Psyllid ID: psy5231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MQYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEccHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHcccccccEEEEEccEEEEEEEcccEEEEEEcccEEEEEEccccccccccccccEEEcccccccEEEHHEEccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHEEEEccEHHHHHHHHHHcccccEEEEEEcccccEccHHHHHHHHHHHHcccEEEEEccEEEEEEEEccEEEEEEEEccEEEEEccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Coil and Loop (DISEMBL)
MQYEFGILALIKPViiftdvigggnTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGnntvtgqlemndgyiktklnkktgytstnisgvfcrwrctrLYFIDKQLLALGSGCMAALDAQRYL
Flexible Loop (DISEMBL)
MQYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIignntvtgqlemNDGYIKTklnkktgytstnisgvfcRWRCTRLYFIDKQLLALGSGCMAALDAQRYL
Low Complexity Region (SEG)
MQYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL
Disordered region (IsUnstruct)
**YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAAL******
Disordered Region (DISOPRED)
***EFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL
Disordered Region (DISEMBL)
MQYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL
Disordered Region (DISPRO)
*QYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
P39916	320	Thioredoxin reductase OS=	yes	N/A	0.864	0.4	0.418	2e-25
P43788	318	Thioredoxin reductase OS=	yes	N/A	0.891	0.415	0.401	3e-24
Q93HX6	320	Glucosaminate ammonia-lya	yes	N/A	0.891	0.412	0.380	1e-23
Q9KSS4	318	Thioredoxin reductase OS=	yes	N/A	0.864	0.402	0.390	9e-23
P81433	319	Thioredoxin reductase OS=	yes	N/A	0.864	0.401	0.385	2e-22
P0A9P4	321	Thioredoxin reductase OS=	N/A	N/A	0.864	0.398	0.4	3e-22
P0A9P5	321	Thioredoxin reductase OS=	N/A	N/A	0.864	0.398	0.4	3e-22
Q1RJD8	310	Thioredoxin reductase OS=	yes	N/A	0.810	0.387	0.380	9e-19
P57399	319	Thioredoxin reductase OS=	yes	N/A	0.864	0.401	0.379	3e-18
Q92I02	310	Thioredoxin reductase OS=	yes	N/A	0.810	0.387	0.363	4e-18

>sp|P39916|TRXB_COXBU Thioredoxin reductase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=trxB PE=3 SV=2

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 94/165 (56%), Gaps = 37/165 (22%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGGNTAVEEALYLS+IA  VTLIHR +KLR EK+L  +L++KV EGK+ I   H++ +
Sbjct: 151 VVGGGNTAVEEALYLSHIASHVTLIHRRDKLRAEKMLSAQLIKKVEEGKVAIVWSHVIEE 210

Query: 80  IIGNNT-VTG----------------------------------QLEMND-GYIKTKLNK 103
           ++G++  VTG                                  QLEM++ GY++ K   
Sbjct: 211 VLGDDQGVTGVHLKHVKEEKTQDLTIDGLFIAIGHDPNTKIFKEQLEMDEAGYLRAKSGL 270

Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
           +   T+TNI GVF     T  +   + + A G GCMAALDA+RYL
Sbjct: 271 QGNATATNIPGVFAAGDVTD-HVYRQAITAAGMGCMAALDAERYL 314

Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 9

>sp|P43788|TRXB_HAEIN Thioredoxin reductase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trxB PE=3 SV=1

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 89/172 (51%), Gaps = 40/172 (23%)

Query: 12  KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDI 71
           KPV     VIGGGNTAVEEALYL+NIA  V LIHR +  R EKILIDRL +KV EGKI +
Sbjct: 147 KPV----GVIGGGNTAVEEALYLANIASTVHLIHRRDSFRAEKILIDRLYKKVEEGKIVL 202

Query: 72  KLKHIVHKIIGNNT-----------------------------------VTGQLEMNDGY 96
                + +++G+N                                      GQLE+N+GY
Sbjct: 203 HTDRTLDEVLGDNMGVTGLRLANTKTGEKEELKLDGLFVAIGHSPNTEIFQGQLELNNGY 262

Query: 97  IKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
           I  K       T+T++ GVF         +  + + + G+GCMAALDA+RYL
Sbjct: 263 IVVKSGLDGNATATSVEGVFAAGDVMDHNY-RQAITSAGTGCMAALDAERYL 313

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q93HX6|GLCAL_PSEFL Glucosaminate ammonia-lyase OS=Pseudomonas fluorescens PE=1 SV=2

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 89/171 (52%), Gaps = 39/171 (22%)

Query: 12  KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDI 71
           KPV     V+GGGNTAVEEALYL+NIA  VTLIHR E  R EKILID+L  +V EGKI +
Sbjct: 147 KPVA----VVGGGNTAVEEALYLANIASTVTLIHRRETFRAEKILIDKLNARVAEGKIIL 202

Query: 72  KLKHIVHKIIGNNT----------------------------------VTGQLEMNDGYI 97
           KL   + +++G+N                                     GQL + DGY+
Sbjct: 203 KLNANLDEVLGDNMGVTGARLKNNDGSFDELKVDGVFIAIGHTPNTSLFEGQLTLKDGYL 262

Query: 98  KTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
             +  +    T+T++ G+F        +   + + + G+GCMAALD +RYL
Sbjct: 263 VVQGGRDGNATATSVEGIFAAGDVAD-HVYRQAITSAGAGCMAALDTERYL 312

Catalyzes the conversion of D-glucosaminate (GlcNA) to 2-keto-3-deoxy-D-gluconic acid (KDGA) and ammonia.

Pseudomonas fluorescens (taxid: 294)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9KSS4|TRXB_VIBCH Thioredoxin reductase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=trxB PE=3 SV=1

 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 83/164 (50%), Gaps = 36/164 (21%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGGNTAVEEALYLSNIA +V L+HR +  R EKILIDRLM KV  G I +     + +
Sbjct: 151 VVGGGNTAVEEALYLSNIASEVHLVHRRDSFRSEKILIDRLMDKVANGNIVLHTHRTLDE 210

Query: 80  IIGNNT-----------------------------------VTGQLEMNDGYIKTKLNKK 104
           ++G+                                       GQLEM +GYI  K   +
Sbjct: 211 VLGDEMGVTGVRLKDTQSDMTENLDVMGVFIAIGHQPNSQIFEGQLEMKNGYIVVKSGLE 270

Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              T T+I GVF         +  + + + G+GCMAALDA+RYL
Sbjct: 271 GNATQTSIEGVFAAGDVMDHNY-RQAITSAGTGCMAALDAERYL 313

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|P81433|TRXB_BUCAP Thioredoxin reductase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=trxB PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 81/166 (48%), Gaps = 38/166 (22%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGGNTA+EE LYLSN  KK+ LIHR    + EKILIDRL++ V   K+ + L   +  
Sbjct: 151 VVGGGNTAIEETLYLSNFVKKIYLIHRRNNFKAEKILIDRLLKIVKTKKVILHLNSTIED 210

Query: 80  IIGNNT-------------------------------------VTGQLEMNDGYIKTKLN 102
           I+GNN                                       T QL+M DGYIK K  
Sbjct: 211 ILGNNKGVTHLLIKNKNLKEKKKLKIAVSGLFVAIGYIPNTDIFTDQLKMKDGYIKIKKG 270

Query: 103 KKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
               YT TNI GVF        +   + + +  SGCMAALD++RYL
Sbjct: 271 THGNYTQTNIPGVFAAGDVID-HVYRQAITSSASGCMAALDSERYL 315

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|P0A9P4|TRXB_ECOLI Thioredoxin reductase OS=Escherichia coli (strain K12) GN=trxB PE=1 SV=2

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA +V LIHR +  R EKILI RLM KV  G I +     + +
Sbjct: 151 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 210

Query: 80  IIGN----------------------------------NTV--TGQLEMNDGYIKTKLNK 103
           + G+                                  NT    GQLE+ +GYIK +   
Sbjct: 211 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 270

Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
               T T+I GVF        +   + + + G+GCMAALDA+RYL
Sbjct: 271 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 314

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|P0A9P5|TRXB_ECO57 Thioredoxin reductase OS=Escherichia coli O157:H7 GN=trxB PE=3 SV=2

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA +V LIHR +  R EKILI RLM KV  G I +     + +
Sbjct: 151 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 210

Query: 80  IIGN----------------------------------NTV--TGQLEMNDGYIKTKLNK 103
           + G+                                  NT    GQLE+ +GYIK +   
Sbjct: 211 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 270

Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
               T T+I GVF        +   + + + G+GCMAALDA+RYL
Sbjct: 271 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 314

Escherichia coli O157:H7 (taxid: 83334)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q1RJD8|TRXB_RICBR Thioredoxin reductase OS=Rickettsia bellii (strain RML369-C) GN=trxB PE=3 SV=1

 Score = 92.4 bits (228), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 87/168 (51%), Gaps = 48/168 (28%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGGN+AVEEALYL+N A KVT++HR +  R EKIL +RL +     KI +   H+V +
Sbjct: 150 VVGGGNSAVEEALYLTNHASKVTIVHRRDNFRAEKILQERLFKNP---KISVIWDHVVEE 206

Query: 80  IIGNN---TVTG----------------------------------QLEM-NDGYIKTKL 101
           I+GNN   +VTG                                  Q+ M ND YI T  
Sbjct: 207 IVGNNNPKSVTGVKIQNVHTKETSLVNCSGVFVAIGHKPNTALFAEQVTMDNDNYIIT-- 264

Query: 102 NKKTGYTSTNISGVFCRWRCT-RLYFIDKQLLALGSGCMAALDAQRYL 148
               G T TNI GVF       ++Y   + + A G+GCMAAL+A+++L
Sbjct: 265 --TPGSTKTNIEGVFAAGDVQDKIY--RQAITAAGTGCMAALEAEKFL 308

Rickettsia bellii (strain RML369-C) (taxid: 336407)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|P57399|TRXB_BUCAI Thioredoxin reductase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=trxB PE=3 SV=1

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 85/166 (51%), Gaps = 38/166 (22%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGGNTA+EE LYLSN  KKV LIHR    R EKIL+DRL +K+   KI I L  IV  
Sbjct: 151 VVGGGNTAIEETLYLSNFVKKVHLIHRGINFRAEKILLDRLEKKIKSQKIIIYLNSIVKN 210

Query: 80  IIGNNT---------------------VTG----------------QLEMNDGYIKTKLN 102
           I+GN++                     V+G                +L+M DGYI+    
Sbjct: 211 ILGNSSGVTALLIEQKNSKEKTESKIQVSGLFVAIGYTPNTNIFVNKLKMKDGYIQVTRQ 270

Query: 103 KKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
           +   YT T+I G+F        +   + + +  SGCMAALD++RY+
Sbjct: 271 EHGNYTQTSIPGIFAAGDVID-HVYRQAITSSASGCMAALDSERYI 315

Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q92I02|TRXB_RICCN Thioredoxin reductase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=trxB PE=3 SV=1

 Score = 90.5 bits (223), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 87/168 (51%), Gaps = 48/168 (28%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGGN+AVEEALYL+N A KVT++HR +  R EKIL DRL +     KI +   H+V +
Sbjct: 150 VVGGGNSAVEEALYLTNHANKVTIVHRRDSFRAEKILQDRLFKN---SKISVIWDHVVDE 206

Query: 80  IIGNNT-------------------------------------VTGQLEM-NDGYIKTKL 101
           I+G+N                                       TGQ+ M +D YI T  
Sbjct: 207 IVGSNKPKSVTGVKIQNVHTKEISLLNCSGVFIAIGHAPNTGLFTGQIVMDDDNYIIT-- 264

Query: 102 NKKTGYTSTNISGVFCRWRCT-RLYFIDKQLLALGSGCMAALDAQRYL 148
             K+G T T++ GVF       ++Y   + + A G+GCMAAL+A+++L
Sbjct: 265 --KSGTTRTSVEGVFAAGDVQDKIY--RQAVTAAGTGCMAALEAEKFL 308

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
134094251	317	thioredoxin reductase, FAD/NAD(P)-bindin	0.864	0.403	0.457	8e-29
398837131	317	thioredoxin-disulfide reductase [Herbasp	0.864	0.403	0.432	1e-28
152980722	317	thioredoxin reductase [Janthinobacterium	0.864	0.403	0.445	3e-28
399020195	317	thioredoxin-disulfide reductase [Herbasp	0.864	0.403	0.432	5e-28
330815816	320	thioredoxin-disulfide reductase [Burkhol	0.864	0.4	0.439	8e-28
56479434	317	FAD-dependent pyridine nucleotide-disulf	0.864	0.403	0.426	2e-27
445495953	317	thioredoxin-disulfide reductase TrxB [Ja	0.864	0.403	0.457	2e-27
300311227	318	thioredoxin reductase oxidoreductase [He	0.864	0.402	0.420	3e-27
114330804	317	thioredoxin reductase [Nitrosomonas eutr	0.864	0.403	0.426	3e-27
238026468	319	Thioredoxin-disulfide reductase [Burkhol	0.864	0.401	0.426	4e-27

>gi|134094251|ref|YP_001099326.1| thioredoxin reductase, FAD/NAD(P)-binding [Herminiimonas arsenicoxydans] gi|133738154|emb|CAL61199.1| thioredoxin reductase, FAD/NAD(P)-binding [Herminiimonas arsenicoxydans]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 95/164 (57%), Gaps = 36/164 (21%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA KVTL+HR +K R E ILIDRLM KV EGKI+IK  H + +
Sbjct: 151 VIGGGNTAVEEALYLSNIATKVTLVHRRDKFRAEAILIDRLMAKVAEGKIEIKYNHTLDE 210

Query: 80  IIGNNT-----------------------------------VTGQLEMNDGYIKTKLNKK 104
           I G+++                                     GQL+M++GYIKTK   +
Sbjct: 211 ITGDDSGVTGINIRSTTDDSITAIKLHGVFIAIGHKPNTSIFEGQLDMHNGYIKTKTGLE 270

Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              TST++ GVF      + +   + + + G+GCMAALDAQRYL
Sbjct: 271 GMATSTSVPGVFAAGDV-QDHIYRQAVTSAGTGCMAALDAQRYL 313

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398837131|ref|ZP_10594442.1| thioredoxin-disulfide reductase [Herbaspirillum sp. YR522] gi|398209278|gb|EJM95956.1| thioredoxin-disulfide reductase [Herbaspirillum sp. YR522]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 95/164 (57%), Gaps = 36/164 (21%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA KVT+IHR +K R E ILIDRL+ KV EGKID+K  H + +
Sbjct: 151 VIGGGNTAVEEALYLSNIASKVTIIHRRDKFRAEPILIDRLLHKVTEGKIDVKWHHTLDE 210

Query: 80  IIGNNT-----------------------------------VTGQLEMNDGYIKTKLNKK 104
           ++G+++                                     GQL+M +GY+KT+   +
Sbjct: 211 VVGDDSGVTGIKIKSTQDGAITDIAVHGLFVAIGHKPNTTIFDGQLDMQNGYLKTRAGNE 270

Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              T+T+I GVF      + +   + + + G+GCMAALDAQRYL
Sbjct: 271 GFATATSIDGVFAAGDV-QDHIYRQAITSAGTGCMAALDAQRYL 313

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|152980722|ref|YP_001352843.1| thioredoxin reductase [Janthinobacterium sp. Marseille] gi|151280799|gb|ABR89209.1| thioredoxin reductase (NADPH) [Janthinobacterium sp. Marseille]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 94/164 (57%), Gaps = 36/164 (21%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA KVT++HR +K R E ILIDRLM KV EGKI++K    + +
Sbjct: 151 VIGGGNTAVEEALYLSNIANKVTVVHRRDKFRAEAILIDRLMAKVAEGKIEVKWNSTLEE 210

Query: 80  IIGNNT-----------------------------------VTGQLEMNDGYIKTKLNKK 104
           + G+++                                     GQLEMN+GYIKTK   +
Sbjct: 211 VTGDDSGVTGMTIKSTADGSITPIKLHGVFVAIGHKPNTSIFEGQLEMNNGYIKTKTGLE 270

Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              TST++ GVF      + +   + + + G+GCMAALDAQRYL
Sbjct: 271 GMATSTSVPGVFAAGDV-QDHVYRQAITSAGTGCMAALDAQRYL 313

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|399020195|ref|ZP_10722334.1| thioredoxin-disulfide reductase [Herbaspirillum sp. CF444] gi|398095847|gb|EJL86179.1| thioredoxin-disulfide reductase [Herbaspirillum sp. CF444]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 96/164 (58%), Gaps = 36/164 (21%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGGNTAVEEALYLSNIA KVT+IHR +K R E ILIDRL+ KV EGKI+IK  H + +
Sbjct: 151 VVGGGNTAVEEALYLSNIASKVTIIHRRDKFRAEPILIDRLLHKVTEGKIEIKWHHTLDE 210

Query: 80  IIGNNT-----------------------------------VTGQLEMNDGYIKTKLNKK 104
           + G+++                                     GQL+M++GYIKT+   +
Sbjct: 211 VTGDDSGVTGIRIKSTQDGSITPITLHGLFIAIGHKPNTGIFDGQLDMHNGYIKTRTGLE 270

Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              T+TN++GVF      + +   + + + G+GCMAALDAQRYL
Sbjct: 271 GFATATNVNGVFAAGDV-QDHIYRQAITSAGTGCMAALDAQRYL 313

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|330815816|ref|YP_004359521.1| thioredoxin-disulfide reductase [Burkholderia gladioli BSR3] gi|327368209|gb|AEA59565.1| Thioredoxin-disulfide reductase [Burkholderia gladioli BSR3]

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 93/164 (56%), Gaps = 36/164 (21%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYL+ IAKKVT+IHR +K R E ILIDRL++K  EGK++IK  H++ +
Sbjct: 151 VIGGGNTAVEEALYLTGIAKKVTVIHRRDKFRAEPILIDRLLEKEKEGKVEIKWNHVLDE 210

Query: 80  IIGNNT-----------------------------------VTGQLEMNDGYIKTKLNKK 104
           + G+++                                     GQLEM DGYI TK    
Sbjct: 211 VTGDDSGVTGVTIKHTGTGETEQLTLQGVFVAIGHKPNTDLFQGQLEMKDGYIVTKSGLA 270

Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              T+TNI GVF      + +   + + + G+GCMAALDAQRYL
Sbjct: 271 GNATATNIPGVFAAGDV-QDHIYRQAITSAGTGCMAALDAQRYL 313

Source: Burkholderia gladioli BSR3

Species: Burkholderia gladioli

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|56479434|ref|YP_161023.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Aromatoleum aromaticum EbN1] gi|56315477|emb|CAI10122.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Aromatoleum aromaticum EbN1]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 97/164 (59%), Gaps = 36/164 (21%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYL+NIAKKVT++HR EK R EKILID++M+KV  GKI++ L   + +
Sbjct: 150 VIGGGNTAVEEALYLANIAKKVTVVHRREKFRAEKILIDKMMEKVAAGKIELALNSTLDE 209

Query: 80  IIGNNT-----------------------------------VTGQLEMNDGYIKTKLNKK 104
           ++G+NT                                     GQLEM +GYI TK  ++
Sbjct: 210 VLGDNTGVTGMRVRDANTGATRDVALQGVFIAIGHKPNTDIFEGQLEMENGYIITKGGRE 269

Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              T+T+++GVF      + +   + + + G+GCMAALDA+RYL
Sbjct: 270 GDATATSVAGVFAAGDV-QDHIYRQAVTSAGTGCMAALDAERYL 312

Source: Aromatoleum aromaticum EbN1

Species: Aromatoleum aromaticum

Genus: Aromatoleum

Family: Rhodocyclaceae

Order: Rhodocyclales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|445495953|ref|ZP_21462997.1| thioredoxin-disulfide reductase TrxB [Janthinobacterium sp. HH01] gi|444792114|gb|ELX13661.1| thioredoxin-disulfide reductase TrxB [Janthinobacterium sp. HH01]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 94/164 (57%), Gaps = 36/164 (21%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGGNTAVEEALYLSNIA KVTLIHR +K R E ILIDRL  KV EGKI IK  H + +
Sbjct: 151 VVGGGNTAVEEALYLSNIATKVTLIHRRDKFRAEAILIDRLNAKVAEGKIVIKYNHTLQE 210

Query: 80  IIG--------------NNTVT---------------------GQLEMNDGYIKTKLNKK 104
           ++G              N  VT                     GQL+M++GYIKTK   +
Sbjct: 211 VLGDDSGVTGIKIASTDNGAVTDLTVHGLFIAIGHKPNTGIFEGQLDMHNGYIKTKTGTE 270

Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              T+T++ GVF      + +   + + + G+GCMAALDAQRYL
Sbjct: 271 GMATATSVPGVFAAGDV-QDHIYRQAITSAGTGCMAALDAQRYL 313

Source: Janthinobacterium sp. HH01

Species: Janthinobacterium sp. HH01

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] gi|124483392|emb|CAM32569.1| Thioredoxin reductase oxidoreductase protein [Herbaspirillum seropedicae] gi|300074012|gb|ADJ63411.1| thioredoxin reductase oxidoreductase protein [Herbaspirillum seropedicae SmR1]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 94/164 (57%), Gaps = 36/164 (21%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGGNTAVEEALYLSNIA KVT+IHR +K R E ILIDRL+ KV+EGKI I+  H + +
Sbjct: 152 VVGGGNTAVEEALYLSNIASKVTIIHRRDKFRAEPILIDRLLHKVSEGKIAIQWHHTLDE 211

Query: 80  IIGNNT-----------------------------------VTGQLEMNDGYIKTKLNKK 104
           ++G+++                                     GQL M +GY+KT+   +
Sbjct: 212 VVGDDSGVTGIKIKSTQDDAITEIPVHGLFIAIGHKPNTSIFEGQLSMQNGYLKTRTGTE 271

Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              T+T+I GVF      + +   + + + G+GCMAALDAQRYL
Sbjct: 272 GFATATSIDGVFAAGDV-QDHVYRQAITSAGTGCMAALDAQRYL 314

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|114330804|ref|YP_747026.1| thioredoxin reductase [Nitrosomonas eutropha C91] gi|114307818|gb|ABI59061.1| thioredoxin reductase [Nitrosomonas eutropha C91]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 96/164 (58%), Gaps = 36/164 (21%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA+KVT++HR +K R EKILID+LM+KV  GKI++ L H++ +
Sbjct: 151 VIGGGNTAVEEALYLSNIARKVTVVHRRDKFRSEKILIDKLMEKVQSGKIELALDHVLEE 210

Query: 80  IIGNNT-----------------------------------VTGQLEMNDGYIKTKLNKK 104
           + G+++                                     GQLEM +GYI T+   +
Sbjct: 211 VKGDDSGVTGVRIRHVRDDTARDLDLQGVFIAIGHHPNTDLFQGQLEMKNGYIITQGGNE 270

Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              T+T+I GVF      + +   + + + GSGCMAALDA+RYL
Sbjct: 271 GNATATSIPGVFAAGDV-QDHIYRQAVTSAGSGCMAALDAERYL 313

Source: Nitrosomonas eutropha C91

Species: Nitrosomonas eutropha

Genus: Nitrosomonas

Family: Nitrosomonadaceae

Order: Nitrosomonadales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|238026468|ref|YP_002910699.1| Thioredoxin-disulfide reductase [Burkholderia glumae BGR1] gi|237875662|gb|ACR27995.1| Thioredoxin-disulfide reductase [Burkholderia glumae BGR1]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 93/164 (56%), Gaps = 36/164 (21%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYL+ IAKKVT+IHR +K R E ILIDRL++K  EGK++IK  H++ +
Sbjct: 150 VIGGGNTAVEEALYLTGIAKKVTVIHRRDKFRAEPILIDRLLEKEKEGKVEIKWNHVLDE 209

Query: 80  IIGNNT-----------------------------------VTGQLEMNDGYIKTKLNKK 104
           + G+++                                     GQLEM DGYI TK    
Sbjct: 210 VTGDDSGVTGVRIKHTGTGETEQIALQGVFVAIGHKPNTDIFQGQLEMKDGYIVTKSGLA 269

Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              T+T++ GVF      + +   + + + G+GCMAALDAQRYL
Sbjct: 270 GNATATSVPGVFAAGDV-QDHIYRQAITSAGTGCMAALDAQRYL 312

Source: Burkholderia glumae BGR1

Species: Burkholderia glumae

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TIGR_CMR|GSU_0488	316	GSU_0488 "thioredoxin reductas	0.466	0.218	0.585	5.3e-30
TIGR_CMR|CBU_1193	320	CBU_1193 "thioredoxin reductas	0.466	0.215	0.585	8.6e-28
UNIPROTKB|Q9KSS4	318	trxB "Thioredoxin reductase" [	0.466	0.216	0.571	1.9e-25
TIGR_CMR|VC_1182	318	VC_1182 "thioredoxin reductase	0.466	0.216	0.571	1.9e-25
UNIPROTKB|P0A9P4	321	trxB "thioredoxin reductase mo	0.466	0.214	0.585	1.1e-24
TIGR_CMR|CPS_2762	315	CPS_2762 "thioredoxin-disulfid	0.466	0.219	0.571	3.4e-24
TIGR_CMR|NSE_0558	314	NSE_0558 "thioredoxin-disulfid	0.445	0.210	0.486	4.3e-19
TIGR_CMR|SO_2303	317	SO_2303 "thioredoxin reductase	0.601	0.280	0.510	1.2e-16
UNIPROTKB|P52214	335	trxB "Thioredoxin reductase" [	0.479	0.211	0.44	1.3e-16
TIGR_CMR|BA_5387	318	BA_5387 "thioredoxin reductase	0.486	0.226	0.44	2.6e-14

TIGR_CMR|GSU_0488 GSU_0488 "thioredoxin reductase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 212 (79.7 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 41/70 (58%), Positives = 54/70 (77%)

Query:    20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
             VIGGGNTAVEEALYLSNIA  VTL+HR +KLR EKIL D+L++K   G + I+  H++ +
Sbjct:   150 VIGGGNTAVEEALYLSNIASHVTLVHRRDKLRAEKILADKLIEKTRGGNVTIEWNHVLDE 209

Query:    80 IIGNNT-VTG 88
             ++G+   VTG
Sbjct:   210 VLGDQAGVTG 219

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS

TIGR_CMR|CBU_1193 CBU_1193 "thioredoxin reductase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 208 (78.3 bits), Expect = 8.6e-28, Sum P(2) = 8.6e-28
 Identities = 41/70 (58%), Positives = 56/70 (80%)

Query:    20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
             V+GGGNTAVEEALYLS+IA  VTLIHR +KLR EK+L  +L++KV EGK+ I   H++ +
Sbjct:   151 VVGGGNTAVEEALYLSHIASHVTLIHRRDKLRAEKMLSAQLIKKVEEGKVAIVWSHVIEE 210

Query:    80 IIGNNT-VTG 88
             ++G++  VTG
Sbjct:   211 VLGDDQGVTG 220

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS

GO:0006739 "NADP metabolic process" evidence=ISS

UNIPROTKB|Q9KSS4 trxB "Thioredoxin reductase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 192 (72.6 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
             V+GGGNTAVEEALYLSNIA +V L+HR +  R EKILIDRLM KV  G I +     + +
Sbjct:   151 VVGGGNTAVEEALYLSNIASEVHLVHRRDSFRSEKILIDRLMDKVANGNIVLHTHRTLDE 210

Query:    80 IIGNNT-VTG 88
             ++G+   VTG
Sbjct:   211 VLGDEMGVTG 220

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS

TIGR_CMR|VC_1182 VC_1182 "thioredoxin reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 192 (72.6 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
             V+GGGNTAVEEALYLSNIA +V L+HR +  R EKILIDRLM KV  G I +     + +
Sbjct:   151 VVGGGNTAVEEALYLSNIASEVHLVHRRDSFRSEKILIDRLMDKVANGNIVLHTHRTLDE 210

Query:    80 IIGNNT-VTG 88
             ++G+   VTG
Sbjct:   211 VLGDEMGVTG 220

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS

UNIPROTKB|P0A9P4 trxB "thioredoxin reductase monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 187 (70.9 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
 Identities = 41/70 (58%), Positives = 48/70 (68%)

Query:    20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
             VIGGGNTAVEEALYLSNIA +V LIHR +  R EKILI RLM KV  G I +     + +
Sbjct:   151 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 210

Query:    80 IIGNNT-VTG 88
             + G+   VTG
Sbjct:   211 VTGDQMGVTG 220

GO:0019430 "removal of superoxide radicals" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;IDA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|CPS_2762 CPS_2762 "thioredoxin-disulfide reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 189 (71.6 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query:    20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
             V+GGGNTAVEEALYLSNIA +V LIHR +  R EKIL DRL +KV  G I +     + +
Sbjct:   150 VVGGGNTAVEEALYLSNIASEVHLIHRRDTFRSEKILTDRLYEKVANGNIVLHTDRTLDE 209

Query:    80 IIGNNT-VTG 88
             ++G+N  VTG
Sbjct:   210 VLGDNMGVTG 219

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS

TIGR_CMR|NSE_0558 NSE_0558 "thioredoxin-disulfide reductase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 154 (59.3 bits), Expect = 4.3e-19, Sum P(2) = 4.3e-19
 Identities = 35/72 (48%), Positives = 49/72 (68%)

Query:    20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
             VIGGGNTAVEEALYL+  AKKV L+HR E+LR E +L +RL       K+++    ++ +
Sbjct:   153 VIGGGNTAVEEALYLTRHAKKVYLLHRRERLRAETVLQERLFANA---KVELIWNSVLDE 209

Query:    80 IIGNNT---VTG 88
             I+G ++   VTG
Sbjct:   210 ILGRDSPPEVTG 221

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS

TIGR_CMR|SO_2303 SO_2303 "thioredoxin reductase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 206 (77.6 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 50/98 (51%), Positives = 61/98 (62%)

Query:    20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
             VIGGGNTAVEEALYLSNIA +V LIHR +  R EKILIDRLM KV  G I + L   + +
Sbjct:   151 VIGGGNTAVEEALYLSNIAAEVHLIHRRDTFRSEKILIDRLMDKVANGNIILHLNQTMDE 210

Query:    80 IIGNNT-VTGQLEMNDGYIKTKLNKKTGYTSTNISGVF 116
             ++G+   VTG        +K K  K    T   ++GVF
Sbjct:   211 VVGDAMGVTG--------LKMKSTKDGAITDLAVAGVF 240

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS

UNIPROTKB|P52214 trxB "Thioredoxin reductase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 151 (58.2 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 33/75 (44%), Positives = 47/75 (62%)

Query:    20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
             VIGGG++A+EEA +L+  A+ VTL+HR ++ R  KI++DR     N  KI     H V  
Sbjct:   160 VIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRAR---NNDKIRFLTNHTVVA 216

Query:    80 IIGNNTVTGQLEMND 94
             + G+ TVTG L + D
Sbjct:   217 VDGDTTVTG-LRVRD 230

GO:0001666 "response to hypoxia" evidence=IEP

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IDA;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045454 "cell redox homeostasis" evidence=IDA;TAS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0051701 "interaction with host" evidence=TAS

GO:0052572 "response to host immune response" evidence=TAS

GO:0070402 "NADPH binding" evidence=IDA

TIGR_CMR|BA_5387 BA_5387 "thioredoxin reductase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 148 (57.2 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
 Identities = 33/75 (44%), Positives = 47/75 (62%)

Query:    20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
             VIGGG++AVEE ++L+  A KVT++HR + LR +KIL DR  Q  NE K+D    H + +
Sbjct:   150 VIGGGDSAVEEGVFLTRFASKVTIVHRRDTLRAQKILQDRAFQ--NE-KVDFIWNHTIKE 206

Query:    80 IIGNNTVTGQLEMND 94
             I   N   G + + D
Sbjct:   207 INEANGKVGSVTLVD 221

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	148
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	1e-33
PRK10262	321	PRK10262, PRK10262, thioredoxin reductase; Provisi	3e-27
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	1e-24
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	2e-11
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	9e-11
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	5e-10
TIGR03143	555	TIGR03143, AhpF_homolog, putative alkyl hydroperox	2e-09
COG3634	520	COG3634, AhpF, Alkyl hydroperoxide reductase, larg	7e-09
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-08
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	5e-06
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	0.001
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	0.002

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score =  119 bits (300), Expect = 1e-33
 Identities = 60/173 (34%), Positives = 83/173 (47%), Gaps = 50/173 (28%)

Query: 12  KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDI 71
           K V     V+GGG++A+EEALYL+ IAKKVTL+HR +K R EKIL+DRL +      I+ 
Sbjct: 141 KEVA----VVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLKKNPK---IEF 193

Query: 72  KLKHIVHKIIGNNTVTG----------------------------------QLEMN-DGY 96
                V +I+G+N V G                                   LE++ +GY
Sbjct: 194 LWNSTVKEIVGDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHEPNTELLKGLLELDENGY 253

Query: 97  IKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
           I T          T++ GVF         +  +Q + A G GC+AAL A+RYL
Sbjct: 254 IVTD-----EGMRTSVPGVFAAGDVRDKGY--RQAVTAAGDGCIAALSAERYL 299

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional

 Score =  103 bits (257), Expect = 3e-27
 Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA +V LIHR +  R EKILI RLM KV  G I +     + +
Sbjct: 151 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 210

Query: 80  IIGN----------------------------------NTVT--GQLEMNDGYIKTKLNK 103
           + G+                                  NT    GQLE+ +GYIK +   
Sbjct: 211 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 270

Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
               T T+I GVF        +   + + + G+GCMAALDA+RYL
Sbjct: 271 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 314

Length = 321

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 95.8 bits (239), Expect = 1e-24
 Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 50/166 (30%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGG++AVEEALYLS IAKKVTL+HR ++ R E+IL++RL + V   KI++    +V +
Sbjct: 148 VIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNV---KIEVLTNTVVKE 204

Query: 80  IIGNNTVTGQLE---------------------------------MNDGYIKTKLNKKTG 106
           I+G++     L+                                   +GYI         
Sbjct: 205 ILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVV-----DE 259

Query: 107 YTSTNISGVF----CRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              T++ G+F       +  R         A G G +AAL A+RYL
Sbjct: 260 EMETSVPGIFAAGDVADKNGRQI-----ATAAGDGAIAALSAERYL 300

Length = 305

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 56.1 bits (136), Expect = 2e-11
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR------CEKILIDRLMQKVNEGKIDIKL 73
          V+GGG   +E A  L+ +  KVT++ R ++L         KIL ++L +      I++ L
Sbjct: 4  VVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKN----GIEVLL 59

Query: 74 KHIVHKIIGNNT-VTGQLEMNDG 95
             V +I GN   V  +L+  DG
Sbjct: 60 NTTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 58.2 bits (142), Expect = 9e-11
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 41/163 (25%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGN+ VE A+ L+ I K VT++    +L+ +++L D+L    N   + I       +
Sbjct: 356 VIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPN---VTIITNAQTTE 412

Query: 80  IIGNNT-VTG------------QLEM-----------NDGYIK--TKLNK-------KTG 106
           + G+   VTG             LE+           N  ++K   +LN+         G
Sbjct: 413 VTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARG 472

Query: 107 YTSTNISGVFCRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
             +T++ GVF    CT + +  KQ++ A+G G  AAL A  YL
Sbjct: 473 --ATSVPGVFAAGDCTTVPY--KQIIIAMGEGAKAALSAFDYL 511

Length = 517

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 37/161 (22%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGN+ +E A+ L+ I + VT++   ++L+ +K+L D+L    N   +DI       +
Sbjct: 357 VIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKLKSLPN---VDILTSAQTTE 413

Query: 80  IIGN-NTVTG--QLEMNDGYIKT-----------------------KLNKK-----TGYT 108
           I+G+ + VTG    + N G  K                        +LN++         
Sbjct: 414 IVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERG 473

Query: 109 STNISGVFCRWRCTRLYFIDKQL-LALGSGCMAALDAQRYL 148
            T++ G+F     T + +  KQ+ +A+G G  AAL A  YL
Sbjct: 474 RTSVPGIFAAGDVTTVPY--KQIIIAMGEGAKAALSAFDYL 512

