 STMQEIIYQCQSLDAPRCVDYRLVNQVVES  181 (250)
T ss_dssp             HHHHHHHHHCCCBCHHHHHHHTCCSEEECH
T ss_pred             HHHHHHHHcCCcccHHHHHHcCCcceecCH
Confidence            233444545667999999999999999864

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=98.25  E-value=1e-06  Score=65.26  Aligned_cols=89  Identities=16%  Similarity=0.136  Sum_probs=66.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-....|.   .|-..                  .+.+..|
T Consensus       105 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG  164 (275)
T 1dci_A          105 KCPKPVIAAIHGGCIGGGVDLISACDI--RYCTQDAFFQVKEVDVGLAADVGTLQ------------------RLPKVIG  164 (275)
T ss_dssp             HSSSCEEEEECSEEETHHHHHHTTSSE--EEEETTCEEECCGGGGTSCCCSSHHH------------------HGGGTCS
T ss_pred             hCCCCEEEEECCeeeHHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCCccHHH------------------HHHHHhC
Confidence            468899999999999999999999998  999999999877766543   22211                  1223333


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      . ...-.+++-....++++||+++||||+|++.
T Consensus       165 ~-~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  196 (275)
T 1dci_A          165 N-RSLVNELTFTARKMMADEALDSGLVSRVFPD  196 (275)
T ss_dssp             C-HHHHHHHHHHCCEEEHHHHHHHTSSSEEESS
T ss_pred             c-HHHHHHHHHcCCCCCHHHHHHcCCcceecCC
Confidence            2 1344455555677999999999999999864

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=98.25  E-value=3.7e-06  Score=62.56  Aligned_cols=89  Identities=10%  Similarity=0.017  Sum_probs=66.7

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-....|..   |-..-+                  .+..|
T Consensus       119 ~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L------------------~r~vG  178 (280)
T 2f6q_A          119 DFPKPLIAVVNGPAVGISVTLLGLFDA--VYASDRATFHTPFSHLGQSPEGCSSYTF------------------PKIMS  178 (280)
T ss_dssp             SCCSCEEEEECSCEETHHHHGGGGCSE--EEEETTCEEECCTGGGTCCCCTTHHHHH------------------HHHHC
T ss_pred             cCCCCEEEEECCeeehHHHHHHHhCCE--EEECCCcEEECchHhhCCCCcccHHHHH------------------HHHhC
Confidence            568899999999999999999999998  9999999988876665532   222221                  11222


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ...-.+++-....++++||+++||||+|++..
T Consensus       179 --~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~  210 (280)
T 2f6q_A          179 --PAKATEMLIFGKKLTAGEACAQGLVTEVFPDS  210 (280)
T ss_dssp             --HHHHHHHHTTCCCEEHHHHHHTTSCSEEECTT
T ss_pred             --HHHHHHHHHcCCCCCHHHHHHCCCcceEECHH
Confidence              23344555566779999999999999998753

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=98.25  E-value=1.8e-06  Score=63.43  Aligned_cols=89  Identities=19%  Similarity=0.171  Sum_probs=65.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|...-+..                  ..|
T Consensus        90 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r------------------~vG  149 (255)
T 3p5m_A           90 SLPKPVIAGVHGAAVGFGCSLALACDL--VVAAPASYFQLAFTRVGLMPDGGASALLPL------------------LIG  149 (255)
T ss_dssp             HCSSCEEEEECSEEETHHHHHHHHSSE--EEECTTCEEECGGGGGTCCCCTTHHHHTHH------------------HHC
T ss_pred             hCCCCEEEEeCCeehhhHHHHHHHCCE--EEEcCCcEEeCcccccCcCCCccHHHHHHH------------------HhC
Confidence            468899999999999999999999998  999999998877666543   222222211                  111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ...-.+++-....++++||+++||||+|++..
T Consensus       150 --~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  181 (255)
T 3p5m_A          150 --RARTSRMAMTAEKISAATAFEWGMISHITSAD  181 (255)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHTTSCSEECCTT
T ss_pred             --HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCHH
Confidence              22223444455679999999999999998753

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=98.25  E-value=2.7e-06  Score=62.49  Aligned_cols=88  Identities=14%  Similarity=0.048  Sum_probs=66.9

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|..-...-|..+-..-                  +.+..|  .
T Consensus        96 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~pg~~~------------------l~~~vG--~  153 (254)
T 3isa_A           96 GSPSLTLALAHGRNFGAGVDLFAACKW--RYCTPEAGFRMPGLKFGLVLGTRR------------------FRDIVG--A  153 (254)
T ss_dssp             TCSSEEEEEECSEEETHHHHHHHHSSE--EEECTTCEEECCGGGGTCCCSHHH------------------HHHHHC--H
T ss_pred             hCCCCEEEEECCeEeecchhHHHhCCE--EEEcCCCEEECchhccCccHHHHH------------------HHHHcC--H
Confidence            467899999999999999999999998  999999999877666555432111                  112222  2


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..-.+++-....++++||+++||||+|++.
T Consensus       154 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  183 (254)
T 3isa_A          154 DQALSILGSARAFDADEARRIGFVRDCAAQ  183 (254)
T ss_dssp             HHHHHHHTTTCEEEHHHHHHTTSSSEECCG
T ss_pred             HHHHHHHHhCCCCcHHHHHHCCCccEEeCh
Confidence            334455566678999999999999999875

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=98.24  E-value=1.8e-06  Score=63.53  Aligned_cols=91  Identities=11%  Similarity=0.124  Sum_probs=64.9

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEec--CCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSL--PNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~--p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.  ++++|.+-....|..-...-               ...+.+..| 
T Consensus        95 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~~~a~f~~pe~~~Gl~p~~g~---------------~~~l~~~vG-  156 (260)
T 1sg4_A           95 QSNLVLVSAINGACPAGGCLVALTCDY--RILADNPRYCIGLNETQLGIIAPFWL---------------KDTLENTIG-  156 (260)
T ss_dssp             TCSSEEEEEECEEBCHHHHHHHTTSSE--EEEECCTTCCBSCCGGGGTCCCCHHH---------------HHHHHHHHC-
T ss_pred             cCCCCEEEEECCeeehHHHHHHHhCCE--EEEecCCCCEEeCchhhhCCCCchhH---------------HHHHHHHhC-
Confidence            467899999999999999999999998  9999  89998876665453222110               001122222 


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                       ...-.+++-....++++||+++||||+|++.
T Consensus       157 -~~~a~~llltg~~~~a~eA~~~GLv~~vv~~  187 (260)
T 1sg4_A          157 -HRAAERALQLGLLFPPAEALQVGIVDQVVPE  187 (260)
T ss_dssp             -HHHHHHHHHHTCCBCHHHHHHHTSSSEEECG
T ss_pred             -HHHHHHHHHcCCcCCHHHHHHcCCCCEecCH
Confidence             2233445445667999999999999999864

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=98.24  E-value=2.4e-06  Score=62.55  Aligned_cols=90  Identities=16%  Similarity=0.098  Sum_probs=64.6

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|-..-+...                  .
T Consensus        88 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~------------------v  147 (254)
T 3hrx_A           88 SGLEKPLVVAVNGVAAGAGMSLALWGDL--RLAAVGASFTTAFVRIGLVPDSGLSFLLPRL------------------V  147 (254)
T ss_dssp             HTCSSCEEEEECSEEETHHHHHHTTCSE--EEEETTCEEECCGGGGTCCCCTTHHHHHHHH------------------H
T ss_pred             HhCCCCEEEEECCEeeehhhhhhhccce--eeEcCCCEEEchhhCcCcCCcccHHHHHHHH------------------h
Confidence            3568899999999999999999999998  999999999876665443   2222222111                  1


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ....-.+++-....++++||+++||||+|+++.
T Consensus       148 --G~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~  180 (254)
T 3hrx_A          148 --GLAKAQELLLLSPRLSAEEALALGLVHRVVPAE  180 (254)
T ss_dssp             --CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             --CcchHHHHhhcCcccCHHHHHHCCCeEEecCcH
Confidence              112222333344678999999999999998753

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=98.24  E-value=6e-06  Score=60.88  Aligned_cols=90  Identities=10%  Similarity=0.043  Sum_probs=67.5

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|-..-+.                  +..
T Consensus        99 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------r~v  158 (265)
T 3swx_A           99 RQLSKPLLVAVHGKVLTLGIELALAADI--VIADETATFAQLEVNRGIYPFGGATIRFP------------------RTA  158 (265)
T ss_dssp             CCCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGGGTSCCCSSHHHHHH------------------HHH
T ss_pred             HhCCCCEEEEEcCeeehHHHHHHHHCCE--EEEcCCCEEECcccccccCCCccHHHHHH------------------HHh
Confidence            4578899999999999999999999998  999999999877665443   22222121                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      |  ...-.+++-....++++||+++||||+|++..
T Consensus       159 G--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  191 (265)
T 3swx_A          159 G--WGNAMRWMLTADTFDAVEAHRIGIVQEIVPVG  191 (265)
T ss_dssp             C--HHHHHHHHTTCCCEEHHHHHHTTSCSEEESTT
T ss_pred             h--HHHHHHHHHcCCcCCHHHHHHcCCCCEecChh
Confidence            1  23344556667789999999999999998753

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=98.23  E-value=3.6e-06  Score=62.46  Aligned_cols=89  Identities=15%  Similarity=0.115  Sum_probs=66.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|....+.                  +.. 
T Consensus       113 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L~------------------r~v-  171 (278)
T 4f47_A          113 RLKKPLIAAVEGPAIAGGTEILQGTDI--RVAAESAKFGISEAKWSLYPMGGSAVRLV------------------RQI-  171 (278)
T ss_dssp             CCSSCEEEEECSEEETHHHHHHTTCSE--EEEETTCEEECCGGGGTCCCTTSHHHHHH------------------HHS-
T ss_pred             CCCCCEEEEECCEEehHHHHHHHhCCE--EEEcCCCEEECcccccCCCCCccHHHHHH------------------HHh-
Confidence            678999999999999999999999998  999999998776665443   23332221                  111 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                       ....-.+++-....++++||+++||||+|++..
T Consensus       172 -G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  204 (278)
T 4f47_A          172 -PYTVACDLLLTGRHITAAEAKEMGLVGHVVPDG  204 (278)
T ss_dssp             -CHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTT
T ss_pred             -CHHHHHHHHHcCCcCCHHHHHHCCCceEeeChh
Confidence             223334444455679999999999999998753

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=98.23  E-value=2.4e-06  Score=62.70  Aligned_cols=88  Identities=15%  Similarity=0.120  Sum_probs=64.2

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|...-+....                  |
T Consensus        97 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v------------------G  156 (256)
T 3qmj_A           97 GFPKPLICAVNGLGVGIGATILGYADL--AFMSSTARLKCPFTSLGVAPEAASSYLLPQLV------------------G  156 (256)
T ss_dssp             HCCSCEEEEECSEEETHHHHGGGGCSE--EEEETTCEEECCGGGC---CCTTHHHHHHHHH------------------H
T ss_pred             hCCCCEEEEECCeehhHHHHHHHhCCE--EEEeCCCEEECcccccCCCCCccHHHHHHHHh------------------C
Confidence            468899999999999999999999998  999999999887666443   23222221111                  1


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       157 --~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  187 (256)
T 3qmj_A          157 --RQNAAWLLMSSEWIDAEEALRMGLVWRICSP  187 (256)
T ss_dssp             --HHHHHHHHHSCCCEEHHHHHHHTSSSEEECG
T ss_pred             --HHHHHHHHHcCCCCCHHHHHHCCCccEEeCH
Confidence              1122344445677899999999999999865

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=98.23  E-value=2.5e-06  Score=62.75  Aligned_cols=88  Identities=13%  Similarity=0.043  Sum_probs=64.6

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|..   |-..-+.                  +..|
T Consensus        99 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~vG  158 (261)
T 2gtr_A           99 QFKKPIIVAVNGPAIGLGASILPLCDV--VWANEKAWFQTPYTTFGQSPDGCSTVMFP------------------KIMG  158 (261)
T ss_dssp             HCCSCEEEEECSCEETHHHHTGGGSSE--EEEETTCEEECCTTTTTCCCCTTHHHHHH------------------HHHC
T ss_pred             hCCCCEEEEECCeEeeHHHHHHHhCCE--EEEcCCCEEeCchhccCCCccchHHHHHH------------------HHcC
Confidence            468899999999999999999999998  9999999988776665532   2222221                  1112


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       159 --~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  189 (261)
T 2gtr_A          159 --GASANEMLLSGRKLTAQEACGKGLVSQVFWP  189 (261)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHTTSCSEEECG
T ss_pred             --HHHHHHHHHcCCCCCHHHHHHCCCcccccCh
Confidence              2333344444566999999999999999864

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=98.22  E-value=2.9e-06  Score=62.88  Aligned_cols=88  Identities=17%  Similarity=0.112  Sum_probs=66.0

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|-..-+.                  +..|
T Consensus       105 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~vG  164 (273)
T 2uzf_A          105 IIPKPVIAMVKGYAVGGGNVLNVVCDL--TIAADNAIFGQTGPKVGSFDAGYGSGYLA------------------RIVG  164 (273)
T ss_dssp             HSSSCEEEEECEEEETHHHHHHHHSSE--EEEETTCEEECCGGGTTCCCCSTTTHHHH------------------HHHC
T ss_pred             hCCCCEEEEECCEEeehhHHHHHhCCE--EEEcCCCEEECchhhhCCCCchhHHHHHH------------------HHhC
Confidence            467899999999999999999999998  999999998877766543   23322221                  1112


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       165 --~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  195 (273)
T 2uzf_A          165 --HKKAREIWYLCRQYNAQEALDMGLVNTVVPL  195 (273)
T ss_dssp             --HHHHHHHHHTCCCEEHHHHHHHTSSSEEECG
T ss_pred             --HHHHHHHHHhCCCCCHHHHHHcCCCccccCH
Confidence              2233445556678999999999999999864

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=98.22  E-value=3.2e-06  Score=62.51  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=64.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-....|..   |...-+..                  ..|
T Consensus        97 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r------------------~vG  156 (266)
T 3fdu_A           97 RLSKPLIIAVKGVAIGIGVTILLQADL--VFADNTALFQIPFVSLGLSPEGGASQLLVK------------------QAG  156 (266)
T ss_dssp             HCCSCEEEEECSEEETHHHHGGGGCSE--EEECTTCEEECCTTTTTCCCCTTHHHHHHH------------------HHC
T ss_pred             hCCCCEEEEECCEEehHHHHHHHhCCE--EEEcCCCEEECchhhhCCCCcchHHHHHHH------------------HhC
Confidence            468899999999999999999999998  9999999998777665532   22222211                  111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                        ...-.+++-....++++||+++||||+|++
T Consensus       157 --~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~  186 (266)
T 3fdu_A          157 --YHKAAELLFTAKKFNAETALQAGLVNEIVE  186 (266)
T ss_dssp             --HHHHHHHHHHCCEECHHHHHHTTSCSEECS
T ss_pred             --HHHHHHHHHhCCCcCHHHHHHCCCHHHHHH
Confidence              222344444456799999999999999975

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=98.21  E-value=4.1e-06  Score=61.74  Aligned_cols=89  Identities=12%  Similarity=0.100  Sum_probs=66.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|+++||.  |++.++++|.+-...-|..   |...-+..                  .. 
T Consensus       100 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~------------------~v-  158 (265)
T 3rsi_A          100 TLTKPLIAAVNGACLGGGCEMLQQTDI--RVSDEHATFGLPEVQRGLVPGAGSMVRLKR------------------QI-  158 (265)
T ss_dssp             CCSSCEEEEECSCEETHHHHHHTTCSE--EEEETTCEEECGGGGGTCCCTTTHHHHHHH------------------HS-
T ss_pred             CCCCCEEEEECCeeeHHHHHHHHHCCE--EEecCCCEEECchhccCCCCCccHHHHHHH------------------Hh-
Confidence            678999999999999999999999998  9999999988766665432   22222211                  11 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                       ....-.+++-....++++||+++||||+|++..
T Consensus       159 -G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  191 (265)
T 3rsi_A          159 -PYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAG  191 (265)
T ss_dssp             -CHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTT
T ss_pred             -CHHHHHHHHHcCCCCCHHHHHHCCCccEecChh
Confidence             223334445456789999999999999998753

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=98.21  E-value=2.4e-06  Score=63.06  Aligned_cols=90  Identities=18%  Similarity=0.217  Sum_probs=66.6

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|..+. --.               ..+.+..  ..
T Consensus       102 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~~~-g~~---------------~~l~r~v--G~  161 (263)
T 3l3s_A          102 HCPKPTIALVEGIATAAGLQLMAACDL--AYASPAARFCLPGVQNGGFCT-TPA---------------VAVSRVI--GR  161 (263)
T ss_dssp             TCSSCEEEEESSEEETHHHHHHHHSSE--EEECTTCEEECCTTTTTSCCH-HHH---------------HHHHTTS--CH
T ss_pred             hCCCCEEEEECCEEEHHHHHHHHHCCE--EEecCCCEEeCchhccCCCCc-cHH---------------HHHHHHc--CH
Confidence            468899999999999999999999998  999999998876666554421 110               0111222  23


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..-.+++-....++++||+++||||+|++.
T Consensus       162 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~  191 (263)
T 3l3s_A          162 RAVTEMALTGATYDADWALAAGLINRILPE  191 (263)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSSSEECCH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEEeCH
Confidence            444555556677999999999999999864

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=98.20  E-value=2.1e-06  Score=64.24  Aligned_cols=90  Identities=19%  Similarity=0.075  Sum_probs=66.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|..-..--               .. +.+..|  .
T Consensus       124 ~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~p~~g~---------------~~-L~r~vG--~  183 (287)
T 2vx2_A          124 NHPVPVIAMVNGLATAAGCQLVASCDI--AVASDKSSFATPGVNVGLFCSTPG---------------VA-LARAVP--R  183 (287)
T ss_dssp             TCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCGGGGTCCCHHHH---------------HH-HHTTSC--H
T ss_pred             hCCCCEEEEECCEEEcHHHHHHHhCCE--EEEcCCCEEECchhhhCCCCchHH---------------HH-HHHHhh--H
Confidence            568899999999999999999999998  999999998876665543211000               01 222223  3


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..-.+++-....++++||+++||||+|++.
T Consensus       184 ~~A~~llltg~~i~A~eA~~~GLv~~vv~~  213 (287)
T 2vx2_A          184 KVALEMLFTGEPISAQEALLHGLLSKVVPE  213 (287)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred             HHHHHHHHhCCCCCHHHHHHCCCcceecCH
Confidence            344455555677999999999999999864

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=98.20  E-value=3.1e-06  Score=63.43  Aligned_cols=88  Identities=13%  Similarity=0.072  Sum_probs=66.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|-..-+                  .+..|
T Consensus       117 ~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~p~~g~~~~L------------------~r~vG  176 (291)
T 2fbm_A          117 QFKKPIVVSVNGPAIGLGASILPLCDL--VWANEKAWFQTPYTTFGQSPDGCSSITF------------------PKMMG  176 (291)
T ss_dssp             HCCSCEEEEECSCEETHHHHTGGGSSE--EEEETTCEEECCHHHHTCCCCTTHHHHH------------------HHHHC
T ss_pred             hCCCCEEEEECCeeecHHHHHHHhCCE--EEEeCCCEEECcHHhcCCCCcccHHHHH------------------HHHHh
Confidence            468899999999999999999999998  999999998876655442   2221111                  11122


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       177 --~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~  207 (291)
T 2fbm_A          177 --KASANEMLIAGRKLTAREACAKGLVSQVFLT  207 (291)
T ss_dssp             --HHHHHHHHTSCCEEEHHHHHHTTSCSEEECS
T ss_pred             --HHHHHHHHHcCCccCHHHHHHCCCcceecCh
Confidence              2344556666778999999999999999865

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=98.20  E-value=3.3e-06  Score=62.82  Aligned_cols=89  Identities=12%  Similarity=0.119  Sum_probs=66.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-....|.   .|-..-+.                  +..|
T Consensus       104 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L~------------------r~vG  163 (275)
T 3hin_A          104 YCRVPVIAALKGAVIGGGLELACAAHI--RVAEASAYYALPEGSRGIFVGGGGSVRLP------------------RLIG  163 (275)
T ss_dssp             TCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGGGTCCCCSSHHHHHH------------------HHHC
T ss_pred             hCCCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEECchhccCCCCCccHHHHHH------------------HHhC
Confidence            468899999999999999999999998  999999999877766553   22222221                  1112


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ...-.+++-....++++||+++||||+|++..
T Consensus       164 --~~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~  195 (275)
T 3hin_A          164 --VARMADMMLTGRVYSAAEGVVHGFSQYLIENG  195 (275)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHHTSCSEEESSS
T ss_pred             --HHHHHHHHHcCCCCCHHHHHHCCCCCEEeChh
Confidence              23333444456789999999999999998753

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=98.19  E-value=3.6e-06  Score=62.16  Aligned_cols=89  Identities=19%  Similarity=0.085  Sum_probs=63.6

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|-..-+....                  
T Consensus        95 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v------------------  154 (265)
T 3qxz_A           95 FELRTPVIAAVNGHAIGIGMTLALHADI--RILAEEGRYAIPQVRFGVAPDALAHWTLPRLV------------------  154 (265)
T ss_dssp             GGSSSCEEEEECSEEETHHHHHHTTSSE--EEEETTCCEECCGGGGTSCCCTTHHHHTHHHH------------------
T ss_pred             HhCCCCEEEEECCEEehHhHHHHHHCCE--EEEcCCCEEECcccccCcCCCccHHHHHHHHh------------------
Confidence            4568899999999999999999999998  999999998876665443   22222221111                  


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       155 G--~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~  186 (265)
T 3qxz_A          155 G--TAVAAELLLTGASFSAQRAVETGLANRCLPA  186 (265)
T ss_dssp             H--HHHHHHHHHHCCCBCHHHHHHHTSCSEEECH
T ss_pred             C--HHHHHHHHHcCCCcCHHHHHHCCCccEeeCH
Confidence            0  1111233334457899999999999999864

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=98.19  E-value=2.8e-06  Score=63.35  Aligned_cols=88  Identities=20%  Similarity=0.211  Sum_probs=65.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|...-+..                  ..|
T Consensus       113 ~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~p~~g~~~~L~r------------------~vG  172 (277)
T 4di1_A          113 AIPKPTVAAVTGYALGAGLTLALAADW--RVSGDNVKFGATEILAGLIPGGGGMGRLTR------------------VVG  172 (277)
T ss_dssp             HCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGGGTCCCCTTHHHHHHH------------------HHC
T ss_pred             hCCCCEEEEECCeEehhHHHHHHhCCE--EEEcCCCEEECcccccCCCCCchHHHHHHH------------------HhC
Confidence            468899999999999999999999998  999999999876666543   222222211                  111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       173 --~~~A~~llltG~~i~A~eA~~~GLV~~vv~~  203 (277)
T 4di1_A          173 --SSRAKELVFSGRFFDAEEALALGLIDDMVAP  203 (277)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred             --HHHHHHHHHcCCCCCHHHHHHCCCccEEeCh
Confidence              2233344445678999999999999999875

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=98.19  E-value=2.7e-06  Score=63.37  Aligned_cols=88  Identities=14%  Similarity=0.068  Sum_probs=65.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|...-+..                  ..|
T Consensus       113 ~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~p~~g~~~~L~r------------------~vG  172 (278)
T 3h81_A          113 AVRTPTIAAVAGYALGGGCELAMMCDV--LIAADTAKFGQPEIKLGVLPGMGGSQRLTR------------------AIG  172 (278)
T ss_dssp             TCCSCEEEEECBEEETHHHHHHHHSSE--EEEETTCEEECGGGGGTCCCCSSHHHHHHH------------------HHC
T ss_pred             hCCCCEEEEECCeeehHHHHHHHHCCE--EEEcCCCEEECchhhcCcCCCccHHHHHHH------------------HhC
Confidence            468899999999999999999999998  999999999877766553   232222211                  111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       173 --~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~  203 (278)
T 3h81_A          173 --KAKAMDLILTGRTMDAAEAERSGLVSRVVPA  203 (278)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred             --HHHHHHHHHhCCCcCHHHHHHCCCccEEeCh
Confidence              2233344445567999999999999999875

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=98.19  E-value=3.6e-06  Score=61.97  Aligned_cols=89  Identities=15%  Similarity=0.096  Sum_probs=65.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|-..-+.                  +..|
T Consensus        93 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------r~vG  152 (258)
T 4fzw_A           93 AFNKPLIAAVNGYALGAGCELALLCDV--VVAGENARFGLPEITLGIMPGAGGTQRLI------------------RSVG  152 (258)
T ss_dssp             TCCSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCGGGGTCCCCSSHHHHHH------------------HHHC
T ss_pred             HCCCCEEEEEcCcceeeeeEeecccce--EEECCCCEEECcccCCCcCCCchHHHHHH------------------HHhC
Confidence            467899999999999999999999998  999999999876665553   22222211                  1111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ...-.+++-....++++||+++||||+|+++.
T Consensus       153 --~~~A~~llltg~~i~a~eA~~~GLv~~vv~~~  184 (258)
T 4fzw_A          153 --KSLASKMVLSGESITAQQAQQAGLVSDVFPSD  184 (258)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHHTSCSEEECTT
T ss_pred             --HHHHHHHHHcCCcCcHHHHHHCCCeeEEeCch
Confidence              22233444456789999999999999998754

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=98.19  E-value=1.8e-06  Score=63.59  Aligned_cols=89  Identities=17%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+....-|.   .|-..-+.                  +..
T Consensus        89 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~------------------r~v  148 (256)
T 3pe8_A           89 PDMTKPVIGAINGAAVTGGLELALYCDI--LIASENAKFADTHARVGLMPTWGLSVRLP------------------QKV  148 (256)
T ss_dssp             CCCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHTCCCCSSHHHHHH------------------HHH
T ss_pred             HhCCCCEEEEECCeeechHHHHHHhCCE--EEEcCCCEEECchhhhCCCCcccHHHHHH------------------Hhc
Confidence            4568899999999999999999999998  999999999876655442   22222221                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       149 G--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  180 (256)
T 3pe8_A          149 G--VGLARRMSLTGDYLSAQDALRAGLVTEVVAH  180 (256)
T ss_dssp             C--HHHHHHHHHHCCCEEHHHHHHHTSCSCEECG
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHCCCCeEEeCH
Confidence            1  2223344445567999999999999999875

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=98.19  E-value=6.2e-06  Score=60.62  Aligned_cols=88  Identities=14%  Similarity=0.141  Sum_probs=65.8

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      ++.||.+.+-|.|.+.|.-|+++||.  |++.++++|..-...-|.   .|...-+                  .+..  
T Consensus        92 ~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~r~v--  149 (256)
T 3trr_A           92 PRKPIIAAVEGFALAGGTELVLSCDL--VVAGRSAKFGIPEVKRGLVAGAGGLLRL------------------PNRI--  149 (256)
T ss_dssp             CSSCEEEEECSBCCTHHHHHHHTSSE--EEEETTCEECCCGGGGTCCCCSSHHHHH------------------HHHS--
T ss_pred             CCCCEEEEECCeeeechhHHHHhCCE--EEECCCCEEEehhhccCCCCCccHHHHH------------------HHHh--
Confidence            57899999999999999999999998  999999998766555443   2222222                  1112  


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      ....-.+++-....++++||+++||||+|++..
T Consensus       150 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  182 (256)
T 3trr_A          150 PYQVAMELALTGESFTAEDAAKYGFINRLVDDG  182 (256)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHGGGTCCSEEECTT
T ss_pred             CHHHHHHHHHhCCCcCHHHHHHCCCeeEecChH
Confidence            234445555566789999999999999998753

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=98.17  E-value=4e-06  Score=62.25  Aligned_cols=89  Identities=9%  Similarity=0.041  Sum_probs=65.7

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|..   |-..-+                  .+..
T Consensus       103 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~r~v  162 (276)
T 2j5i_A          103 RMYAKPTIAMVNGWCFGGGFSPLVACDL--AICADEATFGLSEINWGIPPGNLVSKAM------------------ADTV  162 (276)
T ss_dssp             TTCSSCEEEEECSCEEGGGHHHHHHSSE--EEEETTCEEECGGGGGTCCCCTTHHHHH------------------HHHS
T ss_pred             HhCCCCEEEEECCeeehhHHHHHHhCCE--EEEcCCCEEeCcccccCCCCcchHHHHH------------------HHHh
Confidence            4568899999999999999999999998  9999999988766654432   222211                  1122


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       163 G--~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~  194 (276)
T 2j5i_A          163 G--HRQSLMYIMTGKTFGGQKAAEMGLVNESVPL  194 (276)
T ss_dssp             C--HHHHHHHHHHCCEEEHHHHHHHTSSSEEECH
T ss_pred             C--HHHHHHHHHhCCcccHHHHHHcCCccEeeCH
Confidence            2  2333445555678999999999999999863

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=98.17  E-value=4.6e-06  Score=61.93  Aligned_cols=89  Identities=18%  Similarity=0.128  Sum_probs=65.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-.+.-|..   |-..-+..                  .. 
T Consensus       109 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r------------------~v-  167 (274)
T 4fzw_C          109 KLPKPVICAVNGVAAGAGATLALGGDI--VIAARSAKFVMAFSKLGLIPDCGGTWLLPR------------------VA-  167 (274)
T ss_dssp             HCSSCEEEEECSCEETHHHHHHHTSSE--EEEETTCEEECCGGGTTCCCTTTHHHHHHH------------------HT-
T ss_pred             HCCCCEEEEECCceeecCceeeeccce--EEECCCCEEECcccCcccCCCccHHHHHHH------------------Hh-
Confidence            468899999999999999999999998  9999999998776665532   22222211                  11 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                       ....-.+++-....++++||+++||||+|++..
T Consensus       168 -G~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~  200 (274)
T 4fzw_C          168 -GRARAMGLALLGNQLSAEQAHEWGMIWQVVDDE  200 (274)
T ss_dssp             -CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGG
T ss_pred             -hHHHHHHHHHhCCcCCHHHHHHCCCceEEeChH
Confidence             122233344455679999999999999998753

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=98.16  E-value=3.1e-06  Score=63.65  Aligned_cols=89  Identities=12%  Similarity=0.062  Sum_probs=65.6

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|-..-+.                  +..
T Consensus       127 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L~------------------r~v  186 (298)
T 3qre_A          127 TMLRKPVIAAINGPCVGIGLTQALMCDV--RFAAAGAKFAAVFARRGLIAEFGISWILP------------------RLT  186 (298)
T ss_dssp             GGSSSCEEEEECSCEETHHHHHHHHSSE--EEEETTCEEECCCCHHHHHCTTSHHHHHH------------------HHS
T ss_pred             HhCCCCEEEEECCceeecchHHHhhCCE--EEEcCCCEEECcccccCCCcchhHHHHHH------------------Hhc
Confidence            4568899999999999999999999998  999999998876655332   22222221                  111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       187 G--~~~A~ellltg~~i~A~eA~~~GLV~~vv~~  218 (298)
T 3qre_A          187 S--WAVALDLLLSGRTFLAEEAAQLGLVKEVVTP  218 (298)
T ss_dssp             C--HHHHHHHHHHCCEEEHHHHHHTTSCSEEECG
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHcCCCeEecCH
Confidence            2  2333444545668999999999999999865

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=98.16  E-value=2.9e-06  Score=62.64  Aligned_cols=89  Identities=15%  Similarity=0.088  Sum_probs=65.6

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|...-+..                  ..
T Consensus        97 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~------------------~v  156 (263)
T 3moy_A           97 TQVRKPIVAAVAGYALGGGCELAMLCDL--VIAADTARFGQPEITLGILPGLGGTQRLTR------------------AV  156 (263)
T ss_dssp             TTCCSCEEEEECBEEETHHHHHHHHSSE--EEEETTCEEECGGGGGTCCCSSSTTTHHHH------------------HH
T ss_pred             HhCCCCEEEEECCEeehHHHHHHHHCCE--EEecCCCEEeCcccccCCCCchhHHHHHHH------------------Hh
Confidence            3568899999999999999999999998  999999998877666443   233222211                  11


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       157 G--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  188 (263)
T 3moy_A          157 G--KAKAMDLCLTGRSLTAEEAERVGLVSRIVPA  188 (263)
T ss_dssp             C--HHHHHHHHHHCCEEEHHHHHHTTSCSEEECG
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHCCCccEecCc
Confidence            1  1223344445678999999999999999865

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=98.16  E-value=2.2e-06  Score=63.15  Aligned_cols=88  Identities=14%  Similarity=0.126  Sum_probs=64.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCc-eeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNS-RIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s-~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.+++ +|.+-...-|.   .|-..-+                  .+..
T Consensus        99 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~ag~f~~pe~~~Gl~p~~g~~~~l------------------~~~v  158 (265)
T 2ppy_A           99 RSPQVYIACLEGHTVGGGLEMALACDL--RFMGDEAGKIGLPEVSLGVLAGTGGTQRL------------------ARLI  158 (265)
T ss_dssp             HSSSEEEEEECSEEETHHHHHHHTSSE--EEEETTCCCEECCGGGGTCCCTTTHHHHH------------------HHHH
T ss_pred             cCCCCEEEEECCEEeeHHHHHHHhCCE--EEEeCCCCEEECcccccCCCCCchHHHHH------------------HHHh
Confidence            468899999999999999999999998  9999999 98876665443   2222211                  1122


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       159 G--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  190 (265)
T 2ppy_A          159 G--YSRALDMNITGETITPQEALEIGLVNRVFPQ  190 (265)
T ss_dssp             C--HHHHHHHHHHCCCBCHHHHHHHTSSSEEECG
T ss_pred             C--HHHHHHHHHhCCccCHHHHHHCCCcceecCH
Confidence            2  2233344444567999999999999999864

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=98.15  E-value=1.5e-06  Score=64.08  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=64.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|-..-+..                  .. 
T Consensus        99 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~------------------~v-  157 (263)
T 3lke_A           99 TSPKVTVALINGYAYGGGFNMMLACDR--RIALRRAKFLENFHKMGISPDLGASYFLPR------------------II-  157 (263)
T ss_dssp             TCSSEEEEEECSEEETHHHHGGGGSSE--EEEETTCEEECCHHHHTCCCCTTHHHHHHH------------------HH-
T ss_pred             hCCCCEEEEECCEeeHHHHHHHHHCCE--EEEcCCCEEeCchHhhCCCCCccHHHHHHH------------------Hh-
Confidence            468899999999999999999999998  999999998876655442   222222211                  11 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                       ....-.+++-....++++||+++||||+|++
T Consensus       158 -G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~  188 (263)
T 3lke_A          158 -GYEQTMNLLLEGKLFTSEEALRLGLIQEICE  188 (263)
T ss_dssp             -CHHHHHHHHHHCCCEEHHHHHHHTSSSEEES
T ss_pred             -CHHHHHHHHHhCCCcCHHHHHHcCCCcEecC
Confidence             1233344444556899999999999999986