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 46/168 (27%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGG  A EEA++L+  A KVT+I R     C K++ +++    N  KI++K    + +
Sbjct: 148 VIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVK---NHPKIEVKFNTELKE 204

Query: 80  IIGN---------NTVTGQLEMND--------------GYI-KTKLNK------KTGYT- 108
             G+         N VTG++                  GY   ++L K      K GY  
Sbjct: 205 ATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIP 264

Query: 109 -----STNISGVFCR--WRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
                 TN+ GV+     R   L    +Q++ A+  G +AA  A+RY+
Sbjct: 265 TNEDMETNVPGVYAAGDLRPKEL----RQVVTAVADGAIAATSAERYV 308

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555

>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 37/161 (22%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGN+ VE A+ L+ I + VTL+    +L+ + +L D+L    N   + I       +
Sbjct: 359 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPN---VTIITNAQTTE 415

Query: 80  IIGNNT-VTG------------QLEMNDGYIKTKLNKKTGYT------------------ 108
           + G+   VTG             LE+   +++  L   T +                   
Sbjct: 416 VKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARG 475

Query: 109 STNISGVFCRWRCTRLYFIDKQL-LALGSGCMAALDAQRYL 148
            TN+ GVF    CT + +  KQ+ +A+G G  A+L A  YL
Sbjct: 476 ETNVPGVFAAGDCTTVPY--KQIIIAMGEGAKASLSAFDYL 514

Length = 520

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGG   +E A  L+ + K+VT++ R ++L                 K+ + +  ++  
Sbjct: 147 VVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAALLEKLEKLLLGVTVLL-- 204

Query: 80  IIGNNTVTGQLEMNDGYIKTKLNKKTGY 107
                 V      +   ++ KL      
Sbjct: 205 ----VVVVVVKVGDGKVVEVKLGDGEEL 228

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKI---LIDRLMQKVNEGKIDIKLKHI 76
           V+GG N+AV+ AL L     +VT++HR +++    +   +   +  ++ EG I       
Sbjct: 157 VVGGSNSAVDAALELYRKGAEVTMVHRGDEVS-SSVKYWVRPDIENRIKEGSIKAYFNSR 215

Query: 77  VHKIIGNNTVTGQLEMNDGYIKT 99
           V + I  ++VT  LE  DG + T
Sbjct: 216 VKE-ITEDSVT--LETPDGEVHT 235

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNE 48
           VIGGG+TA++ AL L ++ K VT I R  
Sbjct: 171 VIGGGHTAIDAALNLLDLGKDVTWITRRP 199

Length = 202

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKHIV 77
           ++GGG   +E A   + +  KVT++ R +++    +  +   L +++ +G + I L   V
Sbjct: 178 IVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKV 237

Query: 78  HKIIGNN 84
             +   +
Sbjct: 238 TAVEKKD 244

Length = 454

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.94
KOG0404|consensus	322		99.92
PRK10262	321	thioredoxin reductase; Provisional	99.91
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.9
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.9
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.86
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.86
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.86
PLN02507	499	glutathione reductase	99.86
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.86
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.85
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.85
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.85
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.85
PRK14727	479	putative mercuric reductase; Provisional	99.85
TIGR02053	463	MerA mercuric reductase. This model represents the	99.85
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.85
PRK13748	561	putative mercuric reductase; Provisional	99.85
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.85
PRK06116	450	glutathione reductase; Validated	99.85
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.84
PRK06370	463	mercuric reductase; Validated	99.84
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.84
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.84
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.84
PRK14694	468	putative mercuric reductase; Provisional	99.84
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.84
PTZ00058	561	glutathione reductase; Provisional	99.83
PLN02546	558	glutathione reductase	99.83
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.83
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.83
PRK12831	464	putative oxidoreductase; Provisional	99.83
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.82
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.82
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.82
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.82
PRK07846	451	mycothione reductase; Reviewed	99.81
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.81
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.81
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.81
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.8
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.8
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.8
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.79
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.79
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.78
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.78
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.78
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.78
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.78
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.78
PTZ00052	499	thioredoxin reductase; Provisional	99.78
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.77
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.76
KOG0405|consensus	478		99.75
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.75
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.73
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.73
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.73
PRK13984	604	putative oxidoreductase; Provisional	99.71
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.71
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.71
KOG1335|consensus	506		99.69
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.68
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.68
KOG1336|consensus	478		99.65
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.64
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.62
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.61
KOG4716|consensus	503		99.61
KOG2495|consensus	491		99.57
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.56
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.46
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.42
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.42
KOG0399|consensus	2142		99.39
PLN02852	491	ferredoxin-NADP+ reductase	99.31
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.26
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.19
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.01
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.92
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.73
KOG1346|consensus	659		98.53
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.49
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.48
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.39
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.3
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.3
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.27
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.25
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.25
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.25
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.23
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.23
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.23
PRK12831	464	putative oxidoreductase; Provisional	98.21
COG2081	408	Predicted flavoproteins [General function predicti	98.21
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.21
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.17
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.15
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.15
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.15
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.15
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.13
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.13
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.12
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.12
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.11
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.1
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.08
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.07
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.04
PLN02852	491	ferredoxin-NADP+ reductase	98.03
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.98
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.98
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.94
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.93
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.92
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.87
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.86
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.84
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.83
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.83
PRK13984	604	putative oxidoreductase; Provisional	97.83
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.79
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.78
KOG0029|consensus	501		97.76
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.76
PTZ00188	506	adrenodoxin reductase; Provisional	97.76
PRK07233	434	hypothetical protein; Provisional	97.75
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.74
PRK06475	400	salicylate hydroxylase; Provisional	97.72
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	97.7
PRK09126	392	hypothetical protein; Provisional	97.7
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.69
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.69
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.69
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.68
PRK05868	372	hypothetical protein; Validated	97.68
COG3349	485	Uncharacterized conserved protein [Function unknow	97.67
PLN02268	435	probable polyamine oxidase	97.67
PRK06847	375	hypothetical protein; Provisional	97.67
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.66
PRK07236	386	hypothetical protein; Provisional	97.65
PRK06753	373	hypothetical protein; Provisional	97.65
KOG3851|consensus	446		97.65
PRK08244	493	hypothetical protein; Provisional	97.65
PRK06184	502	hypothetical protein; Provisional	97.64
PRK08275	554	putative oxidoreductase; Provisional	97.64
PRK10262	321	thioredoxin reductase; Provisional	97.64
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.64
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.63
PRK07045	388	putative monooxygenase; Reviewed	97.63
PRK08163	396	salicylate hydroxylase; Provisional	97.62
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.6
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.59
PRK06126	545	hypothetical protein; Provisional	97.59
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.58
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.57
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.57
PRK07588	391	hypothetical protein; Provisional	97.56
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.56
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.56
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.55
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.55
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.55
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.55
PRK08013	400	oxidoreductase; Provisional	97.52
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.52
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.51
KOG1399|consensus	448		97.5
PRK10157	428	putative oxidoreductase FixC; Provisional	97.5
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.5
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.5
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.5
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.49
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.48
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.48
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.48
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.47
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.46
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.45
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.45
PRK07538	413	hypothetical protein; Provisional	97.45
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.44
PLN02576	496	protoporphyrinogen oxidase	97.44
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.44
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.44
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.44
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.43
PRK10015	429	oxidoreductase; Provisional	97.43
PRK07208	479	hypothetical protein; Provisional	97.42
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.42
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.42
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.41
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.41
PRK06185	407	hypothetical protein; Provisional	97.4
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.4
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.4
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.4
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.39
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.38
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.37
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.37
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.36
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.36
PRK11445	351	putative oxidoreductase; Provisional	97.36
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.36
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.36
KOG2614|consensus	420		97.35
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.33
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.33
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.32
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.32
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.32
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.31
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.3
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.3
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.3
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.3
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.3
PRK06116	450	glutathione reductase; Validated	97.28
PRK06834	488	hypothetical protein; Provisional	97.27
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.27
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.25
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.25
PRK06370	463	mercuric reductase; Validated	97.24
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.23
PLN02529	738	lysine-specific histone demethylase 1	97.23
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.22
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.22
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.21
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.21
PLN02985	514	squalene monooxygenase	97.21
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.2
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.2
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.2
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.19
PRK07190	487	hypothetical protein; Provisional	97.18
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.17
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.17
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.17
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.16
KOG2755|consensus	334		97.14
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.13
TIGR02053	463	MerA mercuric reductase. This model represents the	97.12
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.12
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.12
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.12
PLN02463	447	lycopene beta cyclase	97.1
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.09
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.09
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.08
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.07
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.07
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.07
PLN02487	569	zeta-carotene desaturase	97.03
KOG1298|consensus	509		97.01
PRK08294	634	phenol 2-monooxygenase; Provisional	97.0
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.98
PRK14727	479	putative mercuric reductase; Provisional	96.98
PRK08274	466	tricarballylate dehydrogenase; Validated	96.98
PTZ00367	567	squalene epoxidase; Provisional	96.98
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.97
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.96
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	96.95
PRK13748	561	putative mercuric reductase; Provisional	96.94
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.94
PRK07121	492	hypothetical protein; Validated	96.92
PLN02612	567	phytoene desaturase	96.92
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	96.92
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.91
PRK14694	468	putative mercuric reductase; Provisional	96.9
PTZ00052	499	thioredoxin reductase; Provisional	96.88
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.88
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.87
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.87
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	96.87
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	96.87
PLN02676	487	polyamine oxidase	96.85
KOG1399|consensus	448		96.85
PRK06996	398	hypothetical protein; Provisional	96.82
PRK09077	536	L-aspartate oxidase; Provisional	96.82
PLN02661	357	Putative thiazole synthesis	96.81
PRK05257	494	malate:quinone oxidoreductase; Validated	96.81
PLN03000	881	amine oxidase	96.81
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	96.8
PLN02546	558	glutathione reductase	96.8
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.79
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.77
KOG2415|consensus	621		96.76
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.75
PRK13977	576	myosin-cross-reactive antigen; Provisional	96.75
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	96.75
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.74
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	96.73
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	96.73
PTZ00383	497	malate:quinone oxidoreductase; Provisional	96.72
PLN02697	529	lycopene epsilon cyclase	96.72
PTZ00058	561	glutathione reductase; Provisional	96.72
PLN02568	539	polyamine oxidase	96.72
PRK12842	574	putative succinate dehydrogenase; Reviewed	96.72
PRK08401	466	L-aspartate oxidase; Provisional	96.72
PRK08071	510	L-aspartate oxidase; Provisional	96.71
PRK07804	541	L-aspartate oxidase; Provisional	96.7
PRK13339	497	malate:quinone oxidoreductase; Reviewed	96.69
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.69
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.69
COG0579	429	Predicted dehydrogenase [General function predicti	96.68
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	96.68
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	96.66
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.66
PLN02507	499	glutathione reductase	96.65
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.63
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.63
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.61
KOG1800|consensus	468		96.56
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.55
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.55
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.54
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	96.54
PRK09897	534	hypothetical protein; Provisional	96.53
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	96.51
PRK07804	541	L-aspartate oxidase; Provisional	96.51
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	96.49
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.48
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.48
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	96.48
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.48
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	96.47
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.46
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.45
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.44
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	96.42
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.42
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.39
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.38
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	96.36
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	96.36
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.36
PRK07512	513	L-aspartate oxidase; Provisional	96.36
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	96.35
PRK08401	466	L-aspartate oxidase; Provisional	96.33
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	96.33
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	96.31
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	96.3
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.3
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	96.27
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.26
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.26
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	96.26
KOG0685|consensus	498		96.26
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.24
COG2907	447	Predicted NAD/FAD-binding protein [General functio	96.23
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.2
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.17
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	96.16
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	96.16
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	96.16
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.16
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.14
PRK06175	433	L-aspartate oxidase; Provisional	96.14
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.14
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.11
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.1
PLN02815	594	L-aspartate oxidase	96.1
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	96.1
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.09
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.08
PRK08275	554	putative oxidoreductase; Provisional	96.05
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.04
PLN02815	594	L-aspartate oxidase	96.03
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.03
PRK06175	433	L-aspartate oxidase; Provisional	96.01
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	96.0
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	95.98
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	95.97
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.96
PRK02106	560	choline dehydrogenase; Validated	95.93
KOG1276|consensus	491		95.91
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.9
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	95.88
PRK12839	572	hypothetical protein; Provisional	95.88
PRK07395	553	L-aspartate oxidase; Provisional	95.88
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.87
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.87
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	95.86
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	95.86
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.85
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.84
PRK07395	553	L-aspartate oxidase; Provisional	95.83
PLN02976	1713	amine oxidase	95.82
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.81
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	95.78
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	95.77
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.76
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	95.75
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.75
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	95.75
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	95.73
PRK08071	510	L-aspartate oxidase; Provisional	95.72
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	95.7
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	95.68
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	95.68
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.65
KOG1800|consensus	468		95.65
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.62
KOG2852|consensus	380		95.61
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.6
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	95.59
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.56
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	95.54
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.54
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.52
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.49
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.47
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.45
KOG2311|consensus	679		95.4
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	95.4
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	95.39
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	95.38
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	95.32
PRK09077	536	L-aspartate oxidase; Provisional	95.27
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.27
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.26
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.23
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.2
PRK11730	715	fadB multifunctional fatty acid oxidation complex	95.18
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.18
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.16
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.16
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.14
PRK08274	466	tricarballylate dehydrogenase; Validated	95.13
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	95.09
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	95.08
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	95.08
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	95.08
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	95.05
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.94
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.93
KOG0042|consensus	680		94.92
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.92
KOG0404|consensus	322		94.92
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	94.91
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	94.86
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	94.86
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.81
KOG1335|consensus	506		94.78
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	94.76
PRK07512	513	L-aspartate oxidase; Provisional	94.74
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	94.69
PLN02785	587	Protein HOTHEAD	94.63
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.63
PRK07846	451	mycothione reductase; Reviewed	94.62
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.6
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	94.59
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	94.58
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.56
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.54
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.53
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.51
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.51
KOG1336|consensus	478		94.5
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.5
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.49
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.49
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.47
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	94.45
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	94.45
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	94.43
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.43
PRK09496	453	trkA potassium transporter peripheral membrane com	94.41
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.39
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.37
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	94.36
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.36
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.3
PLN02494	477	adenosylhomocysteinase	94.25
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	94.24
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.2
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.16
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	94.14
PRK08306	296	dipicolinate synthase subunit A; Reviewed	94.12
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	94.11
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	94.09
PRK00536	262	speE spermidine synthase; Provisional	94.09
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	94.08
PRK10669	558	putative cation:proton antiport protein; Provision	94.05
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	94.02
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	93.96
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	93.93
KOG2853|consensus	509		93.85
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.84
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.81
PRK04148	134	hypothetical protein; Provisional	93.78
PRK13243	333	glyoxylate reductase; Reviewed	93.77
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.75
PRK10637	457	cysG siroheme synthase; Provisional	93.73
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.72

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.4e-26  Score=174.38  Aligned_cols=132  Identities=41%  Similarity=0.618  Sum_probs=114.9

Q ss_pred             hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231           3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      +|+| .+++|+|    +|||||++|+|.|++|++++++||+++|++.+++.+.+.+++++   ..+|++++++.+.++.+
T Consensus       136 ~cdg-~~~~k~v----~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~---~~~i~~~~~~~i~ei~G  207 (305)
T COG0492         136 TCDG-FFKGKDV----VVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKK---NVKIEVLTNTVVKEILG  207 (305)
T ss_pred             ecCc-cccCCeE----EEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHh---cCCeEEEeCCceeEEec
Confidence            5888 8999999    99999999999999999999999999999999998888888886   45999999999999887


Q ss_pred             CCe--------------------e------------ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchh
Q psy5231          83 NNT--------------------V------------TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDK  129 (148)
Q Consensus        83 ~~~--------------------~------------~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~  129 (148)
                      ++.                    |            .....++ .|+|.+|+.     ++||+|||||+||++..+ ++|
T Consensus       208 ~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~-----~~TsvpGifAaGDv~~~~-~rq  281 (305)
T COG0492         208 DDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEE-----METSVPGIFAAGDVADKN-GRQ  281 (305)
T ss_pred             CccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCC-----cccCCCCEEEeEeeccCc-ccE
Confidence            531                    0            0111134 489999999     999999999999999887 569


Q ss_pred             HHHHHHHHHHHHHHHHhhC
Q psy5231         130 QLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       130 ~~~A~~~G~~aA~~i~~~l  148 (148)
                      +.+|+++|.+||.++.+||
T Consensus       282 i~ta~~~G~~Aa~~a~~~l  300 (305)
T COG0492         282 IATAAGDGAIAALSAERYL  300 (305)
T ss_pred             EeehhhhHHHHHHHHHHHh
Confidence            9999999999999999986

>KOG0404|consensus

Probab=99.92  E-value=4.8e-25  Score=158.92  Aligned_cols=133  Identities=38%  Similarity=0.640  Sum_probs=116.2

Q ss_pred             hhhhh--hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231           4 EFGIL--ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKII   81 (148)
Q Consensus         4 ~~g~~--~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~   81 (148)
                      |.|..  |++|+.    +|||||++++|.|.+|.+.+++|++++|++.|+++..+.+++.+   +.+|++++++.+.+..
T Consensus       148 CDGaapifrnk~l----aVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~---npnI~v~~nt~~~ea~  220 (322)
T KOG0404|consen  148 CDGAAPIFRNKPL----AVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEK---NPNIEVLYNTVAVEAL  220 (322)
T ss_pred             ccCcchhhcCCee----EEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhc---CCCeEEEechhhhhhc
Confidence            55554  899999    99999999999999999999999999999999998888888876   8899999998877666


Q ss_pred             cCCe-----------------------------------eecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccc
Q psy5231          82 GNNT-----------------------------------VTGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLY  125 (148)
Q Consensus        82 ~~~~-----------------------------------~~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~  125 (148)
                      +++.                                   +..++++|. |+|.+.+.+    -.||+|++||+||+.+..
T Consensus       221 gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgt----s~TsvpG~FAAGDVqD~k  296 (322)
T KOG0404|consen  221 GDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGT----SLTSVPGVFAAGDVQDKK  296 (322)
T ss_pred             cCcccccceEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCc----ccccccceeeccccchHH
Confidence            5532                                   234678874 999998775    889999999999999887


Q ss_pred             cchhHHHHHHHHHHHHHHHHhhC
Q psy5231         126 FIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       126 ~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                       ++|..+|+++|++||+...+||
T Consensus       297 -yRQAvTaAgsGciaaldAe~yL  318 (322)
T KOG0404|consen  297 -YRQAVTAAGSGCIAALDAERYL  318 (322)
T ss_pred             -HHHHHhhhccchhhhhhHHHHh
Confidence             7899999999999999999987

>PRK10262 thioredoxin reductase; Provisional

Probab=99.91  E-value=6.8e-24  Score=162.85  Aligned_cols=141  Identities=47%  Similarity=0.712  Sum_probs=112.8

Q ss_pred             hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231           3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      ++.++...++++    +|||+|++|+|+|..|++++++||+++|.+.+..++.+.+.+++.|++.||++++++.+.++.+
T Consensus       138 ~~~~~~~~g~~v----vVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~  213 (321)
T PRK10262        138 TCDGFFYRNQKV----AVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTG  213 (321)
T ss_pred             cCCHHHcCCCEE----EEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEc
Confidence            456667778888    9999999999999999999999999999887766666777888888889999999998888765


Q ss_pred             CC------------------e------------------eecceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc
Q psy5231          83 NN------------------T------------------VTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF  126 (148)
Q Consensus        83 ~~------------------~------------------~~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~  126 (148)
                      +.                  .                  +...+.+++|+|.+|+.+..+.++|+.|+|||+|||++.+ 
T Consensus       214 ~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~-  292 (321)
T PRK10262        214 DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI-  292 (321)
T ss_pred             CCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcccccccCCCCEEECeeccCCC-
Confidence            42                  0                  0112344468899987210001899999999999999765 


Q ss_pred             chhHHHHHHHHHHHHHHHHhhC
Q psy5231         127 IDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       127 ~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ++++..|+++|.+||..|++||
T Consensus       293 ~~~~~~A~~~g~~Aa~~~~~~l  314 (321)
T PRK10262        293 YRQAITSAGTGCMAALDAERYL  314 (321)
T ss_pred             cceEEEEehhHHHHHHHHHHHH
Confidence            4688999999999999999986

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=4.6e-24  Score=162.23  Aligned_cols=132  Identities=33%  Similarity=0.497  Sum_probs=117.9

Q ss_pred             hhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231           4 EFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus         4 ~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      |.|.+|+||+|    +|||||++|+|+|..|+-.-.+||+++-.++++++.-+.+++..   -.|+.++++..-++|.++
T Consensus       347 CDGPLF~gK~V----AVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~s---l~Nv~ii~na~Ttei~Gd  419 (520)
T COG3634         347 CDGPLFKGKRV----AVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRS---LPNVTIITNAQTTEVKGD  419 (520)
T ss_pred             CCCcccCCceE----EEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHHhc---CCCcEEEecceeeEEecC
Confidence            78999999999    99999999999999999999999999999899888888888876   579999999999999887


Q ss_pred             Ce-----------------------------------eecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccc
Q psy5231          84 NT-----------------------------------VTGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFI  127 (148)
Q Consensus        84 ~~-----------------------------------~~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~  127 (148)
                      +.                                   +.+.+++++ |-|.+|..     ..||+|||||+|||+..+ +
T Consensus       420 g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~-----g~TsvpGvFAAGD~T~~~-y  493 (520)
T COG3634         420 GDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDAR-----GETNVPGVFAAGDCTTVP-Y  493 (520)
T ss_pred             CceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecC-----CCcCCCceeecCcccCCc-c
Confidence            42                                   122456664 88999999     999999999999999998 7


Q ss_pred             hhHHHHHHHHHHHHHHHHhhC
Q psy5231         128 DKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       128 ~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +|+.+|+++|..|+.+...||
T Consensus       494 KQIIIamG~GA~AaL~AFDyL  514 (520)
T COG3634         494 KQIIIAMGEGAKASLSAFDYL  514 (520)
T ss_pred             ceEEEEecCcchhhhhhhhhh
Confidence            999999999999999998886

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.90  E-value=1.3e-22  Score=161.77  Aligned_cols=126  Identities=21%  Similarity=0.338  Sum_probs=109.5

Q ss_pred             cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--e---
Q psy5231          13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--T---   85 (148)
Q Consensus        13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--~---   85 (148)
                      ++|++++|||||.+|+|+|..++++|.+||+++|.+++..  ++++.+.+.+.|++.++++++++.+++++.++  .   
T Consensus       171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~  250 (454)
T COG1249         171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVT  250 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEE
Confidence            7899999999999999999999999999999999998854  78899999999988889999999998886432  1   


Q ss_pred             ----------------------------e-ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHH
Q psy5231          86 ----------------------------V-TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALG  135 (148)
Q Consensus        86 ----------------------------~-~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~  135 (148)
                                                  + ..++++++ |+|.||..     ++|++|+|||+|||++.+  ...+.|..
T Consensus       251 ~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~-----~~Tnvp~IyA~GDV~~~~--~Lah~A~~  323 (454)
T COG1249         251 LEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQ-----MTTNVPGIYAIGDVIGGP--MLAHVAMA  323 (454)
T ss_pred             EecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCc-----cccCCCCEEEeeccCCCc--ccHhHHHH
Confidence                                        0 12567775 89999965     888899999999998887  48899999


Q ss_pred             HHHHHHHHHH
Q psy5231         136 SGCMAALDAQ  145 (148)
Q Consensus       136 ~G~~aA~~i~  145 (148)
                      ||+.||.+|.
T Consensus       324 eg~iaa~~i~  333 (454)
T COG1249         324 EGRIAAENIA  333 (454)
T ss_pred             HHHHHHHHHh
Confidence            9999999986

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.86  E-value=9.5e-21  Score=151.65  Aligned_cols=125  Identities=16%  Similarity=0.222  Sum_probs=102.6

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C-----
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N-----   84 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~-----   84 (148)
                      .+++++|||||++|+|+|..|+++|++||++++.+.+..  ++++.+.+++.|++.||++++++.++++..+  +     
T Consensus       165 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~  244 (450)
T TIGR01421       165 LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIH  244 (450)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEE
Confidence            345669999999999999999999999999999876532  5667788888888899999999988887532  1     


Q ss_pred             -----e-------------------e--e-cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231          85 -----T-------------------V--T-GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS  136 (148)
Q Consensus        85 -----~-------------------~--~-~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~  136 (148)
                           .                   +  . .+++++ +|++.+|++     ++|++|+|||+|||++.+  ..+..|..+
T Consensus       245 ~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-----~~T~~p~IyAiGD~~~~~--~~~~~A~~~  317 (450)
T TIGR01421       245 FEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEY-----QNTNVPGIYALGDVVGKV--ELTPVAIAA  317 (450)
T ss_pred             ECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCC-----CcCCCCCEEEEEecCCCc--ccHHHHHHH
Confidence                 1                   0  0 134455 378999998     999999999999999876  578899999


Q ss_pred             HHHHHHHHH
Q psy5231         137 GCMAALDAQ  145 (148)
Q Consensus       137 G~~aA~~i~  145 (148)
                      |+.||.+|.
T Consensus       318 g~~aa~~i~  326 (450)
T TIGR01421       318 GRKLSERLF  326 (450)
T ss_pred             HHHHHHHHh
Confidence            999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.86  E-value=3e-21  Score=156.89  Aligned_cols=132  Identities=33%  Similarity=0.504  Sum_probs=105.7

Q ss_pred             hhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231           4 EFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus         4 ~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      +.+..++||+|    +|||||++|+|+|..|+..+++||++++.+.+.....+.+++.+   ..||++++++.+.++.++
T Consensus       344 ~~~~~~~gk~V----vVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~---~~gI~i~~~~~v~~i~~~  416 (517)
T PRK15317        344 CDGPLFKGKRV----AVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRS---LPNVTIITNAQTTEVTGD  416 (517)
T ss_pred             cCchhcCCCEE----EEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhc---CCCcEEEECcEEEEEEcC
Confidence            34555678888    99999999999999999999999999998877655444444442   369999999988887654


Q ss_pred             C-e----------------------------------eecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccc
Q psy5231          84 N-T----------------------------------VTGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFI  127 (148)
Q Consensus        84 ~-~----------------------------------~~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~  127 (148)
                      + .                                  +...+.++. |+|.+|+.     ++|++|+|||+|||+..+ +
T Consensus       417 ~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~-----l~Ts~p~IyAaGDv~~~~-~  490 (517)
T PRK15317        417 GDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDAR-----GATSVPGVFAAGDCTTVP-Y  490 (517)
T ss_pred             CCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcC-----CCCCCCCEEECccccCCC-C
Confidence            1 0                                  011244554 88999998     999999999999999876 5


Q ss_pred             hhHHHHHHHHHHHHHHHHhhC
Q psy5231         128 DKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       128 ~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +++..|+++|..||.++.+||
T Consensus       491 k~~~~A~~eG~~Aa~~~~~~l  511 (517)
T PRK15317        491 KQIIIAMGEGAKAALSAFDYL  511 (517)
T ss_pred             CEEEEhhhhHHHHHHHHHHHH
Confidence            789999999999999999875

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.86  E-value=2.2e-21  Score=157.56  Aligned_cols=130  Identities=31%  Similarity=0.494  Sum_probs=101.9

Q ss_pred             hhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhc-CCcEEEcCceEEEEecC
Q psy5231           5 FGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNE-GKIDIKLKHIVHKIIGN   83 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~-~~v~i~~~~~v~~i~~~   83 (148)
                      .+..+.++++    +|||||++|+|+|..|+.++++||++++.+.+..+..+    .+.|++ .||++++++.+.++.++
T Consensus       346 ~~~~~~~k~V----vViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l----~~~l~~~~gV~i~~~~~v~~i~~~  417 (515)
T TIGR03140       346 DGPFFKGKDV----AVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVL----QDKLKSLPNVDILTSAQTTEIVGD  417 (515)
T ss_pred             ChhhcCCCEE----EEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHH----HHHHhcCCCCEEEECCeeEEEEcC
Confidence            3444567777    99999999999999999999999999998877543333    333434 69999999888777543


Q ss_pred             C-e----------------------------------eecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccc
Q psy5231          84 N-T----------------------------------VTGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFI  127 (148)
Q Consensus        84 ~-~----------------------------------~~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~  127 (148)
                      + .                                  +...++++ .|+|.+|++     ++|+.|+|||+|||+..+ +
T Consensus       418 ~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~-----~~Ts~p~IyAaGDv~~~~-~  491 (515)
T TIGR03140       418 GDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDER-----GRTSVPGIFAAGDVTTVP-Y  491 (515)
T ss_pred             CCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCC-----CCCCCCCEEEcccccCCc-c
Confidence            1 0                                  01113444 388999998     999999999999999866 4


Q ss_pred             hhHHHHHHHHHHHHHHHHhhC
Q psy5231         128 DKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       128 ~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +++..|+++|..||.+|.+||
T Consensus       492 ~~~~~A~~~G~~Aa~~i~~~~  512 (515)
T TIGR03140       492 KQIIIAMGEGAKAALSAFDYL  512 (515)
T ss_pred             ceEEEEEccHHHHHHHHHHHH
Confidence            678899999999999999986

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02507 glutathione reductase

Probab=99.86  E-value=1.4e-20  Score=152.46  Aligned_cols=124  Identities=19%  Similarity=0.198  Sum_probs=102.5

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--e-----
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--T-----   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--~-----   85 (148)
                      +++++|||||.+|+|+|..|+++|++||++++.+.+.  .+++..+.+.+.|++.||+++++++++++..++  .     
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~  282 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITD  282 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEEC
Confidence            4555999999999999999999999999999987642  256777888888888999999999998886421  0     


Q ss_pred             ---------------------e----ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231          86 ---------------------V----TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM  139 (148)
Q Consensus        86 ---------------------~----~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~  139 (148)
                                           +    ..+++++. |+|.||++     ++|+.|+|||+|||++.+  .....|..+|+.
T Consensus       283 ~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~-----~~Ts~p~IyAiGDv~~~~--~l~~~A~~qg~~  355 (499)
T PLN02507        283 HGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEY-----SRTNIPSIWAIGDVTNRI--NLTPVALMEGTC  355 (499)
T ss_pred             CCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCC-----CcCCCCCEEEeeEcCCCC--ccHHHHHHHHHH
Confidence                                 0    01345654 88999999     999999999999999866  578899999999


Q ss_pred             HHHHHH
Q psy5231         140 AALDAQ  145 (148)
Q Consensus       140 aA~~i~  145 (148)
                      ||.||.
T Consensus       356 aa~ni~  361 (499)
T PLN02507        356 FAKTVF  361 (499)
T ss_pred             HHHHHc
Confidence            999985

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.86  E-value=1.4e-20  Score=151.93  Aligned_cols=125  Identities=21%  Similarity=0.181  Sum_probs=102.1

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhc---CCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C--
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNI---AKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N--   84 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~--   84 (148)
                      .+++++|||||++|+|+|..++.+   |.+|||+++.+.+..  ++++.+.+++.|++.||++++++.++++..+  .  
T Consensus       186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~  265 (486)
T TIGR01423       186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSK  265 (486)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceE
Confidence            345669999999999999888765   999999999877533  5777888888898999999999988888632  1  


Q ss_pred             -------e-------------------ee---cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHH
Q psy5231          85 -------T-------------------VT---GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLAL  134 (148)
Q Consensus        85 -------~-------------------~~---~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~  134 (148)
                             .                   +.   .+++++ +|+|.||++     ++|++|+|||+|||++.+  ..+..|.
T Consensus       266 ~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~-----l~Ts~~~IyA~GDv~~~~--~l~~~A~  338 (486)
T TIGR01423       266 HVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEF-----SRTNVPNIYAIGDVTDRV--MLTPVAI  338 (486)
T ss_pred             EEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCC-----CcCCCCCEEEeeecCCCc--ccHHHHH
Confidence                   0                   00   134555 488999999     999999999999999876  5888999


Q ss_pred             HHHHHHHHHHH
Q psy5231         135 GSGCMAALDAQ  145 (148)
Q Consensus       135 ~~G~~aA~~i~  145 (148)
                      .+|+.||.+|.
T Consensus       339 ~qG~~aa~ni~  349 (486)
T TIGR01423       339 NEGAAFVDTVF  349 (486)
T ss_pred             HHHHHHHHHHh
Confidence            99999999985

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.85  E-value=1.8e-20  Score=150.26  Aligned_cols=124  Identities=21%  Similarity=0.275  Sum_probs=102.5

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------   85 (148)
                      +++++|||||++|+|+|..|+++|.+||++++.+.+..  ++++.+.+.+.|++.||++++++.+.++..++.       
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~  254 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLK  254 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEEC
Confidence            45559999999999999999999999999999887643  567778888888889999999999988763211       


Q ss_pred             ----------------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231          86 ----------------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM  139 (148)
Q Consensus        86 ----------------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~  139 (148)
                                            +   ..++.++ .|++.+|++     ++|+.|+|||+|||++.+  .....|..+|+.
T Consensus       255 ~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~t~~~~IyAiGD~~~~~--~~~~~A~~~g~~  327 (461)
T PRK05249        255 SGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNEN-----YQTAVPHIYAVGDVIGFP--SLASASMDQGRI  327 (461)
T ss_pred             CCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCC-----cccCCCCEEEeeecCCCc--ccHhHHHHHHHH
Confidence                                  0   0134454 378999998     999999999999999876  578899999999


Q ss_pred             HHHHHH
Q psy5231         140 AALDAQ  145 (148)
Q Consensus       140 aA~~i~  145 (148)
                      ||.+|.
T Consensus       328 aa~~i~  333 (461)
T PRK05249        328 AAQHAV  333 (461)
T ss_pred             HHHHHc
Confidence            999985

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.85  E-value=4e-20  Score=147.84  Aligned_cols=124  Identities=21%  Similarity=0.193  Sum_probs=101.8

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--e-----
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--T-----   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--~-----   85 (148)
                      +++++|||||.+|+|+|..|+++|.+|+++++.+.+..  +++..+.+.+.|++.||++++++++.++..++  .     
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~  245 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLS  245 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEc
Confidence            45559999999999999999999999999999876532  46677778888888999999999888876321  0     


Q ss_pred             ----------------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231          86 ----------------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM  139 (148)
Q Consensus        86 ----------------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~  139 (148)
                                            +   ..+++++ +|++.+|++     ++|+.|+|||+|||++.+  .....|.++|+.
T Consensus       246 ~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-----~~Ts~~~IyA~GD~~~~~--~l~~~A~~~g~~  318 (446)
T TIGR01424       246 HGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEY-----SRTSIPSIYAVGDVTDRI--NLTPVAIMEATC  318 (446)
T ss_pred             CCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCC-----CccCCCCEEEeeccCCCc--cchhHHHHHHHH
Confidence                                  0   0134455 388999999     999999999999999765  588899999999


Q ss_pred             HHHHHH
Q psy5231         140 AALDAQ  145 (148)
Q Consensus       140 aA~~i~  145 (148)
                      ||.+|.
T Consensus       319 ~a~~i~  324 (446)
T TIGR01424       319 FANTEF  324 (446)
T ss_pred             HHHHHh
Confidence            999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.85  E-value=1.5e-20  Score=153.89  Aligned_cols=132  Identities=31%  Similarity=0.504  Sum_probs=103.4

Q ss_pred             hhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231           4 EFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus         4 ~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      +.+..+.++++    +|||||++|+|+|..|+++|++||++++.+.+.......+++++   +.||++++++.+.++.++
T Consensus       136 ~~~~~~~g~~V----vVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~---~~gV~i~~~~~V~~i~~~  208 (555)
T TIGR03143       136 CDGEFFTGMDV----FVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKN---HPKIEVKFNTELKEATGD  208 (555)
T ss_pred             cChhhcCCCEE----EEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHh---CCCcEEEeCCEEEEEEcC
Confidence            34455667777    99999999999999999999999999998876544444555543   579999999988887543