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=98.15  E-value=3.7e-06  Score=62.28  Aligned_cols=88  Identities=14%  Similarity=0.057  Sum_probs=64.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-CC-HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQ-ASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G~-~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-....|.. +- ..-+                  .+..| 
T Consensus        97 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~l------------------~~~vG-  155 (268)
T 3i47_A           97 QSPKPTIAMVQGAAFGGGAGLAAACDI--AIASTSARFCFSEVKLGLIPAVISPYV------------------VRAIG-  155 (268)
T ss_dssp             HCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCGGGGTCCCTTTHHHH------------------HHHHC-
T ss_pred             hCCCCEEEEECCEEEhHhHHHHHhCCE--EEEcCCCEEECcccccCCCcccHHHHH------------------HHHhC-
Confidence            468899999999999999999999998  9999999987766554432 11 1111                  11111 


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                       ...-.+++-....++++||+++||||+|++.
T Consensus       156 -~~~A~~llltg~~i~A~eA~~~GLV~~vv~~  186 (268)
T 3i47_A          156 -ERAAKMLFMSAEVFDATRAYSLNLVQHCVPD  186 (268)
T ss_dssp             -HHHHHHHHHHCCEEEHHHHHHTTSCSEEECG
T ss_pred             -HHHHHHHHHcCCccCHHHHHHcCCCcEeeCh
Confidence             2233444555678999999999999999875

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=98.13  E-value=7.8e-06  Score=60.43  Aligned_cols=89  Identities=18%  Similarity=0.136  Sum_probs=66.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|...-+                  .+..|
T Consensus        99 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L------------------~r~vG  158 (267)
T 3r9t_A           99 FIDKPTIAAVNGTALGGGTELALASDL--VVADERAQFGLPEVKRGLIAAAGGVFRI------------------AEQLP  158 (267)
T ss_dssp             CCSSCEEEEECSEECTHHHHHHHHSSE--EEEETTCEECCGGGGTTCCCTTTHHHHH------------------HHHSC
T ss_pred             hCCCCEEEEECCEEEhHHHHHHHhCCE--EEEcCCCEEECcccccCCCCCccHHHHH------------------HHHcC
Confidence            468899999999999999999999998  999999999876665443   2222111                  11112


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ...-.+++-....++++||+++||||+|++..
T Consensus       159 --~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~  190 (267)
T 3r9t_A          159 --RKVAMRLLLTGEPLSAAAARDWGLINEVVEAG  190 (267)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHHTSSSEEECTT
T ss_pred             --HHHHHHHHHcCCCCCHHHHHHCCCccEEcChh
Confidence              23344455556789999999999999998753

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=98.13  E-value=2.1e-06  Score=63.26  Aligned_cols=88  Identities=11%  Similarity=0.001  Sum_probs=64.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|-..-+                  .+..|
T Consensus       102 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~r~vG  161 (264)
T 1wz8_A          102 NFPRPVVAAVEKVAVGAGLALALAADI--AVVGKGTRLLDGHLRLGVAAGDHAVLLW------------------PLLVG  161 (264)
T ss_dssp             HSSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHTSCCTTTHHHHT------------------HHHHC
T ss_pred             cCCCCEEEEECCeeechhHHHHHhCCE--EEecCCCEEeCchhhcCcCCCccHHHHH------------------HHHhC
Confidence            468899999999999999999999998  999999998876655442   2222211                  11112


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       162 --~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  192 (264)
T 1wz8_A          162 --MAKAKYHLLLNEPLTGEEAERLGLVALAVED  192 (264)
T ss_dssp             --HHHHHHHHHHTCCEEHHHHHHHTSSSEEECG
T ss_pred             --HHHHHHHHHcCCCCCHHHHHHCCCceeecCh
Confidence              2233444445567999999999999999864

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=98.13  E-value=3.7e-06  Score=62.84  Aligned_cols=90  Identities=18%  Similarity=0.128  Sum_probs=66.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|..+. --.               ..+.+.  ...
T Consensus       117 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~~~-g~~---------------~~L~r~--vG~  176 (286)
T 3myb_A          117 RLPAPVIARVHGIATAAGCQLVAMCDL--AVATRDARFAVSGINVGLFCS-TPG---------------VALSRN--VGR  176 (286)
T ss_dssp             HSSSCEEEEECSCEETHHHHHHHHSSE--EEEETTCEEECGGGGGTCCCH-HHH---------------HHHTTT--SCH
T ss_pred             cCCCCEEEEECCeehHHHHHHHHhCCE--EEEcCCCEEECcccccCCCCc-hHH---------------HHHHHH--cCH
Confidence            468899999999999999999999998  999999998877666554421 110               011111  223


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..-.+++-....++++||+++||||+|++.
T Consensus       177 ~~A~~llltG~~i~A~eA~~~GLv~~vv~~  206 (286)
T 3myb_A          177 KAAFEMLVTGEFVSADDAKGLGLVNRVVAP  206 (286)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCcEecCH
Confidence            344555555667999999999999999864

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=98.13  E-value=5.5e-06  Score=61.15  Aligned_cols=89  Identities=13%  Similarity=0.075  Sum_probs=64.6

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|-..-+..                  ..|
T Consensus        99 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r------------------~vG  158 (262)
T 3r9q_A           99 RLSKPVIAAISGHAVAGGIELALWCDL--RVVEEDAVLGVFCRRWGVPLIDGGTIRLPR------------------LIG  158 (262)
T ss_dssp             CCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECTHHHHTCCCCSSHHHHHHH------------------HHC
T ss_pred             hCCCCEEEEECCeeehhhhHHHHhCCE--EEEeCCCEEecchhccCCCCCccHHHHHHH------------------HhC
Confidence            467899999999999999999999998  999999998765544332   222222211                  111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ...-.+++-....++++||+++||||+|++..
T Consensus       159 --~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~  190 (262)
T 3r9q_A          159 --HSRAMDLILTGRPVHANEALDIGLVNRVVARG  190 (262)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHTTSCSEEECTT
T ss_pred             --HHHHHHHHHcCCcCCHHHHHHcCCccEecChh
Confidence              22333444455689999999999999998753

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=98.13  E-value=8.2e-06  Score=60.26  Aligned_cols=87  Identities=13%  Similarity=0.043  Sum_probs=65.0

Q ss_pred             CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      +.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|-..-+..                  ..  .
T Consensus       102 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~------------------~v--G  159 (265)
T 3qxi_A          102 AKPLIAAVEGYALAGGTELALATDL--IVAARDSAFGIPEVKRGLVAGGGGLLRLPE------------------RI--P  159 (265)
T ss_dssp             SSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGGGTCCCCSSHHHHHHH------------------HS--C
T ss_pred             CCCEEEEECCceeHHHHHHHHhCCE--EEEcCCCEEECcccccCcCCcccHHHHHHH------------------Hh--C
Confidence            6799999999999999999999998  999999998877665443   222222211                  11  2


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      ...-.+++-....++++||+++||||+|++..
T Consensus       160 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  191 (265)
T 3qxi_A          160 YAIAMELALTGDNLSAERAHALGMVNVLAEPG  191 (265)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHTTSCSEEECTT
T ss_pred             HHHHHHHHHcCCCcCHHHHHHCCCccEeeChh
Confidence            33334555566789999999999999998753

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=98.12  E-value=4.7e-06  Score=62.33  Aligned_cols=88  Identities=15%  Similarity=0.056  Sum_probs=63.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-C---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-Q---GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|. -   |-..-+..                  ..
T Consensus       121 ~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r------------------~v  180 (290)
T 3sll_A          121 RMHQPVIAAINGAAIGGGLCLALACDV--RVASQDAYFRAAGINNGLTASELGLSYLLPR------------------AI  180 (290)
T ss_dssp             HCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECTTTTTTSCSCCTTHHHHHHH------------------HH
T ss_pred             hCCCCEEEEECCeehHHHHHHHHHCCE--EEEeCCCEEECchhccCcCCCcccHHHHHHH------------------Hh
Confidence            468899999999999999999999998  999999998776555442 1   22222211                  11


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       181 G--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~  212 (290)
T 3sll_A          181 G--TSRASDIMLTGRDVDADEAERIGLVSRKVAS  212 (290)
T ss_dssp             C--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHCCCccEEeCh
Confidence            1  2223344444567999999999999999875

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=98.12  E-value=2.3e-06  Score=63.46  Aligned_cols=88  Identities=14%  Similarity=0.063  Sum_probs=64.6

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|-..-+...                  .|
T Consensus       105 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~------------------vG  164 (272)
T 3qk8_A          105 NLDKPVVSAIRGPAVGAGLVVALLADI--SVASATAKIIDGHTKLGVAAGDHAAICWPLL------------------VG  164 (272)
T ss_dssp             TCCSCEEEEECSEEEHHHHHHHHHSSE--EEEETTCEEECCHHHHTSCSCSSHHHHTHHH------------------HC
T ss_pred             hCCCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEECchhccCCCCCccHHHHHHHH------------------hC
Confidence            568899999999999999999999998  999999998876655442   2222222111                  11


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       165 --~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~  195 (272)
T 3qk8_A          165 --MAKAKYYLLTCETLSGEEAERIGLVSTCVDD  195 (272)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG
T ss_pred             --HHHHHHHHHcCCCCCHHHHHHCCCCcEeeCH
Confidence              2223344445568999999999999999875

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=98.11  E-value=3.5e-06  Score=61.50  Aligned_cols=88  Identities=11%  Similarity=-0.078  Sum_probs=63.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-....|.   .|...-+                  .+..|
T Consensus        88 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~vG  147 (243)
T 2q35_A           88 DCEIPIIAAMQGHSFGGGLLLGLYADF--VVFSQESVYATNFMKYGFTPVGATSLIL------------------REKLG  147 (243)
T ss_dssp             TCCSCEEEEECSEEETHHHHHHHTSSE--EEEESSSEEECCHHHHTSCCCSSHHHHH------------------HHHHC
T ss_pred             hCCCCEEEEEcCccccchHHHHHhCCE--EEEeCCCEEECCccccCCCCcchHHHHH------------------HHHhC
Confidence            468899999999999999999999998  999999998776554442   2222111                  11112


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       148 --~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  178 (243)
T 2q35_A          148 --SELAQEMIYTGENYRGKELAERGIPFPVVSR  178 (243)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHTTCSSCEECH
T ss_pred             --HHHHHHHHHcCCCCCHHHHHHcCCCCEecCh
Confidence              2223344445567999999999999999864

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=98.10  E-value=3.8e-06  Score=62.19  Aligned_cols=91  Identities=15%  Similarity=0.058  Sum_probs=64.2

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|..- .--               ...+.+..|  
T Consensus       107 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p-~g~---------------~~~L~r~vG--  166 (274)
T 3tlf_A          107 RTMAKPVLTAVNGICCGAGMDWVTTTDI--VIASEQATFFDPHVSIGLVA-GRE---------------LVRVSRVLP--  166 (274)
T ss_dssp             TSCCSCEEEEECSEEEGGGHHHHHHSSE--EEEETTCEEECCGGGGTCCC-CHH---------------HHHHTTTSC--
T ss_pred             HhCCCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEECcccccCccc-chH---------------HHHHHHHhC--
Confidence            4567899999999999999999999998  99999999887665544321 100               111122222  


Q ss_pred             HHHHHhhhcCCc--eecHHHHHHcCcceeeccc
Q psy5228          82 VKKISQDTDRDN--FMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        82 ~~~i~~~m~~~~--~lta~eA~~~GliD~Ii~~  112 (114)
                      ...-.+++-...  .++++||+++||||+|++.
T Consensus       167 ~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~  199 (274)
T 3tlf_A          167 RSIALRMALMGKHERMSAQRAYELGLISEIVEH  199 (274)
T ss_dssp             HHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECG
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHCCCCCeecCH
Confidence            222333333334  8999999999999999865

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=98.09  E-value=5.4e-06  Score=61.59  Aligned_cols=88  Identities=15%  Similarity=0.056  Sum_probs=64.9

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEec-CCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSL-PNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~-p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++. ++++|.+-....|.   .|-..-+                  .+..
T Consensus       110 ~~~kPvIAav~G~a~GgG~~LalacD~--~ia~~~~a~f~~pe~~lGl~p~~g~~~~l------------------~r~v  169 (280)
T 1pjh_A          110 KHSKVLICCLNGPAIGLSAALVALCDI--VYSINDKVYLLYPFANLGLITEGGTTVSL------------------PLKF  169 (280)
T ss_dssp             HCCSEEEEEECSCEEHHHHHHHHHSSE--EEESSTTCEEECCHHHHTCCCCTTHHHHH------------------HHHH
T ss_pred             hCCCCEEEEECCeeeeHHHHHHHHCCE--EEEeCCCCEEeCchhhcCCCCCccHHHHH------------------HHHh
Confidence            457899999999999999999999998  9999 99998876655442   2222211                  1122


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       170 G--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~  201 (280)
T 1pjh_A          170 G--TNTTYECLMFNKPFKYDIMCENGFISKNFNM  201 (280)
T ss_dssp             C--HHHHHHHHHTTCCEEHHHHHHTTCCSEECCC
T ss_pred             C--HHHHHHHHHhCCCCCHHHHHHCCCcceeeCC
Confidence            2  2333445555677999999999999999865

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=98.08  E-value=6.2e-06  Score=61.10  Aligned_cols=90  Identities=17%  Similarity=0.064  Sum_probs=63.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+.|.|.+.|.-|+++||.  |++.++++|.+-...-|.....--.               ..+.+..|  .
T Consensus       105 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~vG--~  165 (264)
T 3he2_A          105 ASPMPVVGAINGPAIGAGLQLAMQCDL--RVVAPDAFFQFPTSKYGLALDNWSI---------------RRLSSLVG--H  165 (264)
T ss_dssp             HCSSCEEEEECSCEETHHHHHHHHSSE--EEECTTCEEECTHHHHTCCCCHHHH---------------HHHHHHHC--H
T ss_pred             hCCCCEEEEECCcEEcchhHHHHhCCE--EEEcCCCEEECcccccCcCCcchHH---------------HHHHHHhC--H
Confidence            468899999999999999999999998  9999999987655544432221100               01111112  2


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                      ..-.+++-....++++||+++||||+|.+
T Consensus       166 ~~A~~llltG~~i~A~eA~~~GLV~~v~~  194 (264)
T 3he2_A          166 GRARAMLLSAEKLTAEIALHTGMANRIGT  194 (264)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEECC
T ss_pred             HHHHHHHHcCCCccHHHHHHCCCeEEEec
Confidence            23334555567899999999999999964

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=98.07  E-value=5.2e-06  Score=63.28  Aligned_cols=87  Identities=8%  Similarity=0.033  Sum_probs=65.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG-AQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~-~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-....+ +-+..  +                 +.++.|  
T Consensus       155 ~~~kPvIAaV~G~a~GgG~~LalacD~--rias~~a~f~~pe~~lG~~P~~g--~-----------------l~~~vG--  211 (333)
T 3njd_A          155 HCDKPTVVKIHGYCVAGGTDIALHADQ--VIAAADAKIGYPPMRVWGVPAAG--L-----------------WAHRLG--  211 (333)
T ss_dssp             HSSSCEEEEECSEEETHHHHHHTTSSE--EEECTTCEEECGGGGTTCCCTTC--C-----------------HHHHHC--
T ss_pred             hCCCCEEEEECCEEeHHHHHHHHhCCE--EEECCCCeeechhhceeccCHHH--H-----------------HHHHHH--
Confidence            368899999999999999999999998  99999999887665532 21111  0                 111122  


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ...-.+++-....++++||+++||||+|+..
T Consensus       212 ~~~A~ellltG~~i~A~eA~~~GLV~~vv~~  242 (333)
T 3njd_A          212 DQRAKRLLFTGDCITGAQAAEWGLAVEAPDP  242 (333)
T ss_dssp             HHHHHHHHTTCCEEEHHHHHHTTSSSBCCCG
T ss_pred             HHHHHHHHhcCCCCCHHHHHHCCCccEecCh
Confidence            3444556667788999999999999999864

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=98.07  E-value=2.4e-06  Score=63.48  Aligned_cols=88  Identities=18%  Similarity=0.045  Sum_probs=63.2

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc-C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG-A--QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~-~--~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-.+.-| .  .|-..-+..                  ..|
T Consensus       107 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r------------------~vG  166 (275)
T 4eml_A          107 SMPKVVIALVAGYAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVGSFDGGFGSSYLAR------------------IVG  166 (275)
T ss_dssp             HSSSEEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHTCCCCSTTTHHHHH------------------HHC
T ss_pred             hCCCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEECcccccCCCCCccHHHHHHH------------------HhH
Confidence            468899999999999999999999998  99999999887555434 1  111222211                  111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       167 --~~~A~~llltg~~i~A~eA~~~GLv~~vv~~  197 (275)
T 4eml_A          167 --QKKAREIWYLCRQYSAQEAERMGMVNTVVPV  197 (275)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred             --HHHHHHHHHhCCCcCHHHHHHcCCccEeeCH
Confidence              1222344444566999999999999999875