Q ss_pred             Ce----------------e------------------------ecceeec-CCeEEecCCCCcccccCCCCCeEEecccC
Q psy5231          84 NT----------------V------------------------TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCT  122 (148)
Q Consensus        84 ~~----------------~------------------------~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~  122 (148)
                      +.                +                        ...+.++ +|+|.+|++     ++|+.|+|||+|||+
T Consensus       209 ~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~-----~~Ts~p~IyAaGDv~  283 (555)
T TIGR03143       209 DGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNED-----METNVPGVYAAGDLR  283 (555)
T ss_pred             CcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCc-----cccCCCCEEEceecc
Confidence            21                0                        0013344 378999988     999999999999997


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         123 RLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       123 ~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ... ++++..|+.+|+.||.+|.+||
T Consensus       284 ~~~-~~~v~~A~~~G~~Aa~~i~~~l  308 (555)
T TIGR03143       284 PKE-LRQVVTAVADGAIAATSAERYV  308 (555)
T ss_pred             CCC-cchheeHHhhHHHHHHHHHHHH
Confidence            543 3578899999999999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.85  E-value=2.8e-20  Score=140.54  Aligned_cols=130  Identities=45%  Similarity=0.725  Sum_probs=102.8

Q ss_pred             hhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcC-CcEEEcCceEEEEecC
Q psy5231           5 FGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEG-KIDIKLKHIVHKIIGN   83 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~-~v~i~~~~~v~~i~~~   83 (148)
                      .+..+.++++    +|||+|++|+|+|..|++.+++|+++++.+.+...+...+.+.    +. ||++++++.+.++..+
T Consensus       135 ~~~~~~~~~v----~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~----~~~gv~~~~~~~v~~i~~~  206 (300)
T TIGR01292       135 DGPFFKNKEV----AVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLR----KNPNIEFLWNSTVKEIVGD  206 (300)
T ss_pred             ChhhcCCCEE----EEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHH----hCCCeEEEeccEEEEEEcc
Confidence            3345567777    9999999999999999999999999999887765555555554    45 9999999888887643


Q ss_pred             Ce----------------------------------eecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccch
Q psy5231          84 NT----------------------------------VTGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFID  128 (148)
Q Consensus        84 ~~----------------------------------~~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~  128 (148)
                      +.                                  +...+.++ +|++.+|++     ++|+.|+||++|||+... ++
T Consensus       207 ~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~-----~~t~~~~vya~GD~~~~~-~~  280 (300)
T TIGR01292       207 NKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEG-----MRTSVPGVFAAGDVRDKG-YR  280 (300)
T ss_pred             CcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCC-----CccCCCCEEEeecccCcc-hh
Confidence            20                                  00112344 378999998     999999999999999733 36


Q ss_pred             hHHHHHHHHHHHHHHHHhhC
Q psy5231         129 KQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       129 ~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ++..|+.+|+.||.+|.++|
T Consensus       281 ~~~~A~~~g~~aa~~i~~~~  300 (300)
T TIGR01292       281 QAVTAAGDGCIAALSAERYL  300 (300)
T ss_pred             hhhhhhhhHHHHHHHHHhhC
Confidence            88999999999999999987

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK14727 putative mercuric reductase; Provisional

Probab=99.85  E-value=3.3e-20  Score=149.58  Aligned_cols=125  Identities=17%  Similarity=0.212  Sum_probs=101.6

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------   85 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------   85 (148)
                      .+++++|||+|++|+|+|..|+++|++||++++...+. .+++..+.+++.|++.||+++++++++++..++.       
T Consensus       187 ~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~  266 (479)
T PRK14727        187 LPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTG  266 (479)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEc
Confidence            45666999999999999999999999999999854333 2566777888888889999999999988753211       


Q ss_pred             ---------------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHH
Q psy5231          86 ---------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMA  140 (148)
Q Consensus        86 ---------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~a  140 (148)
                                           + .  .+++++ +|+|.||++     ++|+.|+|||+|||+..+  ..+..|..+|+.|
T Consensus       267 ~g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~-----~~Ts~~~IyA~GD~~~~~--~~~~~A~~~G~~a  339 (479)
T PRK14727        267 HGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPA-----METSAPDIYAAGDCSDLP--QFVYVAAAAGSRA  339 (479)
T ss_pred             CCeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCC-----eecCCCCEEEeeecCCcc--hhhhHHHHHHHHH
Confidence                                 0 0  134555 388999999     999999999999999876  5788999999999


Q ss_pred             HHHHH
Q psy5231         141 ALDAQ  145 (148)
Q Consensus       141 A~~i~  145 (148)
                      |.+|.
T Consensus       340 a~~i~  344 (479)
T PRK14727        340 GINMT  344 (479)
T ss_pred             HHHHc
Confidence            99985

>TIGR02053 MerA mercuric reductase

Probab=99.85  E-value=3.7e-20  Score=148.54  Aligned_cols=125  Identities=21%  Similarity=0.249  Sum_probs=102.0

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--------   84 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--------   84 (148)
                      +++++|||+|.+|+|+|..|+++|.+||++++.+++..  +++....+++.|++.||++++++++.++..++        
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~  245 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVE  245 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEE
Confidence            45569999999999999999999999999999876642  56677778888888999999999888775321        


Q ss_pred             -----e-------------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231          85 -----T-------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS  136 (148)
Q Consensus        85 -----~-------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~  136 (148)
                           .                   + .  .+++++ .|++.+|++     ++|+.|+|||+|||++.+  .+...|..+
T Consensus       246 ~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~Ts~~~VyAiGD~~~~~--~~~~~A~~~  318 (463)
T TIGR02053       246 KPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDET-----LRTSNPGIYAAGDVTGGL--QLEYVAAKE  318 (463)
T ss_pred             eCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCC-----ccCCCCCEEEeeecCCCc--ccHhHHHHH
Confidence                 0                   0 0  123444 378999988     999999999999999876  688999999


Q ss_pred             HHHHHHHHHh
Q psy5231         137 GCMAALDAQR  146 (148)
Q Consensus       137 G~~aA~~i~~  146 (148)
                      |+.||.+|..
T Consensus       319 g~~aa~ni~~  328 (463)
T TIGR02053       319 GVVAAENALG  328 (463)
T ss_pred             HHHHHHHhcC
Confidence            9999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.85  E-value=3.6e-20  Score=148.85  Aligned_cols=126  Identities=17%  Similarity=0.208  Sum_probs=103.4

Q ss_pred             cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--e---
Q psy5231          13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--T---   85 (148)
Q Consensus        13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--~---   85 (148)
                      ..+++++|||+|.+|+|+|..|+++|++||++++.+.+..  +++..+.+.+.|++.||++++++++.++..+.  .   
T Consensus       175 ~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~  254 (466)
T PRK07845        175 ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVT  254 (466)
T ss_pred             ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEE
Confidence            3455669999999999999999999999999999876643  56677778888888999999999888875321  0   


Q ss_pred             -----------------------e----ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231          86 -----------------------V----TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG  137 (148)
Q Consensus        86 -----------------------~----~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G  137 (148)
                                             +    ..+++++. |+|.+|++     ++|+.|+|||+|||++.+  +++..|..+|
T Consensus       255 ~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~-----~~Ts~~~IyA~GD~~~~~--~l~~~A~~~g  327 (466)
T PRK07845        255 LTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRV-----SRTSVPGIYAAGDCTGVL--PLASVAAMQG  327 (466)
T ss_pred             ECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCC-----cccCCCCEEEEeeccCCc--cchhHHHHHH
Confidence                                   0    01355654 88999998     999999999999999875  6899999999


Q ss_pred             HHHHHHHH
Q psy5231         138 CMAALDAQ  145 (148)
Q Consensus       138 ~~aA~~i~  145 (148)
                      ..||.++.
T Consensus       328 ~~aa~~i~  335 (466)
T PRK07845        328 RIAMYHAL  335 (466)
T ss_pred             HHHHHHHc
Confidence            99999885

>PRK13748 putative mercuric reductase; Provisional

Probab=99.85  E-value=3.2e-20  Score=151.95  Aligned_cols=124  Identities=17%  Similarity=0.209  Sum_probs=101.8

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--------   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--------   85 (148)
                      +++++|||||++|+|+|..|+++|++||++++..-+. .++++.+.+++.|++.||++++++.+.++..++.        
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~  349 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGH  349 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecC
Confidence            4555999999999999999999999999999864333 3567778888888899999999999988753210        


Q ss_pred             --------------------e---ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHH
Q psy5231          86 --------------------V---TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAA  141 (148)
Q Consensus        86 --------------------~---~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA  141 (148)
                                          +   ..++++++ |+|.||++     ++|+.|+|||+|||++.+  ..+..|..+|+.||
T Consensus       350 ~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~-----~~Ts~~~IyA~GD~~~~~--~~~~~A~~~g~~aa  422 (561)
T PRK13748        350 GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQG-----MRTSVPHIYAAGDCTDQP--QFVYVAAAAGTRAA  422 (561)
T ss_pred             CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCC-----cccCCCCEEEeeecCCCc--cchhHHHHHHHHHH
Confidence                                0   01345554 78999999     999999999999999876  57889999999999


Q ss_pred             HHHH
Q psy5231         142 LDAQ  145 (148)
Q Consensus       142 ~~i~  145 (148)
                      .+|.
T Consensus       423 ~~i~  426 (561)
T PRK13748        423 INMT  426 (561)
T ss_pred             HHHc
Confidence            9985

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.85  E-value=3.9e-20  Score=148.58  Aligned_cols=125  Identities=17%  Similarity=0.141  Sum_probs=102.0

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--------   83 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--------   83 (148)
                      .+++++|||||.+|+|+|..|+++|.+||++++.+++..  +++..+.+++.|++.||++++++.+.++.++        
T Consensus       171 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~  250 (466)
T PRK07818        171 LPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTV  250 (466)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEE
Confidence            456669999999999999999999999999999876533  5667778888888899999999988877532        


Q ss_pred             ----C---e------------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHH
Q psy5231          84 ----N---T------------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLAL  134 (148)
Q Consensus        84 ----~---~------------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~  134 (148)
                          +   .                  +   ..++.++ +|++.+|++     ++|+.|+|||+|||++.+  +....|.
T Consensus       251 ~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~-----~~Ts~p~IyAiGD~~~~~--~l~~~A~  323 (466)
T PRK07818        251 SKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDY-----MRTNVPHIYAIGDVTAKL--QLAHVAE  323 (466)
T ss_pred             EecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCC-----cccCCCCEEEEeecCCCc--ccHhHHH
Confidence                1   0                  0   0123444 478999999     999999999999998765  6889999


Q ss_pred             HHHHHHHHHHH
Q psy5231         135 GSGCMAALDAQ  145 (148)
Q Consensus       135 ~~G~~aA~~i~  145 (148)
                      .+|+.||.+|.
T Consensus       324 ~~g~~aa~~i~  334 (466)
T PRK07818        324 AQGVVAAETIA  334 (466)
T ss_pred             HHHHHHHHHHc
Confidence            99999999985

>PRK06116 glutathione reductase; Validated

Probab=99.85  E-value=4.7e-20  Score=147.47  Aligned_cols=125  Identities=18%  Similarity=0.254  Sum_probs=102.4

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C-e---
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N-T---   85 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~-~---   85 (148)
                      .+++++|||||++|+|+|..|+++|.+||++++.+.+.  .+++..+.+.+.|++.||++++++++.++..+  + .   
T Consensus       166 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~  245 (450)
T PRK06116        166 LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLT  245 (450)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEE
Confidence            34555999999999999999999999999999987653  25667778888888899999999999888642  1 1   


Q ss_pred             ------------------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231          86 ------------------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG  137 (148)
Q Consensus        86 ------------------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G  137 (148)
                                              +   ..+++++ +|++.+|++     ++|+.|+|||+|||++.+  +....|+.+|
T Consensus       246 ~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~Ts~~~IyA~GD~~~~~--~~~~~A~~~g  318 (450)
T PRK06116        246 LEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEY-----QNTNVPGIYAVGDVTGRV--ELTPVAIAAG  318 (450)
T ss_pred             EcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCC-----CCcCCCCEEEEeecCCCc--CcHHHHHHHH
Confidence                                    0   0134455 488999998     999999999999998765  5788999999


Q ss_pred             HHHHHHHH
Q psy5231         138 CMAALDAQ  145 (148)
Q Consensus       138 ~~aA~~i~  145 (148)
                      +.||.+|.
T Consensus       319 ~~aa~~i~  326 (450)
T PRK06116        319 RRLSERLF  326 (450)
T ss_pred             HHHHHHHh
Confidence            99999985

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.84  E-value=5.6e-20  Score=147.98  Aligned_cols=125  Identities=16%  Similarity=0.222  Sum_probs=100.7

Q ss_pred             cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC------
Q psy5231          13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN------   84 (148)
Q Consensus        13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~------   84 (148)
                      ..+++++|||||++|+|+|..|+++|.+||++++.+.+..  ++++.+.+.+.|++. +++++++.+.+++.++      
T Consensus       172 ~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~  250 (471)
T PRK06467        172 EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVT  250 (471)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEE
Confidence            3456669999999999999999999999999999877643  566777777778777 9999998887764211      


Q ss_pred             ----------e-----------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHH
Q psy5231          85 ----------T-----------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLA  133 (148)
Q Consensus        85 ----------~-----------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A  133 (148)
                                .                 +   ..+++++ +|+|.||++     ++|+.|+|||+|||++.+  .....|
T Consensus       251 ~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~-----~~t~~p~VyAiGDv~~~~--~la~~A  323 (471)
T PRK06467        251 MEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQ-----CRTNVPHIFAIGDIVGQP--MLAHKG  323 (471)
T ss_pred             EEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCC-----cccCCCCEEEehhhcCCc--ccHHHH
Confidence                      0                 0   0134555 488999999     999999999999998766  578999


Q ss_pred             HHHHHHHHHHHH
Q psy5231         134 LGSGCMAALDAQ  145 (148)
Q Consensus       134 ~~~G~~aA~~i~  145 (148)
                      ..+|+.||.+|.
T Consensus       324 ~~eG~~aa~~i~  335 (471)
T PRK06467        324 VHEGHVAAEVIA  335 (471)
T ss_pred             HHHHHHHHHHHc
Confidence            999999999985

>PRK06370 mercuric reductase; Validated

Probab=99.84  E-value=7.9e-20  Score=146.71  Aligned_cols=126  Identities=19%  Similarity=0.271  Sum_probs=102.2

Q ss_pred             cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC------
Q psy5231          13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN------   84 (148)
Q Consensus        13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~------   84 (148)
                      ..+++++|||||++|+|+|..|+++|.+|+++++.+.+..  +++..+.+.+.|++.||++++++++.++..++      
T Consensus       169 ~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~  248 (463)
T PRK06370        169 ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVG  248 (463)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEE
Confidence            3455669999999999999999999999999999877643  45667777778888999999999888876421      


Q ss_pred             ------e--------------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHH
Q psy5231          85 ------T--------------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLAL  134 (148)
Q Consensus        85 ------~--------------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~  134 (148)
                            .                    +   ..+++++ +|++.+|++     ++|+.|+|||+|||++.+  .....|.
T Consensus       249 ~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-----l~t~~~~IyAiGD~~~~~--~~~~~A~  321 (463)
T PRK06370        249 LDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQ-----LRTTNPGIYAAGDCNGRG--AFTHTAY  321 (463)
T ss_pred             EEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcC-----CcCCCCCEEEeeecCCCc--ccHHHHH
Confidence                  0                    0   0123444 378999999     999999999999998775  6788999


Q ss_pred             HHHHHHHHHHH
Q psy5231         135 GSGCMAALDAQ  145 (148)
Q Consensus       135 ~~G~~aA~~i~  145 (148)
                      .+|+.||.||.
T Consensus       322 ~~g~~aa~ni~  332 (463)
T PRK06370        322 NDARIVAANLL  332 (463)
T ss_pred             HHHHHHHHHHh
Confidence            99999999986

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.84  E-value=8.4e-20  Score=145.70  Aligned_cols=124  Identities=18%  Similarity=0.226  Sum_probs=102.5

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------   85 (148)
                      +++++|||+|.+|+|+|..|+++|.+||++++.+.+..  +++..+.+.+.|++.||++++++++.++..++.       
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~  237 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSE  237 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEc
Confidence            45559999999999999999999999999999876643  566777788888889999999999988864311       


Q ss_pred             ---------------------e---ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHH
Q psy5231          86 ---------------------V---TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMA  140 (148)
Q Consensus        86 ---------------------~---~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~a  140 (148)
                                           +   ..+++++. |+|.+|++     ++|+.|+|||+|||++.+  .....|..+|+.+
T Consensus       238 ~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~-----~~Ts~~~IyA~GD~~~~~--~~~~~a~~~~~~~  310 (441)
T PRK08010        238 HAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKY-----LHTTADNIWAMGDVTGGL--QFTYISLDDYRIV  310 (441)
T ss_pred             CCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCC-----cccCCCCEEEeeecCCCc--cchhHHHHHHHHH
Confidence                                 0   01355654 88999999     999999999999999876  6788999999999


Q ss_pred             HHHHH
Q psy5231         141 ALDAQ  145 (148)
Q Consensus       141 A~~i~  145 (148)
                      +.++.
T Consensus       311 ~~~~~  315 (441)
T PRK08010        311 RDELL  315 (441)
T ss_pred             HHHHc
Confidence            99885

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.84  E-value=8.5e-20  Score=146.39  Aligned_cols=125  Identities=18%  Similarity=0.163  Sum_probs=101.7

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--------   84 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--------   84 (148)
                      +++++|||||++|+|+|..|+++|.+||++++.+.+..  +++..+.+.+.|++.||++++++++.++..++        
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~  251 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLE  251 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEE
Confidence            45569999999999999999999999999999877532  46677778888888999999999888875421        


Q ss_pred             -----e-------------------e---ecceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231          85 -----T-------------------V---TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG  137 (148)
Q Consensus        85 -----~-------------------~---~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G  137 (148)
                           .                   +   ..++.+++|++.+|++     ++|+.|+|||+|||+..+  +....|..+|
T Consensus       252 ~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~-----~~t~~~~VyAiGD~~~~~--~~~~~A~~~g  324 (462)
T PRK06416        252 DGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQ-----LRTNVPNIYAIGDIVGGP--MLAHKASAEG  324 (462)
T ss_pred             eCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCC-----CccCCCCEEEeeecCCCc--chHHHHHHHH
Confidence                 1                   0   0123344678999998     999999999999999765  5889999999


Q ss_pred             HHHHHHHHh
Q psy5231         138 CMAALDAQR  146 (148)
Q Consensus       138 ~~aA~~i~~  146 (148)
                      +.||.+|..
T Consensus       325 ~~aa~ni~~  333 (462)
T PRK06416        325 IIAAEAIAG  333 (462)
T ss_pred             HHHHHHHcC
Confidence            999999863

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.84  E-value=9.9e-20  Score=146.34  Aligned_cols=125  Identities=15%  Similarity=0.090  Sum_probs=99.5

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-------   84 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-------   84 (148)
                      .+++++|||||++|+|+|..|+++|++||++++.+++..  +++..+.+++.|++.||++++++.+.++..++       
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~  252 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTL  252 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEE
Confidence            355669999999999999999999999999999877532  45677778888888999999998887775321       


Q ss_pred             --------e-------------------e-e--cceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHH
Q psy5231          85 --------T-------------------V-T--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLAL  134 (148)
Q Consensus        85 --------~-------------------~-~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~  134 (148)
                              .                   + .  .++.++.+.+.+|++     ++|+.|+|||+|||++.+  .....|.
T Consensus       253 ~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~-----~~Ts~~~IyA~GD~~~~~--~la~~A~  325 (466)
T PRK06115        253 EPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDH-----HRTSVPGVWVIGDVTSGP--MLAHKAE  325 (466)
T ss_pred             EEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCC-----eecCCCCEEEeeecCCCc--ccHHHHH
Confidence                    0                   0 0  023344433667888     999999999999999876  5788999


Q ss_pred             HHHHHHHHHHH
Q psy5231         135 GSGCMAALDAQ  145 (148)
Q Consensus       135 ~~G~~aA~~i~  145 (148)
                      .+|+.||.+|.
T Consensus       326 ~~g~~aa~~i~  336 (466)
T PRK06115        326 DEAVACIERIA  336 (466)
T ss_pred             HHHHHHHHHHc
Confidence            99999999985

>PRK14694 putative mercuric reductase; Provisional

Probab=99.84  E-value=1.1e-19  Score=146.00  Aligned_cols=124  Identities=19%  Similarity=0.213  Sum_probs=100.5

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--------   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--------   85 (148)
                      +++++|||+|++|+|+|..|+++|.+||++++...++ .++++.+.+++.|++.||++++++.+.++..++.        
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~  257 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA  257 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC
Confidence            3455999999999999999999999999998754333 2566778888888899999999999988764321        


Q ss_pred             -------------------ee----cceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHH
Q psy5231          86 -------------------VT----GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAAL  142 (148)
Q Consensus        86 -------------------~~----~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~  142 (148)
                                         +.    .+++.++|++.+|++     ++|+.|+|||+|||++.+  ..+..|..+|+.||.
T Consensus       258 ~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~-----~~Ts~~~IyA~GD~~~~~--~~~~~A~~~G~~aa~  330 (468)
T PRK14694        258 GTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEH-----LQTTVSGIYAAGDCTDQP--QFVYVAAAGGSRAAI  330 (468)
T ss_pred             CEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCC-----cccCCCCEEEEeecCCCc--ccHHHHHHHHHHHHH
Confidence                               00    123334588999999     999999999999999876  588899999999999


Q ss_pred             HHH
Q psy5231         143 DAQ  145 (148)
Q Consensus       143 ~i~  145 (148)
                      +|.
T Consensus       331 ~i~  333 (468)
T PRK14694        331 NMT  333 (468)
T ss_pred             Hhc
Confidence            984

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.84  E-value=1.1e-19  Score=145.49  Aligned_cols=124  Identities=27%  Similarity=0.319  Sum_probs=95.5

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC---
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN---   84 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~---   84 (148)
                      .||+|    +|||||++|+|+|..+.++|.+||+++|++.  +.......+.+.    +.||++++++.+.++.+++   
T Consensus       271 ~gk~V----vVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~----~~GV~~~~~~~~~~i~~~~~g~  342 (449)
T TIGR01316       271 AGKSV----VVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAE----EEGVKFHFLCQPVEIIGDEEGN  342 (449)
T ss_pred             CCCeE----EEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHH----hCCCEEEeccCcEEEEEcCCCe
Confidence            45666    9999999999999999999999999998753  333333334443    6899999877666553210   


Q ss_pred             ------------------------------e-----------------ee--cceeec-CCeEEecCCCCcccccCCCCC
Q psy5231          85 ------------------------------T-----------------VT--GQLEMN-DGYIKTKLNKKTGYTSTNISG  114 (148)
Q Consensus        85 ------------------------------~-----------------~~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~  114 (148)
                                                    .                 +.  .+++++ .|+|.+|+.     ++|+.|+
T Consensus       343 v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~-----~~Ts~~~  417 (449)
T TIGR01316       343 VRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDED-----QRTSIPG  417 (449)
T ss_pred             EEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCC-----CccCCCC
Confidence                                          0                 00  124444 378889988     9999999


Q ss_pred             eEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         115 VFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       115 vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      |||+|||+..+  ..+..|+++|+.||.+|++||
T Consensus       418 VfA~GD~~~g~--~~v~~Ai~~G~~AA~~I~~~L  449 (449)
T TIGR01316       418 VFAGGDIILGA--ATVIRAMGQGKRAAKSINEYL  449 (449)
T ss_pred             EEEecCCCCCc--HHHHHHHHHHHHHHHHHHhhC
Confidence            99999998766  688999999999999999997

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00058 glutathione reductase; Provisional

Probab=99.83  E-value=1.3e-19  Score=148.33  Aligned_cols=126  Identities=18%  Similarity=0.266  Sum_probs=100.4

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC---e----
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN---T----   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~---~----   85 (148)
                      +++++|||||.+|+|+|..|+++|++||++++.+++..  ++++.+.+.+.|++.||++++++.+.++.+++   .    
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~  316 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYL  316 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEE
Confidence            45559999999999999999999999999999876532  56677788888888999999999888876421   0    


Q ss_pred             ------------------------ee-c--ceeecCCeEEecCCCCcccccCCCCCeEEecccCccc-------------
Q psy5231          86 ------------------------VT-G--QLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY-------------  125 (148)
Q Consensus        86 ------------------------~~-~--~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~-------------  125 (148)
                                              +. .  ++..++|+|.||++     ++|+.|+|||+|||++.+             
T Consensus       317 ~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~-----lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~  391 (561)
T PTZ00058        317 SDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDN-----QRTSVKHIYAVGDCCMVKKNQEIEDLNLLKL  391 (561)
T ss_pred             CCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECcC-----CccCCCCEEEeEeccCccccccccccccccc
Confidence                                    00 0  11223588999999     999999999999999821             


Q ss_pred             -------------------cchhHHHHHHHHHHHHHHHH
Q psy5231         126 -------------------FIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus       126 -------------------~~~~~~~A~~~G~~aA~~i~  145 (148)
                                         ..+....|..+|+.||.+|.
T Consensus       392 ~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~  430 (561)
T PTZ00058        392 YNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF  430 (561)
T ss_pred             cccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence                               12567899999999999985

>PLN02546 glutathione reductase

Probab=99.83  E-value=9.6e-20  Score=148.99  Aligned_cols=123  Identities=18%  Similarity=0.224  Sum_probs=100.3

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecC--Ce------
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--NT------   85 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~~------   85 (148)
                      ++++|||||++|+|+|..|+.+|.+||++++.+.+.  .+++..+.+.+.|++.||++++++.+.++..+  +.      
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~  332 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTN  332 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEEC
Confidence            344999999999999999999999999999987653  25666777778888899999999988877531  10      


Q ss_pred             ----------------------e--e-cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231          86 ----------------------V--T-GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM  139 (148)
Q Consensus        86 ----------------------~--~-~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~  139 (148)
                                            +  . .+++++ +|+|.||++     ++|++|+|||+|||++.+  .....|..+|+.
T Consensus       333 ~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~-----l~Ts~p~IYAaGDv~~~~--~l~~~A~~~g~~  405 (558)
T PLN02546        333 KGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEY-----SRTSVPSIWAVGDVTDRI--NLTPVALMEGGA  405 (558)
T ss_pred             CeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCC-----ceeCCCCEEEeeccCCCc--ccHHHHHHHHHH
Confidence                                  0  0 134455 488999999     999999999999999876  678899999999


Q ss_pred             HHHHHH
Q psy5231         140 AALDAQ  145 (148)
Q Consensus       140 aA~~i~  145 (148)
                      +|.+|.
T Consensus       406 ~a~~i~  411 (558)
T PLN02546        406 LAKTLF  411 (558)
T ss_pred             HHHHHc
Confidence            999985

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.83  E-value=1.4e-19  Score=145.12  Aligned_cols=125  Identities=18%  Similarity=0.200  Sum_probs=101.1

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------   85 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------   85 (148)
                      .+++++|||||++|+|+|..|+++|.+||++++.+.+..  ++++.+.+.+.|++.||++++++.+.++..++.      
T Consensus       169 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~  248 (458)
T PRK06912        169 IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY  248 (458)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE
Confidence            355669999999999999999999999999999877633  466777788888889999999998888753221      


Q ss_pred             ------------------------e---ecceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHH
Q psy5231          86 ------------------------V---TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGC  138 (148)
Q Consensus        86 ------------------------~---~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~  138 (148)
                                              +   ..++.++++.+.+|++     ++|+.|+|||+|||++.+  +....|..+|+
T Consensus       249 ~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~-----~~ts~~~VyA~GD~~~~~--~la~~A~~~g~  321 (458)
T PRK06912        249 EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEH-----MQTNVPHIYACGDVIGGI--QLAHVAFHEGT  321 (458)
T ss_pred             CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCC-----eecCCCCEEEEeecCCCc--ccHHHHHHHHH
Confidence                                    0   0123444444889998     999999999999999765  68889999999


Q ss_pred             HHHHHHH
Q psy5231         139 MAALDAQ  145 (148)
Q Consensus       139 ~aA~~i~  145 (148)
                      .||.++.
T Consensus       322 ~aa~~~~  328 (458)
T PRK06912        322 TAALHAS  328 (458)
T ss_pred             HHHHHHc
Confidence            9999985

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.83  E-value=1.3e-19  Score=145.14  Aligned_cols=124  Identities=21%  Similarity=0.232  Sum_probs=101.1

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--------   84 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--------   84 (148)
                      +++++|||||++|+|+|..|+++|.+|+++++.+.+..  ++++.+.+++.|++. |++++++.+.+++.++        
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~  247 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELE  247 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEE
Confidence            34559999999999999999999999999999877643  566777788888888 9999999888775321        


Q ss_pred             -----e-------------------ee---cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231          85 -----T-------------------VT---GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS  136 (148)
Q Consensus        85 -----~-------------------~~---~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~  136 (148)
                           .                   +.   .+++++ +|+|.+|++     ++|+.|+|||+|||++.+  ++...|..+
T Consensus       248 ~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~-----~~ts~~~IyA~GD~~~~~--~~~~~A~~q  320 (460)
T PRK06292        248 KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEH-----TQTSVPGIYAAGDVNGKP--PLLHEAADE  320 (460)
T ss_pred             cCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCC-----cccCCCCEEEEEecCCCc--cchhHHHHH
Confidence                 0                   00   134455 488999999     999999999999999876  578999999


Q ss_pred             HHHHHHHHHh
Q psy5231         137 GCMAALDAQR  146 (148)
Q Consensus       137 G~~aA~~i~~  146 (148)
                      |+.||.+|..
T Consensus       321 g~~aa~~i~~  330 (460)
T PRK06292        321 GRIAAENAAG  330 (460)
T ss_pred             HHHHHHHhcC
Confidence            9999999864

>PRK12831 putative oxidoreductase; Provisional

Probab=99.83  E-value=1.8e-19  Score=144.78  Aligned_cols=126  Identities=25%  Similarity=0.327  Sum_probs=95.7

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--   84 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--   84 (148)
                      ..||+|    +|||||++|+|+|..|.++|.+||+++|++.  ++......+++.    +.||++++++.+.++..+.  
T Consensus       279 ~~gk~V----vVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~----~eGV~i~~~~~~~~i~~~~~g  350 (464)
T PRK12831        279 KVGKKV----AVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAK----EEGVIFDLLTNPVEILGDENG  350 (464)
T ss_pred             cCCCeE----EEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHH----HcCCEEEecccceEEEecCCC
Confidence            456666    9999999999999999999999999998653  333333333333    5899999877766653210  


Q ss_pred             -------------------------------e------------------ee--cceeecC-CeEEecCCCCcccccCCC
Q psy5231          85 -------------------------------T------------------VT--GQLEMND-GYIKTKLNKKTGYTSTNI  112 (148)
Q Consensus        85 -------------------------------~------------------~~--~~~~~~~-g~i~vd~~~~~~~~~t~~  112 (148)
                                                     .                  +.  .++.++. |+|.+|+.+    ++||.
T Consensus       351 ~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~----~~Ts~  426 (464)
T PRK12831        351 WVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEET----GLTSK  426 (464)
T ss_pred             eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCC----CccCC
Confidence                                           0                  00  1344443 778888765    89999


Q ss_pred             CCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         113 SGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       113 ~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      |+|||+|||+.++  .++..|+++|+.||.+|++||
T Consensus       427 pgVfAaGD~~~g~--~~v~~Ai~~G~~AA~~I~~~L  460 (464)
T PRK12831        427 EGVFAGGDAVTGA--ATVILAMGAGKKAAKAIDEYL  460 (464)
T ss_pred             CCEEEeCCCCCCc--hHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998766  689999999999999999987

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.82  E-value=2.7e-19  Score=144.10  Aligned_cols=124  Identities=18%  Similarity=0.172  Sum_probs=101.1

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--------   84 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--------   84 (148)
                      +++++|||+|++|+|+|..|+++|.+||++++.+.+..  ++++.+.+.+.|++.||++++++.+.++..++        
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~  262 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYT  262 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEE
Confidence            34559999999999999999999999999999877632  56677778888888999999998888775321        


Q ss_pred             -------e------------------ee---cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHH
Q psy5231          85 -------T------------------VT---GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALG  135 (148)
Q Consensus        85 -------~------------------~~---~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~  135 (148)
                             .                  +.   .+++++ +|++.+|+.     ++|+.|+|||+|||+..+  .+...|..
T Consensus       263 ~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-----~~Ts~~~VyA~GD~~~~~--~~~~~A~~  335 (475)
T PRK06327        263 DADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDH-----CRTNVPNVYAIGDVVRGP--MLAHKAEE  335 (475)
T ss_pred             eCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCC-----CccCCCCEEEEEeccCCc--chHHHHHH
Confidence                   0                  00   124455 388999998     999999999999999766  58899999


Q ss_pred             HHHHHHHHHH
Q psy5231         136 SGCMAALDAQ  145 (148)
Q Consensus       136 ~G~~aA~~i~  145 (148)
                      +|+.||.+|.
T Consensus       336 ~G~~aa~~i~  345 (475)
T PRK06327        336 EGVAVAERIA  345 (475)
T ss_pred             HHHHHHHHHc
Confidence            9999999985

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.82  E-value=1.7e-19  Score=143.94  Aligned_cols=126  Identities=18%  Similarity=0.269  Sum_probs=99.2

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------   85 (148)
                      +++++|||||.+|+|+|..|+++|++||++++.+.+..  +++..+.+.+.|++.||+++++++++++.+...       
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~  227 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKV  227 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCE
Confidence            34559999999999999999999999999999877543  566777888888889999999999988753211       


Q ss_pred             ------------------ee-cceeecC-CeEEecCCCCcccccCCCCCeEEecccCccc--------cchhHHHHHHHH
Q psy5231          86 ------------------VT-GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLY--------FIDKQLLALGSG  137 (148)
Q Consensus        86 ------------------~~-~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~--------~~~~~~~A~~~G  137 (148)
                                        +. .++.+++ |+|.||++     ++|+.|+|||+|||+..+        ..+....|..+|
T Consensus       228 ~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~-----~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a  302 (438)
T PRK13512        228 EHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDK-----FETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAA  302 (438)
T ss_pred             EEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCC-----cccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHH
Confidence                              00 1355554 88999999     999999999999998631        013455678899


Q ss_pred             HHHHHHHH
Q psy5231         138 CMAALDAQ  145 (148)
Q Consensus       138 ~~aA~~i~  145 (148)
                      +.+|.+|.
T Consensus       303 ~~~a~ni~  310 (438)
T PRK13512        303 SIVAEQIA  310 (438)
T ss_pred             HHHHHHhc
Confidence            99999885

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.82  E-value=4.8e-19  Score=143.00  Aligned_cols=125  Identities=19%  Similarity=0.185  Sum_probs=97.2

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecC----------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN----------   83 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~----------   83 (148)
                      +++++|||||++|+|+|..|+++|.+||++++..-++ .++++.+.+++.|++.||++++++.+.++...          
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~  259 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTD  259 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEec
Confidence            4556999999999999999999999999999853233 25677788888888999999998876654321          


Q ss_pred             C----e------------------e---ecceeec--CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231          84 N----T------------------V---TGQLEMN--DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS  136 (148)
Q Consensus        84 ~----~------------------~---~~~~~~~--~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~  136 (148)
                      +    .                  +   ..+++++  .|+|.+|++     ++|+.|+|||+|||+... ......|..+
T Consensus       260 ~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~-----~~Ts~p~IyA~GDv~~~~-~~l~~~A~~~  333 (484)
T TIGR01438       260 STNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEE-----EQTNVPYIYAVGDILEDK-QELTPVAIQA  333 (484)
T ss_pred             CCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCC-----cccCCCCEEEEEEecCCC-ccchHHHHHH
Confidence            1    1                  0   0124444  278999998     999999999999998632 2467889999


Q ss_pred             HHHHHHHHH
Q psy5231         137 GCMAALDAQ  145 (148)
Q Consensus       137 G~~aA~~i~  145 (148)
                      |+.+|.+|.
T Consensus       334 g~~aa~~i~  342 (484)
T TIGR01438       334 GRLLAQRLF  342 (484)
T ss_pred             HHHHHHHHh
Confidence            999999986

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR03452 mycothione_red mycothione reductase

Probab=99.82  E-value=4.7e-19  Score=141.96  Aligned_cols=123  Identities=24%  Similarity=0.304  Sum_probs=98.1

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------   85 (148)
                      +++++|||||++|+|+|..|+++|.+||++++.+.+.  .++++.+.+.+.+ +.+|++++++.+.++..++.       
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~  247 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLD  247 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEc
Confidence            4555999999999999999999999999999987653  2456666665544 46899999998888764211       


Q ss_pred             ---------------------e-e---cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231          86 ---------------------V-T---GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM  139 (148)
Q Consensus        86 ---------------------~-~---~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~  139 (148)
                                           + .   .+++++ +|++.+|++     ++|+.|+|||+|||++.+  +....|.++|+.
T Consensus       248 ~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~-----~~Ts~~~IyA~GD~~~~~--~l~~~A~~~g~~  320 (452)
T TIGR03452       248 DGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEY-----GRTSARGVWALGDVSSPY--QLKHVANAEARV  320 (452)
T ss_pred             CCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCC-----cccCCCCEEEeecccCcc--cChhHHHHHHHH
Confidence                                 0 0   135565 488999999     999999999999999875  577889999999


Q ss_pred             HHHHHH
Q psy5231         140 AALDAQ  145 (148)
Q Consensus       140 aA~~i~  145 (148)
                      ||.+|.
T Consensus       321 ~a~ni~  326 (452)
T TIGR03452       321 VKHNLL  326 (452)
T ss_pred             HHHHhc
Confidence            999986

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07846 mycothione reductase; Reviewed

Probab=99.81  E-value=6.2e-19  Score=141.27  Aligned_cols=123  Identities=19%  Similarity=0.265  Sum_probs=97.8

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------   85 (148)
                      +++++|||||++|+|+|..|+++|.+||++++.+.+..  +++..+.+.+.+ +.++++++++++.++..++.       
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~  244 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLD  244 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEEC
Confidence            45569999999999999999999999999999877642  455555555433 46899999999888764310       


Q ss_pred             ---------------------e----ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231          86 ---------------------V----TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM  139 (148)
Q Consensus        86 ---------------------~----~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~  139 (148)
                                           +    ..+++++ +|++.||++     ++|+.|+|||+|||++.+  +....|..+|+.
T Consensus       245 ~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~-----~~Ts~p~IyA~GD~~~~~--~l~~~A~~~g~~  317 (451)
T PRK07846        245 DGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEY-----QRTSAEGVFALGDVSSPY--QLKHVANHEARV  317 (451)
T ss_pred             CCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCC-----cccCCCCEEEEeecCCCc--cChhHHHHHHHH
Confidence                                 1    0135565 488999999     999999999999999876  577889999999


Q ss_pred             HHHHHH
Q psy5231         140 AALDAQ  145 (148)
Q Consensus       140 aA~~i~  145 (148)
                      +|.||.
T Consensus       318 ~a~ni~  323 (451)
T PRK07846        318 VQHNLL  323 (451)
T ss_pred             HHHHHc
Confidence            999986

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.81  E-value=5.6e-19  Score=140.47  Aligned_cols=127  Identities=22%  Similarity=0.264  Sum_probs=99.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--------------CCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--------------AKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--------------g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      +++|||||++|+|+|..|+.+              +.+||++++.+++..  ++...+.+++.|++.||++++++.+.++
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v  254 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEV  254 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEE
Confidence            449999999999999999863              689999999876532  4567777888888999999999999988


Q ss_pred             ecCCe-----------------------ee--cceeec-CCeEEecCCCCccccc-CCCCCeEEecccCccc---cchhH
Q psy5231          81 IGNNT-----------------------VT--GQLEMN-DGYIKTKLNKKTGYTS-TNISGVFCRWRCTRLY---FIDKQ  130 (148)
Q Consensus        81 ~~~~~-----------------------~~--~~~~~~-~g~i~vd~~~~~~~~~-t~~~~vya~GD~~~~~---~~~~~  130 (148)
                      .++..                       +.  .+++++ +|+|.||++     ++ |+.|+|||+|||+..+   .++..
T Consensus       255 ~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~-----l~~~~~~~IfAiGD~a~~~~~~~~~~~  329 (424)
T PTZ00318        255 LDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDH-----LRVKPIPNVFALGDCAANEERPLPTLA  329 (424)
T ss_pred             eCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCC-----cccCCCCCEEEEeccccCCCCCCCCch
Confidence            65432                       00  123444 489999998     77 6999999999999742   12467


Q ss_pred             HHHHHHHHHHHHHHHhhC
Q psy5231         131 LLALGSGCMAALDAQRYL  148 (148)
Q Consensus       131 ~~A~~~G~~aA~~i~~~l  148 (148)
                      ..|..+|..+|.||.+.|
T Consensus       330 ~~A~~qg~~~A~ni~~~l  347 (424)
T PTZ00318        330 QVASQQGVYLAKEFNNEL  347 (424)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            889999999999998753

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.81  E-value=1.1e-18  Score=140.42  Aligned_cols=125  Identities=14%  Similarity=0.170  Sum_probs=100.2

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEec---CCe---
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIG---NNT---   85 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~---~~~---   85 (148)
                      .+++++|||||++|+|+|..|+++|.+||++++.+.+..  ++.+.+.+.+.|++.||++++++.+.++..   +..   
T Consensus       179 ~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~  258 (472)
T PRK05976        179 LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIV  258 (472)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEE
Confidence            345669999999999999999999999999999876532  466777777788889999999999888762   111   


Q ss_pred             ---------e------------e--c-------ceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHH
Q psy5231          86 ---------V------------T--G-------QLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALG  135 (148)
Q Consensus        86 ---------~------------~--~-------~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~  135 (148)
                               +            +  .       ++..+.+++.+|++     ++|+.|+||++|||++.+  +....|..
T Consensus       259 ~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~-----l~ts~~~IyAiGD~~~~~--~~~~~A~~  331 (472)
T PRK05976        259 AEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDF-----CQTKERHIYAIGDVIGEP--QLAHVAMA  331 (472)
T ss_pred             EEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCC-----cccCCCCEEEeeecCCCc--ccHHHHHH
Confidence                     0            0  0       11223578999998     999999999999998765  57889999


Q ss_pred             HHHHHHHHHH
Q psy5231         136 SGCMAALDAQ  145 (148)
Q Consensus       136 ~G~~aA~~i~  145 (148)
                      +|+.||.+|.
T Consensus       332 ~g~~aa~~i~  341 (472)
T PRK05976        332 EGEMAAEHIA  341 (472)
T ss_pred             HHHHHHHHHc
Confidence            9999999875

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.81  E-value=1.2e-18  Score=139.08  Aligned_cols=124  Identities=19%  Similarity=0.172  Sum_probs=100.2

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------   85 (148)
                      +++++|||||++|+|+|..|++.|.+||++++.+.+.  .+++..+.+.+.|++.||++++++++.++..++.       
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~  236 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTE  236 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEEC
Confidence            4555999999999999999999999999999987763  2566677777788889999999999988864321       


Q ss_pred             ----------e-----------e---cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHH
Q psy5231          86 ----------V-----------T---GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMA  140 (148)
Q Consensus        86 ----------~-----------~---~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~a  140 (148)
                                +           .   .++.++ .|++.+|++     ++|+.|+|||+|||++.+  .....|..+|+.+
T Consensus       237 g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~-----~~t~~~~IyaiGD~~~~~--~~~~~a~~~~~~~  309 (438)
T PRK07251        237 DETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDY-----CQTSVPGVFAVGDVNGGP--QFTYISLDDFRIV  309 (438)
T ss_pred             CeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCC-----cccCCCCEEEeeecCCCc--ccHhHHHHHHHHH
Confidence                      0           0   123344 378999998     999999999999999876  5788899999999


Q ss_pred             HHHHH
Q psy5231         141 ALDAQ  145 (148)
Q Consensus       141 A~~i~  145 (148)
                      +.++.
T Consensus       310 ~~~~~  314 (438)
T PRK07251        310 FGYLT  314 (438)
T ss_pred             HHHHc
Confidence            87764

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.80  E-value=1.2e-18  Score=136.52  Aligned_cols=129  Identities=21%  Similarity=0.226  Sum_probs=100.5

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      ...++++    +|||||++|+|+|..|++.|.+|+++++.+.+..   ++...+.+.+.|++.||++++++.+.++..+.
T Consensus       138 ~~~~~~v----vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~  213 (377)
T PRK04965        138 LRDAQRV----LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD  213 (377)
T ss_pred             hhcCCeE----EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccC
Confidence            3456777    9999999999999999999999999999876532   45566777778888999999999998886532


Q ss_pred             e----------------------------ee--cceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc--chhHHH
Q psy5231          85 T----------------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--IDKQLL  132 (148)
Q Consensus        85 ~----------------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--~~~~~~  132 (148)
                      .                            +.  .++..+.| +.+|++     ++|+.|+|||+|||+..++  .+.+..
T Consensus       214 ~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~g-i~vd~~-----l~ts~~~VyA~GD~a~~~~~~~~~~~~  287 (377)
T PRK04965        214 SGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRG-IVVDSY-----LQTSAPDIYALGDCAEINGQVLPFLQP  287 (377)
T ss_pred             CEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCCC-EEECCC-----cccCCCCEEEeeecEeECCceeehHHH
Confidence            1                            00  12333444 889998     9999999999999986531  235667


Q ss_pred             HHHHHHHHHHHHHh
Q psy5231         133 ALGSGCMAALDAQR  146 (148)
Q Consensus       133 A~~~G~~aA~~i~~  146 (148)
                      |..+|+.||.||..
T Consensus       288 a~~~g~~~a~n~~g  301 (377)
T PRK04965        288 IQLSAMALAKNLLG  301 (377)
T ss_pred             HHHHHHHHHHHhcC
Confidence            88999999999853

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.80  E-value=8.8e-19  Score=139.75  Aligned_cols=124  Identities=19%  Similarity=0.329  Sum_probs=99.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--------
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--------   85 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--------   85 (148)
                      +++|+|||++|+|+|..|++.|++|+++++.+++..   ++++.+.+.+.|++.||++++++++.++..++.        
T Consensus       151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~  230 (444)
T PRK09564        151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDK  230 (444)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCC
Confidence            349999999999999999999999999998776432   466777888888889999999999998864321        


Q ss_pred             --------------------ee-cceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc--------chhHHHHHH
Q psy5231          86 --------------------VT-GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDKQLLALG  135 (148)
Q Consensus        86 --------------------~~-~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~~~~A~~  135 (148)
                                          +. .+++++ +|+|.||++     ++|+.|+|||+|||++.+.        .+....|..
T Consensus       231 ~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~-----~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~  305 (444)
T PRK09564        231 GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEY-----GETSIENIYAAGDCATIYNIVSNKNVYVPLATTANK  305 (444)
T ss_pred             CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCC-----cccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHH
Confidence                                00 134554 488999998     8999999999999987420        135678999


Q ss_pred             HHHHHHHHHH
Q psy5231         136 SGCMAALDAQ  145 (148)
Q Consensus       136 ~G~~aA~~i~  145 (148)
                      +|+.+|.||.
T Consensus       306 qg~~~a~ni~  315 (444)
T PRK09564        306 LGRMVGENLA  315 (444)
T ss_pred             HHHHHHHHhc
Confidence            9999999985

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.80  E-value=1.8e-18  Score=138.65  Aligned_cols=125  Identities=20%  Similarity=0.206  Sum_probs=100.7

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--------   84 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--------   84 (148)
                      +++++|||||.+|+|+|..|++.|.+||++++.+.+..  ++...+.+.+.|++.||++++++.+.++..++        
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~  249 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENK  249 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence            45569999999999999999999999999999876532  45667777778888999999999888765321        


Q ss_pred             -----e-------e--------e------cceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231          85 -----T-------V--------T------GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG  137 (148)
Q Consensus        85 -----~-------~--------~------~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G  137 (148)
                           .       +        .      .++.++. |++.+|+.     ++|+.|+||++|||+..+  +....|..+|
T Consensus       250 ~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~-----l~t~~~~IyaiGD~~~~~--~~~~~A~~~g  322 (461)
T TIGR01350       250 GGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEY-----MRTNVPGIYAIGDVIGGP--MLAHVASHEG  322 (461)
T ss_pred             CCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCC-----cccCCCCEEEeeecCCCc--ccHHHHHHHH
Confidence                 1       0        0      0233443 78999988     999999999999999766  5889999999


Q ss_pred             HHHHHHHHh
Q psy5231         138 CMAALDAQR  146 (148)
Q Consensus       138 ~~aA~~i~~  146 (148)
                      +.||.+|..
T Consensus       323 ~~aa~~i~~  331 (461)
T TIGR01350       323 IVAAENIAG  331 (461)
T ss_pred             HHHHHHHcC
Confidence            999999863

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.79  E-value=2e-18  Score=136.19  Aligned_cols=126  Identities=16%  Similarity=0.145  Sum_probs=98.1

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-   85 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-   85 (148)
                      .++++    +|||||.+|+|+|..|+++|.+||++++.+.+..   .+...+.+.+.+++.||++++++.+.++..++. 
T Consensus       143 ~~~~v----vViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~  218 (396)
T PRK09754        143 PERSV----VIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKV  218 (396)
T ss_pred             cCCeE----EEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEE
Confidence            45666    9999999999999999999999999999877632   345566677777789999999999988764221 


Q ss_pred             --------------------------ee--cceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc-------chhH
Q psy5231          86 --------------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF-------IDKQ  130 (148)
Q Consensus        86 --------------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~-------~~~~  130 (148)
                                                +.  .++.. ++.|.+|++     ++|+.|+|||+|||+..+.       ..++
T Consensus       219 ~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~-----~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~  292 (396)
T PRK09754        219 ELTLQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEA-----CRTCDPAIFAGGDVAITRLDNGALHRCESW  292 (396)
T ss_pred             EEEECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCC-----CccCCCCEEEccceEeeeCCCCCEEEECcH
Confidence                                      00  12222 256899999     9999999999999985321       1356


Q ss_pred             HHHHHHHHHHHHHHH
Q psy5231         131 LLALGSGCMAALDAQ  145 (148)
Q Consensus       131 ~~A~~~G~~aA~~i~  145 (148)
                      ..|..+|+.||.||.
T Consensus       293 ~~A~~qg~~aa~ni~  307 (396)
T PRK09754        293 ENANNQAQIAAAAML  307 (396)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            789999999999985

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.79  E-value=2e-18  Score=135.46  Aligned_cols=128  Identities=18%  Similarity=0.196  Sum_probs=104.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-------------eEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-------------KVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKII   81 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-------------~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~   81 (148)
                      +++|+|||++|+|+|.+|+++..             +|+||++.+++..  ++.+++++++.|++.||++.+++.|++++
T Consensus       157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~  236 (405)
T COG1252         157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVT  236 (405)
T ss_pred             EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEEC
Confidence            45999999999999999987632             8999999988754  57788888999999999999999999998


Q ss_pred             cCCe------------------------e-e--cceeecC-CeEEecCCCCcccccCCCCCeEEecccCcccc----chh
Q psy5231          82 GNNT------------------------V-T--GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF----IDK  129 (148)
Q Consensus        82 ~~~~------------------------~-~--~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~----~~~  129 (148)
                      ++..                        + .  .+.+.|+ |++.||+.+    ...+.|+||++|||+..+.    ++.
T Consensus       237 ~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L----~~~~~~~IFa~GD~A~~~~~~p~P~t  312 (405)
T COG1252         237 PDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTL----QVPGHPDIFAAGDCAAVIDPRPVPPT  312 (405)
T ss_pred             CCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCc----ccCCCCCeEEEeccccCCCCCCCCCh
Confidence            7643                        1 1  1244564 999999995    5568999999999986542    256


Q ss_pred             HHHHHHHHHHHHHHHHhhC
Q psy5231         130 QLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       130 ~~~A~~~G~~aA~~i~~~l  148 (148)
                      ...|..+|..+|.||.+.|
T Consensus       313 AQ~A~Qqg~~~a~ni~~~l  331 (405)
T COG1252         313 AQAAHQQGEYAAKNIKARL  331 (405)
T ss_pred             hHHHHHHHHHHHHHHHHHh
Confidence            7888999999999998764

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.78  E-value=3.1e-18  Score=136.16  Aligned_cols=127  Identities=22%  Similarity=0.312  Sum_probs=100.4

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC-C--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL-R--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-   85 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-   85 (148)
                      .++++    +|||||++|+|+|..|++.|.+||++++.+.+ .  .++...+.+.+.|++.||++++++.+.++..++. 
T Consensus       136 ~~~~v----vViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~  211 (427)
T TIGR03385       136 KVENV----VIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERV  211 (427)
T ss_pred             CCCeE----EEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCE
Confidence            34555    99999999999999999999999999998765 2  2456667777888889999999999988864321 


Q ss_pred             --------------------------ee-cceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc--------chh
Q psy5231          86 --------------------------VT-GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDK  129 (148)
Q Consensus        86 --------------------------~~-~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~  129 (148)
                                                +. .++.++ .|++.+|+.     ++|+.|+|||+|||+..+.        .+.
T Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~-----~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~  286 (427)
T TIGR03385       212 KVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEK-----FQTSVPNIYAAGDVAESHNIITKKPAWVPL  286 (427)
T ss_pred             EEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCC-----cEeCCCCEEEeeeeEEeeeccCCCceeeec
Confidence                                      00 134455 388999998     9999999999999986420        235


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy5231         130 QLLALGSGCMAALDAQ  145 (148)
Q Consensus       130 ~~~A~~~G~~aA~~i~  145 (148)
                      ...|..+|+.||.||.
T Consensus       287 ~~~A~~~g~~~a~ni~  302 (427)
T TIGR03385       287 AWGANKMGRIAGENIA  302 (427)
T ss_pred             hHHHHHHHHHHHHHhc
Confidence            7788999999999985

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.78  E-value=4.3e-18  Score=136.55  Aligned_cols=125  Identities=26%  Similarity=0.351  Sum_probs=94.6

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--   84 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--   84 (148)
                      .+++|    +|||||++|+|+|..|.+.|. +||++++++.  +.......+.+.    +.||++++++.+.++.+++  
T Consensus       272 ~g~~V----vViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~----~~GV~i~~~~~v~~i~~~~~~  343 (457)
T PRK11749        272 VGKRV----VVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAK----EEGVEFEWLAAPVEILGDEGR  343 (457)
T ss_pred             CCCeE----EEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH----HCCCEEEecCCcEEEEecCCc
Confidence            46666    999999999999999999987 8999998653  333334334443    6899999888776664221  


Q ss_pred             --------------------------e--------------------e-e--cceeec-CCeEEecCCCCcccccCCCCC
Q psy5231          85 --------------------------T--------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISG  114 (148)
Q Consensus        85 --------------------------~--------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~  114 (148)
                                                .                    + .  .++.++ .|++.+|+..    ++|+.|+
T Consensus       344 ~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~----~~Ts~~~  419 (457)
T PRK11749        344 VTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDET----GRTSLPG  419 (457)
T ss_pred             eEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCC----CccCCCC
Confidence                                      0                    0 0  123344 3778888832    8999999


Q ss_pred             eEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         115 VFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       115 vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      |||+|||+..+  +++..|+.+|+.||.+|+++|
T Consensus       420 VfA~GD~~~~~--~~~~~A~~~G~~aA~~I~~~l  451 (457)
T PRK11749        420 VFAGGDIVTGA--ATVVWAVGDGKDAAEAIHEYL  451 (457)
T ss_pred             EEEeCCcCCCc--hHHHHHHHHHHHHHHHHHHHH
Confidence            99999998665  688999999999999999886

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.78  E-value=3.6e-18  Score=132.85  Aligned_cols=126  Identities=25%  Similarity=0.187  Sum_probs=93.5

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCe-EEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC----
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKK-VTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN----   84 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~----   84 (148)
                      .|+++    +|||+|++|+|+|..|.+.|.+ |+++++++.....  ....+.+.|+.+||++++++.+.++++++    
T Consensus       171 ~g~~v----vViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~--~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~  244 (352)
T PRK12770        171 EGKKV----VVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP--AGKYEIERLIARGVEFLELVTPVRIIGEGRVEG  244 (352)
T ss_pred             CCCEE----EEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC--CCHHHHHHHHHcCCEEeeccCceeeecCCcEeE
Confidence            36677    9999999999999999998986 9999986543211  11222334557899999877655543210    


Q ss_pred             ---------------------------e-----------------ee---cceeecC-CeEEecCCCCcccccCCCCCeE
Q psy5231          85 ---------------------------T-----------------VT---GQLEMND-GYIKTKLNKKTGYTSTNISGVF  116 (148)
Q Consensus        85 ---------------------------~-----------------~~---~~~~~~~-g~i~vd~~~~~~~~~t~~~~vy  116 (148)
                                                 .                 +.   .++.++. +++.+|+.     ++|+.|+||
T Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~-----~~t~~~~vy  319 (352)
T PRK12770        245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEK-----HMTSREGVF  319 (352)
T ss_pred             EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCC-----cccCCCCEE
Confidence                                       0                 00   1233443 77889988     899999999


Q ss_pred             EecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         117 CRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       117 a~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ++|||+..+  ..+..|+.+|+.||.+|.++|
T Consensus       320 aiGD~~~~~--~~~~~A~~~g~~aa~~i~~~l  349 (352)
T PRK12770        320 AAGDVVTGP--SKIGKAIKSGLRAAQSIHEWL  349 (352)
T ss_pred             EEcccccCc--chHHHHHHHHHHHHHHHHHHH
Confidence            999998866  588999999999999999876

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.78  E-value=4.9e-18  Score=145.71  Aligned_cols=125  Identities=26%  Similarity=0.321  Sum_probs=93.9

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C-
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N-   84 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~-   84 (148)
                      .||+|    +|||||++|+|+|..+.++|.+||+++|++.  ++..+...+.+.    +.|+++++.+.+.++.++  + 
T Consensus       446 ~Gk~V----vVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~----eeGV~~~~~~~p~~i~~d~~~~  517 (944)
T PRK12779        446 KGKEV----FVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHAL----EEGINLAVLRAPREFIGDDHTH  517 (944)
T ss_pred             CCCEE----EEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHH----HCCCEEEeCcceEEEEecCCCC
Confidence            56777    9999999999999999999999999998753  333333233332    579999887666655321  0 


Q ss_pred             -----------------------------e------------------e-e--cceeec-CCeEEecCCCCcccccCCCC
Q psy5231          85 -----------------------------T------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNIS  113 (148)
Q Consensus        85 -----------------------------~------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~  113 (148)
                                                   .                  + .  .+++++ .|.|.+|+..    ++||.|
T Consensus       518 ~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~----~~Ts~p  593 (944)
T PRK12779        518 FVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGS----QRTSIK  593 (944)
T ss_pred             EEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCC----CccCCC
Confidence                                         0                  0 0  124444 3778888654    899999


Q ss_pred             CeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         114 GVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       114 ~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +|||+|||+.++  ..+..|+++|+.||.+|++||
T Consensus       594 gVFAaGD~~~G~--~~vv~Ai~eGr~AA~~I~~~L  626 (944)
T PRK12779        594 GVYSGGDAARGG--STAIRAAGDGQAAAKEIVGEI  626 (944)
T ss_pred             CEEEEEcCCCCh--HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999776  689999999999999999986

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.78  E-value=7.5e-18  Score=139.86  Aligned_cols=124  Identities=9%  Similarity=0.107  Sum_probs=97.4

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHH-hcCCcEEEcCceEEEEecCC-------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKV-NEGKIDIKLKHIVHKIIGNN-------   84 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l-~~~~v~i~~~~~v~~i~~~~-------   84 (148)
                      +++++|||||.+|+|+|..|+++|++||++++.+.+..  +++..+.+.+.+ ++.||++++++.++++..++       
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v  391 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVII  391 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEE
Confidence            44559999999999999999999999999999887643  556666666654 56899999998887664210       


Q ss_pred             ---------------------e------------------ee---cceeecCCeEEecCCCCcccccCC------CCCeE
Q psy5231          85 ---------------------T------------------VT---GQLEMNDGYIKTKLNKKTGYTSTN------ISGVF  116 (148)
Q Consensus        85 ---------------------~------------------~~---~~~~~~~g~i~vd~~~~~~~~~t~------~~~vy  116 (148)
                                           .                  +.   .++.+++|+|.||++     ++|+      +|+||
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~-----lqTs~~~~~~v~~IY  466 (659)
T PTZ00153        392 GHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEH-----LRVLREDQEVYDNIF  466 (659)
T ss_pred             EEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCC-----CCcCCCCCCCCCCEE
Confidence                                 1                  00   023344588999999     8987      69999


Q ss_pred             EecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231         117 CRWRCTRLYFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus       117 a~GD~~~~~~~~~~~~A~~~G~~aA~~i~  145 (148)
                      |+|||++.+  .....|..+|+.||.+|.
T Consensus       467 AiGDv~g~~--~La~~A~~qg~~aa~ni~  493 (659)
T PTZ00153        467 CIGDANGKQ--MLAHTASHQALKVVDWIE  493 (659)
T ss_pred             EEEecCCCc--cCHHHHHHHHHHHHHHHc
Confidence            999999876  578899999999999985

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.78  E-value=4.5e-18  Score=144.70  Aligned_cols=127  Identities=16%  Similarity=0.138  Sum_probs=101.9

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--   84 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--   84 (148)
                      .++++    +|||||++|+|+|..|+++|.+|+++++.+.+.   .++...+.+++.|++.||++++++.++++..++  
T Consensus       144 ~~k~v----vVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~  219 (847)
T PRK14989        144 RSKRG----AVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVE  219 (847)
T ss_pred             cCCeE----EEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCC
Confidence            45555    999999999999999999999999999987753   256667778888889999999999998886421  


Q ss_pred             -e---------------------------ee--cceeecC-CeEEecCCCCcccccCCCCCeEEecccCcccc--chhHH
Q psy5231          85 -T---------------------------VT--GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--IDKQL  131 (148)
Q Consensus        85 -~---------------------------~~--~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--~~~~~  131 (148)
                       .                           +.  .++++++ |+|.||++     ++|+.|+|||+|||+..++  +..+.
T Consensus       220 ~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~-----l~Ts~p~IYAiGD~a~~~~~~~gl~~  294 (847)
T PRK14989        220 ARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDS-----CQTSDPDIYAIGECASWNNRVFGLVA  294 (847)
T ss_pred             ceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCC-----CcCCCCCEEEeecceeEcCcccccHH
Confidence             0                           11  2355554 78999999     9999999999999997642  23567


Q ss_pred             HHHHHHHHHHHHHH
Q psy5231         132 LALGSGCMAALDAQ  145 (148)
Q Consensus       132 ~A~~~G~~aA~~i~  145 (148)
                      .|..+|+.||.+|.
T Consensus       295 ~a~~~a~vaa~~i~  308 (847)
T PRK14989        295 PGYKMAQVAVDHLL  308 (847)
T ss_pred             HHHHHHHHHHHHhc
Confidence            88899999999885

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.78  E-value=8.6e-18  Score=136.18  Aligned_cols=124  Identities=17%  Similarity=0.134  Sum_probs=92.8

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-e-------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-T-------   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-~-------   85 (148)
                      +++++|||||++|+|+|..|+++|.+||++++...++ .+++..+.+++.|++.||++++++.+.++.... .       
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~  261 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSD  261 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECC
Confidence            4566999999999999999999999999999853333 256677788888888999999998887775321 0       


Q ss_pred             ---------------------e---ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHH
Q psy5231          86 ---------------------V---TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMA  140 (148)
Q Consensus        86 ---------------------~---~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~a  140 (148)
                                           +   ..+++++. |++.+++      .+|+.|+|||+|||+... +..+..|..+|+.+
T Consensus       262 g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~------~~Ts~p~IyAiGDv~~~~-~~l~~~A~~~g~~a  334 (499)
T PTZ00052        262 GTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPN------DCTNIPNIFAVGDVVEGR-PELTPVAIKAGILL  334 (499)
T ss_pred             CCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCC------CcCCCCCEEEEEEecCCC-cccHHHHHHHHHHH
Confidence                                 0   00123332 4443432      379999999999998532 25788999999999


Q ss_pred             HHHHH
Q psy5231         141 ALDAQ  145 (148)
Q Consensus       141 A~~i~  145 (148)
                      |.+|.
T Consensus       335 a~ni~  339 (499)
T PTZ00052        335 ARRLF  339 (499)
T ss_pred             HHHHh
Confidence            99985

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.77  E-value=6.6e-18  Score=142.61  Aligned_cols=125  Identities=27%  Similarity=0.365  Sum_probs=94.4

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCe-EEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKK-VTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-   84 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-   84 (148)
                      ..||+|    +|||||++|+|+|..+.++|.+ ||++++++.  ++......+.+.    +.||++++++.+.++..+. 
T Consensus       568 ~~gk~V----vVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~----~~GV~i~~~~~~~~i~~~~~  639 (752)
T PRK12778        568 KFGKKV----AVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAK----EEGIEFLTLHNPIEYLADEK  639 (752)
T ss_pred             cCCCcE----EEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH----HcCCEEEecCcceEEEECCC
Confidence            356777    9999999999999999999987 999998753  333333333333    6899998776555543110 


Q ss_pred             --------------------------------e-----------------ee---cceeecC-CeEEecCCCCcccccCC
Q psy5231          85 --------------------------------T-----------------VT---GQLEMND-GYIKTKLNKKTGYTSTN  111 (148)
Q Consensus        85 --------------------------------~-----------------~~---~~~~~~~-g~i~vd~~~~~~~~~t~  111 (148)
                                                      .                 +.   .++.++. |+|.+|+.     ++|+
T Consensus       640 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~-----~~Ts  714 (752)
T PRK12778        640 GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEE-----MQSS  714 (752)
T ss_pred             CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCC-----CCCC
Confidence                                            0                 00   1344553 78889988     8999


Q ss_pred             CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         112 ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       112 ~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      .|+|||+|||+.++  .++..|+++|+.||.+|++||
T Consensus       715 ~~gVfA~GD~~~g~--~~vv~Av~~G~~AA~~I~~~L  749 (752)
T PRK12778        715 IPGIYAGGDIVRGG--ATVILAMGDGKRAAAAIDEYL  749 (752)
T ss_pred             CCCEEEeCCccCCc--HHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999766  689999999999999999987

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.76  E-value=1.5e-17  Score=138.48  Aligned_cols=126  Identities=24%  Similarity=0.321  Sum_probs=93.7

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC--
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--   83 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--   83 (148)
                      ..|++|    +|||||++|+|+|..+.++|. +||+++|++.  ++..+...+.+.    +.||++++++.+.++.++  
T Consensus       321 ~~gk~V----vVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~----~eGV~i~~~~~~~~i~~~~~  392 (652)
T PRK12814        321 HPGKKV----VVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEAL----AEGVSLRELAAPVSIERSEG  392 (652)
T ss_pred             cCCCeE----EEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH----HcCCcEEeccCcEEEEecCC
Confidence            456666    999999999999999999985 6999998753  444333333333    479999887766554311  


Q ss_pred             --------------------------C---e-----------------ee--cceeecC-CeEEecCCCCcccccCCCCC
Q psy5231          84 --------------------------N---T-----------------VT--GQLEMND-GYIKTKLNKKTGYTSTNISG  114 (148)
Q Consensus        84 --------------------------~---~-----------------~~--~~~~~~~-g~i~vd~~~~~~~~~t~~~~  114 (148)
                                                +   .                 +.  .++.++. |++.+|+.+    ++|+.|+
T Consensus       393 ~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~----~~Ts~pg  468 (652)
T PRK12814        393 GLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPET----LQTSVAG  468 (652)
T ss_pred             eEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCC----CcCCCCC
Confidence                                      0   0                 00  1244443 788898754    8999999


Q ss_pred             eEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         115 VFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       115 vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      |||+||++..+  .++..|+++|+.||.+|++||
T Consensus       469 VfA~GDv~~g~--~~v~~Ai~~G~~AA~~I~~~L  500 (652)
T PRK12814        469 VFAGGDCVTGA--DIAINAVEQGKRAAHAIDLFL  500 (652)
T ss_pred             EEEcCCcCCCc--hHHHHHHHHHHHHHHHHHHHH
Confidence            99999998766  688999999999999999986

>KOG0405|consensus

Probab=99.75  E-value=3.9e-18  Score=129.97  Aligned_cols=127  Identities=20%  Similarity=0.234  Sum_probs=105.6

Q ss_pred             cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC-Cc-hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-----
Q psy5231          13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL-RC-EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-----   85 (148)
Q Consensus        13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~-~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-----   85 (148)
                      ..||+++|+|+|++|+|+|..++..|.+++|+-|.+++ +. ++.+.+.+.++|+..||++|.++.+.++.....     
T Consensus       187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~  266 (478)
T KOG0405|consen  187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELV  266 (478)
T ss_pred             hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEE
Confidence            34566699999999999999999999999999998876 33 677888899999999999999999888764321     


Q ss_pred             ---------------------------ee-cceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231          86 ---------------------------VT-GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS  136 (148)
Q Consensus        86 ---------------------------~~-~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~  136 (148)
                                                 +. -+++++. |.|.+|++     ++|++|+||++||+++.-  .....|+.+
T Consensus       267 i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeY-----q~Tnvp~I~avGDv~gk~--~LTPVAiaa  339 (478)
T KOG0405|consen  267 ITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEY-----QNTNVPSIWAVGDVTGKI--NLTPVAIAA  339 (478)
T ss_pred             EEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEecc-----ccCCCCceEEeccccCcE--ecchHHHhh
Confidence                                       11 2567774 99999999     999999999999999875  577889999


Q ss_pred             HHHHHHHHHh
Q psy5231         137 GCMAALDAQR  146 (148)
Q Consensus       137 G~~aA~~i~~  146 (148)
                      |+.-|..+..
T Consensus       340 gr~la~rlF~  349 (478)
T KOG0405|consen  340 GRKLANRLFG  349 (478)
T ss_pred             hhhHHHHhhc
Confidence            9988876643

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.75  E-value=2.4e-17  Score=137.37  Aligned_cols=129  Identities=19%  Similarity=0.132  Sum_probs=92.4

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC--
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--   83 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--   83 (148)
                      ..||+|    +|||||++|+|+|..+.+.|. +||+++|++.  ++..+...+.+.    +.||++++++.+.++..+  
T Consensus       466 ~~gk~V----vVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~----~~Gv~~~~~~~~~~i~~~~~  537 (654)
T PRK12769        466 TAGLNV----VVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAR----EEGANFEFNVQPVALELNEQ  537 (654)
T ss_pred             CCCCeE----EEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHH----HcCCeEEeccCcEEEEECCC
Confidence            356666    999999999999998888875 7999998754  344444444444    689999987766665311  


Q ss_pred             Ce------------------------------------------e-------e--cceeec-CCeEEecCCCCcccccCC
Q psy5231          84 NT------------------------------------------V-------T--GQLEMN-DGYIKTKLNKKTGYTSTN  111 (148)
Q Consensus        84 ~~------------------------------------------~-------~--~~~~~~-~g~i~vd~~~~~~~~~t~  111 (148)
                      +.                                          +       .  .+++++ +|.|.+|+.. ...++|+
T Consensus       538 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~-~~~~~Ts  616 (654)
T PRK12769        538 GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVES-QYRYQTS  616 (654)
T ss_pred             CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCc-ccCcccC
Confidence            00                                          0       0  023344 3667777410 0017999