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=98.07  E-value=8.3e-06  Score=62.38  Aligned_cols=88  Identities=15%  Similarity=0.038  Sum_probs=65.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEec-CCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSL-PNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~-p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++. ++++|.+-....|.   .|-..-|....-                 
T Consensus       165 ~~~kPvIAaV~G~A~GgG~~LalacD~--riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r~vG-----------------  225 (334)
T 3t8b_A          165 FMPKVVICLVNGWAAGGGHSLHVVCDL--TLASREYARFKQTDADVGSFDGGYGSAYLARQVG-----------------  225 (334)
T ss_dssp             HSSSEEEEEECSEEETHHHHHHHHSSE--EEEETTTCEEECCCTTCSSSSCCSCHHHHHHHHH-----------------
T ss_pred             hCCCCEEEEECCccccCcchhHhhCCE--EEEeCCCcEEECcccccCCCCcccHHHHHHHHhh-----------------
Confidence            468899999999999999999999998  9999 99999887776553   233333321111                 


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                         ...-.+++-....++++||+++||||+|++.
T Consensus       226 ---~~~A~ellltG~~i~A~eA~~~GLV~~vv~~  256 (334)
T 3t8b_A          226 ---QKFAREIFFLGRTYTAEQMHQMGAVNAVAEH  256 (334)
T ss_dssp             ---HHHHHHHHHHCCEEEHHHHHHHTSCSEEECG
T ss_pred             ---HHHHHHHHHhCCcCCHHHHHHCCCCcEecCH
Confidence               1112233334567999999999999999875

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=98.05  E-value=3.7e-06  Score=61.83  Aligned_cols=91  Identities=8%  Similarity=0.023  Sum_probs=64.0

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-....|..-..--               ...+.+..  ..
T Consensus        94 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~---------------~~~l~r~v--G~  154 (261)
T 1ef8_A           94 KFPKPIISMVEGSVWGGAFEMIMSSDL--IIAASTSTFSMTPVNLGVPYNLVG---------------IHNLTRDA--GF  154 (261)
T ss_dssp             HCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHTCCCCHHH---------------HHTTSSSS--CH
T ss_pred             hCCCCEEEEECCEEEeHhHHHHHhCCE--EEecCCCEEeCchhccCCCCCccH---------------HHHHHHHh--CH
Confidence            468899999999999999999999998  999999998765544343211000               00011112  23


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..-.+++-....++++||+++||||+|++.
T Consensus       155 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  184 (261)
T 1ef8_A          155 HIVKELIFTASPITAQRALAVGILNHVVEV  184 (261)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEEECH
T ss_pred             HHHHHHHHcCCccCHHHHHHCCCcccccCH
Confidence            344445545668999999999999999853

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=98.05  E-value=5e-06  Score=61.58  Aligned_cols=88  Identities=14%  Similarity=0.018  Sum_probs=64.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-CC-HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQ-ASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G~-~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.. +- ..-+       -           +..  
T Consensus        98 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~l-------~-----------r~v--  155 (267)
T 3hp0_A           98 TGPYVTISHVRGKVNAGGLGFVSATDI--AIADQTASFSLSELLFGLYPACVLPFL-------I-----------RRI--  155 (267)
T ss_dssp             HSSSEEEEEECSEEETTHHHHHHHSSE--EEECTTCEEECCGGGGTCCCTTTHHHH-------H-----------HHH--
T ss_pred             cCCCCEEEEECCEEeehHHHHHHhCCE--EEEcCCCEEECchhccCcCchhHHHHH-------H-----------HHh--
Confidence            468899999999999999999999998  9999999988766665532 11 1111       1           111  


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ....-.+++-....++++||+++||||+|+++
T Consensus       156 G~~~A~ellltg~~i~A~eA~~~GLV~~vv~~  187 (267)
T 3hp0_A          156 GRQKAHYMTLMTKPISVQEASEWGLIDAFDAE  187 (267)
T ss_dssp             CHHHHHHHHHHCCCBCHHHHHHHTSSSCBCSC
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHCCCcceecCC
Confidence            12233344445568999999999999999864

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=98.04  E-value=3.9e-06  Score=61.99  Aligned_cols=88  Identities=11%  Similarity=0.124  Sum_probs=62.9

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|...-+....                  |
T Consensus        98 ~~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v------------------G  157 (269)
T 1nzy_A           98 RVKRPVLAAINGVAAGGGLGISLASDM--AICADSAKFVCAWHTIGIGNDTATSYSLARIV------------------G  157 (269)
T ss_dssp             HCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHTCCCCTTHHHHHHHHH------------------H
T ss_pred             hCCCCEEEEECCeeecHHHHHHHhCCE--EEecCCCEEeCcccccCCCCCccHHHHHHHHh------------------h
Confidence            468899999999999999999999998  999999998876655442   22222221111                  1


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       158 --~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  188 (269)
T 1nzy_A          158 --MRRAMELMLTNRTLYPEEAKDWGLVSRVYPK  188 (269)
T ss_dssp             --HHHHHHHHHHCCCBCHHHHHHHTSCSCEECH
T ss_pred             --HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH
Confidence              1122233334566999999999999999864

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=98.02  E-value=9.7e-06  Score=61.06  Aligned_cols=88  Identities=16%  Similarity=0.092  Sum_probs=64.9

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      ++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-....|.   .|-..-+                  .+..  
T Consensus       139 ~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L------------------~r~v--  196 (305)
T 3m6n_A          139 ARAHSIALVQGNALGGGFEAALSCHT--IIAEEGVMMGLPEVLFDLFPGMGAYSFM------------------CQRI--  196 (305)
T ss_dssp             TTCEEEEEECSCEETHHHHHHHHSSE--EEEETTCEEECGGGGGTCCCCSSHHHHH------------------TTTS--
T ss_pred             CCCCEEEEECCEeehHHHHHHHhCCE--EEEcCCCEEECchhccCcCCCccHHHHH------------------HHHh--
Confidence            58899999999999999999999998  999999998876665443   2222111                  1111  


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      ....-.+++-....++++||+++||||+|++..
T Consensus       197 G~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~  229 (305)
T 3m6n_A          197 SAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRG  229 (305)
T ss_dssp             CHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTT
T ss_pred             cHHHHHHHHHcCCCCCHHHHHHCCCCCEecChh
Confidence            223334444455689999999999999998753

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=98.01  E-value=7.8e-06  Score=61.16  Aligned_cols=88  Identities=17%  Similarity=0.174  Sum_probs=64.6

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecC-CceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLP-NSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p-~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.+ +++|.+-...-|.   .|-..-+..                  ..
T Consensus       104 ~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r------------------~v  163 (287)
T 3gkb_A          104 HQPQVTIVKLAGKARGGGAEFVAAADM--AFAAAETAGLGQIEALMGIIPGGGGTQYLRG------------------RV  163 (287)
T ss_dssp             HCSSEEEEEECSEEETHHHHHHHHSSE--EEEETTTCEEECGGGGGTSCCCSSHHHHHHH------------------HH
T ss_pred             hCCCCEEEEECCeeehHHHHHHHHCCE--EEEeCCCcEEECcccccCCCCCchHHHHHHH------------------Hh
Confidence            468899999999999999999999998  99999 9998876666443   222222211                  11


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       164 G--~~~A~ellltG~~i~A~eA~~~GLV~~vv~~  195 (287)
T 3gkb_A          164 G--RNRALEVVLTADLFDAETAASYGWINRALPA  195 (287)
T ss_dssp             C--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECH
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHCCCCcEEeCh
Confidence            1  2222344445567999999999999999864

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=98.00  E-value=1e-05  Score=59.56  Aligned_cols=87  Identities=11%  Similarity=0.082  Sum_probs=62.3

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeee-ecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMI-HQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~mi-H~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+-|.|.+ |.-|+++||.  |++.++++|.. -...-|.   .|-..-                  +.+..
T Consensus       106 ~~~kPvIAav~G~a~G-G~~LalacD~--ria~~~a~f~~~pe~~lGl~p~~g~~~~------------------l~r~v  164 (257)
T 1szo_A          106 SIEVPVIAAVNGPVTN-APEIPVMSDI--VLAAESATFQDGPHFPSGIVPGDGAHVV------------------WPHVL  164 (257)
T ss_dssp             HCCSCEEEEECSCBCS-STHHHHTSSE--EEEETTCEEECTTSGGGTCCCTTTHHHH------------------HHHHH
T ss_pred             cCCCcEEEEECCchHH-HHHHHHHCCE--EEEeCCCEEecCcccccccCCCccHHHH------------------HHHHc
Confidence            4678999999999995 8999999998  99999999876 4444332   122111                  11122


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       165 G--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~  196 (257)
T 1szo_A          165 G--SNRGRYFLLTGQELDARTALDYGAVNEVLSE  196 (257)
T ss_dssp             C--HHHHHHHHHTTCEEEHHHHHHHTSCSEEECH
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence            2  2334455556678999999999999999863

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=98.00  E-value=6.7e-06  Score=61.55  Aligned_cols=87  Identities=20%  Similarity=0.108  Sum_probs=63.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc-C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG-A---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~-~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-.+..| .   .| ..-+..                  ..
T Consensus       121 ~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~~~~~g-~~~L~r------------------~v  179 (289)
T 3t89_A          121 TCPKPVVAMVAGYSIGGGHVLHMMCDL--TIAADNAIFGQTGPKVGSFDGGWG-ASYMAR------------------IV  179 (289)
T ss_dssp             HCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHTCCCCSTT-THHHHH------------------HH
T ss_pred             cCCCCEEEEECCEeehHHHHHHHhCCE--EEEeCCCEEeccccccCCCCCchH-HHHHHH------------------hc
Confidence            468899999999999999999999998  99999999987655544 2   22 222211                  11


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       180 G--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~  211 (289)
T 3t89_A          180 G--QKKAREIWFLCRQYDAKQALDMGLVNTVVPL  211 (289)
T ss_dssp             C--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG
T ss_pred             C--HHHHHHHHHcCCcccHHHHHHCCCceEeeCH
Confidence            1  2223333334456999999999999999875

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=97.97  E-value=8.5e-06  Score=62.77  Aligned_cols=87  Identities=10%  Similarity=0.004  Sum_probs=64.9

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-....|..   |-..-+                  .+..|
T Consensus       100 ~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L------------------~r~~g  159 (363)
T 3bpt_A          100 SCQKPYVALIHGITMGGGVGLSVHGQF--RVATEKCLFAMPETAIGLFPDVGGGYFL------------------PRLQG  159 (363)
T ss_dssp             TCSSCEEEEECSEEETHHHHTTTTSSE--EEECTTCEEECCGGGTTSCCCTTHHHHH------------------HHSST
T ss_pred             hCCCCEEEEECCEEehHHHHHHHhCCE--EEEcCCeEEeCCccccCCCCCchHHHHH------------------HHhhH
Confidence            468899999999999999999999998  9999999998877665532   222222                  11122


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .   .-.+++-....++++||+++||||+|++.
T Consensus       160 ~---~a~~l~ltg~~i~A~eA~~~GLv~~vv~~  189 (363)
T 3bpt_A          160 K---LGYFLALTGFRLKGRDVYRAGIATHFVDS  189 (363)
T ss_dssp             T---HHHHHHHHCCCEETHHHHHTTSCSEECCG
T ss_pred             H---HHHHHHHcCCCCCHHHHHHCCCcceecCH
Confidence            1   22334445577999999999999999865

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=97.96  E-value=7e-06  Score=63.06  Aligned_cols=81  Identities=23%  Similarity=0.180  Sum_probs=56.0

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      ..+.|+.+++.|.|.|.|+.++++|+.  ++|.|++.+.+=.|.+.    ++-+                  -... ...
T Consensus       210 ~~~vPvIavV~G~a~GGGa~~~~~~D~--via~p~A~~~v~~Peg~----asil------------------~~~~-~~~  264 (339)
T 2f9y_A          210 RLGVPVVCTVIGEGGSGGALAIGVGDK--VNMLQYSTYSVISPEGC----ASIL------------------WKSA-DKA  264 (339)
T ss_dssp             TCSSCEEEEEEEEEEHHHHHTTCCCSE--EEECTTCEEESSCHHHH----HHHH------------------SSCS-TTH
T ss_pred             hCCCCEEEEEeCCcCcHHHHHHhccCe--eeecCCCEEEeeccchH----HHHH------------------HHhh-ccH
Confidence            357899999999999999999999987  99999999886333221    0000                  0000 000


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .+..+.    ..+||++|+++|+||+|++.
T Consensus       265 ~~Aae~----~~itA~~a~~~GlVd~VV~e  290 (339)
T 2f9y_A          265 PLAAEA----MGIIRPRLKELKLIDSIIPE  290 (339)
T ss_dssp             HHHHHH----HTCSHHHHHTTTSCSCCCCC
T ss_pred             HHHHHH----cCCCHHHHHHcCCeeEEecC
Confidence            111122    56999999999999999973

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=97.96  E-value=7.1e-06  Score=61.43  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=64.0

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCC-ceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPN-SRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEK   77 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~-s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~   77 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||-  |++.++ ++|.+-...-|.   .|-..-+..                  .
T Consensus       100 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r------------------~  159 (289)
T 3h0u_A          100 SQLPAVTIAKLRGRARGAGSEFLLACDM--RFASRENAILGQPEVGIGAPPGAGAIQHLTR------------------L  159 (289)
T ss_dssp             HTCSSEEEEEECSEEETHHHHHHHHSSE--EEEETTTCEEECTHHHHTSCCCSSHHHHHHH------------------H
T ss_pred             HhCCCCEEEEECCEeehhhHHHHHhCCE--EEEeCCCcEEeCchhhcCCCCCccHHHHHHH------------------H
Confidence            3568899999999999999999999998  999998 988876555442   222222211                  1


Q ss_pred             hCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .|  ...-.+++-....++++||+++||||+|++.
T Consensus       160 vG--~~~A~ellltG~~i~A~eA~~~GLV~~vv~~  192 (289)
T 3h0u_A          160 LG--RGRALEAVLTSSDFDADLAERYGWVNRAVPD  192 (289)
T ss_dssp             HC--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECH
T ss_pred             hC--HHHHHHHHHcCCCCCHHHHHHCCCccEecCH
Confidence            11  2223344444566999999999999999864

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.95  E-value=9.4e-06  Score=62.05  Aligned_cols=80  Identities=23%  Similarity=0.231  Sum_probs=55.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      ..+.|+.+++.|.|.|.|+.++++|+.  ++|.|++.+.+=.|.+.    +.-+....   ...                
T Consensus       196 ~~~vPvIavV~G~a~GGGa~~~~~~D~--via~~~A~~~v~~peg~----a~il~~~~---~~a----------------  250 (327)
T 2f9i_A          196 SLKVPVIAIVIGEGGSGGALGIGIANK--VLMLENSTYSVISPEGA----AALLWKDS---NLA----------------  250 (327)
T ss_dssp             TCSSCEEEEEEEEEBHHHHHTTCCCSE--EEEETTCBCBSSCHHHH----HHHHSSCG---GGH----------------
T ss_pred             hCCCCEEEEEECCcChHHHHHHHCCCE--EEEcCCceEeecCchHH----HHHHHHHh---cch----------------
Confidence            357899999999999999999999988  99999999886433321    00000000   000                


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILK  111 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~  111 (114)
                      .+..+.    .++||++|+++|+||+|++
T Consensus       251 ~~A~e~----~~itA~~a~~~GlVd~VV~  275 (327)
T 2f9i_A          251 KIAAET----MKITAHDIKQLGIIDDVIS  275 (327)
T ss_dssp             HHHHHH----HTCBHHHHHHTTSSSEEEC
T ss_pred             HHHHHH----cCCCHHHHHHcCCceEEec
Confidence            011111    5699999999999999997

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=97.94  E-value=7e-06  Score=61.04  Aligned_cols=86  Identities=17%  Similarity=0.100  Sum_probs=63.6

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|...-+                  .+.. 
T Consensus       120 ~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L------------------~r~v-  178 (276)
T 3rrv_A          120 RCRIPVVAAVNGPAVGLGCSLVALSDI--VYIAENAYLADPHVQVGLVAADGGPLTW------------------PLHI-  178 (276)
T ss_dssp             HCSSCEEEEECSCEETHHHHHHHTSSE--EEEETTCEEECCHHHHTCCCCSSHHHHG------------------GGTS-
T ss_pred             hCCCCEEEEECceeeHHHHHHHHHCCE--EEEeCCCEEECchhccCcCCCccHHHHH------------------HHHh-
Confidence            468899999999999999999999998  999999998765544332   2222111                  1111 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeec
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKIL  110 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii  110 (114)
                       ....-.+++-....++++||+++||||+|+
T Consensus       179 -G~~~A~ellltG~~i~A~eA~~~GLv~~vv  208 (276)
T 3rrv_A          179 -SLLLAKEYALTGTRISAQRAVELGLANHVA  208 (276)
T ss_dssp             -CHHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             -CHHHHHHHHHcCCCCCHHHHHHcCCHHHHH
Confidence             233444555566789999999999999997

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=97.94  E-value=9.5e-06  Score=59.81  Aligned_cols=84  Identities=18%  Similarity=0.043  Sum_probs=63.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|..   |...-                  +. +  
T Consensus       106 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~-~--  162 (267)
T 3oc7_A          106 ESRLPVIAAIDGHVRAGGFGLVGACDI--AVAGPRSSFALTEARIGVAPAIISLTL------------------LP-K--  162 (267)
T ss_dssp             HCSSCEEEEECSEEETTHHHHHHHSSE--EEECTTCEEECCGGGGTCCCTTTHHHH------------------TT-T--
T ss_pred             hCCCCEEEEEcCeecccchHHHHHCCE--EEEcCCCEEeCcccccCCCcchhHHHH------------------HH-H--
Confidence            468899999999999999999999998  9999999988766554432   22111                  11 1  


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceee
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKI  109 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~I  109 (114)
                      .....-.+++-....++++||+++||||+|
T Consensus       163 vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  192 (267)
T 3oc7_A          163 LSARAAARYYLTGEKFDARRAEEIGLITMA  192 (267)
T ss_dssp             SCHHHHHHHHHHCCCBCHHHHHHHTSSSEE
T ss_pred             hCHHHHHHHHHcCCccCHHHHHHCCChhhh
Confidence            233344555555678999999999999999

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=97.91  E-value=1.4e-05  Score=61.51  Aligned_cols=88  Identities=13%  Similarity=0.032  Sum_probs=62.8

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|...-+..       +           -|
T Consensus       103 ~~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~iGl~p~~g~~~~l~r-------l-----------~g  162 (353)
T 4hdt_A          103 RYPKPYVSIMDGIVMGGGVGVGAHGNV--RVVTDTTKMAMPEVGIGFIPDVGGTYLLSR-------A-----------PG  162 (353)
T ss_dssp             HCSSCEEEEECBEEETHHHHHHTTSSE--EEECTTCEEECCGGGGTCCCCTTHHHHHHT-------S-----------ST
T ss_pred             HCCCCEEEEeECceeecCccccCCcCe--eccchhccccCcccccccCCCccceehhhh-------h-----------hh
Confidence            468899999999999999999999998  999999999876655443   222221111       0           11


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                       .  .-.+++-....++++||+++||||+|+...
T Consensus       163 -~--~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~  193 (353)
T 4hdt_A          163 -K--LGLHAALTGAPFSGADAIVMGFADHYVPHD  193 (353)
T ss_dssp             -T--HHHHHHHHCCCBCHHHHHHHTSCSEECCGG
T ss_pred             -H--HHHHHHhcCCCCCHHHHHHcCCCcEEeCHH
Confidence             0  112222234579999999999999998753

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=97.89  E-value=4.9e-06  Score=61.90  Aligned_cols=89  Identities=10%  Similarity=0.005  Sum_probs=63.1

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV   82 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~   82 (114)
                      .++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|..|...-..  ..               ..  ..
T Consensus       115 ~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~~~~~~~~--~~---------------~v--G~  173 (279)
T 3t3w_A          115 NVPKPSIAAVQGRCISGGLLLCWPCDL--IIAAEDALFSDPVVLMDIGGVEYHGH--TW---------------EL--GP  173 (279)
T ss_dssp             HCSSCEEEEECSEEEGGGHHHHTTSSE--EEEETTCEEECCGGGGTCSSCSSCCH--HH---------------HH--CH
T ss_pred             hCCCCEEEEECCeEhHHHHHHHHhCCE--EEecCCCEEeCcHHhcCCCCchHHHH--Hh---------------hc--CH
Confidence            468899999999999999999999998  99999999877655544322100000  00               01  12


Q ss_pred             HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ..-.+++-....++++||+++||||+|++.
T Consensus       174 ~~A~~llltG~~i~A~eA~~~GLv~~vv~~  203 (279)
T 3t3w_A          174 RKAKEILFTGRAMTAEEVAQTGMVNRVVPR  203 (279)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred             HHHHHHHHcCCccCHHHHHHCCCCcEeeCh
Confidence            222344444568999999999999999865

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=97.85  E-value=1.9e-05  Score=62.56  Aligned_cols=89  Identities=18%  Similarity=0.119  Sum_probs=63.9

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      .++.||.+.+.|.|.+.|.-|+++||.  |++.++++|.+-....|.. +-...      .|-+.           .|  
T Consensus       282 ~~pkPvIAAVnG~A~GGG~eLALaCDi--rIAae~A~Fglpev~lGl~P~~g~~------~L~rl-----------vG--  340 (440)
T 2np9_A          282 RIEKPWVAAVDGFAIGGGAQLLLVFDR--VLASSDAYFSLPAAKEGIIPGAANL------RLGRF-----------AG--  340 (440)
T ss_dssp             EECCCEEEEECSEEETHHHHHGGGCSE--EEEETTCEEECCCTTTCCCCTTHHH------HHHHH-----------HH--
T ss_pred             cCCCCEEEEECCcccccchHHHhhCCE--EEEcCCCEEECchhccCcCcchHHH------HHHHH-----------hh--
Confidence            468899999999999999999999998  9999999998877765532 22111      11111           11  


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ...-.+++-....++++||+++||||+|++.
T Consensus       341 ~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~  371 (440)
T 2np9_A          341 PRVSRQVILEGRRIWAKEPEARLLVDEVVEP  371 (440)
T ss_dssp             HHHHHHHHHHCCCEETTSGGGGGTCSEEECH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCcEecCh
Confidence            1122233334467999999999999999864

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=97.75  E-value=1.7e-05  Score=62.18  Aligned_cols=87  Identities=21%  Similarity=0.088  Sum_probs=64.7

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|..   |-..-+                  .+..|
T Consensus       140 ~~~kPvIAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~P~~G~t~~L------------------~rl~g  199 (407)
T 3ju1_A          140 TYGKPVLVWGDGIVMGGGLGLMAGASH--KVVTETSRIAMPEVTIGLYPDVGGSYFL------------------NRMPG  199 (407)
T ss_dssp             TCSSCEEEECCSEEETHHHHHHHHCSE--EEECTTCEEECGGGGGTCCSCTTHHHHT------------------TTSST
T ss_pred             HCCCCEEEEECCccccCcchHHhcCCE--EEEcCCCEEeChHhhcCCCCCchHHHHH------------------hhhhH
Confidence            468899999999999999999999998  9999999998766655532   222111                  11112


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                         ..-.+++-....++++||+++||||+|+..
T Consensus       200 ---~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~  229 (407)
T 3ju1_A          200 ---KMGLFLGLTAYHMNAADACYVGLADHYLNR  229 (407)
T ss_dssp             ---THHHHHHHHCCCBCHHHHHHHTSCSEECCG
T ss_pred             ---HHHHHHHHcCCcCcHHHHHHCCCccEEcCH
Confidence               223344445577999999999999999875

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=97.72  E-value=7.3e-05  Score=62.25  Aligned_cols=89  Identities=18%  Similarity=0.151  Sum_probs=64.6

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|-...+...                  .
T Consensus        99 ~~~~kPvIAav~G~a~GgG~elalacD~--ria~~~a~fglpev~lGl~P~~Ggt~~L~rl------------------v  158 (725)
T 2wtb_A           99 EAARKPSVAAIDGLALGGGLELAMACHA--RISAPAAQLGLPELQLGVIPGFGGTQRLPRL------------------V  158 (725)
T ss_dssp             CTSSSCEEEEECSEEETHHHHHHHHSSE--EEECTTCEEECCGGGGTCCCCSSHHHHHHHH------------------H
T ss_pred             HhCcCcEEEEECCccCcccHHHHHhCCE--EEEcCCCEEeCchhccCCCCCccHHHHHHHh------------------c
Confidence            4568899999999999999999999998  999999997776555443   2322222111                  1


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       159 G--~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~  190 (725)
T 2wtb_A          159 G--LTKALEMILTSKPVKAEEGHSLGLIDAVVPP  190 (725)
T ss_dssp             C--HHHHHHHHHHCCCEEHHHHHHHTSCSEECCT
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHCCccceEcCh
Confidence            1  2222334444568999999999999999864

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=97.72  E-value=1.8e-05  Score=58.54  Aligned_cols=87  Identities=15%  Similarity=0.065  Sum_probs=60.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeee-ecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMI-HQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~mi-H~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+-|.|. .|.-|+++||.  |++.++++|.. -...-|.   .|-..-+..          .        .
T Consensus       115 ~~~kPvIAav~G~a~-GG~~LalacD~--ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r----------~--------v  173 (263)
T 2j5g_A          115 DIEVPVISAVNGAAL-LHSEYILTTDI--ILASENTVFQDMPHLNAGIVPGDGVHILWPL----------A--------L  173 (263)
T ss_dssp             TCCSCEEEEECSEEC-SCGGGGGGCSE--EEEETTCEECCCHHHHHTCCCCSSHHHHHHH----------H--------H
T ss_pred             hCCCCEEEEECCcch-HHHHHHHhCCE--EEEcCCCEEecCcccccccCCCccHHHHHHH----------H--------c
Confidence            468899999999999 48889999998  99999999876 3333232   222222211          1        1


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       174 G--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~  205 (263)
T 2j5g_A          174 G--LYRGRYFLFTQEKLTAQQAYELNVVHEVLPQ  205 (263)
T ss_dssp             H--HHHHHHHHHTTCCEEHHHHHHTTSCSEEECG
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHCCCccEecCh
Confidence            1  1223344445667999999999999999864

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=97.71  E-value=4.9e-05  Score=63.19  Aligned_cols=89  Identities=13%  Similarity=0.091  Sum_probs=65.2

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||.  |++.++++|.+-...-|.   .|-..-+..                  ..
T Consensus       100 ~~~~kPvIAav~G~a~GgG~elalacD~--ria~~~a~fglpev~lGl~P~~ggt~~L~r------------------~v  159 (715)
T 1wdk_A          100 EDLNVPTVAAINGIALGGGLEMCLAADF--RVMADSAKIGLPEVKLGIYPGFGGTVRLPR------------------LI  159 (715)
T ss_dssp             HTCSSCEEEEECSCEETHHHHHHHTSSE--EEEETTCEEECGGGGGTCCCCSSHHHHHHH------------------HH
T ss_pred             HhCCCCEEEEECCEeeHHHHHHHHHCCE--EEEeCCCEEeChhhccCCCCCccHHHHHHH------------------Hh
Confidence            3568899999999999999999999998  999999998776665553   232222211                  11


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      |  ...-.+++-....++++||+++||||+|++.
T Consensus       160 G--~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~  191 (715)
T 1wdk_A          160 G--VDNAVEWIASGKENRAEDALKVSAVDAVVTA  191 (715)
T ss_dssp             C--HHHHHHHHHHCCCEEHHHHHHTTSSSEEECG
T ss_pred             C--HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence            1  2223344445568999999999999999864

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=97.54  E-value=0.00011  Score=59.59  Aligned_cols=91  Identities=13%  Similarity=0.116  Sum_probs=66.5

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCC--ceeeeecCC-ccC---CCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPN--SRIMIHQPL-GGA---QGQASDIEIQAREILYLRQRLNEILS   75 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~--s~~miH~p~-~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya   75 (114)
                      ..++.||.+.+-|.|.+.|.-|+++||.  |++.++  ++|.+-... -|.   .|-..-+                  .
T Consensus       126 ~~~pKPVIAAVnG~AlGGGleLALACD~--rIAse~~~A~FglPEv~~LGL~Pg~Ggt~rL------------------p  185 (556)
T 2w3p_A          126 RHSGLKFLAAVNGACAGGGYELALACDE--IYLVDDRSSSVSLPEVPLLGVLPGTGGLTRV------------------T  185 (556)
T ss_dssp             HHTSCEEEEEECSEEETHHHHHHHHSSE--EEEECSSSCEEECCHHHHHSSCCTTTHHHHH------------------H
T ss_pred             hcCCCCEEEEECCeechhhHHHHHhCCE--EEEcCCCCcEEecccccccCCCCCccHHHHH------------------H
Confidence            3568899999999999999999999998  999999  888775544 332   2222222                  1


Q ss_pred             HHhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          76 EKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        76 ~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .+--.....-.+++-....++++||+++||||+|++.
T Consensus       186 ~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~  222 (556)
T 2w3p_A          186 DKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKP  222 (556)
T ss_dssp             HTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECH
T ss_pred             hhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence            0011234555566667778999999999999999863

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.48  E-value=0.00021  Score=59.84  Aligned_cols=88  Identities=17%  Similarity=0.149  Sum_probs=64.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|.-|+++||-  |++.++++|.+-...-|.   .|-..-|..                  ..|
T Consensus       104 ~~~kPvIAai~G~a~GGG~elalacD~--ria~~~a~fg~pev~lGl~Pg~ggt~rL~r------------------lvG  163 (742)
T 3zwc_A          104 RYQKPVLAAIQGVALGGGLELALGCHY--RIANAKARVGLPEVTLGILPGARGTQLLPR------------------VVG  163 (742)
T ss_dssp             HCSSCEEEEECSEEETHHHHHHHTSSE--EEEETTCEEECGGGGGTCCCTTTHHHHHHH------------------HHC
T ss_pred             hCCCCEEEEECccchHHHHHHHHhcCE--EEEcCCCEEECcccCcccCCCccHHHHHHH------------------hhh
Confidence            467899999999999999999999998  999999998776555442   222222211                  111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ...-.+++-....++++||+++||||+|++.
T Consensus       164 --~~~A~~l~ltG~~i~a~eA~~~GLv~~vv~~  194 (742)
T 3zwc_A          164 --VPVALDLITSGKYLSADEALRLGILDAVVKS  194 (742)
T ss_dssp             --HHHHHHHHHHCCCEEHHHHHHHTSCSEEESS
T ss_pred             --HHHHHHHHHcCCchhHHHHHHcCCccEecCc
Confidence              2222344445678999999999999999865

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.09  E-value=0.00072  Score=54.86  Aligned_cols=92  Identities=15%  Similarity=0.181  Sum_probs=58.8

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhc----CCCCcEEecCCceeeeecCCcc---CCCC-HHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLAS----GTKGKRFSLPNSRIMIHQPLGG---AQGQ-ASDIEIQAREILYLRQRLNEILS   75 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~a----g~~~~R~~~p~s~~miH~p~~~---~~G~-~~~l~~~~~~l~~~~~~~~~~ya   75 (114)
                      .+.|+.|+++|.++|.|.+.+++    ++.  .++.|++.+.+-.|.+.   .+.. ....+..-++....++.+.+.|.
T Consensus       419 ~~VP~isvI~g~~~Ggg~~am~~~~~~~d~--~~awp~a~i~Vmgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~y~  496 (548)
T 2bzr_A          419 ATVPKITVITRKAYGGAYCVMGSKDMGCDV--NLAWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYE  496 (548)
T ss_dssp             CCSCEEEEEEEEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTCCC----------CHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCcchHHHHHhccccCCCCE--EEEcCCCEEEecCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHHHHH
Confidence            46799999999999999888865    444  89999999999988743   1222 11110000122223333333343


Q ss_pred             HHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          76 EKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        76 ~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      +                .+.+|..+.+.|+||.||+++
T Consensus       497 ~----------------~~~~p~~~a~~g~iD~II~p~  518 (548)
T 2bzr_A          497 D----------------TLVNPYVAAERGYVGAVIPPS  518 (548)
T ss_dssp             H----------------HHSBSHHHHHTTSSSEECCGG
T ss_pred             H----------------hhCCHHHHHhcCCCceeeCHH
Confidence            2                345778899999999999864

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.89  E-value=0.00084  Score=54.22  Aligned_cols=91  Identities=19%  Similarity=0.196  Sum_probs=56.4

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhc----CCCCcEEecCCceeeeecCCccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLAS----GTKGKRFSLPNSRIMIHQPLGGA-QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~a----g~~~~R~~~p~s~~miH~p~~~~-~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .+.|+.++++|.++|.|.+.+++    ++.  .++.|+|.+-+=.|.+.. .-...+++. +++-...++.+.+.|.   
T Consensus       402 ~~vP~isvI~g~~~gGg~~am~~~~~~~d~--~~a~p~a~~~Vm~pegaa~Il~r~~~~~-~~d~~~~~~~~~~~y~---  475 (527)
T 1vrg_A          402 ATVPKITVILRKAYGGAYIAMGSKHLGADM--VLAWPSAEIAVMGPEGAANIIFKREIEA-SSNPEETRRKLIEEYK---  475 (527)
T ss_dssp             CCSCEEEEEEEEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTHHHHHH-SSCHHHHHHHHHHHHH---
T ss_pred             CCCCEEEEEeCCcccHHHHHhcCCCCCCCE--EEEcCCCeEEecCHHHHHHHHhhhhhhc-ccCHHHHHHHHHHHHH---
Confidence            46799999999999998887765    554  889999888776665321 001111110 0011112222223332   


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                                   +.+.+|..+.+.|+||+||+++
T Consensus       476 -------------~~~~~p~~~~~~g~iD~II~p~  497 (527)
T 1vrg_A          476 -------------QQFANPYIAASRGYVDMVIDPR  497 (527)
T ss_dssp             -------------HHTSSHHHHHHTTSSSEECCGG
T ss_pred             -------------HhhCCHHHHHHcCCCCeeeCHH
Confidence                         3346888999999999999864

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.82  E-value=0.00083  Score=54.22  Aligned_cols=91  Identities=14%  Similarity=0.142  Sum_probs=56.8