Q ss_pred             CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         112 ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       112 ~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      .|+|||+||++.++  ..+..|+++|+.||.+|++||
T Consensus       617 ~~gVfAaGD~~~g~--~~vv~Ai~~Gr~AA~~I~~~L  651 (654)
T PRK12769        617 NPKIFAGGDAVRGA--DLVVTAMAEGRHAAQGIIDWL  651 (654)
T ss_pred             CCCEEEcCCcCCCC--cHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998776  688999999999999999987

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.73  E-value=1.1e-16  Score=128.89  Aligned_cols=124  Identities=21%  Similarity=0.184  Sum_probs=92.4

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--   84 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--   84 (148)
                      .+|++    +|+|||++|+++|..+.+.| .+||+++|++.  +...+...+++.    +.||++++++.+.++..+.  
T Consensus       281 ~gk~V----vVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~----~~GV~~~~~~~~~~i~~~~~g  352 (467)
T TIGR01318       281 EGKRV----VVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAR----EEGVEFLFNVQPVYIECDEDG  352 (467)
T ss_pred             CCCEE----EEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHH----hcCCEEEecCCcEEEEECCCC
Confidence            45666    99999999999999999998 47999998764  333444444443    5899999887776664210  


Q ss_pred             -------------------------------e-----------e-e--------cceeec-CCeEEec----CCCCcccc
Q psy5231          85 -------------------------------T-----------V-T--------GQLEMN-DGYIKTK----LNKKTGYT  108 (148)
Q Consensus        85 -------------------------------~-----------~-~--------~~~~~~-~g~i~vd----~~~~~~~~  108 (148)
                                                     .           . .        .+++++ .|++.+|    ..     +
T Consensus       353 ~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~-----~  427 (467)
T TIGR01318       353 RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLP-----Y  427 (467)
T ss_pred             eEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccC-----c
Confidence                                           0           0 0        012333 3677787    44     8


Q ss_pred             cCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         109 STNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       109 ~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +|+.|+||++||++..+  ..+..|+.+|+.||.+|++||
T Consensus       428 ~T~~~gVfa~GD~~~~~--~~~~~Ai~~G~~aA~~i~~~L  465 (467)
T TIGR01318       428 QTTNPKIFAGGDAVRGA--DLVVTAVAEGRQAAQGILDWL  465 (467)
T ss_pred             cCCCCCEEEECCcCCCc--cHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999998776  578899999999999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.73  E-value=6.9e-17  Score=139.59  Aligned_cols=131  Identities=28%  Similarity=0.298  Sum_probs=92.6

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCC--CchHHHHHHHHhHHhcCCcEEEcCceEEEEecC-
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN-   83 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~--~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~-   83 (148)
                      ...||+|    +|||||++|+|+|..+.+.|. .|+++.|+...  +......+.++    +.||++++.+.+.++..+ 
T Consensus       568 ~~~Gk~V----vVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~----eeGI~~~~~~~p~~i~~~~  639 (1006)
T PRK12775        568 ISLGKSV----VVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAK----EEGIDFFFLHSPVEIYVDA  639 (1006)
T ss_pred             ccCCCEE----EEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHH----hCCCEEEecCCcEEEEeCC
Confidence            3456777    999999999999999999986 58888876432  22233233333    689999988776665321 


Q ss_pred             -C------------------------------e-----------------e-e--cceeecC-CeEEecCCCCcccccCC
Q psy5231          84 -N------------------------------T-----------------V-T--GQLEMND-GYIKTKLNKKTGYTSTN  111 (148)
Q Consensus        84 -~------------------------------~-----------------~-~--~~~~~~~-g~i~vd~~~~~~~~~t~  111 (148)
                       +                              .                 + .  .++.++. |.|.+|+......++||
T Consensus       640 ~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts  719 (1006)
T PRK12775        640 EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTN  719 (1006)
T ss_pred             CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCC
Confidence             0                              0                 0 0  1234443 77888861000018999


Q ss_pred             CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         112 ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       112 ~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +|+|||+||++.++  .++..|+++|+.||.+|++||
T Consensus       720 ~pgVFAaGDv~~G~--~~vv~Ai~~Gr~AA~~I~~~L  754 (1006)
T PRK12775        720 LPGVFAGGDIVTGG--ATVILAMGAGRRAARSIATYL  754 (1006)
T ss_pred             CCCEEEecCcCCCc--cHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998776  689999999999999999986

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.73  E-value=7.3e-17  Score=136.74  Aligned_cols=126  Identities=18%  Similarity=0.197  Sum_probs=98.9

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-   85 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-   85 (148)
                      .++++    +|||||++|+|+|..|++.|.+|+++++.+.+.   .++...+.+.+.|++.||++++++.+.++.++.. 
T Consensus       139 ~~k~v----vVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~  214 (785)
T TIGR02374       139 RFKKA----AVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKA  214 (785)
T ss_pred             cCCeE----EEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCce
Confidence            45666    999999999999999999999999999987763   2455667777788889999999998888764321 


Q ss_pred             ---------------------------ee--cceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc--chhHHHHH
Q psy5231          86 ---------------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--IDKQLLAL  134 (148)
Q Consensus        86 ---------------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--~~~~~~A~  134 (148)
                                                 +.  .+++.+ +.|.||++     ++|+.|+|||+|||+..++  +..+..|.
T Consensus       215 ~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~-----~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~  288 (785)
T TIGR02374       215 DRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDS-----MQTSDPDIYAVGECAEHNGRVYGLVAPLY  288 (785)
T ss_pred             EEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCC-----cccCCCCEEEeeecceeCCcccccHHHHH
Confidence                                       10  123333 56889998     9999999999999987542  23567788


Q ss_pred             HHHHHHHHHHH
Q psy5231         135 GSGCMAALDAQ  145 (148)
Q Consensus       135 ~~G~~aA~~i~  145 (148)
                      .+|+.||.||.
T Consensus       289 ~qa~vaA~ni~  299 (785)
T TIGR02374       289 EQAKVLADHIC  299 (785)
T ss_pred             HHHHHHHHHhc
Confidence            99999999985

>PRK13984 putative oxidoreductase; Provisional

Probab=99.71  E-value=1.8e-16  Score=131.15  Aligned_cols=121  Identities=22%  Similarity=0.216  Sum_probs=84.6

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCC------eEEEEEeC---CCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC---
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAK------KVTLIHRN---EKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN---   83 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~------~Vtlv~~~---~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~---   83 (148)
                      ++|+|||||++|+|+|..|++.+.      +|+++...   ..+........++.    +.||++++++.+.++..+   
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~~~----~~GV~i~~~~~~~~i~~~~g~  494 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGL----EEGVVIYPGWGPMEVVIENDK  494 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHHHH----HcCCEEEeCCCCEEEEccCCE
Confidence            334999999999999999998753      78887432   12333333333333    479998876544333210   


Q ss_pred             ---------------------------C-e------------------ee----cceeecCCeEEecCCCCcccccCCCC
Q psy5231          84 ---------------------------N-T------------------VT----GQLEMNDGYIKTKLNKKTGYTSTNIS  113 (148)
Q Consensus        84 ---------------------------~-~------------------~~----~~~~~~~g~i~vd~~~~~~~~~t~~~  113 (148)
                                                 . .                  +.    ..+.++.|.|.+|+.     ++|++|
T Consensus       495 v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~-----~~Ts~~  569 (604)
T PRK13984        495 VKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEY-----GQTSIP  569 (604)
T ss_pred             EEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCC-----CccCCC
Confidence                                       0 0                  00    012334578899988     999999


Q ss_pred             CeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         114 GVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       114 ~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +|||+||++..+   ++..|+++|+.||.+|++||
T Consensus       570 gVfAaGD~~~~~---~~v~Ai~~G~~AA~~I~~~L  601 (604)
T PRK13984        570 WLFAGGDIVHGP---DIIHGVADGYWAAEGIDMYL  601 (604)
T ss_pred             CEEEecCcCCch---HHHHHHHHHHHHHHHHHHHh
Confidence            999999999765   67889999999999999987

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.71  E-value=1.8e-16  Score=123.56  Aligned_cols=126  Identities=20%  Similarity=0.248  Sum_probs=94.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhc----C--CeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe---
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI----A--KKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT---   85 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~----g--~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~---   85 (148)
                      +++|+|+|++|+|+|..|++.    |  .+|+++ +.+.+.  .++...+.+.+.|++.||++++++.++++..+..   
T Consensus       147 ~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~  225 (364)
T TIGR03169       147 RLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGALILA  225 (364)
T ss_pred             eEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeC
Confidence            339999999999999999853    3  589999 444442  2355667777788889999999999988754321   


Q ss_pred             ---------------------e-ecceeec-CCeEEecCCCCcccccC-CCCCeEEecccCcccc---chhHHHHHHHHH
Q psy5231          86 ---------------------V-TGQLEMN-DGYIKTKLNKKTGYTST-NISGVFCRWRCTRLYF---IDKQLLALGSGC  138 (148)
Q Consensus        86 ---------------------~-~~~~~~~-~g~i~vd~~~~~~~~~t-~~~~vya~GD~~~~~~---~~~~~~A~~~G~  138 (148)
                                           + ..++.++ .|++.+|+.     ++| +.|+|||+|||+..+.   .+....|..+|+
T Consensus       226 ~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~-----l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~  300 (364)
T TIGR03169       226 DGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPT-----LQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAP  300 (364)
T ss_pred             CCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCc-----cccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHH
Confidence                                 0 0134454 489999998     887 9999999999985421   235678999999


Q ss_pred             HHHHHHHhhC
Q psy5231         139 MAALDAQRYL  148 (148)
Q Consensus       139 ~aA~~i~~~l  148 (148)
                      .+|.||.+.|
T Consensus       301 ~~a~ni~~~l  310 (364)
T TIGR03169       301 ILAANLRASL  310 (364)
T ss_pred             HHHHHHHHHh
Confidence            9999997653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.71  E-value=1.5e-16  Score=128.24  Aligned_cols=129  Identities=20%  Similarity=0.144  Sum_probs=88.9

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCCCchH-------HHHH-HHHhHHhcCCcEEEcCceEEE
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKLRCEK-------ILID-RLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~-------~~~~-~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      ..+|+|    +|||||++|+|+|..+.+.|. +||++++.+......       .... ...+.+++.||++++++.+.+
T Consensus       279 ~~gk~V----vVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~  354 (471)
T PRK12810        279 AKGKHV----VVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKE  354 (471)
T ss_pred             CCCCEE----EEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceE
Confidence            346666    999999999999998887764 799776543221111       0000 012233368999998877666


Q ss_pred             EecCC-------------------------e-------------------ee--cceeec-CCeEEec-CCCCcccccCC
Q psy5231          80 IIGNN-------------------------T-------------------VT--GQLEMN-DGYIKTK-LNKKTGYTSTN  111 (148)
Q Consensus        80 i~~~~-------------------------~-------------------~~--~~~~~~-~g~i~vd-~~~~~~~~~t~  111 (148)
                      +.+++                         .                   +.  .++.++ .|++.+| +.     ++|+
T Consensus       355 i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~-----~~Ts  429 (471)
T PRK12810        355 FEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNA-----YQTS  429 (471)
T ss_pred             EEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCc-----ccCC
Confidence            64210                         0                   00  023344 3778887 45     8999


Q ss_pred             CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         112 ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       112 ~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      .|+||++|||+..+  .++..|+++|+.||.+|+++|
T Consensus       430 ~~gVfa~GD~~~g~--~~~~~Av~~G~~AA~~i~~~L  464 (471)
T PRK12810        430 NPKVFAAGDMRRGQ--SLVVWAIAEGRQAARAIDAYL  464 (471)
T ss_pred             CCCEEEccccCCCc--hhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999765  578999999999999999986

>KOG1335|consensus

Probab=99.69  E-value=6.7e-17  Score=124.51  Aligned_cols=126  Identities=18%  Similarity=0.148  Sum_probs=101.2

Q ss_pred             CcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe----
Q psy5231          12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT----   85 (148)
Q Consensus        12 k~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~----   85 (148)
                      +.||++++|||+|.+|+|++....+.|.+||++|-.+.+.+  +.++.+..++.|.+.|++|++++++..++.++.    
T Consensus       208 ~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~  287 (506)
T KOG1335|consen  208 KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVE  287 (506)
T ss_pred             hhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceE
Confidence            35678899999999999999999999999999998777644  667777777777789999999999998775432    


Q ss_pred             ---------------------------ee-------cceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhH
Q psy5231          86 ---------------------------VT-------GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQ  130 (148)
Q Consensus        86 ---------------------------~~-------~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~  130 (148)
                                                 +.       -+++.|. +.+.+|..     ++|.+|+||++||+..+|  -..
T Consensus       288 i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~-----f~t~vP~i~~IGDv~~gp--MLA  360 (506)
T KOG1335|consen  288 IEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTR-----FQTKVPHIYAIGDVTLGP--MLA  360 (506)
T ss_pred             EEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecccc-----ccccCCceEEecccCCcc--hhh
Confidence                                       11       1445553 88888888     999999999999999887  466


Q ss_pred             HHHHHHHHHHHHHH
Q psy5231         131 LLALGSGCMAALDA  144 (148)
Q Consensus       131 ~~A~~~G~~aA~~i  144 (148)
                      +.|-.||..+...|
T Consensus       361 hkAeeegI~~VE~i  374 (506)
T KOG1335|consen  361 HKAEEEGIAAVEGI  374 (506)
T ss_pred             hhhhhhchhheeee
Confidence            77778886665443

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.68  E-value=7.1e-16  Score=128.31  Aligned_cols=128  Identities=20%  Similarity=0.182  Sum_probs=90.5

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCC--CchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--   84 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~--~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--   84 (148)
                      .||++    +|+|||++++++|..+.+.| .+||+++|++..  ...+.....++    +.||++++.+.++++..++  
T Consensus       450 ~gk~v----vViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~----~eGv~~~~~~~~~~i~~~~~g  521 (639)
T PRK12809        450 EGKRV----VVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAR----EEGVEFQFNVQPQYIACDEDG  521 (639)
T ss_pred             CCCeE----EEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH----HcCCeEEeccCCEEEEECCCC
Confidence            45666    99999999999999888887 589999987543  33333333333    5899999887666653210  


Q ss_pred             -------------------------------e-----------e--------e-cceeecC-CeEEecCCCCcccccCCC
Q psy5231          85 -------------------------------T-----------V--------T-GQLEMND-GYIKTKLNKKTGYTSTNI  112 (148)
Q Consensus        85 -------------------------------~-----------~--------~-~~~~~~~-g~i~vd~~~~~~~~~t~~  112 (148)
                                                     .           +        . .+++++. |++.+|+.. ...++|+.
T Consensus       522 ~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~-~~~~~Ts~  600 (639)
T PRK12809        522 RLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVG-YLPTQTHL  600 (639)
T ss_pred             eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCc-ccCcccCC
Confidence                                           0           0        0 0233332 666676420 00178999


Q ss_pred             CCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         113 SGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       113 ~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      |+|||+||++.++  .++..|+++|+.||.+|++||
T Consensus       601 ~gVfA~GD~~~g~--~~vv~Ai~~Gr~AA~~i~~~l  634 (639)
T PRK12809        601 KKVFAGGDAVHGA--DLVVTAMAAGRQAARDMLTLF  634 (639)
T ss_pred             CCEEEcCCCCCCc--hHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998766  688999999999999999986

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.68  E-value=8.2e-16  Score=131.70  Aligned_cols=123  Identities=21%  Similarity=0.232  Sum_probs=90.9

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhc-C-CeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNI-A-KKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-   84 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~-g-~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-   84 (148)
                      .||+|    +|||||++|+|+|..+.+. | ++|+++.|++.  ++..+...+...    +.||++++.+.+.++..++ 
T Consensus       667 ~GKrV----VVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~Al----eeGVe~~~~~~p~~I~~dG~  738 (1019)
T PRK09853        667 LGKHV----VVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEAL----EDGVEFKELLNPESFDADGT  738 (1019)
T ss_pred             CCCEE----EEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHH----HcCCEEEeCCceEEEEcCCc
Confidence            46666    9999999999999998887 4 58999998653  333333333333    4799999877766664110 


Q ss_pred             -------------------------e-------------------e-ecceeecC-CeEEecCCCCcccccCCCCCeEEe
Q psy5231          85 -------------------------T-------------------V-TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCR  118 (148)
Q Consensus        85 -------------------------~-------------------~-~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~  118 (148)
                                               .                   + ..++.++. |++.+|+.     ++|+.|+|||+
T Consensus       739 l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDet-----lqTs~pgVFAa  813 (1019)
T PRK09853        739 LTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDAN-----GETSLTNVYMI  813 (1019)
T ss_pred             EEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCC-----cccCCCCEEEE
Confidence                                     0                   0 01344553 78888887     99999999999


Q ss_pred             cccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231         119 WRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       119 GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |||+.++  ..+..|+++|+.||.+|.+.
T Consensus       814 GD~a~Gp--~tvv~Ai~qGr~AA~nI~~~  840 (1019)
T PRK09853        814 GDVQRGP--STIVAAIADARRAADAILSR  840 (1019)
T ss_pred             eccccCc--hHHHHHHHHHHHHHHHHhhh
Confidence            9998776  68999999999999999764

>KOG1336|consensus

Probab=99.65  E-value=1.7e-15  Score=119.30  Aligned_cols=122  Identities=20%  Similarity=0.182  Sum_probs=97.5

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe---------
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT---------   85 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~---------   85 (148)
                      |+++|+|.+|+|+|..|...+++||+|++.+.+..   .+.+.+.+++.|++.||++++++.++++..+..         
T Consensus       216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~  295 (478)
T KOG1336|consen  216 VVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLK  295 (478)
T ss_pred             EEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEec
Confidence            49999999999999999999999999998765422   466778888899999999999999998876542         


Q ss_pred             ----------------------eecceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc--------chhHHHHH
Q psy5231          86 ----------------------VTGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDKQLLAL  134 (148)
Q Consensus        86 ----------------------~~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~~~~A~  134 (148)
                                            +..+..++ .|+|.||+.     ++|++|+|||+||+++.|-        ...+..|.
T Consensus       296 dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~-----f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~  370 (478)
T KOG1336|consen  296 DGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEF-----FQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHAR  370 (478)
T ss_pred             cCCEeccCeEEEeeccccccccccccceecccCCEeehhc-----eeeccCCcccccceeecccccccccccchHHHHHH
Confidence                                  11133344 499999999     9999999999999998751        13567788


Q ss_pred             HHHHHHHHHH
Q psy5231         135 GSGCMAALDA  144 (148)
Q Consensus       135 ~~G~~aA~~i  144 (148)
                      .+|+.|..+|
T Consensus       371 ~~g~~av~ai  380 (478)
T KOG1336|consen  371 ASGRQAVKAI  380 (478)
T ss_pred             HHHHhhhhhh
Confidence            8888765554

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.64  E-value=4.9e-15  Score=127.24  Aligned_cols=124  Identities=24%  Similarity=0.290  Sum_probs=89.4

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhc-C-CeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC-
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNI-A-KKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN-   83 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~-g-~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~-   83 (148)
                      ..||+|    +|||||++|+|+|..+.+. | .+|++++|+..  ++..+.....+.    +.||++++...+.++..+ 
T Consensus       664 ~~GK~V----VVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~al----eeGVe~~~~~~p~~I~~g~  735 (1012)
T TIGR03315       664 PLGKHV----VVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEAL----EDGVDFKELLSPESFEDGT  735 (1012)
T ss_pred             ccCCeE----EEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHH----HcCCEEEeCCceEEEECCe
Confidence            346666    9999999999999998876 6 48999998653  233333333333    468998877665554310 


Q ss_pred             ----------------------Ce---------------------e-ecceeecC-CeEEecCCCCcccccCCCCCeEEe
Q psy5231          84 ----------------------NT---------------------V-TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCR  118 (148)
Q Consensus        84 ----------------------~~---------------------~-~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~  118 (148)
                                            +.                     + ..++.++. |++.+|+.+    ++|+.|+|||+
T Consensus       736 l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~----~~Ts~pgVFAa  811 (1012)
T TIGR03315       736 LTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQAT----GETNITNVFVI  811 (1012)
T ss_pred             EEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCC----CccCCCCEEEE
Confidence                                  00                     0 01344453 788899865    89999999999


Q ss_pred             cccCccccchhHHHHHHHHHHHHHHHHh
Q psy5231         119 WRCTRLYFIDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus       119 GD~~~~~~~~~~~~A~~~G~~aA~~i~~  146 (148)
                      |||+..+  ..+..|+++|+.||.+|..
T Consensus       812 GD~a~GP--~tVv~AIaqGr~AA~nIl~  837 (1012)
T TIGR03315       812 GDANRGP--ATIVEAIADGRKAANAILS  837 (1012)
T ss_pred             eCcCCCc--cHHHHHHHHHHHHHHHHhc
Confidence            9998766  6899999999999999974

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.62  E-value=1.1e-14  Score=119.69  Aligned_cols=125  Identities=26%  Similarity=0.338  Sum_probs=92.6

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--   84 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--   84 (148)
                      .++++    +|+|||.+++++|..+.+++ .+|+++.|.+.  +.......+.+.    +.||++++++.+.++..+.  
T Consensus       266 ~gk~v----~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~~~a~----~~GVki~~~~~~~~i~~~~~~  337 (564)
T PRK12771        266 LGKRV----VVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEEAL----REGVEINWLRTPVEIEGDENG  337 (564)
T ss_pred             CCCCE----EEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHHHHHH----HcCCEEEecCCcEEEEcCCCC
Confidence            46666    99999999999999988888 78999998653  333333333333    4799999887776664321  


Q ss_pred             ----------------------------e------------------ee--cceeecCCeEEecCCCCcccccCCCCCeE
Q psy5231          85 ----------------------------T------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVF  116 (148)
Q Consensus        85 ----------------------------~------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vy  116 (148)
                                                  .                  +.  .++..+.|+|.+|+.+    ++|+.|+||
T Consensus       338 ~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~----~~ts~~~Vf  413 (564)
T PRK12771        338 ATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNF----MMTGRPGVF  413 (564)
T ss_pred             EEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCC----ccCCCCCEE
Confidence                                        0                  00  1122124778888854    899999999


Q ss_pred             EecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         117 CRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       117 a~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ++||++..+  +.+..|+++|+.||.+|+++|
T Consensus       414 a~GD~~~g~--~~v~~Av~~G~~aA~~i~~~L  443 (564)
T PRK12771        414 AGGDMVPGP--RTVTTAIGHGKKAARNIDAFL  443 (564)
T ss_pred             eccCcCCCc--hHHHHHHHHHHHHHHHHHHHH
Confidence            999998766  689999999999999999886

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.61  E-value=1.1e-14  Score=117.83  Aligned_cols=47  Identities=36%  Similarity=0.453  Sum_probs=40.6

Q ss_pred             CeEEe-cCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231          95 GYIKT-KLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus        95 g~i~v-d~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      |.+.+ |+.     ++|+.|+|||+|||+..+  .++..|+++|+.||.+|++||
T Consensus       431 G~i~~~~~~-----~~Ts~~gVfAaGD~~~g~--~~~~~Av~~G~~AA~~i~~~L  478 (485)
T TIGR01317       431 GNISAGYDD-----YSTSIPGVFAAGDCRRGQ--SLIVWAINEGRKAAAAVDRYL  478 (485)
T ss_pred             CCEEecCCC-----ceECCCCEEEeeccCCCc--HHHHHHHHHHHHHHHHHHHHH
Confidence            66644 445     999999999999998766  688999999999999999986

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG4716|consensus

Probab=99.61  E-value=1.7e-15  Score=115.42  Aligned_cols=121  Identities=21%  Similarity=0.227  Sum_probs=96.9

Q ss_pred             EEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe------------
Q psy5231          19 DVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------------   85 (148)
Q Consensus        19 ~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------------   85 (148)
                      +|||+|.+|+|||.+|+.+|.+||++.|+--+++ +.++.+.+.+.|++.||+|...+.+.+++..+.            
T Consensus       202 LvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t  281 (503)
T KOG4716|consen  202 LVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNT  281 (503)
T ss_pred             EEEccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccc
Confidence            6999999999999999999999999999877766 678889999999999999987765555542111            


Q ss_pred             -------------------------e-ecceeec--CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231          86 -------------------------V-TGQLEMN--DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG  137 (148)
Q Consensus        86 -------------------------~-~~~~~~~--~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G  137 (148)
                                               + ..++..+  .+.|.+|+.     .+|++|+|||+||+.... +.....|+..|
T Consensus       282 ~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~-----e~t~vp~vyAvGDIl~~k-pELTPvAIqsG  355 (503)
T KOG4716|consen  282 GEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDE-----EATNVPYVYAVGDILEDK-PELTPVAIQSG  355 (503)
T ss_pred             cccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChH-----HhcCCCceEEecceecCC-cccchhhhhhc
Confidence                                     1 1144554  367778877     899999999999997654 36788999999


Q ss_pred             HHHHHHHH
Q psy5231         138 CMAALDAQ  145 (148)
Q Consensus       138 ~~aA~~i~  145 (148)
                      +.-|..+.
T Consensus       356 rlLa~Rlf  363 (503)
T KOG4716|consen  356 RLLARRLF  363 (503)
T ss_pred             hHHHHHHh
Confidence            99988764

>KOG2495|consensus

Probab=99.57  E-value=1.3e-14  Score=113.16  Aligned_cols=127  Identities=21%  Similarity=0.278  Sum_probs=95.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--------------CCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--------------AKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--------------g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      +++|||||++|+|+|.+|+.+              -.+|||++-.+.+..  +..+.+...+++.+.+|++.+++.|+++
T Consensus       220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V  299 (491)
T KOG2495|consen  220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKV  299 (491)
T ss_pred             EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEee
Confidence            569999999999999999854              237999998776543  4567777888888999999999999887


Q ss_pred             ecCCe----------------e--ec---------c--eeecC-C--eEEecCCCCcccccCCCCCeEEecccCccccc-
Q psy5231          81 IGNNT----------------V--TG---------Q--LEMND-G--YIKTKLNKKTGYTSTNISGVFCRWRCTRLYFI-  127 (148)
Q Consensus        81 ~~~~~----------------~--~~---------~--~~~~~-g--~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~-  127 (148)
                      +++..                +  ..         .  -..+. +  .+.+|+++    ....++||||+|||+..+++ 
T Consensus       300 ~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~L----rV~G~~nvfAiGDca~~~~~~  375 (491)
T KOG2495|consen  300 TEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWL----RVKGVKNVFAIGDCADQRGLK  375 (491)
T ss_pred             cCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeecee----eccCcCceEEeccccccccCc
Confidence            75432                0  00         0  01222 3  78999994    44689999999999955433 


Q ss_pred             hhHHHHHHHHHHHHHHHHhh
Q psy5231         128 DKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       128 ~~~~~A~~~G~~aA~~i~~~  147 (148)
                      ++...|..||.-.|.+..+.
T Consensus       376 ~tAQVA~QqG~yLAk~fn~m  395 (491)
T KOG2495|consen  376 PTAQVAEQQGAYLAKNFNKM  395 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHH
Confidence            37778999999999988653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.56  E-value=4.6e-14  Score=87.63  Aligned_cols=68  Identities=26%  Similarity=0.349  Sum_probs=61.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      +++|||||++|+|+|..|++.|++||++++.+.+.  .++...+.+++.|++.||++++++.+.++..++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~   70 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDG   70 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEET
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC
Confidence            46999999999999999999999999999998875  367788888888889999999999999998654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.46  E-value=1.6e-12  Score=101.91  Aligned_cols=125  Identities=20%  Similarity=0.236  Sum_probs=97.7

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch---HHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE---KILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--------   84 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~---~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--------   84 (148)
                      ++++|+|+|++|+++|..+++.|++|++++..+++...   +...+.+.+.|+..||++++++.+.++....        
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~  216 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERV  216 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEE
Confidence            45599999999999999999999999999998887553   6778888888889999999999988887531        


Q ss_pred             e-----------------------ee-cc---eeecCCeEEecCCCCcccccCC-CCCeEEecccCcccc--------ch
Q psy5231          85 T-----------------------VT-GQ---LEMNDGYIKTKLNKKTGYTSTN-ISGVFCRWRCTRLYF--------ID  128 (148)
Q Consensus        85 ~-----------------------~~-~~---~~~~~g~i~vd~~~~~~~~~t~-~~~vya~GD~~~~~~--------~~  128 (148)
                      .                       +. +.   .....|++.+|+.     ++|+ .++||++|||+..+.        ..
T Consensus       217 ~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~-----~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~  291 (415)
T COG0446         217 VGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDER-----GGTSKDPDVYAAGDVAEIPAAETGKGGRIA  291 (415)
T ss_pred             EEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccc-----cccCCCCCEEeccceEeeecccCCceeeee
Confidence            1                       01 11   2223478999999     8887 999999999876531        22


Q ss_pred             hHHHHHHHHHHHHHHHH
Q psy5231         129 KQLLALGSGCMAALDAQ  145 (148)
Q Consensus       129 ~~~~A~~~G~~aA~~i~  145 (148)
                      .+..+...+..++.++.
T Consensus       292 ~~~~a~~~~~i~~~~~~  308 (415)
T COG0446         292 LWAIAVAAGRIAAENIA  308 (415)
T ss_pred             chhhHhhhhHHHHHHhc
Confidence            44567788888888775

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.42  E-value=3.2e-12  Score=110.99  Aligned_cols=126  Identities=19%  Similarity=0.177  Sum_probs=86.0

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe---
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT---   85 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~---   85 (148)
                      .|+++    +|||+|++|+|+|..|+++| ..|+++++.+.+  .+.    +.+.|++.||++++++.+.++.+++.   
T Consensus       316 ~gk~V----vViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--~~~----l~~~L~~~GV~i~~~~~v~~i~g~~~v~~  385 (985)
T TIGR01372       316 PGKRI----VVATNNDSAYRAAADLLAAGIAVVAIIDARADV--SPE----ARAEARELGIEVLTGHVVAATEGGKRVSG  385 (985)
T ss_pred             CCCeE----EEECCCHHHHHHHHHHHHcCCceEEEEccCcch--hHH----HHHHHHHcCCEEEcCCeEEEEecCCcEEE
Confidence            57777    99999999999999999999 467888876544  222    33445578999999999988865431   


Q ss_pred             --ee----c--ceeec------------------CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231          86 --VT----G--QLEMN------------------DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM  139 (148)
Q Consensus        86 --~~----~--~~~~~------------------~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~  139 (148)
                        +.    .  .++.|                  ...+..|+....+.-.|++|+||++||+++..   ++..|+.+|+.
T Consensus       386 V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~~t~v~gVyaaGD~~g~~---~~~~A~~eG~~  462 (985)
T TIGR01372       386 VAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLPGDAVQGCILAGAANGLF---GLAAALADGAA  462 (985)
T ss_pred             EEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceecCCCCCCeEEeeccCCcc---CHHHHHHHHHH
Confidence              11    0  01111                  01122222200001247899999999998654   78889999999


Q ss_pred             HHHHHHhhC
Q psy5231         140 AALDAQRYL  148 (148)
Q Consensus       140 aA~~i~~~l  148 (148)
                      ||.+|...|
T Consensus       463 Aa~~i~~~l  471 (985)
T TIGR01372       463 AGAAAARAA  471 (985)
T ss_pred             HHHHHHHHc
Confidence            999997654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.42  E-value=6.5e-13  Score=109.50  Aligned_cols=121  Identities=20%  Similarity=0.196  Sum_probs=94.6

Q ss_pred             EEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe----------
Q psy5231          19 DVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT----------   85 (148)
Q Consensus        19 ~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~----------   85 (148)
                      +|||||.-|+|+|..|...|.+|++++..+.+-   .++.-...|+..|++.|++++++...+++.++..          
T Consensus       149 vVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~  228 (793)
T COG1251         149 VVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGT  228 (793)
T ss_pred             EEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCC
Confidence            899999999999999999999999999987652   2444555677777789999999887777664332          


Q ss_pred             --------e------------ecceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc--chhHHHHHHHHHHHHHH
Q psy5231          86 --------V------------TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--IDKQLLALGSGCMAALD  143 (148)
Q Consensus        86 --------~------------~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--~~~~~~A~~~G~~aA~~  143 (148)
                              +            ..++.+++ .|.+|.+     ++||.|+|||+|+|+...+  +..+..+..+++.+|.+
T Consensus       229 ~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~-----mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~h  302 (793)
T COG1251         229 EIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDY-----MQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADH  302 (793)
T ss_pred             cccceeEEEecccccccHhHHhcCcCcCC-Ceeeccc-----ccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHH
Confidence                    1            12445555 5788888     9999999999999986542  45677888999999887


Q ss_pred             HH
Q psy5231         144 AQ  145 (148)
Q Consensus       144 i~  145 (148)
                      +.
T Consensus       303 l~  304 (793)
T COG1251         303 LC  304 (793)
T ss_pred             hc
Confidence            74

>KOG0399|consensus

Probab=99.39  E-value=7.7e-13  Score=112.82  Aligned_cols=71  Identities=21%  Similarity=0.349  Sum_probs=56.5

Q ss_pred             hhhhhhhc-------CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHH
Q psy5231           3 YEFGILAL-------IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKV   64 (148)
Q Consensus         3 ~~~g~~~~-------gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l   64 (148)
                      |+.||+..       |++|    +|||+|+.|+.+|..|.+.|+.||+++|.++..+           +...+++--+.|
T Consensus      1770 f~egwm~p~pp~~rtg~~v----aiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll 1845 (2142)
T KOG0399|consen 1770 FEEGWMKPCPPAFRTGKRV----AIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLL 1845 (2142)
T ss_pred             HHhcCCccCCcccccCcEE----EEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHH
Confidence            56777643       6666    9999999999999999999999999999987643           334555544556


Q ss_pred             hcCCcEEEcCceE
Q psy5231          65 NEGKIDIKLKHIV   77 (148)
Q Consensus        65 ~~~~v~i~~~~~v   77 (148)
                      ...||+|++++.+
T Consensus      1846 ~~egi~f~tn~ei 1858 (2142)
T KOG0399|consen 1846 EQEGIRFVTNTEI 1858 (2142)
T ss_pred             HhhCceEEeeccc
Confidence            6899999998876

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.31  E-value=3e-11  Score=97.72  Aligned_cols=48  Identities=10%  Similarity=-0.028  Sum_probs=40.7

Q ss_pred             CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231          95 GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus        95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      |++.+|+.     ++|++|||||+|||..++ ...+..+..+|..+|.+|.+++
T Consensus       374 G~V~~d~~-----~~T~ipGvyAaGDi~~Gp-~gvI~t~~~dA~~ta~~i~~d~  421 (491)
T PLN02852        374 GRVLSSAS-----GADTEPGLYVVGWLKRGP-TGIIGTNLTCAEETVASIAEDL  421 (491)
T ss_pred             ceEEeCCC-----CccCCCCEEEeeeEecCC-CCeeeecHhhHHHHHHHHHHHH
Confidence            66666665     789999999999999877 4578899999999999998764

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.26  E-value=1.2e-11  Score=88.50  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+.+|..|++.+.+|+++++.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            46999999999999999999999999997654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.19  E-value=7.4e-11  Score=94.70  Aligned_cols=127  Identities=26%  Similarity=0.235  Sum_probs=82.7

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCC---CCchHH-HHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEK---LRCEKI-LIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~---~~~~~~-~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      .||+|    +|||||++++|++....+.|. +|+.+.+...   ....+. ......+....+|+...+.....++.++.
T Consensus       261 ~gk~v----vVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e  336 (457)
T COG0493         261 KGKRV----VVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNE  336 (457)
T ss_pred             CCCeE----EEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecC
Confidence            34666    999999999999988888876 7887753211   111111 11111122224566655544444443211