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhc----CCCCcEEecCCceeeeecCCccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLAS----GTKGKRFSLPNSRIMIHQPLGGA-QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~a----g~~~~R~~~p~s~~miH~p~~~~-~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .+.|+.|+++|.++|.|.+.+++    ++.  .++.|++.+-+=.|.+.. .-...+++. +++....++.+.+.|.   
T Consensus       398 ~~vP~itvI~g~~~Ggg~~am~~~~~~~d~--~~a~p~a~~~Vm~pegaa~Il~r~~~~~-~~d~~~~~~~~~~~y~---  471 (523)
T 1on3_A          398 ATVPKITVVLRKAYGGSYLAMCNRDLGADA--VYAWPSAEIAVMGAEGAANVIFRKEIKA-ADDPDAMRAEKIEEYQ---  471 (523)
T ss_dssp             CCSCEEEEEEEEEEHHHHHTTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTHHHHHH-SSCHHHHHHHHHHHHH---
T ss_pred             CCCCEEEEEeCCcccHHHHHhcccCCCCCE--EEEcCCCeEEecCHHHHHHHHhhhhhhc-ccCHHHHHHHHHHHHH---
Confidence            46799999999999998887766    444  889999888776665321 001111111 0111122222233332   


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                                   +.+.+|..+.+.|+||+||+++
T Consensus       472 -------------~~~~~p~~~a~~g~iD~II~p~  493 (523)
T 1on3_A          472 -------------NAFNTPYVAAARGQVDDVIDPA  493 (523)
T ss_dssp             -------------HHHSSHHHHHHTTSSSEECCGG
T ss_pred             -------------HhhCCHHHHHhcCCCCEeeCHH
Confidence                         2346788899999999999864

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=96.61  E-value=0.002  Score=48.57  Aligned_cols=72  Identities=13%  Similarity=0.094  Sum_probs=52.7

Q ss_pred             CCCeEEEEehhhhhHHHHH-HhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q psy5228           5 KPNVSTLCIGLAASMGAFL-LASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVK   83 (114)
Q Consensus         5 ~~~V~t~~~G~aaS~as~i-~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~   83 (114)
                      +.|+.+++.|-|++.|+.. .++|+.  +++.|+|++.+--|+.                          +.+.+|..  
T Consensus       191 ~vP~IavV~G~~~GGg~a~~a~~~D~--via~~~A~i~v~Gp~~--------------------------i~~~ig~~--  240 (304)
T 2f9y_B          191 GLPYISVLTDPTMGGVSASFAMLGDL--NIAEPKALIGFAGPRV--------------------------IEQTVREK--  240 (304)
T ss_dssp             TCCEEEEEEEEEEHHHHTTGGGCCSE--EEECTTCBEESSCHHH--------------------------HHHHHTSC--
T ss_pred             CCCEEEEEECCCccHHHHHHHhcCCE--EEEeCCcEEEeecHHH--------------------------HHHHhCcc--
Confidence            6899999999999998665 567887  9999999887753321                          12222321  


Q ss_pred             HHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          84 KISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        84 ~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                           +. +.+.+++++.+.|+||.|++.
T Consensus       241 -----l~-~~~~~Ae~~~~~Glvd~Vv~~  263 (304)
T 2f9y_B          241 -----LP-PGFQRSEFLIEKGAIDMIVRR  263 (304)
T ss_dssp             -----CC-TTTTBHHHHGGGTCCSEECCH
T ss_pred             -----CC-cccCCHHHHHhcCCccEEeCc
Confidence                 22 345699999999999999864

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=96.34  E-value=0.0059  Score=49.93  Aligned_cols=91  Identities=13%  Similarity=0.131  Sum_probs=54.5

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhc----C--CCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLAS----G--TKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEK   77 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~a----g--~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~   77 (114)
                      .+.|+.|+++|-+.|.|.+.+++    +  +.  .++.|++.+.+=.|.+..     .+. ..+++...         ++
T Consensus       443 a~vP~itvI~g~~~Ggg~~am~~~~~~~~~d~--~~a~p~A~~~Vm~pegaa-----~Il-~r~~~~~~---------~~  505 (587)
T 1pix_A          443 SHIPQFEITLRKGTAAAHYVLGGPQGNDTNAF--SIGTAATEIAVMNGETAA-----TAM-YSRRLAKD---------RK  505 (587)
T ss_dssp             CCCCEEEEECSEEETTHHHHTTCTTCTTTEEE--EEECTTCEEESSCHHHHH-----HHH-HHHHHHHH---------HH
T ss_pred             CCCCEEEEEcCCCccHHHHHhcCcccCcccce--eeeccCCeEecCCHHHHH-----HHH-Hhhhhhhh---------hh
Confidence            46799999999999998877765    3  33  788888888766554311     110 00111110         11


Q ss_pred             hCCCHHHHH-------hhhcCCceecHHHHHHcCcceeecccC
Q psy5228          78 TGHSVKKIS-------QDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        78 tg~s~~~i~-------~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      .|.+.++..       +...+  ..+|..|.+.|+||.||++.
T Consensus       506 ~g~~~~~~~~~~~~~~~~y~~--~~~p~~aa~~g~iD~VI~p~  546 (587)
T 1pix_A          506 AGKDLQPTIDKMNNLIQAFYT--KSRPKVCAELGLVDEIVDMN  546 (587)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHH--TTSHHHHHHHTSSSEECCTT
T ss_pred             cCCChHHHHHHHHHHHHHHHH--hCCHHHHHhcCCCccccCHH
Confidence            122221111       11112  47999999999999999865

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=96.06  E-value=0.0012  Score=53.46  Aligned_cols=91  Identities=13%  Similarity=0.140  Sum_probs=55.4

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcC---CCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASG---TKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEK   77 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag---~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~   77 (114)
                      .+.|+.|+++|.+.|.|.+. +++   .....++.|++.+-+=.|.+.   .+.+  +++...++-...++.+.+-|.+.
T Consensus       404 a~vP~itvI~g~~~GGa~~a-m~~~~~~~d~~~awp~a~~~Vm~~egaa~il~r~--~~~~~~~d~~~~~~~~~~~y~~~  480 (530)
T 3iav_A          404 ATVPLITVITRKAFGGAYVV-MGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRR--TIADAGDDAEATRARLIQEYEDA  480 (530)
T ss_dssp             CCSCEEEEEEEEEEHHHHHH-TTCGGGTCSEEEECTTCEEESSCHHHHHHHHTST--TTSTTCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCcchHHHHH-hcCCCCCCCEEEEcCCceEecCCHHHHHHHHhhh--hhhhcccCHHHHHHHHHHHHHHh
Confidence            46799999999999955544 443   123489999998887777532   1111  11000011122333344444332


Q ss_pred             hCCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                                      ..+|..|.+.|+||.||+++
T Consensus       481 ----------------~~~p~~aa~~~~vD~VIdP~  500 (530)
T 3iav_A          481 ----------------LLNPYTAAERGYVDAVIMPS  500 (530)
T ss_dssp             ----------------HSSSHHHHHTTSSSEECCGG
T ss_pred             ----------------cCCHHHHHhcCCCCcccCHH
Confidence                            34788999999999999875

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=95.14  E-value=0.012  Score=47.61  Aligned_cols=85  Identities=14%  Similarity=0.192  Sum_probs=55.5

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhc----CCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLAS----GTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSE   76 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~a----g~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~   76 (114)
                      .+.|+.|+++|.+.|.|.+.+++    ++.  .++.|++.+-+=.|.+.   .+.+  ++.. .+   . .+...+-|.+
T Consensus       410 a~VP~itvI~g~~~Ggg~~am~~~~~~~d~--~~awp~A~i~Vm~pegaa~Il~r~--~~~~-~~---~-~~~~~~~y~~  480 (531)
T 3n6r_B          410 ATVPMVTVITRKAYGGAYVVMSSKHLRADF--NYAWPTAEVAVMGAKGATEIIHRG--DLGD-PE---K-IAQHTADYEE  480 (531)
T ss_dssp             CCSCEEEEEEEEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHCCT--TTTS-TT---H-HHHHHHHHHH
T ss_pred             CCCCEEEEEcCCccchhhhhccCccCCCCe--EEEcCCceEecCCHHHHHHHHhcc--cccc-hh---H-HHHHHHHHHH
Confidence            46899999999999999888775    554  89999998887777532   1111  1111 00   0 1122222322


Q ss_pred             HhCCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          77 KTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        77 ~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                                      ...+|..|.+.|+||.||+++
T Consensus       481 ----------------~~~~p~~aa~~~~vD~vIdP~  501 (531)
T 3n6r_B          481 ----------------RFANPFVASERGFVDEVIQPR  501 (531)
T ss_dssp             ----------------HHSSSHHHHHHTSSSEECCGG
T ss_pred             ----------------HhcCHHHHHhcCccCcccCHH
Confidence                            235677899999999999975

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=95.12  E-value=0.00072  Score=54.55  Aligned_cols=89  Identities=13%  Similarity=0.141  Sum_probs=57.2

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhc----CCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLAS----GTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSE   76 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~a----g~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~   76 (114)
                      .+.|+.++++|-++|.|.+.+++    ++.  .+|.|+|.+-+=.|.+.   .+...  ++. +++....++.+.+.|. 
T Consensus       397 ~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~--v~a~p~A~i~v~gpegaa~Il~r~~--i~~-~~d~~~~~~~l~~~y~-  470 (522)
T 1x0u_A          397 ATVPKITVIVRKSYGGAHIAMSIKSLGADL--VYAWPTAEIAVTGPEGAVRILYRKE--IQQ-ASNPDDVLKQRIAEYR-  470 (522)
T ss_dssp             CCSCEEEEEEEEEEHHHHHHTCCGGGTCSE--EEECTTCEEESSCHHHHHHHHTSSS--SSS-SSSSSSSSHHHHHHHH-
T ss_pred             CCCCEEEEEeCCcccHHHHHhcccccCCCE--EEEeCCCEEEecCHHHHHHHHhhhh--hhc-ccCHHHHHHHHHHHHH-
Confidence            35799999999999999988877    776  89999999988888631   11110  000 0000011112222232 


Q ss_pred             HhCCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          77 KTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        77 ~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                                     +.+-+|+.+.+.|+||.||+++
T Consensus       471 ---------------~~~~~~~~~~~~G~iD~II~p~  492 (522)
T 1x0u_A          471 ---------------KLFANPYWAAEKGLVDDVIEPK  492 (522)
T ss_dssp             ---------------HHHSSSHHHHHTTSSSEECCGG
T ss_pred             ---------------HhcCCHHHHHhcCCCcEeECHH
Confidence                           2345778899999999999864

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=95.07  E-value=0.023  Score=46.23  Aligned_cols=41  Identities=20%  Similarity=0.174  Sum_probs=31.5

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhc----CCCCcEEecCCceeeeecCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLAS----GTKGKRFSLPNSRIMIHQPL   46 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~a----g~~~~R~~~p~s~~miH~p~   46 (114)
                      .+.|+.|+++|-+.+.|.+.+++    ++.  .++.|++.+-+=.|.
T Consensus       424 a~vP~itvi~g~~~Ggg~~am~~~~~~~d~--~~a~p~A~i~Vmgpe  468 (555)
T 3u9r_B          424 ARVPKFTVLIGGSFGAGNYGMCGRAYDPRF--LWMWPNARIGVMGGE  468 (555)
T ss_dssp             CCSCEEEEEEEEEETTHHHHTTCGGGCCSE--EEECTTCEEESSCHH
T ss_pred             CCCCEEEEEeCCccchhhHhhcCccCCCCe--EEEcCCcEEEcCCHH
Confidence            46799999999999998887763    343  788888887765553

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=94.18  E-value=0.05  Score=44.48  Aligned_cols=97  Identities=13%  Similarity=0.177  Sum_probs=52.6

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhc---CCC-CcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLAS---GTK-GKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQR---LNEILSE   76 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~a---g~~-~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~---~~~~ya~   76 (114)
                      .+.|+.|+++|.+.|.|.+.+++   ++. ...++.|+|.+.+=.|.+..     .+ ...+++.+..+.   ....-++
T Consensus       445 a~VP~itvI~g~~~Ggg~~am~~~~~~~~~~~~~awp~A~~sVm~pEgaa-----~I-l~~~~~~~~~~~~~~~~~~~~~  518 (588)
T 3gf3_A          445 SKLPSLEITIRKASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGETAA-----NA-MYSRKLVKAKKAGEDLQPIIGK  518 (588)
T ss_dssp             HCSCEEEEESSEEETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHHHH-----HH-HHHHHHHHC-------CHHHHH
T ss_pred             CCCCEEEEEcCCccHHHHHHhcccccCCccceEEECCCceEEeCCHHHHH-----HH-HhhhHHhhhhccccccchHHHH
Confidence            46899999999999977766653   120 13567788877766664321     11 011111111000   0000000


Q ss_pred             HhCCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          77 KTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        77 ~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                           ..++.+..++.  .+|--|-+.|++|.||+++
T Consensus       519 -----~~~~~~~y~~~--~~p~~aA~r~~vD~VIdP~  548 (588)
T 3gf3_A          519 -----MNDMIQMYTDK--SRPKYCTEKGMVDEIVDMT  548 (588)
T ss_dssp             -----HHHHHHHHHHT--TSHHHHHHTTSSSEECCGG
T ss_pred             -----HHHHHHHHHHh--CCHHHHHhcCCCCeeeCHH
Confidence                 11222222222  4899999999999999875

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=90.53  E-value=0.22  Score=37.11  Aligned_cols=73  Identities=14%  Similarity=0.092  Sum_probs=49.4

Q ss_pred             CCCeEEEEehhhhhHHHHHH-hcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q psy5228           5 KPNVSTLCIGLAASMGAFLL-ASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVK   83 (114)
Q Consensus         5 ~~~V~t~~~G~aaS~as~i~-~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~   83 (114)
                      ..|..+++.|-+.+.++..+ +.|+.  .++.|+|.+-+--|..-                          ++-++..  
T Consensus       194 ~vP~Isvv~g~~~GG~~as~a~~~D~--i~a~p~A~i~~aGP~vi--------------------------~~~~~~~--  243 (285)
T 2f9i_B          194 GLLYISYLTHPTTGGVSASFASVGDI--NLSEPKALIGFAGRRVI--------------------------EQTINEK--  243 (285)
T ss_dssp             TCCEEEEEEEEEEHHHHTTGGGCCSE--EEECTTCBEESSCHHHH--------------------------HHHHTSC--
T ss_pred             CCCEEEEEeCCccHHHHHHhhhCCCE--EEEeCCcEEEEcCHHHH--------------------------HHHhccc--
Confidence            57999999999987776663 45665  78889988877666331                          0011111  


Q ss_pred             HHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          84 KISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        84 ~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                           .. +-+=+++-..+.|+||.|++++
T Consensus       244 -----~~-e~~~~Ae~~~~~G~iD~Iv~~~  267 (285)
T 2f9i_B          244 -----LP-DDFQTAEFLLEHGQLDKVVHRN  267 (285)
T ss_dssp             -----CC-TTTTBHHHHHHTTCCSEECCGG
T ss_pred             -----ch-HhHhhHHHHHhcCCccEEeChH
Confidence                 11 2334688889999999999854

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=81.66  E-value=1.6  Score=36.94  Aligned_cols=43  Identities=14%  Similarity=0.192  Sum_probs=29.2

Q ss_pred             cCCCeEEEE--ehhhhhHHHHHHhcCCCC--c--EEecCCceeeeecCCc
Q psy5228           4 IKPNVSTLC--IGLAASMGAFLLASGTKG--K--RFSLPNSRIMIHQPLG   47 (114)
Q Consensus         4 ~~~~V~t~~--~G~aaS~as~i~~ag~~~--~--R~~~p~s~~miH~p~~   47 (114)
                      .+.|+.|++  .|-+.+ |++.+++..-+  .  .++.|+|.+-+=.|.+
T Consensus       520 a~VP~itvI~r~Ge~~G-Ga~~~~~~~~~~d~~ev~Awp~A~~~VM~pEg  568 (793)
T 2x24_A          520 YRQPVLIYIPPYAEVRG-GSWAVMDTSINPLCIEMYADRESRASVLEPEG  568 (793)
T ss_dssp             CCSCEEEEECTTCEEEH-HHHHTTCGGGSTTTEEEEEETTCEEESSCHHH
T ss_pred             cCCCEEEEEecCCcccc-hhHHhhhcccCccHHHHhhhccCEEEecCHHH
Confidence            467999999  787755 66666643222  2  3788888887766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d1yg6a1	183	c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Es	1e-49
d1tg6a1	193	c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Hum	5e-42
d2cbya1	179	c.14.1.1 (A:15-193) Clp protease, ClpP subunit {My	3e-34
d2f6ia1	190	c.14.1.1 (A:177-366) Clp protease, ClpP subunit {P	2e-31
d1y7oa1	192	c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Str	1e-27

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

 Score =  153 bits (388), Expect = 1e-49
 Identities = 74/113 (65%), Positives = 94/113 (83%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQFIKP+VST+C+G AASMGAFLL +G KGKRF LPNSR+MIHQPLGG QGQA+DIEI A
Sbjct: 70  MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHA 129

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
           REIL ++ R+NE+++  TG S+++I +DT+RD F+SA  A+EY L+D IL  R
Sbjct: 130 REILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR 182

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  134 bits (339), Expect = 5e-42
 Identities = 58/113 (51%), Positives = 79/113 (69%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           MQ+I   + T C+G AASMG+ LLA+GT G R SLPNSRIMIHQP GGA+GQA+DI IQA
Sbjct: 80  MQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQA 139

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
            EI+ L+++L  I ++ T  S++ I    +RD +MS   A E+ ++DK+L   
Sbjct: 140 EEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHP 192

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  114 bits (287), Expect = 3e-34
 Identities = 49/110 (44%), Positives = 78/110 (70%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
           M     +++T  +G+AASMG FLLA+GTKGKR++LP++RI++HQPLGG  G A+DI IQA
Sbjct: 67  MVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQA 126

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
            +   +++ +  + +E TG  +++I  D+DRD + +A  A+EY  +D I+
Sbjct: 127 EQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHII 176

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} Length = 190

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

 Score =  107 bits (269), Expect = 2e-31
 Identities = 57/114 (50%), Positives = 79/114 (69%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
             +IK ++ T+  GL ASM + +LASG KGKR SLPN RIMIHQPLG A G   DIEIQ 
Sbjct: 71  FNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQT 130

Query: 61  REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
           +EILYL++ L   LS  T  +V+ I +D+DRD +M+A  A +Y +ID++++ + 
Sbjct: 131 KEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL 184

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} Length = 192

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 98.2 bits (244), Expect = 1e-27
 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 2/112 (1%)

Query: 1   MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQG--QASDIEI 58
           M FIK +V T+ +G+AASMG  + +SG KGKRF LPN+  MIHQP+GG  G  Q +D+ I
Sbjct: 78  MNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAI 137

Query: 59  QAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
               +L  R  L +IL+E +G S++K+  D +RDN+MSA+  +EY  ID+I+
Sbjct: 138 APEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIM 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	100.0
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	100.0
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	98.45
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	98.39
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	98.36
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	98.34
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	98.33
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	98.27
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	98.21
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	98.18
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	98.18
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	98.16
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	98.14
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	98.1
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	97.96
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	97.87
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	97.83
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.35
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.21
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	95.93
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	95.37
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	93.59
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	91.04

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=9.9e-42  Score=243.65  Aligned_cols=114  Identities=51%  Similarity=0.798  Sum_probs=111.8

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |+++++||+|+|.|.|+|||++|++||++|+|++.|||++|||||++++.|++.|++.++++++++++.+.++|+++||+
T Consensus        80 i~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~  159 (193)
T d1tg6a1          80 MQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQ  159 (193)
T ss_dssp             HHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhhcCceEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccCC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK  114 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~~  114 (114)
                      +.++|+++|++|+||||+||++|||||+|++++|
T Consensus       160 ~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~~~p  193 (193)
T d1tg6a1         160 SLQVIESAMERDRYMSPMEAQEFGILDKVLVHPP  193 (193)
T ss_dssp             CHHHHHHHHSSCEEECHHHHHHHTSCSEECSSCC
T ss_pred             CHHHHHHHhccCccCCHHHHHHcCCCCEEccCCC
Confidence            9999999999999999999999999999999876

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.8e-40  Score=232.60  Aligned_cols=112  Identities=44%  Similarity=0.811  Sum_probs=99.8

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |++++.||+|+|.|.|+|+|++|+++|++|+|++.|||++|+|||+++..|+..+++..+++++++++.+.++|+++||+
T Consensus        67 i~~~~~~v~t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~  146 (179)
T d2cbya1          67 MVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQ  146 (179)
T ss_dssp             HHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhhccceeeehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      +.++|.++|++|+||||+||++|||||+|+++
T Consensus       147 ~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         147 PIERIEADSDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             CHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             CHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            99999999999999999999999999999986

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-39  Score=228.98  Aligned_cols=113  Identities=65%  Similarity=1.064  Sum_probs=110.2

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |+++++||+|+|.|.|+|||++|++||++|+|++.|||++|+|||++++.|+..+++..+++++++++.+.++|+++||+
T Consensus        70 i~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~  149 (183)
T d1yg6a1          70 MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ  149 (183)
T ss_dssp             HHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      +.+++.++|++|+||||+||++|||||+|++.+
T Consensus       150 ~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~~  182 (183)
T d1yg6a1         150 SLEQIERDTERDRFLSAPEAVEYGLVDSILTHR  182 (183)
T ss_dssp             CHHHHHHHTSSCEEEEHHHHHHHTSSSEECCCC
T ss_pred             CHHHHHHHhccCccccHHHHHHcCCCcEEeccC
Confidence            999999999999999999999999999999976

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=3.6e-39  Score=229.95  Aligned_cols=113  Identities=47%  Similarity=0.845  Sum_probs=98.1

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQA--SDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~--~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      |+++++||+|+|+|.|+|+|++|++||++|+|++.|||++|||||+++..|+.  .+++.+++++.++++.+.++|+++|
T Consensus        78 i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~t  157 (192)
T d1y7oa1          78 MNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENS  157 (192)
T ss_dssp             HHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999988864  5778899999999999999999999


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      |++.+++.++|++|+||||+||++|||||+|++..
T Consensus       158 g~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~~  192 (192)
T d1y7oa1         158 GQSMEKVHADAERDNWMSAQETLEYGFIDEIMANN  192 (192)
T ss_dssp             TCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCCC
T ss_pred             CCCHHHHHHhhcCCceecHHHHHHcCCCcEEecCC
Confidence            99999999999999999999999999999999863

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.5e-38  Score=226.32  Aligned_cols=113  Identities=50%  Similarity=0.821  Sum_probs=102.3

Q ss_pred             CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      |++++.||+|+|.|.|+|+|++|+++|++|+|++.|||++|+|||+++..|+.+|++..+++++++++.+.++|+++||+
T Consensus        71 i~~~~~~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~  150 (190)
T d2f6ia1          71 FNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQ  150 (190)
T ss_dssp             HHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhhCCceEEEEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      +.++|.++|++|+||+|+||++|||||+|++++
T Consensus       151 ~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~~  183 (190)
T d2f6ia1         151 TVETIEKDSDRDYYMNALEAKQYGIIDEVIETK  183 (190)
T ss_dssp             CHHHHHHHHHTTCEECHHHHHHHTSCSEECCCS
T ss_pred             CHHHHHHhccCCeeecHHHHHHcCCCcEEcccC
Confidence            999999999999999999999999999999875

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.4e-07  Score=64.95  Aligned_cols=90  Identities=11%  Similarity=0.007  Sum_probs=67.4

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-+++++|.  |++.++++|.+-...-|.   .|...-+          .+.        .
T Consensus        95 ~~~~kpvIa~v~G~a~GgG~~la~~~D~--~ia~~~a~f~~pe~~~G~~p~~g~~~~l----------~~~--------~  154 (245)
T d2f6qa1          95 IDFPKPLIAVVNGPAVGISVTLLGLFDA--VYASDRATFHTPFSHLGQSPEGCSSYTF----------PKI--------M  154 (245)
T ss_dssp             HSCCSCEEEEECSCEETHHHHGGGGCSE--EEEETTCEEECCTGGGTCCCCTTHHHHH----------HHH--------H
T ss_pred             hhcCCceEEEECCccccccccchhhhhh--hhhhccCeEecccccCCCCccccchhhc----------ccc--------c
Confidence            3568899999999999999999999998  999999999886665442   2222221          111        1


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ......+++-....++|+||+++||||+|+++.
T Consensus       155 --g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  187 (245)
T d2f6qa1         155 --SPAKATEMLIFGKKLTAGEACAQGLVTEVFPDS  187 (245)
T ss_dssp             --CHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTT
T ss_pred             --ccchhhhhcccccccccccccccccccccCCcc
Confidence              233445566667889999999999999998754

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=98.39  E-value=2.4e-07  Score=65.47  Aligned_cols=92  Identities=15%  Similarity=0.012  Sum_probs=66.7

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      ..++.||.+.+-|.|.+.|..|++++|-  |++.++++|..+....+..+.. -               ...+.+..  .
T Consensus        91 ~~~~kpvIaav~G~a~GgG~~lal~~D~--ria~~~a~~~~~e~~~g~~~~~-~---------------~~~l~~~~--g  150 (253)
T d1uiya_          91 YTYPKPTVAAVNGPAVAGGAGLALACDL--VVMDEEARLGYTEVKIGFVAAL-V---------------SVILVRAV--G  150 (253)
T ss_dssp             HHCSSCEEEEECSCEETHHHHHHHTSSE--EEEETTCEEECCHHHHTCCCHH-H---------------HHHHHHHS--C
T ss_pred             hcCCCCEEEEeCeEEehhhHHHHhhhhh--hhhhhhhHHhhhhccccccccc-c---------------hhhhhccc--C
Confidence            3568899999999999999999999998  9999999998877654432210 0               00111111  2


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      .....+++-....++++||+++||||+|++..
T Consensus       151 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~  182 (253)
T d1uiya_         151 EKAAKDLLLTGRLVEAREAKALGLVNRIAPPG  182 (253)
T ss_dssp             HHHHHHHHHHCCEEEHHHHHHHTSCSEEECTT
T ss_pred             HHHHHHHhhcCcCCCHHHHHHhCCCccccccc
Confidence            33344444456789999999999999998764

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.9e-07  Score=66.04  Aligned_cols=90  Identities=14%  Similarity=0.095  Sum_probs=67.2

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|.-|++++|.  |++.++++|.+-...-|.   .|...-+                  .+..
T Consensus        96 ~~~~kpvIaav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G~~p~~g~~~~l------------------~~~i  155 (266)
T d1hzda_          96 ANLPVPTIAAIDGLALGGGLELALACDI--RVAASSAKMGLVETKLAIIPGGGGTQRL------------------PRAI  155 (266)
T ss_dssp             HTCSSCEEEEESEEEETHHHHHHHHSSE--EEEETTCEEECCGGGGTCCCCSSHHHHH------------------HHHH
T ss_pred             hcCCcccccccccccccccceeccccce--eeecCCcEEeecccceeecCCccceeee------------------hhhh
Confidence            3578899999999999999999999998  999999999776665442   2222222                  1111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ......+++-....++|+||+++||||+|+++.
T Consensus       156 --g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  188 (266)
T d1hzda_         156 --GMSLAKELIFSARVLDGKEAKAVGLISHVLEQN  188 (266)
T ss_dssp             --CHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCC
T ss_pred             --HHHHHHhhhccCCccCHHHhhcccccccccChh
Confidence              234444555567899999999999999998763

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=98.34  E-value=4.9e-07  Score=63.63  Aligned_cols=91  Identities=10%  Similarity=0.137  Sum_probs=63.2

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      ..++.||.+.+-|.|.+.|.-|++++|.  |++.++++|.+-....|...   ..-.  ..|.+           ..  .
T Consensus        91 ~~~~kpvIaav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G~~p---~~g~--~~l~~-----------~i--G  150 (230)
T d2a7ka1          91 LNVNKPTIAAVDGYAIGMGFQFALMFDQ--RLMASTANFVMPELKHGIGC---SVGA--AILGF-----------TH--G  150 (230)
T ss_dssp             HTCCSCEEEEECSEEETHHHHHHTTSSE--EEEETTCEEECCGGGGTCCC---HHHH--HHHHH-----------HH--C
T ss_pred             cchhcceeeecccccccccccchhccch--hhccccchhhhccccccccc---cccc--ccccc-----------cc--c
Confidence            3568899999999999999999999998  99999999876554444322   1110  01111           11  1


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .....+++-....++++||+++||||+|+++
T Consensus       151 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  181 (230)
T d2a7ka1         151 FSTMQEIIYQCQSLDAPRCVDYRLVNQVVES  181 (230)
T ss_dssp             HHHHHHHHHHCCCBCHHHHHHHTCCSEEECH
T ss_pred             cccccccccccccchHHHHHHhhhcccCCCh
Confidence            2222333334567899999999999999874

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.33  E-value=3.2e-07  Score=65.29  Aligned_cols=92  Identities=11%  Similarity=0.084  Sum_probs=65.1

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG--AQGQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~--~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      ..++.||.+.+-|.|.+.|.-|++++|.  |++.++++|.+..|...  ..-...-               ...+.++.|
T Consensus        93 ~~~~kpvIa~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~~~pe~~~Gl~p~~g~---------------~~~l~~~iG  155 (249)
T d1sg4a1          93 YQSNLVLVSAINGACPAGGCLVALTCDY--RILADNPRYCIGLNETQLGIIAPFWL---------------KDTLENTIG  155 (249)
T ss_dssp             HTCSSEEEEEECEEBCHHHHHHHTTSSE--EEEECCTTCCBSCCGGGGTCCCCHHH---------------HHHHHHHHC
T ss_pred             hcCccccchhhccccccccccccccccc--ceeecccccccccccccccccccccc---------------ccccccccc
Confidence            3468899999999999999999999998  99999999988877643  2111111               111122222


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        .....+++-....++++||+++||||+|++.
T Consensus       156 --~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~  186 (249)
T d1sg4a1         156 --HRAAERALQLGLLFPPAEALQVGIVDQVVPE  186 (249)
T ss_dssp             --HHHHHHHHHHTCCBCHHHHHHHTSSSEEECG
T ss_pred             --cccccccccccccccHHHHHhhccccccCCh
Confidence              2222333444567899999999999999865

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.27  E-value=6.3e-07  Score=65.79  Aligned_cols=90  Identities=12%  Similarity=0.066  Sum_probs=66.2

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+.|.|.+.|.-|+++||.  |++.++++|.+.....|.   .|-...+..                  ..
T Consensus       100 ~~~~kPvIaav~G~a~GgG~elal~cD~--ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r------------------~i  159 (310)
T d1wdka4         100 EDLNVPTVAAINGIALGGGLEMCLAADF--RVMADSAKIGLPEVKLGIYPGFGGTVRLPR------------------LI  159 (310)
T ss_dssp             HTCSSCEEEEECSCEETHHHHHHHTSSE--EEEETTCEEECGGGGGTCCCCSSHHHHHHH------------------HH
T ss_pred             hcCCccceeeccccccccccccchhhhh--hhccccceecccccccCCCccccchhhhhh------------------hh
Confidence            4578899999999999999999999998  999999998776665442   233222211                  11


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ......+++-....++++||+++||||+|++..
T Consensus       160 --G~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~  192 (310)
T d1wdka4         160 --GVDNAVEWIASGKENRAEDALKVSAVDAVVTAD  192 (310)
T ss_dssp             --CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGG
T ss_pred             --hhhhhhhhhccccccCHHHHhhccCccEEccHH
Confidence              222333444456679999999999999998753

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=1e-06  Score=62.30  Aligned_cols=90  Identities=18%  Similarity=0.081  Sum_probs=63.7

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      ..++.||.+.+-|.|.+.|..|++++|-  |++.++++|.+-...-|.   .|...-+...                  .
T Consensus        94 ~~~~kPvIaav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~------------------i  153 (260)
T d1mj3a_          94 TRIKKPVIAAVNGYALGGGCELAMMCDI--IYAGEKAQFGQPEILLGTIPGAGGTQRLTRA------------------V  153 (260)
T ss_dssp             GGCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGGGTCCCCSSTTTHHHHH------------------H
T ss_pred             ccCCCeEEEEEcCeEeHHHHHHHHHCCE--EEEcCCCEEECchhccCcCCcccHHHHHHHH------------------h
Confidence            4568899999999999999999999998  999999999885544332   2322222110                  1


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ......+++-....++++||+++||||+|++..
T Consensus       154 --g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~  186 (260)
T d1mj3a_         154 --GKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVE  186 (260)
T ss_dssp             --CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTT
T ss_pred             --CHHHHHHHHHcCcccCchhhccCCCceeeeccc
Confidence              112223333334668999999999999998764

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.18  E-value=1.2e-06  Score=62.63  Aligned_cols=89  Identities=15%  Similarity=0.113  Sum_probs=64.4

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-Q--GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~--G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+....-|. .  |...-+                  . +.-
T Consensus       105 ~~~kPvIaav~G~a~GgG~~lal~~D~--ria~~~a~f~~pe~~~Gl~p~~~~~~~~------------------~-~~~  163 (275)
T d1dcia_         105 KCPKPVIAAIHGGCIGGGVDLISACDI--RYCTQDAFFQVKEVDVGLAADVGTLQRL------------------P-KVI  163 (275)
T ss_dssp             HSSSCEEEEECSEEETHHHHHHTTSSE--EEEETTCEEECCGGGGTSCCCSSHHHHG------------------G-GTC
T ss_pred             hcCCCEEEEEeeEeehhhHHHHhhcCc--hhhccCccccchhccccccccccccccc------------------c-ccc
Confidence            468899999999999999999999998  999999998876655442 1  221111                  1 111


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      ........++-....++++||++.||||+|++.
T Consensus       164 g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~  196 (275)
T d1dcia_         164 GNRSLVNELTFTARKMMADEALDSGLVSRVFPD  196 (275)
T ss_dssp             SCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESS
T ss_pred             ccccccccccccccccchhhhccCCCceeeeeh
Confidence            122223345556788999999999999999864

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.8e-06  Score=61.51  Aligned_cols=89  Identities=11%  Similarity=0.045  Sum_probs=65.5

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-Q--GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~--G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|..+++++|-  |++.++++|.+....-|. -  |-..-+                  .+.  
T Consensus        96 ~~~kP~Iaav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~r~--  153 (258)
T d2fw2a1          96 QFKKPIVVSVNGPAIGLGASILPLCDL--VWANEKAWFQTPYTTFGQSPDGCSSITF------------------PKM--  153 (258)
T ss_dssp             HCCSCEEEEECSCEETHHHHTGGGSSE--EEEETTCEEECCHHHHTCCCCTTHHHHH------------------HHH--
T ss_pred             ccceeeeeecccccccccccccccccc--cceecccceeeccccccccccccccccc------------------hhh--
Confidence            468899999999999999999999998  999999998876655442 1  221111                  111  


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                      .......+++-...-++++||+++||||+|+++.
T Consensus       154 ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  187 (258)
T d2fw2a1         154 MGKASANEMLIAGRKLTAREACAKGLVSQVFLTG  187 (258)
T ss_dssp             HCHHHHHHHHTTCCEEEHHHHHHTTSCSEEECST
T ss_pred             cCccccchhhccCccccccccccccccccccccc
Confidence            1223334455567889999999999999998764