Q ss_pred             e---------------------------------------------e----ec------ceeecC-CeEEecCCCCcccc
Q psy5231          85 T---------------------------------------------V----TG------QLEMND-GYIKTKLNKKTGYT  108 (148)
Q Consensus        85 ~---------------------------------------------~----~~------~~~~~~-g~i~vd~~~~~~~~  108 (148)
                      .                                             +    ..      .+..+. |.+.+++.     .
T Consensus       337 ~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~-----~  411 (457)
T COG0493         337 GGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDEN-----L  411 (457)
T ss_pred             CCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccc-----c
Confidence            0                                             0    01      133343 77888887     5


Q ss_pred             -cCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231         109 -STNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       109 -~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                       +|+.|++|+.||+..+.  ..+..|+.+|+.||..|+.+
T Consensus       412 ~~ts~~~vfa~gD~~~g~--~~vv~ai~eGr~aak~i~~~  449 (457)
T COG0493         412 QQTSIPGVFAGGDAVRGA--ALVVWAIAEGREAAKAIDKE  449 (457)
T ss_pred             ccccCCCeeeCceeccch--hhhhhHHhhchHHHHhhhHH
Confidence             99999999999999865  68999999999999999843

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.01  E-value=3.2e-09  Score=84.72  Aligned_cols=127  Identities=13%  Similarity=-0.008  Sum_probs=88.1

Q ss_pred             EEEcCchHHHHHH-HHHh----hcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--------
Q psy5231          19 DVIGGGNTAVEEA-LYLS----NIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--------   85 (148)
Q Consensus        19 ~ViGgG~~g~e~A-~~l~----~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--------   85 (148)
                      +|++.+.+|+|.+ ..++    +.|.+|+++++.+.......+.+.+.+.|++.|+++++++++.++..++.        
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~  298 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTR  298 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEee
Confidence            6899999999999 6665    46999999988776554456777788888889999999999887652110        


Q ss_pred             ------------------e-ecce--------------e--------------------ecCCeEEecCCCCc--ccccC
Q psy5231          86 ------------------V-TGQL--------------E--------------------MNDGYIKTKLNKKT--GYTST  110 (148)
Q Consensus        86 ------------------~-~~~~--------------~--------------------~~~g~i~vd~~~~~--~~~~t  110 (148)
                                        + ..++              +                    +..-.+.+|+.+.+  ...++
T Consensus       299 ~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~g~~  378 (422)
T PRK05329        299 NHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQGGP  378 (422)
T ss_pred             CCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCCCCe
Confidence                              0 0000              0                    00112345544322  13677


Q ss_pred             CCCCeEEecccCccccchhH------HHHHHHHHHHHHHHHhh
Q psy5231         111 NISGVFCRWRCTRLYFIDKQ------LLALGSGCMAALDAQRY  147 (148)
Q Consensus       111 ~~~~vya~GD~~~~~~~~~~------~~A~~~G~~aA~~i~~~  147 (148)
                      ..+||||+|++.++.  ..+      ..|+..|..||.+|.+.
T Consensus       379 ~~~nl~a~G~vl~g~--d~~~~~~g~Gva~~ta~~a~~~~~~~  419 (422)
T PRK05329        379 VIENLYAAGAVLGGY--DPIREGCGSGVALATALHAAEQIAEE  419 (422)
T ss_pred             eccceEEeeehhcCC--chHHhCCCchhHHHHHHHHHHHHHHh
Confidence            899999999998775  223      58899999999988653

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.92  E-value=1.5e-08  Score=80.85  Aligned_cols=67  Identities=22%  Similarity=0.285  Sum_probs=51.6

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchH------------------HHHHHHHhHHhcCCcEEEcCc
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEK------------------ILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~------------------~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      +.++++|||||.+|+++|+.|++.|.+|+|+|+.+.+.+.-                  ....++..   +.+|++++.+
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~---hp~i~l~Tya  199 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSN---HPNIELITYA  199 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhcc---CCceeeeeee
Confidence            44566999999999999999999999999999987765421                  11122222   6799999999


Q ss_pred             eEEEEecC
Q psy5231          76 IVHKIIGN   83 (148)
Q Consensus        76 ~v~~i~~~   83 (148)
                      .|+++.+.
T Consensus       200 eV~ev~G~  207 (622)
T COG1148         200 EVEEVSGS  207 (622)
T ss_pred             eeeeeccc
Confidence            99987653

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.73  E-value=2e-07  Score=73.47  Aligned_cols=39  Identities=26%  Similarity=0.247  Sum_probs=31.8

Q ss_pred             cccCC-CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         107 YTSTN-ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       107 ~~~t~-~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +++|. +||+|++|+.++..   -...|+++|.+|+.|+.+++
T Consensus       349 ~l~~k~~~~lf~AGqi~G~~---Gy~eaaa~G~~ag~na~~~~  388 (392)
T PF01134_consen  349 TLETKKIPGLFFAGQINGTE---GYEEAAAQGLIAGINAARRL  388 (392)
T ss_dssp             TSBBSSSBTEEE-GGGGTB----SHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEECCCCCceECCCCcchh---HHHHHHHHHHHHHHHHHHHH
Confidence            37776 99999999998876   46889999999999998863

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>KOG1346|consensus

Probab=98.53  E-value=7.4e-08  Score=75.98  Aligned_cols=124  Identities=16%  Similarity=0.204  Sum_probs=80.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhc----CCeEEEE-EeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe---
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNI----AKKVTLI-HRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT---   85 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv-~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~---   85 (148)
                      ++|.|||+|..|.|+|..|.+.    |.+|+-+ +..-.+.  ..+.+.+.-.+++++.||.+..+..|.++.....   
T Consensus       348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~  427 (659)
T KOG1346|consen  348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLV  427 (659)
T ss_pred             ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceE
Confidence            3459999999999999999864    6688844 3321111  1234555556666689999998887766543211   


Q ss_pred             -------------------------e--ecceeecC--CeEEecCCCCcccccCCCCCeEEecccCcccc-------chh
Q psy5231          86 -------------------------V--TGQLEMND--GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF-------IDK  129 (148)
Q Consensus        86 -------------------------~--~~~~~~~~--g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~-------~~~  129 (148)
                                               +  ..++++|.  |.+.+|..     ++ -..|||++||++...+       ...
T Consensus       428 lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnae-----L~-ar~NvwvAGdaacF~D~~LGrRRVeh  501 (659)
T KOG1346|consen  428 LKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAE-----LK-ARENVWVAGDAACFEDGVLGRRRVEH  501 (659)
T ss_pred             EEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeehe-----ee-cccceeeecchhhhhcccccceeccc
Confidence                                     1  12556663  66677766     44 4579999999976431       123


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy5231         130 QLLALGSGCMAALDAQ  145 (148)
Q Consensus       130 ~~~A~~~G~~aA~~i~  145 (148)
                      .-.|+-+|+.|+.|+.
T Consensus       502 hdhavvSGRLAGENMt  517 (659)
T KOG1346|consen  502 HDHAVVSGRLAGENMT  517 (659)
T ss_pred             cccceeeceecccccc
Confidence            4567778888887763

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.49  E-value=1.2e-06  Score=75.83  Aligned_cols=31  Identities=19%  Similarity=0.095  Sum_probs=22.8

Q ss_pred             EecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         117 CRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       117 a~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ..||+-..- -..+..|+++|+.++.+|.+||
T Consensus       739 ~~~d~~~~f-~Gtvv~A~as~k~~~~~i~~~l  769 (1028)
T PRK06567        739 YFGDCNPKY-SGSVVKALASSKEGYDAINKKL  769 (1028)
T ss_pred             cccCCCCcc-ccHHHHHHHHHHhHHHHHHHHH
Confidence            355553221 2478999999999999999876

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.48  E-value=1.1e-06  Score=66.18  Aligned_cols=66  Identities=18%  Similarity=0.190  Sum_probs=52.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC------------CCc------hHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK------------LRC------EKILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~------------~~~------~~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      +|+|||||++|+++|..|++.|.+|+|+++.+.            ++.      ..++.+.+.+.+++.++++++ +.+.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            469999999999999999999999999997541            111      135566777777788999998 7888


Q ss_pred             EEecC
Q psy5231          79 KIIGN   83 (148)
Q Consensus        79 ~i~~~   83 (148)
                      ++..+
T Consensus        81 ~v~~~   85 (300)
T TIGR01292        81 KVDLS   85 (300)
T ss_pred             EEEec
Confidence            87654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.39  E-value=1.1e-06  Score=76.43  Aligned_cols=65  Identities=23%  Similarity=0.278  Sum_probs=51.8

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      ..||+|    +|||+|++|+.+|..|++.|++||++++.+.+.+           ..++.++..+.++..|+++++++.+
T Consensus       304 ~~gkkV----aVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v  379 (944)
T PRK12779        304 AVKPPI----AVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVV  379 (944)
T ss_pred             CCCCeE----EEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEe
Confidence            346666    9999999999999999999999999999765432           2345555556677899999988765

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.30  E-value=4.2e-06  Score=66.71  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=25.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..+++.|.+|+|+|+.++
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~   34 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR   34 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence            459999999999999999999999999999653

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.30  E-value=3.8e-06  Score=68.01  Aligned_cols=62  Identities=21%  Similarity=0.273  Sum_probs=49.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      +|+|||+|++|+.+|..|++.|.+|+++++.+.+.           ...+..++..+.+++.|++++.++.+.
T Consensus       143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~  215 (467)
T TIGR01318       143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG  215 (467)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeC
Confidence            34999999999999999999999999999876542           123444555556668899999998773

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.27  E-value=4.6e-06  Score=67.26  Aligned_cols=63  Identities=22%  Similarity=0.266  Sum_probs=50.1

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      +++|+|||||+.|+++|..|++.|.+|+++++.+.+.           ...++.....+.+++.|+++++++.+
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  213 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEV  213 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            3455999999999999999999999999999876542           12345556666677889999988875

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.25  E-value=3.5e-06  Score=73.91  Aligned_cols=61  Identities=18%  Similarity=0.257  Sum_probs=49.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      +|+|||||++|+.+|..|++.|.+|+++++.+.+.+           ..++.++..+.|++.||++++++.+
T Consensus       432 kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~v  503 (1006)
T PRK12775        432 KVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVI  503 (1006)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCcc
Confidence            449999999999999999999999999998765422           2355666666777899999988654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.25  E-value=4.4e-06  Score=67.31  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=48.1

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      ++|+|||+|+.|+.+|..|++.|++|+++++.+.+.           ...+..+...+.+++.|+++++++.+
T Consensus       134 ~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  206 (449)
T TIGR01316       134 KKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV  206 (449)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence            345999999999999999999999999999865431           12344455555666789999988755

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.25  E-value=5.6e-06  Score=67.08  Aligned_cols=63  Identities=25%  Similarity=0.360  Sum_probs=48.7

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      ++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.+           ..+......+.+++.|+++++++.+.
T Consensus       144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  217 (471)
T PRK12810        144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVG  217 (471)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence            3449999999999999999999999999998765421           22344444455667899999988763

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.23  E-value=4.5e-06  Score=70.06  Aligned_cols=62  Identities=19%  Similarity=0.254  Sum_probs=48.4

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      ++|+|||+|++|+.+|..|++.|++|+++++.+.+.           .+....+...+.++..|+++++++.+
T Consensus       311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v  383 (639)
T PRK12809        311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI  383 (639)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc
Confidence            334999999999999999999999999999977542           12334444445566789999998876

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.23  E-value=3.5e-06  Score=67.97  Aligned_cols=67  Identities=24%  Similarity=0.233  Sum_probs=54.1

Q ss_pred             CcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        12 k~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      +...++|+|||+|+.|+.+|..|++.|++||++++.++..+           ..+..++..+.|++.|++|+.++++-
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG  197 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG  197 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence            34445559999999999999999999999999999766432           23566677777888999999998773

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.23  E-value=6.6e-06  Score=66.95  Aligned_cols=62  Identities=21%  Similarity=0.342  Sum_probs=48.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      +++|||+|++|+.+|..|++.|.+|+++++.+.+.           .......+..+.+++.||++++++.+.
T Consensus       145 ~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~  217 (485)
T TIGR01317       145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIG  217 (485)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeC
Confidence            44999999999999999999999999999876532           123445455556678899999998774

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12831 putative oxidoreductase; Provisional

Probab=98.21  E-value=5.9e-06  Score=66.87  Aligned_cols=62  Identities=16%  Similarity=0.238  Sum_probs=48.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc------------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC------------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      ++|+|||||+.|+.+|..|++.|++|+++++.+.+.+            .+.+..+..+.+++.|+++++++.+
T Consensus       141 ~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v  214 (464)
T PRK12831        141 KKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVV  214 (464)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEE
Confidence            3449999999999999999999999999998654311            1224455556677889999998866

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.21  E-value=1e-05  Score=63.64  Aligned_cols=68  Identities=21%  Similarity=0.367  Sum_probs=55.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--------------------------------------------
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--------------------------------------------   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------------------------------------------   52 (148)
                      +|+|||||++|+-+|..+++.|++|+|+++.+++..                                            
T Consensus         5 dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d~   84 (408)
T COG2081           5 DVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPEDF   84 (408)
T ss_pred             eEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHHH
Confidence            459999999999999999999999999998543200                                            


Q ss_pred             -------------------------hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          53 -------------------------EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        53 -------------------------~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                                               ...+++.+...+++.||+++++++|.++..++
T Consensus        85 i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~  141 (408)
T COG2081          85 IDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD  141 (408)
T ss_pred             HHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC
Confidence                                     01455667777888999999999999988663

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.21  E-value=7e-06  Score=69.08  Aligned_cols=62  Identities=23%  Similarity=0.253  Sum_probs=48.3

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      ++|+|||+|++|+.+|..|++.|.+|+++++.+.+.+           ..+...+..+.+++.|+++++++.+
T Consensus       328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v  400 (654)
T PRK12769        328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEV  400 (654)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEe
Confidence            3449999999999999999999999999998765421           2344444455566789999998876

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.17  E-value=8.5e-06  Score=71.07  Aligned_cols=64  Identities=23%  Similarity=0.304  Sum_probs=49.0

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      .+|+|    +|||||++|+.+|..|++.|.+|+|+++.+.+.+           ..+...+-.+.+++.||++++++.+
T Consensus       538 tgKkV----aIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V  612 (1019)
T PRK09853        538 SRKKV----AVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP  612 (1019)
T ss_pred             CCCcE----EEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee
Confidence            35555    9999999999999999999999999998765422           1233333344556789999999877

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.15  E-value=8.3e-06  Score=65.30  Aligned_cols=68  Identities=21%  Similarity=0.309  Sum_probs=49.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCC-----------c--h--HHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLR-----------C--E--KILIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~-----------~--~--~~~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      +|+|||||+.|+.+|..|++.+  .+|+||++.+.+.           .  .  .+...+..+.+++.|++++.++.+.+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~   81 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK   81 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence            4599999999999999999875  4899999876531           0  0  11222233455578999998989988


Q ss_pred             EecCC
Q psy5231          80 IIGNN   84 (148)
Q Consensus        80 i~~~~   84 (148)
                      +..+.
T Consensus        82 id~~~   86 (444)
T PRK09564         82 VDAKN   86 (444)
T ss_pred             EECCC
Confidence            86543

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.15  E-value=2.1e-05  Score=58.99  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=29.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+++++..
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~   33 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS   33 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            45999999999999999999999999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.15  E-value=1.7e-05  Score=65.00  Aligned_cols=68  Identities=18%  Similarity=0.274  Sum_probs=52.7

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC--CCC--------------CchHHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN--EKL--------------RCEKILIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~~--------------~~~~~~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      .+|+|||||+.|+.+|..+++.|.+|++++..  ..+              ...+.+.+.+.+++++.|+++++++++.+
T Consensus       213 ~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~  292 (515)
T TIGR03140       213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKK  292 (515)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEE
Confidence            45699999999999999999999999999641  111              11245666777777788999999999988


Q ss_pred             EecC
Q psy5231          80 IIGN   83 (148)
Q Consensus        80 i~~~   83 (148)
                      +..+
T Consensus       293 I~~~  296 (515)
T TIGR03140       293 IETE  296 (515)
T ss_pred             EEec
Confidence            8644

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.15  E-value=5.3e-06  Score=49.75  Aligned_cols=33  Identities=30%  Similarity=0.609  Sum_probs=29.6

Q ss_pred             EEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        20 ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      |||+|.+|+.+|..|++.|.+|+|+|+.+.+.+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG   33 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG   33 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence            799999999999999999999999999887654

...

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.13  E-value=1.6e-05  Score=61.99  Aligned_cols=65  Identities=14%  Similarity=0.131  Sum_probs=48.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      ++|+|||+|++|+++|..|++.|.+|+++++.+.+.+           ..+......+.+.+.|++++.++.+..+
T Consensus        19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~   94 (352)
T PRK12770         19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG   94 (352)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence            4459999999999999999999999999998765421           1122233334455679999998877543

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.13  E-value=2.1e-05  Score=64.42  Aligned_cols=67  Identities=19%  Similarity=0.236  Sum_probs=53.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC--CCC--------------CchHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN--EKL--------------RCEKILIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~~--------------~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      +|+|||||+.|+.+|..+++.|.+|+++++.  ...              .....+.+.+.+++++.|+++++++++.++
T Consensus       213 dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I  292 (517)
T PRK15317        213 DVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKL  292 (517)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence            5599999999999999999999999999752  000              012456677777777889999999999888


Q ss_pred             ecC
Q psy5231          81 IGN   83 (148)
Q Consensus        81 ~~~   83 (148)
                      ..+
T Consensus       293 ~~~  295 (517)
T PRK15317        293 EPA  295 (517)
T ss_pred             Eec
Confidence            654

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.12  E-value=2.3e-05  Score=58.83  Aligned_cols=64  Identities=19%  Similarity=0.265  Sum_probs=48.5

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc----------------------------------------hHHHH
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC----------------------------------------EKILI   57 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------------------------~~~~~   57 (148)
                      |+|||||++|+-+|..|++.|.+|+++++...+.+                                        ...+.
T Consensus        28 VvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~l~  107 (257)
T PRK04176         28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVEAA  107 (257)
T ss_pred             EEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHHHH
Confidence            49999999999999999999999999998644311                                        01233


Q ss_pred             HHHHhHHhcCCcEEEcCceEEEEe
Q psy5231          58 DRLMQKVNEGKIDIKLKHIVHKII   81 (148)
Q Consensus        58 ~~l~~~l~~~~v~i~~~~~v~~i~   81 (148)
                      ..+.++.++.|+++++++.+.++.
T Consensus       108 ~~L~~~A~~~Gv~I~~~t~V~dl~  131 (257)
T PRK04176        108 AKLAAAAIDAGAKIFNGVSVEDVI  131 (257)
T ss_pred             HHHHHHHHHcCCEEEcCceeceee
Confidence            345555556899999998887764

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.12  E-value=4.3e-05  Score=61.61  Aligned_cols=47  Identities=26%  Similarity=0.116  Sum_probs=36.8

Q ss_pred             CeEEecCCCCcccccCCCCCeEEecccCccc--c-c----hhHHHHHHHHHHHHHHHHh
Q psy5231          95 GYIKTKLNKKTGYTSTNISGVFCRWRCTRLY--F-I----DKQLLALGSGCMAALDAQR  146 (148)
Q Consensus        95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~--~-~----~~~~~A~~~G~~aA~~i~~  146 (148)
                      |.|.||.+     .+|++|++||+|.|+...  + .    ..+..++--|+.||.+|..
T Consensus       342 GGI~vD~~-----GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~  395 (518)
T COG0029         342 GGIAVDAN-----GRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAG  395 (518)
T ss_pred             ccEEECCC-----CcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhc
Confidence            78999999     999999999999997542  1 1    2456677778888888864

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.11  E-value=1.5e-05  Score=68.13  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=47.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      ++|+|||||+.|+.+|..|++.|++|+++++.+.+.+           ..+..++..+.+++.||++++++.+
T Consensus       432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v  504 (752)
T PRK12778        432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIV  504 (752)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence            3449999999999999999999999999998554321           2334445455666789999998765

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.10  E-value=1.3e-05  Score=67.44  Aligned_cols=62  Identities=19%  Similarity=0.318  Sum_probs=47.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      ++|+|||+|+.|+.+|..|++.|++|+++++.+.+.           ....+.+...+.+++.|+++++++.+
T Consensus       194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v  266 (652)
T PRK12814        194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVF  266 (652)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcc
Confidence            344999999999999999999999999999876542           12334444455566789999988764

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.08  E-value=2.6e-05  Score=63.15  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|++|+-+|..|.+.|.+|+++|+.+
T Consensus        12 ~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~   43 (461)
T PLN02172         12 HVAVIGAGAAGLVAARELRREGHTVVVFEREK   43 (461)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence            34999999999999999999999999999854

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.07  E-value=3.9e-05  Score=57.51  Aligned_cols=65  Identities=22%  Similarity=0.269  Sum_probs=49.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc----------------------------------------hHHH
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC----------------------------------------EKIL   56 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------------------------~~~~   56 (148)
                      +|+|||||++|+-+|..|++.|.+|.++++...+..                                        ..++
T Consensus        23 DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~el  102 (254)
T TIGR00292        23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAEF  102 (254)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHHH
Confidence            349999999999999999999999999999654310                                        0123


Q ss_pred             HHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231          57 IDRLMQKVNEGKIDIKLKHIVHKII   81 (148)
Q Consensus        57 ~~~l~~~l~~~~v~i~~~~~v~~i~   81 (148)
                      .+.|.++..+.|++++.++.+.++.
T Consensus       103 ~~~L~~~a~e~GV~I~~~t~V~dli  127 (254)
T TIGR00292       103 ISTLASKALQAGAKIFNGTSVEDLI  127 (254)
T ss_pred             HHHHHHHHHHcCCEEECCcEEEEEE
Confidence            3445455556899999999888765

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.04  E-value=7.2e-06  Score=58.61  Aligned_cols=34  Identities=41%  Similarity=0.507  Sum_probs=29.3

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .++|+|||+|.+|+++|..|++.|++|+++.|++
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            4778999999999999999999999999999975

...

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.03  E-value=2.7e-05  Score=63.45  Aligned_cols=61  Identities=13%  Similarity=0.135  Sum_probs=44.0

Q ss_pred             eEEEEcCchHHHHHHHHHhh--cCCeEEEEEeCCCCCc--------h-H---HHHHHHHhHHhcCCcEEEcCceE
Q psy5231          17 FTDVIGGGNTAVEEALYLSN--IAKKVTLIHRNEKLRC--------E-K---ILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~~~--------~-~---~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      +|+|||+|+.|+.+|..|++  .|.+|+|+++.+.+.+        + +   .......+.++..+++++.+..+
T Consensus        28 ~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~v  102 (491)
T PLN02852         28 HVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTL  102 (491)
T ss_pred             cEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEE
Confidence            34999999999999999987  7999999999765421        1 1   12223333445678998877655

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.98  E-value=2.6e-05  Score=63.28  Aligned_cols=64  Identities=16%  Similarity=0.009  Sum_probs=47.8

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      +....++++    +|+|+|.+|+++|..|.+.|.+|+++++.+..     ....+.+.|++.|++++++..+.
T Consensus        11 ~~~~~~~~v----~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~-----~~~~~~~~l~~~gv~~~~~~~~~   74 (480)
T PRK01438         11 HSDWQGLRV----VVAGLGVSGFAAADALLELGARVTVVDDGDDE-----RHRALAAILEALGATVRLGPGPT   74 (480)
T ss_pred             ccCcCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCchh-----hhHHHHHHHHHcCCEEEECCCcc
Confidence            345567777    99999999999999999999999999876431     12223334446899999876553

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.98  E-value=2.7e-05  Score=68.12  Aligned_cols=59  Identities=20%  Similarity=0.287  Sum_probs=45.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      +|+|||||+.|+.+|..|++.|.+|||+++.+.+.+           ..+..++..+.+++.||++++++
T Consensus       539 kVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~  608 (1012)
T TIGR03315       539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGC  608 (1012)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEec
Confidence            449999999999999999999999999998755422           12344444455567899998874

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.94  E-value=5.1e-05  Score=62.84  Aligned_cols=64  Identities=27%  Similarity=0.388  Sum_probs=47.3

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      .|++|    +|||+|++|+.+|..|++.|.+|+++++.+.+.+           ..+..+.-.+.+++.|++++.++.+
T Consensus       136 ~g~~V----~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~  210 (564)
T PRK12771        136 TGKRV----AVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV  210 (564)
T ss_pred             CCCEE----EEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            45666    9999999999999999999999999998665421           1222332233445689999988776

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.93  E-value=1.4e-05  Score=63.87  Aligned_cols=31  Identities=29%  Similarity=0.297  Sum_probs=28.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||.+|+++|..|++.|.+|+|++++
T Consensus         4 dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~r   34 (436)
T PRK05335          4 PVNVIGAGLAGSEAAWQLAKRGVPVELYEMR   34 (436)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence            4599999999999999999999999999963

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.92  E-value=1.1e-05  Score=65.40  Aligned_cols=45  Identities=20%  Similarity=0.182  Sum_probs=40.1

Q ss_pred             chhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231           2 QYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus         2 ~~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+....++||+|    +|||+|.+|+|+|.+|+..+++|++++|+..+
T Consensus       195 ~yr~~~~~~gk~V----vVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~  239 (461)
T PLN02172        195 NYRVPDPFKNEVV----VVIGNFASGADISRDIAKVAKEVHIASRASES  239 (461)
T ss_pred             ccCCccccCCCEE----EEECCCcCHHHHHHHHHHhCCeEEEEEeeccc
Confidence            4677777889999    99999999999999999999999999997543

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.87  E-value=9.8e-05  Score=52.69  Aligned_cols=66  Identities=18%  Similarity=0.287  Sum_probs=44.8

Q ss_pred             EEEcCchHHHHHHHHHhhcCCe-EEEEEeCCCCCc---------------------------------------------
Q psy5231          19 DVIGGGNTAVEEALYLSNIAKK-VTLIHRNEKLRC---------------------------------------------   52 (148)
Q Consensus        19 ~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~---------------------------------------------   52 (148)
                      +|||||++|+-+|..|.+.|.+ |+++++.+.+.+                                             
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            5999999999999999999999 999998533200                                             


Q ss_pred             hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          53 EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        53 ~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      .+++.+.+....++.++++.++++|.++..++
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~  112 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDG  112 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEET
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEec
Confidence            01233555555667899999999999987654

...

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.86  E-value=2.7e-05  Score=59.59  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            4699999999999999999999999999997654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.84  E-value=0.00013  Score=53.32  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=26.6

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      |+|+|+|++|+-+|..|++.|.+|.++|++..
T Consensus        20 V~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~   51 (230)
T PF01946_consen   20 VAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS   51 (230)
T ss_dssp             EEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred             EEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence            49999999999999999999999999998643

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.83  E-value=0.00014  Score=60.25  Aligned_cols=64  Identities=14%  Similarity=0.224  Sum_probs=48.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc------------------hHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC------------------EKILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------~~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.. +.+                  ...+.+.+.+++++.|++++ ++.+.
T Consensus         6 DVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~   83 (555)
T TIGR03143         6 DLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL   83 (555)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence            45999999999999999999999999999742 211                  12445566666667899986 56777


Q ss_pred             EEec
Q psy5231          79 KIIG   82 (148)
Q Consensus        79 ~i~~   82 (148)
                      .+..
T Consensus        84 ~i~~   87 (555)
T TIGR03143        84 DVDF   87 (555)
T ss_pred             EEEe
Confidence            7654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.83  E-value=2.5e-05  Score=62.57  Aligned_cols=33  Identities=30%  Similarity=0.340  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||.+|+++|..|++.|.+|+|+++++.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            469999999999999999999999999997544

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK13984 putative oxidoreductase; Provisional

Probab=97.83  E-value=0.0001  Score=61.56  Aligned_cols=64  Identities=20%  Similarity=0.282  Sum_probs=49.0

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      .++++    +|||+|+.|+.+|..|++.|.+|+++++.+...+           ......+..+.+++.|+++++++.+
T Consensus       282 ~~~~v----~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v  356 (604)
T PRK13984        282 KNKKV----AIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRV  356 (604)
T ss_pred             CCCeE----EEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEe
Confidence            45555    9999999999999999999999999998764321           1233344445566789999999877

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.79  E-value=3.7e-05  Score=61.38  Aligned_cols=35  Identities=29%  Similarity=0.484  Sum_probs=31.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLR   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~   51 (148)
                      +|+|||||.+|+-+|..|++.|  .+|+|+|.++++.
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG   38 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence            5699999999999999999987  8999999877653

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.78  E-value=2.8e-05  Score=62.71  Aligned_cols=44  Identities=32%  Similarity=0.271  Sum_probs=40.4

Q ss_pred             chhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           2 QYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         2 ~~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|.+...+.||+|    +|||+|.+|+++|..|++.|++||++.|++.
T Consensus       166 ~~~~~~~~~GKrV----~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         166 DWPNPEDLRGKRV----LVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             cCCCccccCCCeE----EEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence            5777778999999    9999999999999999999999999999754

>KOG0029|consensus

Probab=97.76  E-value=4e-05  Score=62.64  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=33.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +|+|||+|.+|+-+|..|.+.|.+|+++|-++++++
T Consensus        17 ~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   17 KVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            459999999999999999999999999999887754

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.76  E-value=3.6e-05  Score=63.41  Aligned_cols=44  Identities=39%  Similarity=0.381  Sum_probs=37.2

Q ss_pred             chhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           2 QYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         2 ~~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|.....++||+|    +|||+|.+|+|+|.+|+..+++|++..|+..
T Consensus       174 ~yr~~~~f~gKrV----lVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~  217 (531)
T PF00743_consen  174 DYRDPEPFKGKRV----LVVGGGNSGADIAVELSRVAKKVYLSTRRGA  217 (531)
T ss_dssp             G--TGGGGTTSEE----EEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred             cCcChhhcCCCEE----EEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence            6888888999999    9999999999999999999999999988643

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.76  E-value=0.00014  Score=59.20  Aligned_cols=62  Identities=15%  Similarity=0.024  Sum_probs=42.4

Q ss_pred             ceEEEEcCchHHHHHHHHHh-hcCCeEEEEEeCCCCCc--------h----HHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLS-NIAKKVTLIHRNEKLRC--------E----KILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~-~~g~~Vtlv~~~~~~~~--------~----~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      ++|+|||+|++|+.+|..|. +.|.+|+++++.+.+.+        +    ....+.+...+...+++++.+..+
T Consensus        40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~V  114 (506)
T PTZ00188         40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHV  114 (506)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEe
Confidence            45599999999999999764 67999999999876532        1    122233333344578888755444

>PRK07233 hypothetical protein; Provisional

Probab=97.75  E-value=4.7e-05  Score=60.35  Aligned_cols=35  Identities=23%  Similarity=0.441  Sum_probs=31.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      +|+|||||.+|+-+|..|++.|++|+|+|+.+.+.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G   35 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG   35 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            35999999999999999999999999999987654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.74  E-value=0.00018  Score=57.86  Aligned_cols=31  Identities=29%  Similarity=0.279  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..+++.|++|+|+++.
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            4599999999999999999999999999973

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.72  E-value=6e-05  Score=59.69  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=31.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+-+|..|++.|.+|+++|+.+.+
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            3499999999999999999999999999997654

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=97.70  E-value=7.5e-05  Score=57.20  Aligned_cols=31  Identities=29%  Similarity=0.385  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            4699999999999999999999999999996

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK09126 hypothetical protein; Provisional

Probab=97.70  E-value=0.00012  Score=57.61  Aligned_cols=32  Identities=34%  Similarity=0.373  Sum_probs=30.0

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      |+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus         6 viIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          6 IVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             EEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            49999999999999999999999999999764

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.69  E-value=6.4e-05  Score=55.05  Aligned_cols=33  Identities=24%  Similarity=0.494  Sum_probs=30.0

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      |+|+|+|++|+-+|.+|++.|.+|.++||+-.+
T Consensus        33 ViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~   65 (262)
T COG1635          33 VIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF   65 (262)
T ss_pred             EEEECcCcchHHHHHHHHhCCceEEEEEeeccc
Confidence            499999999999999999999999999996443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.69  E-value=5.2e-05  Score=66.02  Aligned_cols=47  Identities=13%  Similarity=0.057  Sum_probs=41.3

Q ss_pred             CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231          95 GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |+|.+|..     ++|++||+||+|||+..+ ..++..++..|++|+.++.+|
T Consensus       362 GGi~vd~~-----~~T~v~GLfAaGE~a~~~-~nsl~~a~v~G~~Ag~~a~~~  408 (897)
T PRK13800        362 SGVWVDEH-----ARTTVPGLYAAGDLACVP-HNYMIGAFVFGDLAGAHAAGT  408 (897)
T ss_pred             ceEEecCC-----CcccCCCeEechhccCcc-hhhhhhHHHhHHHHHHHHHHH
Confidence            78999999     999999999999997654 468888999999999998765

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.69  E-value=0.00026  Score=62.32  Aligned_cols=67  Identities=10%  Similarity=0.114  Sum_probs=50.2

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-------------hHHHHHHHHhHHhcC-CcEEEcCceEEEEe
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-------------EKILIDRLMQKVNEG-KIDIKLKHIVHKII   81 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------~~~~~~~l~~~l~~~-~v~i~~~~~v~~i~   81 (148)
                      .+|+|||||+.|+.+|..+++.|.+|+|+++.+.+.+             ..++...+.++++.. ++.+++++++..+.
T Consensus       164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~  243 (985)
T TIGR01372       164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGYY  243 (985)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEe
Confidence            3569999999999999999999999999998654421             123334555566555 59999988887664


Q ss_pred             c
Q psy5231          82 G   82 (148)
Q Consensus        82 ~   82 (148)
                      .
T Consensus       244 ~  244 (985)
T TIGR01372       244 D  244 (985)
T ss_pred             c
Confidence            3

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.68  E-value=0.00016  Score=57.29  Aligned_cols=67  Identities=15%  Similarity=0.230  Sum_probs=46.1

Q ss_pred             EEEEcCchHHHHHHHHHhhcCC--eEEEEEeCCCCCc-----hHHHH-----H--H--HHhHHhcCCcEEEcCceEEEEe
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAK--KVTLIHRNEKLRC-----EKILI-----D--R--LMQKVNEGKIDIKLKHIVHKII   81 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~-----~~~~~-----~--~--l~~~l~~~~v~i~~~~~v~~i~   81 (148)
                      |+|||||+.|+.+|..|++.+.  +|+++++.+.+..     .....     +  .  -.+.+++.+|+++.++.+..+.
T Consensus         6 vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~id   85 (396)
T PRK09754          6 IIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTLG   85 (396)
T ss_pred             EEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEEEE
Confidence            4999999999999999999876  7999987543321     11110     0  0  0122346799999998888876


Q ss_pred             cCC
Q psy5231          82 GNN   84 (148)
Q Consensus        82 ~~~   84 (148)
                      .+.
T Consensus        86 ~~~   88 (396)
T PRK09754         86 RDT   88 (396)
T ss_pred             CCC
Confidence            543

>PRK05868 hypothetical protein; Validated

Probab=97.68  E-value=6.8e-05  Score=58.97  Aligned_cols=35  Identities=23%  Similarity=0.276  Sum_probs=31.5

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      ++|+|+|||+.|+.+|..|++.|.+|+++|+.+.+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            45699999999999999999999999999986543

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=6.7e-05  Score=60.66  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=32.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +|+|+|+|..|+.+|.+|++.|++|||+|+++.+.+
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            569999999999999999999999999999887643

>PLN02268 probable polyamine oxidase

Probab=97.67  E-value=7.9e-05  Score=59.55  Aligned_cols=36  Identities=31%  Similarity=0.414  Sum_probs=32.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +|+|||+|.+|+-+|..|.+.|.+|+|+|.++++.+
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG   37 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG   37 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence            569999999999999999999999999998877644

>PRK06847 hypothetical protein; Provisional

Probab=97.67  E-value=7.6e-05  Score=58.27  Aligned_cols=33  Identities=21%  Similarity=0.335  Sum_probs=30.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..|++.|.+|+++|+.+.
T Consensus         6 ~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            459999999999999999999999999998653

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.66  E-value=0.00017  Score=57.92  Aligned_cols=69  Identities=14%  Similarity=0.163  Sum_probs=47.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCch----HHH-------HHH-H---HhHH-hcCCcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRCE----KIL-------IDR-L---MQKV-NEGKIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~----~~~-------~~~-l---~~~l-~~~~v~i~~~~~v   77 (148)
                      ++|+|||||..|+.+|..|++.  +.+|+|+++.+.+...    +..       .+. +   .+.+ ++.|++++.+++|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            3569999999999999999876  5789999987543110    110       011 1   1222 3579999989999


Q ss_pred             EEEecCC
Q psy5231          78 HKIIGNN   84 (148)
Q Consensus        78 ~~i~~~~   84 (148)
                      .+|..+.
T Consensus        82 ~~Id~~~   88 (438)
T PRK13512         82 IAINDER   88 (438)
T ss_pred             EEEECCC
Confidence            9987654

>PRK07236 hypothetical protein; Provisional

Probab=97.65  E-value=7.8e-05  Score=58.71  Aligned_cols=33  Identities=27%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+.+|..|++.|.+|+|+|+.+.
T Consensus         8 ~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          8 RAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            459999999999999999999999999998653

>PRK06753 hypothetical protein; Provisional

Probab=97.65  E-value=7.7e-05  Score=58.25  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=30.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            469999999999999999999999999998754

>KOG3851|consensus

Probab=97.65  E-value=0.00061  Score=52.66  Aligned_cols=103  Identities=14%  Similarity=0.196  Sum_probs=64.9

Q ss_pred             EEEcCchHHHHHHHH-HhhcCC--eEEEEEe--CCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--------
Q psy5231          19 DVIGGGNTAVEEALY-LSNIAK--KVTLIHR--NEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--------   85 (148)
Q Consensus        19 ~ViGgG~~g~e~A~~-l~~~g~--~Vtlv~~--~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--------   85 (148)
                      =.-|+-.-.+-++.. +++.|.  ++.++..  -+.+-+-....+.|++..++.+|++-....+.++..++.        
T Consensus       196 KCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~  275 (446)
T KOG3851|consen  196 KCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLD  275 (446)
T ss_pred             ccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcC
Confidence            345665666655543 445553  3444433  334434445556666666689999998888888876543        


Q ss_pred             ------------e--------ec---ceee-c-CCeEEecCCCCccccc-CCCCCeEEecccCccc
Q psy5231          86 ------------V--------TG---QLEM-N-DGYIKTKLNKKTGYTS-TNISGVFCRWRCTRLY  125 (148)
Q Consensus        86 ------------~--------~~---~~~~-~-~g~i~vd~~~~~~~~~-t~~~~vya~GD~~~~~  125 (148)
                                  +        .+   .-.+ | .||+.||..+    +| +..||||++|||.+.|
T Consensus       276 kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD~~T----lQs~kypNVFgiGDc~n~P  337 (446)
T KOG3851|consen  276 KPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVDQST----LQSKKYPNVFGIGDCMNLP  337 (446)
T ss_pred             CCCceeEEeeeeeeccCCCCChhhhhcCcccCcccceecChhh----hccccCCCceeeccccCCC
Confidence                        0        00   1112 3 4999999876    54 5789999999999987

>PRK08244 hypothetical protein; Provisional

Probab=97.65  E-value=9.8e-05  Score=60.06  Aligned_cols=34  Identities=26%  Similarity=0.249  Sum_probs=30.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+..
T Consensus         4 dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          4 EVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4599999999999999999999999999997543

>PRK06184 hypothetical protein; Provisional

Probab=97.64  E-value=0.0001  Score=60.15  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=30.6

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      |+|||||++|+-+|..|++.|.+|+|+++.+.+
T Consensus         6 VlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          6 VLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            499999999999999999999999999997654

>PRK08275 putative oxidoreductase; Provisional

Probab=97.64  E-value=8.1e-05  Score=61.57  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=39.4

Q ss_pred             CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231          95 GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |.|.+|..     ++|++||+||+|||+..+ ...+..|+..|++|+.++.+|
T Consensus       357 Ggi~~d~~-----~~t~i~gl~a~Ge~~~~~-~~~~~~~~~~G~~a~~~~~~~  403 (554)
T PRK08275        357 SGVWVNEK-----AETTVPGLYAAGDMASVP-HNYMLGAFTYGWFAGENAAEY  403 (554)
T ss_pred             CcEEECCC-----CccCCCCEEECcccCCch-hHHHHHHHHHHHHHHHHHHHH
Confidence            46888988     999999999999996533 357788999999999998766

>PRK10262 thioredoxin reductase; Provisional

Probab=97.64  E-value=0.00049  Score=52.87  Aligned_cols=65  Identities=20%  Similarity=0.295  Sum_probs=43.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC---C---------Cc------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK---L---------RC------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~---------~~------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      ++|+|||||+.|+.+|..+++.|.+|+++++.+.   +         +.      .+.+.+++.+.....++++..+ .+
T Consensus         7 ~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v   85 (321)
T PRK10262          7 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-HI   85 (321)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-EE
Confidence            3459999999999999999999999999975321   0         11      1234555665555666776654 34


Q ss_pred             EEEe
Q psy5231          78 HKII   81 (148)
Q Consensus        78 ~~i~   81 (148)
                      ..+.
T Consensus        86 ~~v~   89 (321)
T PRK10262         86 NKVD   89 (321)
T ss_pred             EEEE
Confidence            4443

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.64  E-value=0.00032  Score=56.15  Aligned_cols=67  Identities=10%  Similarity=0.026  Sum_probs=47.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch-------------HHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE-------------KILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      +|+|||||..|+.+|..|.....+||||++++.+...             ......+.+.++..+++++. .+|.+|..+
T Consensus        12 ~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~Id~~   90 (424)
T PTZ00318         12 NVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDVDFE   90 (424)
T ss_pred             eEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEEEcC
Confidence            3499999999999999998777899999987654211             12223344555567888874 578787654


Q ss_pred             C
Q psy5231          84 N   84 (148)
Q Consensus        84 ~   84 (148)
                      .
T Consensus        91 ~   91 (424)
T PTZ00318         91 E   91 (424)
T ss_pred             C
Confidence            3

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.63  E-value=8.7e-05  Score=58.77  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            3559999999999999999999999999998654

>PRK07045 putative monooxygenase; Reviewed

Probab=97.63  E-value=9.1e-05  Score=58.28  Aligned_cols=34  Identities=24%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus         7 ~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          7 DVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            4599999999999999999999999999986643

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.62  E-value=9.8e-05  Score=58.12  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=30.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..|++.|.+|+++|+.+.
T Consensus         6 ~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          6 PVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            459999999999999999999999999998654

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.60  E-value=0.0001  Score=58.48  Aligned_cols=32  Identities=34%  Similarity=0.443  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus         3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            56999999999999999999999999999975

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.59  E-value=0.00011  Score=59.26  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=30.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+.+|..|++.|++|+++++.+.+
T Consensus         7 DvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~   40 (461)
T PRK05249          7 DLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV   40 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence            3599999999999999999999999999986544

>PRK06126 hypothetical protein; Provisional

Probab=97.59  E-value=0.00011  Score=60.50  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+..
T Consensus         9 ~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~   42 (545)
T PRK06126          9 PVLIVGGGPVGLALALDLGRRGVDSILVERKDGT   42 (545)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4599999999999999999999999999987543

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.58  E-value=0.00012  Score=58.87  Aligned_cols=35  Identities=26%  Similarity=0.501  Sum_probs=31.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhc----CCeEEEEEeCCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI----AKKVTLIHRNEKLR   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~~   51 (148)
                      +|+|||||.+|+-+|..|++.    |.+|+|+|+++++.
T Consensus         4 ~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G   42 (462)
T TIGR00562         4 HVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG   42 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence            459999999999999999998    99999999977653

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.57  E-value=0.00012  Score=59.65  Aligned_cols=34  Identities=29%  Similarity=0.447  Sum_probs=31.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus         5 dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~   38 (487)
T COG1233           5 DVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV   38 (487)
T ss_pred             cEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence            4599999999999999999999999999986654

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.57  E-value=0.00011  Score=57.25  Aligned_cols=32  Identities=25%  Similarity=0.216  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|.+|++.|.+|+|+++..
T Consensus         5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            35999999999999999999999999999864

>PRK07588 hypothetical protein; Provisional

Probab=97.56  E-value=0.00012  Score=57.65  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=30.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+-+|..|++.|.+|+++|+.+.+
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence            4699999999999999999999999999986543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.56  E-value=0.00013  Score=59.25  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=32.3

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      ++|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G   37 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG   37 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            356999999999999999999999999999987654

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.56  E-value=0.00012  Score=61.21  Aligned_cols=41  Identities=22%  Similarity=0.186  Sum_probs=33.2

Q ss_pred             ccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         108 TSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       108 ~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ++|++||+||+|||++.....+...+..+|++|+.++.+++
T Consensus       391 ~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~  431 (608)
T PRK06854        391 RMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYI  431 (608)
T ss_pred             cccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999753213567788899999999988763

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.55  E-value=0.00013  Score=56.99  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=29.9

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      |+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus         2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~   33 (385)
T TIGR01988         2 IVIVGGGMVGLALALALARSGLKIALIEATPA   33 (385)
T ss_pred             EEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence            59999999999999999999999999999753

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.55  E-value=0.00012  Score=57.17  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~   33 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD   33 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            46999999999999999999999999999853

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.55  E-value=0.00021  Score=56.55  Aligned_cols=32  Identities=22%  Similarity=0.204  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            45999999999999999999999999999865

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.55  E-value=0.00013  Score=57.13  Aligned_cols=32  Identities=34%  Similarity=0.470  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.| .+|+++|+.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~   33 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS   33 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            3599999999999999999999 9999999864

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08013 oxidoreductase; Provisional

Probab=97.52  E-value=0.00015  Score=57.40  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..|++.|.+|+++|+.+.
T Consensus         5 dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          5 DVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            359999999999999999999999999998654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.52  E-value=0.00015  Score=57.02  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus         9 dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          9 DIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            349999999999999999999999999998653

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.51  E-value=0.00017  Score=56.64  Aligned_cols=32  Identities=28%  Similarity=0.381  Sum_probs=29.6

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      |+|||||++|+-+|..|++.|.+|+++|+.+.
T Consensus         8 v~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07608          8 VVVVGGGLVGASLALALAQSGLRVALLAPRAP   39 (388)
T ss_pred             EEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            49999999999999999999999999998644

>KOG1399|consensus

Probab=97.50  E-value=0.00015  Score=58.56  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=31.3

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      ++|+|||+|++|+-+|..|.+.|.+|+++||.+.+
T Consensus         7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i   41 (448)
T KOG1399|consen    7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI   41 (448)
T ss_pred             CceEEECcchHHHHHHHHHHHCCCCceEEEecCCc
Confidence            44599999999999999999999999999996543

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.50  E-value=0.00018  Score=57.71  Aligned_cols=32  Identities=25%  Similarity=0.327  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+++|+.+
T Consensus         7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~~   38 (428)
T PRK10157          7 DAIIVGAGLAGSVAALVLAREGAQVLVIERGN   38 (428)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            45999999999999999999999999999864

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.50  E-value=0.00018  Score=59.37  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=48.4

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch------------------------------------------
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE------------------------------------------   53 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------   53 (148)
                      |+|+|||+|++|+-+|..|.+.|.+++++|+.+.+.+-                                          
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            56699999999999999999999999999996544210                                          


Q ss_pred             --HHHHHHHHhHHhcCCc--EEEcCceEEEEec
Q psy5231          54 --KILIDRLMQKVNEGKI--DIKLKHIVHKIIG   82 (148)
Q Consensus        54 --~~~~~~l~~~l~~~~v--~i~~~~~v~~i~~   82 (148)
                        +++.+.+++..++.++  .+.++++|.+++.
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~  114 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVER  114 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEE
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeee
Confidence              1455666666666666  4788999998874

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.50  E-value=0.00017  Score=57.31  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+-+|..|++.|.+|.++++..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~   33 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP   33 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46999999999999999999999999999853

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.50  E-value=0.00015  Score=57.10  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus         8 dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          8 DAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            45999999999999999999999999999853

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.49  E-value=0.00015  Score=59.11  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=31.2

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      |+|||||..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G   34 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG   34 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence            3899999999999999999999999999987653

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.48  E-value=0.00014  Score=57.36  Aligned_cols=31  Identities=29%  Similarity=0.426  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.
T Consensus         4 dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           4 DVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            4599999999999999999999999999996

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.48  E-value=0.00021  Score=56.72  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=30.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|++|.-+|..|++.|.+|.++|+.+.
T Consensus         5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~   37 (396)
T COG0644           5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE   37 (396)
T ss_pred             eEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence            469999999999999999999999999999644

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.001  Score=51.21  Aligned_cols=67  Identities=19%  Similarity=0.283  Sum_probs=48.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCe-EEEEEeCCC------------CCc------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKK-VTLIHRNEK------------LRC------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~------------~~~------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      +|+|||||+.|+-+|.++++.+.+ +.+++....            +++      .+++.++.+++.+..++++.. ..+
T Consensus         5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v   83 (305)
T COG0492           5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DEV   83 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EEE
Confidence            569999999999999999999988 555554210            111      245667777766678888886 667


Q ss_pred             EEEecCC
Q psy5231          78 HKIIGNN   84 (148)
Q Consensus        78 ~~i~~~~   84 (148)
                      .++....
T Consensus        84 ~~v~~~~   90 (305)
T COG0492          84 EKVELEG   90 (305)
T ss_pred             EEEeecC
Confidence            7776654

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.47  E-value=0.00018  Score=57.71  Aligned_cols=32  Identities=31%  Similarity=0.296  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+.+|..+++.|++|+|+++.+
T Consensus         5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~   36 (438)
T PRK07251          5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESK   36 (438)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence            35999999999999999999999999999864

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.46  E-value=0.00019  Score=58.15  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=30.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||+|+.|+.+|..+++.|++|+||++++++
T Consensus         5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~   38 (466)
T PRK06115          5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL   38 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCce
Confidence            4599999999999999999999999999975444

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.45  E-value=0.0002  Score=57.67  Aligned_cols=36  Identities=31%  Similarity=0.503  Sum_probs=30.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhc------CCeEEEEEeCCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNI------AKKVTLIHRNEKLR   51 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~------g~~Vtlv~~~~~~~   51 (148)
                      ++|+|||||.+|+-+|..|++.      +.+|+|+|.++++.
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G   43 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG   43 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence            4569999999999999999986      37899999987653

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.45  E-value=0.00021  Score=57.37  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=27.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+-+|..+++.|.+|.|+|+.+.+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~l   34 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFL   34 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSS
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccC
Confidence            4699999999999999999999999999997654

>PRK07538 hypothetical protein; Provisional

Probab=97.45  E-value=0.00021  Score=56.76  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||+.|+-+|..|++.|.+|+++|+.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            469999999999999999999999999998654

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.44  E-value=0.00022  Score=57.36  Aligned_cols=34  Identities=18%  Similarity=0.344  Sum_probs=31.2

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      |+|||||.+|+-+|..|.+.|.+|+|+|+.+++.
T Consensus         2 v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G   35 (453)
T TIGR02731         2 VAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG   35 (453)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            5999999999999999999999999999877654

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02576 protoporphyrinogen oxidase

Probab=97.44  E-value=0.00021  Score=58.02  Aligned_cols=34  Identities=18%  Similarity=0.343  Sum_probs=31.3

Q ss_pred             EEEEcCchHHHHHHHHHhhc-CCeEEEEEeCCCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNI-AKKVTLIHRNEKLR   51 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~~   51 (148)
                      |+|||||.+|+-+|..|.+. |.+|+|+|.++++.
T Consensus        15 v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG   49 (496)
T PLN02576         15 VAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG   49 (496)
T ss_pred             EEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            49999999999999999999 99999999987664

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.44  E-value=0.00019  Score=56.50  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus         5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            45999999999999999999999999999753

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.44  E-value=0.00022  Score=56.46  Aligned_cols=33  Identities=15%  Similarity=0.294  Sum_probs=30.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            569999999999999999999999999999763

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.44  E-value=0.00094  Score=52.52  Aligned_cols=68  Identities=15%  Similarity=0.031  Sum_probs=46.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCC---c----------h-HHHHH-HHHhHHhcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLR---C----------E-KILID-RLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~---~----------~-~~~~~-~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      +++|||||..|+.+|..|++.  ..+||++.+.+...   .          . .++.. ...+.+++.|++++.+++|.+
T Consensus         4 ~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~   83 (377)
T PRK04965          4 GIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVTD   83 (377)
T ss_pred             CEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEEE
Confidence            459999999999999999876  45799998755321   0          0 11111 122333467999999999988


Q ss_pred             EecCC
Q psy5231          80 IIGNN   84 (148)
Q Consensus        80 i~~~~   84 (148)
                      +..+.
T Consensus        84 id~~~   88 (377)
T PRK04965         84 IDAEA   88 (377)
T ss_pred             EECCC
Confidence            87643

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.43  E-value=0.00023  Score=56.40  Aligned_cols=32  Identities=34%  Similarity=0.508  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|.+|++.|.+|+|+++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            46999999999999999999999999999964

>PRK10015 oxidoreductase; Provisional

Probab=97.43  E-value=0.00024  Score=57.04  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|.++++.+
T Consensus         7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~   38 (429)
T PRK10015          7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGD   38 (429)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            45999999999999999999999999999854

>PRK07208 hypothetical protein; Provisional

Probab=97.42  E-value=0.00024  Score=57.46  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=31.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+++++.
T Consensus         6 ~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G   40 (479)
T PRK07208          6 SVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG   40 (479)
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            34999999999999999999999999999977654

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.42  E-value=0.00024  Score=55.41  Aligned_cols=32  Identities=22%  Similarity=0.244  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+++..
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            45999999999999999999999999999853

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.42  E-value=0.00023  Score=56.21  Aligned_cols=32  Identities=19%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.  |.+|+|+++..
T Consensus         4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            459999999999999999998  99999999864

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.41  E-value=0.00025  Score=56.32  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=30.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~   50 (148)
                      +|+|||||..|+-+|..|++.| .+|+|+|+.+.+
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~   36 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF   36 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence            4699999999999999999998 599999997654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.41  E-value=0.00023  Score=58.37  Aligned_cols=32  Identities=25%  Similarity=0.187  Sum_probs=29.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus         8 DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d   39 (508)
T PRK12266          8 DLLVIGGGINGAGIARDAAGRGLSVLLCEQDD   39 (508)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            45999999999999999999999999999964

>PRK06185 hypothetical protein; Provisional

Probab=97.40  E-value=0.00025  Score=56.11  Aligned_cols=32  Identities=22%  Similarity=0.397  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+++.+
T Consensus         8 dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~   39 (407)
T PRK06185          8 DCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA   39 (407)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            34999999999999999999999999999864

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.40  E-value=0.00024  Score=56.12  Aligned_cols=31  Identities=29%  Similarity=0.393  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||++|+-+|..|++.|.+|+++++.
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4699999999999999999999999999986

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.40  E-value=0.00018  Score=62.66  Aligned_cols=32  Identities=25%  Similarity=0.181  Sum_probs=29.2

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+|+|||+|+.|+.+|..|++.|++||++++.
T Consensus       384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            34499999999999999999999999999974

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.40  E-value=0.00026  Score=57.24  Aligned_cols=32  Identities=31%  Similarity=0.299  Sum_probs=29.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+-+|..|++.|.+|.|+|+..
T Consensus        41 DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         41 RVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            56999999999999999999999999999853

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.39  E-value=0.00075  Score=52.67  Aligned_cols=67  Identities=16%  Similarity=0.101  Sum_probs=46.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhc---CCeEEEEEeCCCCCch-------------HHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI---AKKVTLIHRNEKLRCE-------------KILIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~-------------~~~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      +|+|||||..|+.+|..|.+.   ..+|+||++.+.+...             .++...+.+.+++.|++++.+ .+.++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            359999999999999999643   6899999987653211             122223344555689999864 78787


Q ss_pred             ecCC
Q psy5231          81 IGNN   84 (148)
Q Consensus        81 ~~~~   84 (148)
                      ..+.
T Consensus        80 d~~~   83 (364)
T TIGR03169        80 DPDR   83 (364)
T ss_pred             eccc
Confidence            6543

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.38  E-value=0.00026  Score=58.40  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=31.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus        25 dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         25 PVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4599999999999999999999999999997654

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.37  E-value=0.00025  Score=55.78  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus         7 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          7 DIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             cEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            45999999999999999999999999999853

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.37  E-value=0.0003  Score=57.08  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=30.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+.+|..+++.|.+|+|+++.+.+
T Consensus         6 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~   39 (471)
T PRK06467          6 QVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL   39 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            4599999999999999999999999999986544

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.36  E-value=0.00029  Score=55.62  Aligned_cols=32  Identities=16%  Similarity=0.224  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+-+|..|++.|.+|+|+|+.+
T Consensus         4 dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~   35 (392)
T PRK08243          4 QVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS   35 (392)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            45999999999999999999999999999865

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.36  E-value=0.00027  Score=58.42  Aligned_cols=32  Identities=25%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus         8 DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d   39 (546)
T PRK11101          8 DVIIIGGGATGAGIARDCALRGLRCILVERHD   39 (546)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            45999999999999999999999999999854

>PRK11445 putative oxidoreductase; Provisional

Probab=97.36  E-value=0.00034  Score=54.57  Aligned_cols=32  Identities=25%  Similarity=0.255  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..|++. .+|+++++.++
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~   34 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ   34 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence            469999999999999999999 99999998764

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.36  E-value=0.00025  Score=55.71  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            4699999999999999999999999999974

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.36  E-value=0.00033  Score=56.47  Aligned_cols=33  Identities=33%  Similarity=0.439  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+.+|..|++.|.+|+++++ +.+
T Consensus         3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~   35 (461)
T TIGR01350         3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYL   35 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCC
Confidence            469999999999999999999999999998 444

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>KOG2614|consensus

Probab=97.35  E-value=0.00036  Score=55.17  Aligned_cols=36  Identities=25%  Similarity=0.347  Sum_probs=32.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +|+|+|||.+|+-+|..|.+.|.+|.++|.++.+++
T Consensus         4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~   39 (420)
T KOG2614|consen    4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG   39 (420)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence            459999999999999999999999999999777654

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.33  E-value=0.0004  Score=54.98  Aligned_cols=36  Identities=17%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +++|||||.+|+-+|..|++.|.+|+++++++.+.+
T Consensus         3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG   38 (377)
T TIGR00031         3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG   38 (377)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            459999999999999999999999999999776654

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.33  E-value=0.00035  Score=54.61  Aligned_cols=32  Identities=31%  Similarity=0.500  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|.+|++.|.+|+++++..
T Consensus         6 ~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~   37 (387)
T COG0665           6 DVVIIGGGIVGLSAAYYLAERGADVTVLEAGE   37 (387)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence            45999999999999999999999999999753

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.32  E-value=0.00031  Score=56.41  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus         5 DvvVIGgGpaGl~aA~~la~~g~~V~lie~~~   36 (441)
T PRK08010          5 QAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN   36 (441)
T ss_pred             CEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence            45999999999999999999999999999864

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.32  E-value=0.00038  Score=54.71  Aligned_cols=32  Identities=34%  Similarity=0.414  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+++.+
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~   32 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP   32 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence            35999999999999999999999999999754

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.32  E-value=0.00035  Score=56.36  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +++|||||+.|+.+|..+++.|++|.|+++..
T Consensus         6 DvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          6 DVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            45999999999999999999999999999853

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.31  E-value=0.00034  Score=57.24  Aligned_cols=32  Identities=28%  Similarity=0.227  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|.+|+++|.+|.|+|+.+
T Consensus         8 DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d   39 (502)
T PRK13369          8 DLFVIGGGINGAGIARDAAGRGLKVLLCEKDD   39 (502)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            35999999999999999999999999999974

>TIGR02730 carot_isom carotene isomerase

Probab=97.30  E-value=0.0004  Score=56.56  Aligned_cols=34  Identities=26%  Similarity=0.163  Sum_probs=31.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus         2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~   35 (493)
T TIGR02730         2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP   35 (493)
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            3599999999999999999999999999997654

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.30  E-value=0.00094  Score=57.98  Aligned_cols=68  Identities=12%  Similarity=0.027  Sum_probs=47.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhc----CCeEEEEEeCCCCCch-------------HHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI----AKKVTLIHRNEKLRCE-------------KILIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~~~~-------------~~~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      +|+|||+|+.|+.+|..|.+.    +.+||+|++.+.+...             +++.....+.+++.||+++.++.+.+
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~~   84 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAIT   84 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEEE
Confidence            349999999999999999764    4689999887654211             11111123344568999999998888


Q ss_pred             EecCC
Q psy5231          80 IIGNN   84 (148)
Q Consensus        80 i~~~~   84 (148)
                      +..+.
T Consensus        85 Id~~~   89 (847)
T PRK14989         85 INRQE   89 (847)
T ss_pred             EeCCC
Confidence            86543

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.30  E-value=0.0003  Score=55.75  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||++|+-+|..|++.|.+|+++|+.
T Consensus         6 dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          6 DVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            3499999999999999999999999999984

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.30  E-value=0.00033  Score=58.50  Aligned_cols=31  Identities=32%  Similarity=0.471  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||..|+++|..+++.|.+|.|+++.
T Consensus         6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~   36 (618)
T PRK05192          6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHN   36 (618)
T ss_pred             eEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence            4599999999999999999999999999986

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.30  E-value=0.00042  Score=56.18  Aligned_cols=31  Identities=23%  Similarity=0.352  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|||||+.|+.+|..+++.|++|+|+++.
T Consensus         6 dvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            4599999999999999999999999999984

>PRK06116 glutathione reductase; Validated

Probab=97.28  E-value=0.00038  Score=55.99  Aligned_cols=31  Identities=32%  Similarity=0.342  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|||||+.|+.+|..+++.|.+|+||++.
T Consensus         6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3599999999999999999999999999974

>PRK06834 hypothetical protein; Provisional

Probab=97.27  E-value=0.00041  Score=56.59  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus         5 dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~   36 (488)
T PRK06834          5 AVVIAGGGPTGLMLAGELALAGVDVAIVERRP   36 (488)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            45999999999999999999999999999854

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.27  E-value=0.00044  Score=55.71  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=31.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~   50 (148)
                      +++|||||.+|+-+|.+|.+.+  .+++|+|.++++
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~   37 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence            5699999999999999999999  899999997665

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.25  E-value=0.00042  Score=58.28  Aligned_cols=32  Identities=31%  Similarity=0.404  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|+..|.+|+|+|+.+
T Consensus        73 DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d  104 (627)
T PLN02464         73 DVLVVGGGATGAGVALDAATRGLRVGLVERED  104 (627)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence            46999999999999999999999999999964

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.25  E-value=0.00045  Score=54.45  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|  .+|+|+|+.+
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~   36 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP   36 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence            4699999999999999999985  9999999854

>PRK06370 mercuric reductase; Validated

Probab=97.24  E-value=0.00048  Score=55.68  Aligned_cols=31  Identities=32%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|+.|+.+|..+++.|++|+|+++.
T Consensus         7 DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   37 (463)
T PRK06370          7 DAIVIGAGQAGPPLAARAAGLGMKVALIERG   37 (463)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4599999999999999999999999999974

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.23  E-value=0.00098  Score=57.45  Aligned_cols=67  Identities=9%  Similarity=0.027  Sum_probs=47.8

Q ss_pred             EEEEcCchHHHHHHHHHhhc---CCeEEEEEeCCCCCch--------------HHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          18 TDVIGGGNTAVEEALYLSNI---AKKVTLIHRNEKLRCE--------------KILIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~--------------~~~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      |+|||+|+.|+.+|..|.+.   +.+|||+++.+.+...              +++.....+.+++.||+++++++|.+|
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            38999999999999998775   4689999987653211              111111234455789999999999888


Q ss_pred             ecCC
Q psy5231          81 IGNN   84 (148)
Q Consensus        81 ~~~~   84 (148)
                      ..+.
T Consensus        81 d~~~   84 (785)
T TIGR02374        81 DTDQ   84 (785)
T ss_pred             ECCC
Confidence            7654

>PLN02529 lysine-specific histone demethylase 1

Probab=97.23  E-value=0.0005  Score=58.68  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=32.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      ++|+|||+|..|+.+|..|++.|.+|+++|.++++.+
T Consensus       161 ~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG  197 (738)
T PLN02529        161 GSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG  197 (738)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence            4559999999999999999999999999999776543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.22  E-value=0.00049  Score=58.14  Aligned_cols=32  Identities=34%  Similarity=0.405  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+++..
T Consensus       262 dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        262 DAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            45999999999999999999999999999864

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.22  E-value=0.00047  Score=55.34  Aligned_cols=30  Identities=30%  Similarity=0.355  Sum_probs=28.2

Q ss_pred             eEEEEcCchHHHHHHHHHhh----cCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSN----IAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~----~g~~Vtlv~~   46 (148)
                      +|+|||||++|+-+|..|++    .|.+|+++|+
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~   35 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA   35 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence            45999999999999999998    7999999998

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.21  E-value=0.00048  Score=57.74  Aligned_cols=41  Identities=20%  Similarity=0.131  Sum_probs=32.9

Q ss_pred             ccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         108 TSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       108 ~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      .+|++||+||+|||+...-+++...+..+|.+|+.++.+++
T Consensus       402 ~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~  442 (614)
T TIGR02061       402 RMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWI  442 (614)
T ss_pred             CccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHH
Confidence            78999999999999653213567788899999999887753

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.21  E-value=0.0006  Score=55.44  Aligned_cols=34  Identities=15%  Similarity=0.320  Sum_probs=31.3

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      ++|||||.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus         2 v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G   35 (474)
T TIGR02732         2 VAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG   35 (474)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            5999999999999999999999999999977654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02985 squalene monooxygenase

Probab=97.21  E-value=0.00061  Score=56.00  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||..|+-+|..|++.|.+|+++|+..
T Consensus        45 DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         45 DVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            56999999999999999999999999999864

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.20  E-value=0.00041  Score=55.59  Aligned_cols=45  Identities=27%  Similarity=0.187  Sum_probs=40.7

Q ss_pred             eEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231          96 YIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        96 ~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      .+.+|+.     ++|+++|+|++||.++..  +.+..|+.+|.++|..|.+.
T Consensus       438 ri~~d~~-----~~t~i~gLy~aGdGAG~a--rgI~~Aaa~Gi~~A~~i~~k  482 (486)
T COG2509         438 RIKVDED-----LSTSIKGLYPAGDGAGLA--RGIVSAAADGIKAAEGIARK  482 (486)
T ss_pred             eEeeccc-----ceeeecceEEcccccccc--chhHHHhhhhHHHHHHHHHH
Confidence            5677888     999999999999999987  78999999999999999874

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.20  E-value=0.00049  Score=54.06  Aligned_cols=31  Identities=32%  Similarity=0.365  Sum_probs=28.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhc---CCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI---AKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~---g~~Vtlv~~~   47 (148)
                      +|+|||||++|+-+|..|++.   |.+|+|+|+.
T Consensus         5 dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          5 DVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            359999999999999999998   9999999983

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.20  E-value=0.00044  Score=55.82  Aligned_cols=31  Identities=26%  Similarity=0.294  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..+++.|++|+|+++.
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~   34 (450)
T TIGR01421         4 DYLVIGGGSGGIASARRAAEHGAKALLVEAK   34 (450)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence            4599999999999999999999999999974

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.19  E-value=0.00056  Score=56.36  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..|++.|.+|+++|+.+.
T Consensus        12 dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~   44 (538)
T PRK06183         12 DVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT   44 (538)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            349999999999999999999999999998653

>PRK07190 hypothetical protein; Provisional

Probab=97.18  E-value=0.0006  Score=55.64  Aligned_cols=32  Identities=13%  Similarity=0.166  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus         7 dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~   38 (487)
T PRK07190          7 DVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD   38 (487)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            45999999999999999999999999999864

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.17  E-value=0.00065  Score=55.05  Aligned_cols=32  Identities=34%  Similarity=0.510  Sum_probs=29.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++++|||+|+.|+++|..+++.|.+|+++++.
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~   33 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD   33 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            45699999999999999999999999999975

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.17  E-value=0.00056  Score=54.29  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=28.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|..|+-+|..+++.|.+|.|+++.+.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~   33 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR   33 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence            469999999999999999999999999998654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.17  E-value=0.00084  Score=50.75  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=30.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+|+|||+|..|+-+|..|+..|.+||+++++
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg   33 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKG   33 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcC
Confidence            36799999999999999999999999999985

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.16  E-value=0.0006  Score=55.13  Aligned_cols=31  Identities=23%  Similarity=0.343  Sum_probs=28.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~   47 (148)
                      +|+|||||.+|+-+|.+|++.  |.+|+|+++.
T Consensus        26 DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~   58 (460)
T TIGR03329        26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD   58 (460)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            569999999999999999998  8999999974

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>KOG2755|consensus

Probab=97.14  E-value=0.00092  Score=50.30  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=23.0

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCcc
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRL  124 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~  124 (148)
                      .|.+.+|..     ++|+.|++|++||++..
T Consensus       297 dggikvdd~-----m~tslpdvFa~gDvctt  322 (334)
T KOG2755|consen  297 DGGIKVDDA-----METSLPDVFAAGDVCTT  322 (334)
T ss_pred             ccCeeehhh-----ccccccceeeecceecc
Confidence            477888888     99999999999999874

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.13  E-value=0.00077  Score=56.20  Aligned_cols=49  Identities=24%  Similarity=0.203  Sum_probs=38.8

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCccc--c-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY--F-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~--~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      .|.|.+|..     .+|++||+||+|+|++..  +     -..+..|+-.|++|+.++..+
T Consensus       358 ~GGi~vd~~-----~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~  413 (582)
T PRK09231        358 MGGIETDQN-----CETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAER  413 (582)
T ss_pred             CCCEEECCC-----CccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence            477889988     899999999999986421  0     135678889999999998765

>TIGR02053 MerA mercuric reductase

Probab=97.12  E-value=0.00072  Score=54.61  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|||+|+.|+.+|..+++.|++|+++++.
T Consensus         2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~   32 (463)
T TIGR02053         2 DLVIIGSGAAAFAAAIKAAELGASVAMVERG   32 (463)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4699999999999999999999999999974

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.12  E-value=0.0044  Score=49.46  Aligned_cols=67  Identities=19%  Similarity=0.208  Sum_probs=46.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCCc-------------hHHHHHHHHhHHh-cCCcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLRC-------------EKILIDRLMQKVN-EGKIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~-------------~~~~~~~l~~~l~-~~~v~i~~~~~v~~i   80 (148)
                      +|||||||..|+.+|..|.+.-  .+||||++++...-             .....-.+++.++ ..+++++. .+|.+|
T Consensus         5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~-~~V~~I   83 (405)
T COG1252           5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQ-GEVTDI   83 (405)
T ss_pred             eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEE-EEEEEE
Confidence            4599999999999999999874  88999999765321             1122223444444 34588885 467777


Q ss_pred             ecCC
Q psy5231          81 IGNN   84 (148)
Q Consensus        81 ~~~~   84 (148)
                      ..+.
T Consensus        84 D~~~   87 (405)
T COG1252          84 DRDA   87 (405)
T ss_pred             cccC
Confidence            6554

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.12  E-value=0.00078  Score=54.32  Aligned_cols=30  Identities=33%  Similarity=0.378  Sum_probs=28.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|||||+.|+.+|..|++.|++|.+|++
T Consensus         5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~   34 (460)
T PRK06292          5 DVIVIGAGPAGYVAARRAAKLGKKVALIEK   34 (460)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            459999999999999999999999999998