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=98.16  E-value=8.5e-07  Score=63.46  Aligned_cols=91  Identities=11%  Similarity=0.004  Sum_probs=65.2

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQG--QASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G--~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      ..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+.....|...  -...+         +.        +.. 
T Consensus       100 ~~~~kPvIa~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~~~~~~---------l~--------~~~-  159 (263)
T d1wz8a1         100 LNFPRPVVAAVEKVAVGAGLALALAADI--AVVGKGTRLLDGHLRLGVAAGDHAVLL---------WP--------LLV-  159 (263)
T ss_dssp             HHSSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHTSCCTTTHHHH---------TH--------HHH-
T ss_pred             hhhhcceeeecccccccccccccccccc--ccccccccccccccccccccccccccc---------cc--------ccc-
Confidence            3468899999999999999999999998  99999999977766544321  11111         11        111 


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                       ......+++-....++++||+++||||+|++..
T Consensus       160 -G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~  192 (263)
T d1wz8a1         160 -GMAKAKYHLLLNEPLTGEEAERLGLVALAVEDE  192 (263)
T ss_dssp             -CHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGG
T ss_pred             -ccchhhhhcccccccchhHHHhcCCcccccchh
Confidence             222333444455679999999999999998753

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=98.14  E-value=1e-06  Score=63.05  Aligned_cols=88  Identities=10%  Similarity=0.101  Sum_probs=63.2

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG   79 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg   79 (114)
                      .++.||.+.+-|.|.+.|..|++++|.  |++.+++++.+..+..+..   |-..-+..          .+-        
T Consensus        98 ~~~kPvIaav~G~a~GgG~~lal~~D~--ria~~~a~~~~~~~~~g~~~~~g~~~~l~~----------~ig--------  157 (269)
T d1nzya_          98 RVKRPVLAAINGVAAGGGLGISLASDM--AICADSAKFVCAWHTIGIGNDTATSYSLAR----------IVG--------  157 (269)
T ss_dssp             HCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHTCCCCTTHHHHHHH----------HHH--------
T ss_pred             hhcchhehhhhhhcCCCceeeeecccH--hhhhhhhhhccccccccccccccccccccc----------ccC--------
Confidence            468899999999999999999999998  9999999999887765432   22211111          111        


Q ss_pred             CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        .....+++-...-++|+||+++||||+|++.
T Consensus       158 --~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~  188 (269)
T d1nzya_         158 --MRRAMELMLTNRTLYPEEAKDWGLVSRVYPK  188 (269)
T ss_dssp             --HHHHHHHHHHCCCBCHHHHHHHTSCSCEECH
T ss_pred             --hhhhhhccccccccchhHHHHcCCccccccc
Confidence              1111233334556799999999999999864

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=1.3e-06  Score=62.37  Aligned_cols=92  Identities=9%  Similarity=0.027  Sum_probs=65.0

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS   81 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s   81 (114)
                      ..++.||.+.+.|.|.+.|..|++++|.  |++.++++|-+-.+..+......-               ...+.+.  ..
T Consensus        93 ~~~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~~~~pe~~~Gl~~~~~~---------------~~~l~r~--~g  153 (261)
T d1ef8a_          93 QKFPKPIISMVEGSVWGGAFEMIMSSDL--IIAASTSTFSMTPVNLGVPYNLVG---------------IHNLTRD--AG  153 (261)
T ss_dssp             HHCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHTCCCCHHH---------------HHTTSSS--SC
T ss_pred             HhCchhhhhcccccccchhhhhhhhhhh--hhhhHhHHHhhhhccccccccccc---------------ccccccc--cC
Confidence            3568899999999999999999999998  999999988766555443222111               0011111  12


Q ss_pred             HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .....+++-....++++||+++||||+|+++
T Consensus       154 ~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~  184 (261)
T d1ef8a_         154 FHIVKELIFTASPITAQRALAVGILNHVVEV  184 (261)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHTTSCSEEECH
T ss_pred             ccccccccccCceEcHHHHHHcCCcceeeec
Confidence            3333444445678999999999999999864

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=3.3e-06  Score=60.14  Aligned_cols=88  Identities=14%  Similarity=0.037  Sum_probs=61.2

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCC-ceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPN-SRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~-s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+-|.|.+.|..|++++|-  |++.+. ++|......-|.   .|-..-+                  .+..
T Consensus       106 ~~~kP~IAav~G~a~GgG~~lal~~D~--~ia~~~~~~~~~pe~~lGl~p~~g~~~~l------------------~r~~  165 (266)
T d1pjha_         106 KHSKVLICCLNGPAIGLSAALVALCDI--VYSINDKVYLLYPFANLGLITEGGTTVSL------------------PLKF  165 (266)
T ss_dssp             HCCSEEEEEECSCEEHHHHHHHHHSSE--EEESSTTCEEECCHHHHTCCCCTTHHHHH------------------HHHH
T ss_pred             hcchhhhhhhhcccccccccchhccch--hhhhhcccccccccccccccccccccccc------------------cccc
Confidence            467899999999999999999999998  998764 676665544332   2221111                  1111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                        ......+++-....++++||+++||||+|++.
T Consensus       166 --g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~  197 (266)
T d1pjha_         166 --GTNTTYECLMFNKPFKYDIMCENGFISKNFNM  197 (266)
T ss_dssp             --CHHHHHHHHHTTCCEEHHHHHHTTCCSEECCC
T ss_pred             --ccchhhhhhccCCcCCHHHHHHCCCEeEeeCc
Confidence              22233344445677999999999999999864

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.87  E-value=7.7e-06  Score=59.13  Aligned_cols=89  Identities=13%  Similarity=0.047  Sum_probs=62.6

Q ss_pred             ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCc-eeeeecCCccC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228           3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNS-RIMIHQPLGGA-Q--GQASDIEIQAREILYLRQRLNEILSEKT   78 (114)
Q Consensus         3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s-~~miH~p~~~~-~--G~~~~l~~~~~~l~~~~~~~~~~ya~~t   78 (114)
                      .++.||.+.+.|.|.+.|+.++++++-  |++.+.+ +|.+.....|. -  |-..-+          .        +..
T Consensus       128 ~~~kPvIaav~G~a~GGG~~lal~~D~--~ia~~~~~~f~~pe~~~Gl~p~~~~~~~L----------~--------r~i  187 (297)
T d1q52a_         128 FMPKVVICLVNGWAAGGGHSLHVVCDL--TLASREYARFKQTDADVGSFDGGYGSAYL----------A--------RQV  187 (297)
T ss_dssp             HSSSEEEEEECSEEETHHHHHHHHSSE--EEEETTTCEEECCGGGGTCCCCSTTTHHH----------H--------HHH
T ss_pred             hcCCeEEEEEcceeeeccchhhhhhhc--cccccccccceeeeecccccccccccccc----------c--------ccc
Confidence            357899999999999999999999998  9998755 67776666542 1  221221          1        111


Q ss_pred             CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        ......+++-....++++||+++||||+|++..
T Consensus       188 --G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~  220 (297)
T d1q52a_         188 --GQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHA  220 (297)
T ss_dssp             --CHHHHHHHHHHCCEECHHHHHHHTSCSEEECGG
T ss_pred             --CccceeeccccccccchHhhhhhccccccCchH
Confidence              112233344456889999999999999998753

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=97.83  E-value=1.5e-05  Score=56.39  Aligned_cols=88  Identities=10%  Similarity=0.055  Sum_probs=57.8

Q ss_pred             cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecC-Ccc-C--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228           2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQP-LGG-A--QGQASDIEIQAREILYLRQRLNEILSEK   77 (114)
Q Consensus         2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p-~~~-~--~G~~~~l~~~~~~l~~~~~~~~~~ya~~   77 (114)
                      ..++.||.+.+-|.|.+ |..+++++|.  |++.+++.|...+- ..+ .  .|-..-+                  .+.
T Consensus       102 ~~~~~pvIa~v~g~~~G-G~~l~l~~D~--ria~~~a~f~~~pe~~~g~~p~~g~~~~l------------------~r~  160 (249)
T d1szoa_         102 LSIEVPVIAAVNGPVTN-APEIPVMSDI--VLAAESATFQDGPHFPSGIVPGDGAHVVW------------------PHV  160 (249)
T ss_dssp             HHCCSCEEEEECSCBCS-STHHHHTSSE--EEEETTCEEECTTSGGGTCCCTTTHHHHH------------------HHH
T ss_pred             ccCcccceeeecccccc-cccccccccc--ccccCCcEEEEeecccccccccccccccc------------------ccc
Confidence            34678999998887776 6677778887  99999999864321 122 2  2221111                  111


Q ss_pred             hCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      .  ......+++-....++++||+++||||+|+++
T Consensus       161 i--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  193 (249)
T d1szoa_         161 L--GSNRGRYFLLTGQELDARTALDYGAVNEVLSE  193 (249)
T ss_dssp             H--CHHHHHHHHHTTCEEEHHHHHHHTSCSEEECH
T ss_pred             c--CccceeeecccCCCCCHHHHHHhCCcCcccCH
Confidence            1  12333344445677899999999999999874

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.0001  Score=54.27  Aligned_cols=80  Identities=26%  Similarity=0.263  Sum_probs=56.5

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVK   83 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~   83 (114)
                      ++.|+.++++|.+.|-|++.+..++.  ..|.+||.+.+=.|.+-    +                  .++ =+......
T Consensus       188 ~~vP~i~vv~g~g~~gga~a~~~~d~--v~m~~~a~~svispEg~----A------------------sIL-wkd~~~a~  242 (316)
T d2f9ya1         188 LGVPVVCTVIGEGGSGGALAIGVGDK--VNMLQYSTYSVISPEGC----A------------------SIL-WKSADKAP  242 (316)
T ss_dssp             CSSCEEEEEEEEEEHHHHHTTCCCSE--EEECTTCEEESSCHHHH----H------------------HHH-SSCSTTHH
T ss_pred             CCCceEEEEEhhhhchhhhhhhhhhH--HHHHhhhHHhhccchhh----h------------------hHh-hccchhhc
Confidence            57899999999999999999999987  99999999987766531    0                  000 01111122


Q ss_pred             HHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228          84 KISQDTDRDNFMSAKMAMEYCLIDKILKQ  112 (114)
Q Consensus        84 ~i~~~m~~~~~lta~eA~~~GliD~Ii~~  112 (114)
                      +..+.|.    +|+++-+++|+||+|+..
T Consensus       243 eaAealk----lta~dL~~lgiIDeII~E  267 (316)
T d2f9ya1         243 LAAEAMG----IIRPRLKELKLIDSIIPE  267 (316)
T ss_dssp             HHHHHHT----CSHHHHHTTTSCSCCCCC
T ss_pred             chHHHHh----hhhHHHHHcCchhhcccC
Confidence            2222222    778888999999999953

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.21  E-value=0.003  Score=45.03  Aligned_cols=93  Identities=18%  Similarity=0.182  Sum_probs=52.8

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcC--CCCcEEecCCceeeeecCCccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASG--TKGKRFSLPNSRIMIHQPLGGA-QGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag--~~~~R~~~p~s~~miH~p~~~~-~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      .+.|..++++|.+.+.|.+.+++.  .....++-|+|.+.+=.|.+.. .....+++... +-...++.+.+.|.     
T Consensus       139 ~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~vm~pe~aa~v~~~~~l~~~~-~~~~~~~~~~~~~~-----  212 (264)
T d1vrga2         139 ATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAANIIFKREIEASS-NPEETRRKLIEEYK-----  212 (264)
T ss_dssp             CCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTHHHHHHSS-CHHHHHHHHHHHHH-----
T ss_pred             CCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEecCHHHhhhhhhhhhhhhhh-CcHHHHHHHHHHHH-----
Confidence            467999999999999888666531  1234777777777666665321 11111221110 00111111111111     


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                                 +..-+|-.|.+.|++|+||+++
T Consensus       213 -----------e~~~~~~~aa~~g~iD~VIdP~  234 (264)
T d1vrga2         213 -----------QQFANPYIAASRGYVDMVIDPR  234 (264)
T ss_dssp             -----------HHTSSHHHHHHTTSSSEECCGG
T ss_pred             -----------HHhcCHHHHHHcCCCCeeECHH
Confidence                       1224688999999999999875

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=95.93  E-value=0.0043  Score=44.19  Aligned_cols=93  Identities=14%  Similarity=0.162  Sum_probs=50.8

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCC--CCcEEecCCceeeeecCCccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGT--KGKRFSLPNSRIMIHQPLGGA-QGQASDIEIQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~--~~~R~~~p~s~~miH~p~~~~-~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      .+.|..|+++|.+++.|.+.+++..  ...+++-|++.+-.=.|.+.. .....++... ++-+..+.            
T Consensus       139 ~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~vMg~Egaa~v~~~~el~a~-~~~~~~~~------------  205 (264)
T d1on3a2         139 ATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAA-DDPDAMRA------------  205 (264)
T ss_dssp             CCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTHHHHHHS-SCHHHHHH------------
T ss_pred             CCCCEEEEEeccccCccccccccccCChhheeeHHhhHhhhccHHHHHHHHHhhhhhhh-hhhhhhhH------------
Confidence            4679999999999998777776432  223666666665554444321 0111111110 00000111            


Q ss_pred             CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228          81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR  113 (114)
Q Consensus        81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~  113 (114)
                        +.+.++.  +.+-+|-.|.+.|+||+||+++
T Consensus       206 --~~~~e~~--~~~~~p~~aA~~g~iD~VIdP~  234 (264)
T d1on3a2         206 --EKIEEYQ--NAFNTPYVAAARGQVDDVIDPA  234 (264)
T ss_dssp             --HHHHHHH--HHHSSHHHHHHTTSSSEECCGG
T ss_pred             --HHHHHHH--HHhcCHHHHHHcCCCCeeECHH
Confidence              1111111  2234688999999999999875

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=95.37  E-value=0.027  Score=40.56  Aligned_cols=97  Identities=12%  Similarity=0.159  Sum_probs=52.8

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCc--cCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLG--GAQGQASDIE-IQAREILYLRQRLNEILSEKTGH   80 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~--~~~G~~~~l~-~~~~~l~~~~~~~~~~ya~~tg~   80 (114)
                      .+.|..|+++|.+++.|.+.++ |.    ...|...|.+-.|.+  +..|-..-.. .+..++.+.         +.-+.
T Consensus       155 ~~VP~isvi~r~~~G~a~~am~-g~----~~~~~~~~~~awP~aeigvMg~E~aa~vl~~~el~~~---------~~~~~  220 (299)
T d1pixa3         155 SHIPQFEITLRKGTAAAHYVLG-GP----QGNDTNAFSIGTAATEIAVMNGETAATAMYSRRLAKD---------RKAGK  220 (299)
T ss_dssp             CCCCEEEEECSEEETTHHHHTT-CT----TCTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHH---------HHTTC
T ss_pred             hcceeEEEEecccccccccccc-cC----ccCcccceecCCCccccccccchhhheeehhhhhhhh---------hhhhh
Confidence            4679999999999997776554 43    233555566666653  3444211110 111222221         22233


Q ss_pred             CHHHHHhhhcC-----CceecHHHHHHcCcceeecccCC
Q psy5228          81 SVKKISQDTDR-----DNFMSAKMAMEYCLIDKILKQRK  114 (114)
Q Consensus        81 s~~~i~~~m~~-----~~~lta~eA~~~GliD~Ii~~~~  114 (114)
                      ..++..+.+.+     +.-.+|..|.+.|+||+||++++
T Consensus       221 ~~~e~~e~~~~~~~~~~~~~sp~~aAs~~~iD~IIDP~d  259 (299)
T d1pixa3         221 DLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMNK  259 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECCTTT
T ss_pred             hhhHHHHHHHHHHHHHHHhcCHHHHHHhCCcCeeECHHH
Confidence            32222222111     01158899999999999999863

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=93.59  E-value=0.0079  Score=42.72  Aligned_cols=43  Identities=12%  Similarity=0.047  Sum_probs=29.9

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcC--CCCcEEecCCceeeeecCC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASG--TKGKRFSLPNSRIMIHQPL   46 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag--~~~~R~~~p~s~~miH~p~   46 (114)
                      .+.|..|+++|.+.+.|...+++.  .....++.|++.+.+=.|.
T Consensus       137 ~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gvm~pe  181 (263)
T d1xnya2         137 ATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQ  181 (263)
T ss_dssp             CCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHH
T ss_pred             cCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhccCHH
Confidence            577999999999999666554431  1234777787777666664

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.04  E-value=0.0078  Score=42.89  Aligned_cols=42  Identities=12%  Similarity=0.048  Sum_probs=27.2

Q ss_pred             cCCCeEEEEehhhhhHHHHHHhcC--CCCcEEecCCceeeeecC
Q psy5228           4 IKPNVSTLCIGLAASMGAFLLASG--TKGKRFSLPNSRIMIHQP   45 (114)
Q Consensus         4 ~~~~V~t~~~G~aaS~as~i~~ag--~~~~R~~~p~s~~miH~p   45 (114)
                      .+.|..|+++|.+.+.|...+++.  .....++-|++.+-+=.|
T Consensus       142 ~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igvMgp  185 (271)
T d2a7sa2         142 ATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGA  185 (271)
T ss_dssp             CCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCH
T ss_pred             CCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEeecCH
Confidence            467999999999999776655532  122356666665554443