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.12  E-value=0.00075  Score=55.07  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.  |.+|+|+|+.+
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~   35 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD   35 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            469999999999999999997  99999999853

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02463 lycopene beta cyclase

Probab=97.10  E-value=0.00074  Score=54.62  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+.+|..|++.|.+|.++++.+
T Consensus        30 DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         30 DLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            56999999999999999999999999999853

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.09  E-value=0.00061  Score=44.00  Aligned_cols=36  Identities=36%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..+|+++    +|||||.+|..-+..|.+.|.+||++...
T Consensus         4 ~l~~~~v----lVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    4 DLKGKRV----LVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             --TT-EE----EEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             EcCCCEE----EEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            4567888    99999999999999999999999999865

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.09  E-value=0.00071  Score=46.98  Aligned_cols=32  Identities=38%  Similarity=0.419  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|+|+|..|.-+|..|+..|.+|+|+.|++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            46999999999999999999999999998853

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.08  E-value=0.00094  Score=53.53  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~   49 (148)
                      +|+|||+|.+|+-+|..+++.| .+|+|+++.+.
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~   34 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV   34 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC
Confidence            3699999999999999999999 99999998543

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.07  E-value=0.00081  Score=56.83  Aligned_cols=32  Identities=22%  Similarity=0.155  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+-+|..|++.|.+|+|+||.+
T Consensus        83 ~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         83 RVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            45999999999999999999999999999864

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.07  E-value=0.0011  Score=51.12  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=33.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +++|||+|.+|.-+|..+++.|++|-+|++++.+.+
T Consensus         3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG   38 (374)
T COG0562           3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG   38 (374)
T ss_pred             cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence            459999999999999999999999999999988865

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.07  E-value=0.00083  Score=54.36  Aligned_cols=31  Identities=16%  Similarity=0.279  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..+++.|++|+|+++.
T Consensus         6 DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          6 DVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3599999999999999999999999999974

>PLN02487 zeta-carotene desaturase

Probab=97.03  E-value=0.0011  Score=55.08  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=31.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      +|+|||+|..|+-+|..|++.|++|+++|+.+.+.
T Consensus        77 ~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g  111 (569)
T PLN02487         77 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG  111 (569)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence            45999999999999999999999999999876653

>KOG1298|consensus

Probab=97.01  E-value=0.0014  Score=51.87  Aligned_cols=31  Identities=23%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|..|..+|..|++.|.+|++|||.
T Consensus        47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   47 DVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            4699999999999999999999999999994

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.00  E-value=0.0011  Score=55.93  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-CCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|+++ |.+|+|+++.+
T Consensus        34 dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~   66 (634)
T PRK08294         34 DVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP   66 (634)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence            459999999999999999996 99999999864

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.00  E-value=0.0011  Score=52.34  Aligned_cols=33  Identities=24%  Similarity=0.242  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHH--hhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYL--SNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l--~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|++|+-+|..|  ++.|.+|.++++.++
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~   35 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK   35 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            469999999999999999  788999999987543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.98  E-value=0.0012  Score=53.37  Aligned_cols=31  Identities=35%  Similarity=0.398  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..+++.|++|++|++.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~   32 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA   32 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4599999999999999999999999999985

>PRK14727 putative mercuric reductase; Provisional

Probab=96.98  E-value=0.0012  Score=53.75  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +++|||+|+.|+.+|..+++.|.+|+++++.+
T Consensus        18 dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~   49 (479)
T PRK14727         18 HVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD   49 (479)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            45999999999999999999999999999863

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=96.98  E-value=0.0012  Score=53.37  Aligned_cols=32  Identities=34%  Similarity=0.369  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|.+|+-+|..+++.|.+|+|+|+.+
T Consensus         6 DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~   37 (466)
T PRK08274          6 DVLVIGGGNAALCAALAAREAGASVLLLEAAP   37 (466)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            45999999999999999999999999999854

>PTZ00367 squalene epoxidase; Provisional

Probab=96.98  E-value=0.0011  Score=55.20  Aligned_cols=32  Identities=25%  Similarity=0.263  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+-+|..|++.|.+|+++||..
T Consensus        35 dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         35 DVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            45999999999999999999999999999864

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.97  E-value=0.0012  Score=56.78  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=32.2

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      ++|+|||+|.+|+.+|..|.+.|.+|++++.++++.
T Consensus       239 ~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G  274 (808)
T PLN02328        239 ANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG  274 (808)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence            345999999999999999999999999999977654

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.96  E-value=0.0015  Score=51.49  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+.+|..|++.  |.+|.++++.+.+
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~   36 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI   36 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            359999999999999999987  9999999986643

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=96.95  E-value=0.0012  Score=52.20  Aligned_cols=31  Identities=23%  Similarity=0.505  Sum_probs=27.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-C-CeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-A-KKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-g-~~Vtlv~~~   47 (148)
                      +|+|||||.+|+-+|..|++. | ++|+|+++.
T Consensus        32 dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~   64 (407)
T TIGR01373        32 DVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG   64 (407)
T ss_pred             CEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            349999999999999999985 8 599999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK13748 putative mercuric reductase; Provisional

Probab=96.94  E-value=0.0013  Score=54.41  Aligned_cols=31  Identities=39%  Similarity=0.527  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..+++.|.+|.||++.
T Consensus       100 DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748        100 HVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4599999999999999999999999999985

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.94  E-value=0.0011  Score=51.86  Aligned_cols=38  Identities=39%  Similarity=0.415  Sum_probs=28.1

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCC--eEEEEEeCCCC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK--KVTLIHRNEKL   50 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~   50 (148)
                      ..+++|    +|||||.+|.|++..|.+.+.  +|+++.|+..+
T Consensus       188 ~~~~~V----~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~  227 (341)
T PF13434_consen  188 LAGKRV----AVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF  227 (341)
T ss_dssp             ---EEE----EEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred             cCCCeE----EEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence            345555    999999999999999998864  89999997543

>PRK07121 hypothetical protein; Validated

Probab=96.92  E-value=0.0016  Score=53.04  Aligned_cols=33  Identities=18%  Similarity=0.199  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|..|+-+|..+++.|.+|+|+++...
T Consensus        22 DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~   54 (492)
T PRK07121         22 DVVVVGFGAAGACAAIEAAAAGARVLVLERAAG   54 (492)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            459999999999999999999999999998543

>PLN02612 phytoene desaturase

Probab=96.92  E-value=0.0017  Score=54.05  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      ++|+|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus        94 ~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~  128 (567)
T PLN02612         94 LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL  128 (567)
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            34599999999999999999999999999987654

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=96.92  E-value=0.0015  Score=54.42  Aligned_cols=49  Identities=24%  Similarity=0.196  Sum_probs=38.6

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCccc--c-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY--F-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~--~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      .|.+.+|..     .+|++||+||+|+|+...  +     -..+..|+-.|++|+.++..+
T Consensus       357 ~GGi~~d~~-----~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~  412 (580)
T TIGR01176       357 MGGIETDIN-----CETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAER  412 (580)
T ss_pred             CCCeeECcC-----cccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence            467889998     899999999999986321  0     135678889999999998765

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.91  E-value=0.0046  Score=44.94  Aligned_cols=36  Identities=25%  Similarity=0.342  Sum_probs=32.1

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ...|+++    +|||||.+|..-+..|.+.|.+||++...
T Consensus         6 ~l~gk~v----lVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470         6 NLEGRAV----LVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             EcCCCeE----EEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3567888    99999999999999999999999999753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK14694 putative mercuric reductase; Provisional

Probab=96.90  E-value=0.0014  Score=53.06  Aligned_cols=31  Identities=39%  Similarity=0.551  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..|++.|.+|.+|++.
T Consensus         8 dviVIGaG~aG~~aA~~l~~~g~~v~lie~~   38 (468)
T PRK14694          8 HIAVIGSGGSAMAAALKATERGARVTLIERG   38 (468)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence            4599999999999999999999999999975

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.88  E-value=0.0015  Score=53.56  Aligned_cols=30  Identities=33%  Similarity=0.334  Sum_probs=28.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|||||+.|+.+|..+++.|++|.||++
T Consensus         7 DviVIG~GpaG~~AA~~aa~~G~~V~lie~   36 (499)
T PTZ00052          7 DLVVIGGGSGGMAAAKEAAAHGKKVALFDY   36 (499)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            349999999999999999999999999996

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.88  E-value=0.0017  Score=53.83  Aligned_cols=48  Identities=25%  Similarity=0.252  Sum_probs=37.2

Q ss_pred             CeEEecCCCCccccc----CCCCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          95 GYIKTKLNKKTGYTS----TNISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        95 g~i~vd~~~~~~~~~----t~~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |.+.+|..     .+    |++||+||+|+|++.  .+     -..+..|+-.|++|+.++.++
T Consensus       343 GGi~id~~-----~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~  401 (566)
T TIGR01812       343 GGIPTDYT-----GRVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEY  401 (566)
T ss_pred             CCeEECcC-----cccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHH
Confidence            56777777     77    999999999998642  10     035788899999999998765

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.87  E-value=0.0051  Score=49.49  Aligned_cols=59  Identities=25%  Similarity=0.342  Sum_probs=42.2

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      .+|++    +|+|+|.+|+.+|..|++.|++|+++++...    +.+ +...+.|++.|++++.....
T Consensus         4 ~~k~v----~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~----~~~-~~~~~~l~~~~~~~~~~~~~   62 (450)
T PRK14106          4 KGKKV----LVVGAGVSGLALAKFLKKLGAKVILTDEKEE----DQL-KEALEELGELGIELVLGEYP   62 (450)
T ss_pred             CCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCch----HHH-HHHHHHHHhcCCEEEeCCcc
Confidence            56777    9999999999999999999999999987532    112 22222334567887655443

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.87  E-value=0.0016  Score=53.55  Aligned_cols=32  Identities=31%  Similarity=0.313  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||..|+-+|..++.+|.+|.|+|+.+
T Consensus        14 DviVIGGGitG~GiArDaA~RGl~v~LvE~~D   45 (532)
T COG0578          14 DVIVIGGGITGAGIARDAAGRGLKVALVEKGD   45 (532)
T ss_pred             CEEEECCchhhHHHHHHHHhCCCeEEEEecCc
Confidence            45999999999999999999999999999964

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=96.87  E-value=0.0018  Score=53.10  Aligned_cols=33  Identities=9%  Similarity=0.208  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|..|+-+|..+++.|.+|+|+|+.+.
T Consensus        63 DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~   95 (506)
T PRK06481         63 DIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV   95 (506)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            459999999999999999999999999998654

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.87  E-value=0.0018  Score=53.47  Aligned_cols=49  Identities=20%  Similarity=0.091  Sum_probs=38.5

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCccc-c-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY-F-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~-~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.+.+|..     .+|++||+||+|++++.. +     -..+..|+-.|++|+.++.++
T Consensus       348 ~GGi~vd~~-----~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~  402 (543)
T PRK06263        348 MGGIRINED-----CETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKN  402 (543)
T ss_pred             cCCEEECCC-----CcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHH
Confidence            367889998     899999999999986431 0     124567889999999998765

>PLN02676 polyamine oxidase

Probab=96.85  E-value=0.0018  Score=52.95  Aligned_cols=36  Identities=14%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~   52 (148)
                      +|+|||+|.+|+-+|..|++.|. +|+++|+++++.+
T Consensus        28 ~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG   64 (487)
T PLN02676         28 SVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG   64 (487)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence            34999999999999999999997 6999999876543

>KOG1399|consensus

Probab=96.85  E-value=0.00088  Score=54.15  Aligned_cols=41  Identities=32%  Similarity=0.278  Sum_probs=37.5

Q ss_pred             chhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231           2 QYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus         2 ~~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|..+..+.||+|    +|||.|++|+|+|..++..+++|++..+
T Consensus       177 ~Yk~~e~f~~k~V----lVIG~g~SG~DIs~d~~~~ak~v~~~~~  217 (448)
T KOG1399|consen  177 DYKSPEKFRDKVV----LVVGCGNSGMDISLDLLRVAKEVHLSVV  217 (448)
T ss_pred             hccCcccccCceE----EEECCCccHHHHHHHHHHhccCcceeee
Confidence            6888889999999    9999999999999999999999998864

>PRK06996 hypothetical protein; Provisional

Probab=96.82  E-value=0.0017  Score=51.48  Aligned_cols=31  Identities=23%  Similarity=0.401  Sum_probs=27.6

Q ss_pred             EEEEcCchHHHHHHHHHhhcC----CeEEEEEeCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIA----KKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g----~~Vtlv~~~~   48 (148)
                      |+|||||++|+-+|..|++.|    .+|+|+++.+
T Consensus        14 v~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996         14 IAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             EEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            499999999999999999986    4799999853

>PRK09077 L-aspartate oxidase; Provisional

Probab=96.82  E-value=0.0024  Score=52.80  Aligned_cols=49  Identities=20%  Similarity=0.098  Sum_probs=37.9

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|..     .+|++||+||+|+|+. + .+     -..+..|+-.|++|+.++..+
T Consensus       353 ~GGi~vd~~-----~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~  408 (536)
T PRK09077        353 CGGVMVDLH-----GRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSR  408 (536)
T ss_pred             cCCeeECCC-----CccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence            367888988     8999999999999863 2 11     125678888999999988654

>PLN02661 Putative thiazole synthesis

Probab=96.81  E-value=0.0021  Score=50.43  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-CCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~   49 (148)
                      +|+|||+|.+|+-+|..|++. |.+|+++++...
T Consensus        94 DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~  127 (357)
T PLN02661         94 DVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS  127 (357)
T ss_pred             CEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence            449999999999999999975 899999998543

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=96.81  E-value=0.0018  Score=53.04  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|.+|++.  +.+|+|+||.+
T Consensus         7 DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~   40 (494)
T PRK05257          7 DVVLIGGGIMSATLGTLLKELEPEWSITMFERLD   40 (494)
T ss_pred             eEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            459999999999999999985  78999999854

>PLN03000 amine oxidase

Probab=96.81  E-value=0.0021  Score=55.77  Aligned_cols=37  Identities=19%  Similarity=0.225  Sum_probs=32.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      ++|+|||+|.+|+.+|..|.+.|.+|++++.++++.+
T Consensus       185 ~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG  221 (881)
T PLN03000        185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG  221 (881)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence            3459999999999999999999999999999877654

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=96.80  E-value=0.0019  Score=52.22  Aligned_cols=36  Identities=28%  Similarity=0.081  Sum_probs=32.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +|+|||+|..++-+|..|++.|++|.++++.+.+++
T Consensus         6 DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG   41 (443)
T PTZ00363          6 DVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG   41 (443)
T ss_pred             eEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence            359999999999999999999999999999887755

>PLN02546 glutathione reductase

Probab=96.80  E-value=0.0019  Score=53.69  Aligned_cols=30  Identities=20%  Similarity=0.236  Sum_probs=28.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|||+|+.|..+|..+++.|++|.|+|+
T Consensus        81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         81 DLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            359999999999999999999999999995

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.79  E-value=0.0024  Score=53.53  Aligned_cols=49  Identities=22%  Similarity=0.195  Sum_probs=38.2

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCccc-c-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY-F-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~-~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      .|.|.+|..     .+|++||+||+|+|++.. +     -..+..++-.|++||.++..+
T Consensus       370 ~gG~~~d~~-----~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~  424 (603)
T TIGR01811       370 MGGLWVDYD-----QMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPN  424 (603)
T ss_pred             CCCeeECCC-----CcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            377899998     999999999999986432 0     135677888899999887654

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.77  E-value=0.0026  Score=52.91  Aligned_cols=48  Identities=17%  Similarity=0.181  Sum_probs=37.3

Q ss_pred             CeEEecCCCCcccccCC-CCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          95 GYIKTKLNKKTGYTSTN-ISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        95 g~i~vd~~~~~~~~~t~-~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |.|.+|..     .+|+ +||+||+|+|++.  .+     -..+..++-.|++|+.++.++
T Consensus       347 GGi~vd~~-----~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~  402 (566)
T PRK06452        347 GGIDVDID-----GRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQF  402 (566)
T ss_pred             CCeEECCC-----CCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            67888887     8885 9999999999642  11     125678889999999998765

>KOG2415|consensus

Probab=96.76  E-value=0.01  Score=47.67  Aligned_cols=31  Identities=16%  Similarity=0.395  Sum_probs=25.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhc------CCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI------AKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~------g~~Vtlv~~~   47 (148)
                      +|+|||+|+.|+.+|..|.+.      ..+|.++|..
T Consensus        78 Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKa  114 (621)
T KOG2415|consen   78 DVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKA  114 (621)
T ss_pred             cEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeec
Confidence            459999999999999998765      2467788764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.75  E-value=0.0023  Score=44.57  Aligned_cols=34  Identities=32%  Similarity=0.319  Sum_probs=31.2

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEE
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIH   45 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~   45 (148)
                      ...|+++    +|||||.+|..-+..|.+.|.+|++|.
T Consensus        10 ~l~~~~v----lVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         10 NLHNKVV----VIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             EcCCCEE----EEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4578888    999999999999999999999999994

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=96.75  E-value=0.0027  Score=52.69  Aligned_cols=36  Identities=17%  Similarity=0.288  Sum_probs=30.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhc----CCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI----AKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~~~   52 (148)
                      +++|||||..|+.+|..|.+.    |.+|||+|+.+.+.+
T Consensus        24 ~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG   63 (576)
T PRK13977         24 KAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGG   63 (576)
T ss_pred             eEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCC
Confidence            459999999999999999985    679999999776543

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=96.75  E-value=0.0022  Score=51.92  Aligned_cols=32  Identities=28%  Similarity=0.351  Sum_probs=26.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC---CeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA---KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g---~~Vtlv~~~~   48 (148)
                      +|+|||||..|.-+|..|++.+   .+|||||+.+
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~   35 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD   35 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence            4699999999999999999998   8899999864

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.74  E-value=0.0025  Score=54.83  Aligned_cols=33  Identities=33%  Similarity=0.459  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~   49 (148)
                      +|+|||||+.|+-+|..|++.  |.+|+|+|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            469999999999999999998  899999998654

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=96.73  E-value=0.0029  Score=47.85  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~   52 (148)
                      +++|||+|..|+-+|..|++.+ .+|.|+|+.+....
T Consensus         2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~   38 (296)
T PF00732_consen    2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP   38 (296)
T ss_dssp             EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence            4599999999999999999997 69999999876543

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=96.73  E-value=0.0025  Score=52.32  Aligned_cols=32  Identities=25%  Similarity=0.247  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+| +|+-+|..+++.|.+|+|+++.+.
T Consensus         9 DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~   40 (513)
T PRK12837          9 DVLVAGSG-GGVAGAYTAAREGLSVALVEATDK   40 (513)
T ss_pred             CEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence            45999999 999999999999999999997543

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=96.72  E-value=0.0024  Score=52.36  Aligned_cols=32  Identities=34%  Similarity=0.467  Sum_probs=28.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|.+|++.+  .+|+|+|+.+
T Consensus        47 DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         47 DVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             cEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            5699999999999999999964  6999999864

>PLN02697 lycopene epsilon cyclase

Probab=96.72  E-value=0.0024  Score=52.71  Aligned_cols=31  Identities=26%  Similarity=0.213  Sum_probs=28.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||++|+.+|..|++.|.+|.++++.
T Consensus       110 DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~  140 (529)
T PLN02697        110 DLVVIGCGPAGLALAAESAKLGLNVGLIGPD  140 (529)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence            5699999999999999999999999999864

>PTZ00058 glutathione reductase; Provisional

Probab=96.72  E-value=0.0024  Score=53.15  Aligned_cols=31  Identities=29%  Similarity=0.368  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|+.|..+|..+++.|.+|.+|++.
T Consensus        50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            4699999999999999999999999999974

>PLN02568 polyamine oxidase

Probab=96.72  E-value=0.0028  Score=52.43  Aligned_cols=34  Identities=18%  Similarity=0.307  Sum_probs=30.1

Q ss_pred             EEEEcCchHHHHHHHHHhhcC-----CeEEEEEeCCCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIA-----KKVTLIHRNEKLR   51 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g-----~~Vtlv~~~~~~~   51 (148)
                      |+|||+|.+|+-+|..|++.|     .+|+|+|+++++.
T Consensus         8 v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G   46 (539)
T PLN02568          8 IVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG   46 (539)
T ss_pred             EEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence            499999999999999999877     8999999876653

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=96.72  E-value=0.0028  Score=52.79  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|..|+.+|..+++.|.+|+|+++...
T Consensus        11 DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~   43 (574)
T PRK12842         11 DVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV   43 (574)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            459999999999999999999999999998654

>PRK08401 L-aspartate oxidase; Provisional

Probab=96.72  E-value=0.0027  Score=51.56  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=29.4

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+|+|||+|.+|+-+|..+++.|.+|+|+++.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~   33 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG   33 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            35699999999999999999999999999874

>PRK08071 L-aspartate oxidase; Provisional

Probab=96.71  E-value=0.0032  Score=51.71  Aligned_cols=48  Identities=25%  Similarity=0.128  Sum_probs=36.7

Q ss_pred             CeEEecCCCCcccccCCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          95 GYIKTKLNKKTGYTSTNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |.|.+|..     .+|++||+||+|+|+. . .+     -..+..+.-.|++|+.++..+
T Consensus       333 GGi~vd~~-----~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~  387 (510)
T PRK08071        333 GGVKTNLD-----GETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK  387 (510)
T ss_pred             CCEEECCC-----CcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence            77899998     8999999999999964 1 10     024567778889999888653

>PRK07804 L-aspartate oxidase; Provisional

Probab=96.70  E-value=0.003  Score=52.25  Aligned_cols=48  Identities=19%  Similarity=0.103  Sum_probs=35.5

Q ss_pred             CeEEecCCCCcccccCCCCCeEEecccCcc--cc-c----hhHHHHHHHHHHHHHHHHhh
Q psy5231          95 GYIKTKLNKKTGYTSTNISGVFCRWRCTRL--YF-I----DKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~~--~~-~----~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |.|.+|..     ++|++||+||+|||+..  .+ .    ..+..+.-.|++|+.++.++
T Consensus       358 GGi~vd~~-----~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~  412 (541)
T PRK07804        358 GGVVTDVY-----GRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAH  412 (541)
T ss_pred             CCEEECCC-----CcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence            77899988     89999999999999631  10 0    13455667788888887654

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=96.69  E-value=0.0029  Score=51.90  Aligned_cols=30  Identities=13%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~   46 (148)
                      +|+|||||.+|+.+|..|++.  +.+|+|+||
T Consensus         8 DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          8 DVVLVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             CEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            459999999999999999998  899999999

>TIGR00275 flavoprotein, HI0933 family

Probab=96.69  E-value=0.0018  Score=51.57  Aligned_cols=31  Identities=29%  Similarity=0.466  Sum_probs=28.5

Q ss_pred             EEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          19 DVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        19 ~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|||||++|+-+|..+++.|.+|+|+|+.+.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~   31 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK   31 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc
Confidence            4899999999999999999999999998654

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.69  E-value=0.0029  Score=52.48  Aligned_cols=32  Identities=13%  Similarity=0.183  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|.+|+-+|..+++.|.+|+|+++..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~   32 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY   32 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            36999999999999999999999999999743

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=96.68  E-value=0.0032  Score=50.58  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=30.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~   50 (148)
                      +|+|||||.+|+.+|.+|++..  .+|+|+|+.+.+
T Consensus         5 DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~   40 (429)
T COG0579           5 DVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV   40 (429)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence            4699999999999999999998  999999995543

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=96.68  E-value=0.003  Score=51.01  Aligned_cols=32  Identities=16%  Similarity=0.344  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCe-EEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKK-VTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|.+.|.. +.++|+.+
T Consensus        10 ~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~   42 (443)
T COG2072          10 DVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD   42 (443)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence            459999999999999999999988 99999865

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.66  E-value=0.0026  Score=53.19  Aligned_cols=49  Identities=29%  Similarity=0.378  Sum_probs=38.6

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCccc-c-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY-F-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~-~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|..     .+|++||+||+|+|+... +     -..+..|+-.|++|+.++.++
T Consensus       355 ~GGi~vd~~-----~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~  409 (589)
T PRK08641        355 MGGLWVDYD-----QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEY  409 (589)
T ss_pred             CCCeEECCC-----CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence            378899998     899999999999987321 0     125678888999999988765

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.66  E-value=0.004  Score=42.50  Aligned_cols=47  Identities=23%  Similarity=0.293  Sum_probs=36.6

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCc
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      |+|+|+|.+|.-+|..|++.|.+|+++.|++       ..+.++    +.|+.+....
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-------~~~~~~----~~g~~~~~~~   47 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-------RLEAIK----EQGLTITGPD   47 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-------HHHHHH----HHCEEEEETT
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-------cHHhhh----heeEEEEecc
Confidence            4899999999999999999999999998742       233344    4677776544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PLN02507 glutathione reductase

Probab=96.65  E-value=0.0028  Score=51.95  Aligned_cols=30  Identities=30%  Similarity=0.329  Sum_probs=28.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +++|||+|+.|+.+|..+++.|++|.+|++
T Consensus        27 DvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         27 DLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            359999999999999999999999999995

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.63  E-value=0.0031  Score=51.25  Aligned_cols=30  Identities=27%  Similarity=0.267  Sum_probs=28.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +++|||||+.|+.+|..+++.|.+|.++++
T Consensus         6 DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          6 DVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            459999999999999999999999999997

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.63  E-value=0.0034  Score=45.47  Aligned_cols=35  Identities=26%  Similarity=0.318  Sum_probs=31.5

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      ...|+++    +|||||.+|...+..|.+.|.+|+++.+
T Consensus         7 ~l~~k~v----LVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          7 DLSNKRV----VIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             EcCCCEE----EEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            3567888    9999999999999999999999999974

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.61  E-value=0.003  Score=53.36  Aligned_cols=44  Identities=16%  Similarity=0.100  Sum_probs=34.0

Q ss_pred             CeEEecCCCCcccccCCCCCeEEecccCccc-c-----chhHHHHHHHHHHHHHH
Q psy5231          95 GYIKTKLNKKTGYTSTNISGVFCRWRCTRLY-F-----IDKQLLALGSGCMAALD  143 (148)
Q Consensus        95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~-~-----~~~~~~A~~~G~~aA~~  143 (148)
                      |.|.+|..     .+|++||+||+|+|+... +     -..+..|.-.|++|+.+
T Consensus       407 GGi~vd~~-----~~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~  456 (640)
T PRK07573        407 GGLWVDYN-----LMSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPY  456 (640)
T ss_pred             CCEEECCC-----CccccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHH
Confidence            67889998     999999999999997432 0     02467888888888755

>KOG1800|consensus

Probab=96.56  E-value=0.0076  Score=47.65  Aligned_cols=36  Identities=6%  Similarity=-0.116  Sum_probs=27.8

Q ss_pred             CCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231         111 NISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       111 ~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      ..|++|++|=+..+| ..-+...+.++..+|..|...
T Consensus       370 ~~pglY~sGW~k~GP-~GvIattm~dAf~v~d~I~qD  405 (468)
T KOG1800|consen  370 CSPGLYASGWVKHGP-TGVIATTMQDAFEVADTIVQD  405 (468)
T ss_pred             cCCceEEEeeeccCC-cceeeehhhhHHHHHHHHHHH
Confidence            359999999998876 445667788888888887653

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.55  E-value=0.0089  Score=48.24  Aligned_cols=55  Identities=22%  Similarity=0.247  Sum_probs=39.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCce
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHI   76 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~   76 (148)
                      +|.|+|.|.+|+.+|..|.+.|.+|+++++..... .......    |+..|+.++++..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~-~~~~~~~----l~~~gi~~~~g~~   56 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE-LLERQQE----LEQEGITVKLGKP   56 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh-hHHHHHH----HHHcCCEEEECCc
Confidence            35999999999999999999999999998764321 1111222    3357888876553

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.55  E-value=0.0042  Score=50.81  Aligned_cols=30  Identities=27%  Similarity=0.372  Sum_probs=28.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-CCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~   46 (148)
                      +|+|||||+.|..+|..+++. |++|.||++
T Consensus         5 DviVIG~G~~G~~aA~~aa~~~g~~V~lie~   35 (486)
T TIGR01423         5 DLVVIGAGSGGLEAGWNAATLYKKRVAVIDV   35 (486)
T ss_pred             CEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence            459999999999999999996 999999997

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.54  E-value=0.0041  Score=52.34  Aligned_cols=50  Identities=20%  Similarity=0.190  Sum_probs=37.9

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCccc------cchhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY------FIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~------~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|...    .+|++||+||+|+|++..      +-..+..|+-.|++|+.++.++
T Consensus       391 ~GGi~vd~~~----~~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~  446 (626)
T PRK07803        391 MGGVEVDPDT----GAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADY  446 (626)
T ss_pred             cCCEEEcCCC----CeeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHH
Confidence            3778888762    469999999999986531      0136778889999999988765

>TIGR00551 nadB L-aspartate oxidase

Probab=96.54  E-value=0.0051  Score=50.20  Aligned_cols=48  Identities=23%  Similarity=0.113  Sum_probs=37.4

Q ss_pred             CeEEecCCCCcccccCCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          95 GYIKTKLNKKTGYTSTNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |.|.+|..     .+|++||+||+|+|+. . .+     -..+..|+-.|++|+.++..+
T Consensus       334 GGi~vd~~-----~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~  388 (488)
T TIGR00551       334 GGISVDDH-----GRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR  388 (488)
T ss_pred             CCEEECCC-----CcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence            77899998     8999999999999963 2 10     125677888999999988653

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK09897 hypothetical protein; Provisional

Probab=96.53  E-value=0.0046  Score=51.13  Aligned_cols=35  Identities=11%  Similarity=0.261  Sum_probs=29.1

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCC--eEEEEEeCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAK--KVTLIHRNEKL   50 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~   50 (148)
                      ++|+|||||++|+-+|..|.+.+.  +|+|++++..+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            456999999999999999987644  89999985543

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=96.51  E-value=0.0048  Score=49.52  Aligned_cols=34  Identities=15%  Similarity=0.347  Sum_probs=31.5

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      |+|+|+|.+|+-.|.+|.+.|.+|+++|-++++.
T Consensus        10 viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~G   43 (450)
T COG1231          10 VIIVGAGLAGLSAAYELKKAGYQVQILEARDRVG   43 (450)
T ss_pred             EEEECCchHHHHHHHHHhhcCcEEEEEeccCCcC
Confidence            3999999999999999999999999999887764

>PRK07804 L-aspartate oxidase; Provisional

Probab=96.51  E-value=0.0048  Score=51.05  Aligned_cols=32  Identities=19%  Similarity=0.320  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++.|.+|+|+++..
T Consensus        18 DVlVIG~G~AGl~AAi~aae~G~~VilleK~~   49 (541)
T PRK07804         18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAA   49 (541)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence            45999999999999999999999999999854

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.49  E-value=0.0042  Score=51.73  Aligned_cols=48  Identities=19%  Similarity=0.176  Sum_probs=36.7

Q ss_pred             CeEEecCCCCcccccCC------CCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          95 GYIKTKLNKKTGYTSTN------ISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        95 g~i~vd~~~~~~~~~t~------~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |.+.+|..     .+|+      +||+||+|+|++.  .+     -..+..|+-.|++|+.++.++
T Consensus       353 GGi~vd~~-----~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~  413 (577)
T PRK06069        353 GGIHTDVY-----GRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEY  413 (577)
T ss_pred             CCceECCC-----CcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            55677777     8888      9999999999752  10     124678889999999988765

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.48  E-value=0.0048  Score=51.53  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=30.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||+|..|+-+|..+++.|.+|.|+++.+..
T Consensus        13 DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~   46 (584)
T PRK12835         13 DVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF   46 (584)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence            3599999999999999999999999999986543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.48  E-value=0.0054  Score=43.59  Aligned_cols=32  Identities=28%  Similarity=0.319  Sum_probs=27.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|..+|..++..|.+|+++.+++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            35999999999999999999999999998854

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=96.48  E-value=0.0052  Score=50.89  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++.|.+|.|+++.+
T Consensus         6 DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          6 DVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            45999999999999999999999999999866

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.48  E-value=0.0048  Score=51.24  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|..|+-+|..+++.|.+|.|+|+.+.
T Consensus         8 DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~   40 (557)
T PRK12844          8 DVVVVGSGGGGMCAALAAADSGLEPLIVEKQDK   40 (557)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            359999999999999999999999999998644

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.47  E-value=0.0049  Score=51.53  Aligned_cols=31  Identities=19%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus         5 DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~   35 (589)
T PRK08641          5 KVIVVGGGLAGLMATIKAAEAGVHVDLFSLV   35 (589)
T ss_pred             cEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence            4699999999999999999999999999963

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.46  E-value=0.0049  Score=51.92  Aligned_cols=31  Identities=19%  Similarity=0.317  Sum_probs=28.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus        10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~   40 (626)
T PRK07803         10 DVVVIGAGGAGLRAAIEARERGLRVAVVCKS   40 (626)
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence            4599999999999999999999999999884

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.45  E-value=0.0053  Score=51.08  Aligned_cols=31  Identities=29%  Similarity=0.333  Sum_probs=28.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus         7 DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~   37 (566)
T PRK06452          7 DAVVIGGGLAGLMSAHEIASAGFKVAVISKV   37 (566)
T ss_pred             cEEEECccHHHHHHHHHHHHCCCcEEEEEcc
Confidence            4599999999999999999999999999975

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.44  E-value=0.0065  Score=51.50  Aligned_cols=32  Identities=16%  Similarity=0.113  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++.|.+|.|+++..
T Consensus         7 DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~   38 (657)
T PRK08626          7 DALVIGAGLAGLRVAIAAAQRGLDTIVLSLVP   38 (657)
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            45999999999999999999999999999743

>TIGR00136 gidA glucose-inhibited division protein A

Probab=96.42  E-value=0.0047  Score=51.73  Aligned_cols=38  Identities=24%  Similarity=0.176  Sum_probs=32.1

Q ss_pred             cccCC-CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231         107 YTSTN-ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       107 ~~~t~-~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      +++|. +||+|++|++.+..   ....|+++|.+|+.|+.+.
T Consensus       351 ~le~k~~~gLf~AGqi~Gt~---Gy~eAaa~Gl~Ag~naa~~  389 (617)
T TIGR00136       351 TLETKLIQGLFFAGQINGTT---GYEEAAAQGLMAGINAALK  389 (617)
T ss_pred             hheeCCCCCeEEccccCCcc---hHHHHHHHHHHHHHHHHHH
Confidence            37776 89999999998865   3569999999999999875

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.42  E-value=0.025  Score=38.22  Aligned_cols=36  Identities=33%  Similarity=0.356  Sum_probs=31.7

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCe-EEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKK-VTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~   47 (148)
                      ...++++    +|+|+|-+|-..+..|...|.+ |+++.|.
T Consensus         9 ~l~~~~v----lviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen    9 DLKGKRV----LVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TGTTSEE----EEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CcCCCEE----EEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            4567888    9999999999999999999876 9999885

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.39  E-value=0.0052  Score=50.19  Aligned_cols=30  Identities=30%  Similarity=0.321  Sum_probs=28.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +++|||+|+.|..+|..+++.|++|++|++
T Consensus         4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~   33 (484)
T TIGR01438         4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDF   33 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            459999999999999999999999999996

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.38  E-value=0.019  Score=44.13  Aligned_cols=31  Identities=26%  Similarity=0.260  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|+|+|.+|.-+|..|++.|.+|+++.|+
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            3599999999999999999999999999985

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.36  E-value=0.0061  Score=51.06  Aligned_cols=31  Identities=19%  Similarity=0.281  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus        14 DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~   44 (598)
T PRK09078         14 DVVVVGAGGAGLRATLGMAEAGLKTACITKV   44 (598)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence            4599999999999999999999999999874

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.36  E-value=0.0063  Score=50.93  Aligned_cols=31  Identities=16%  Similarity=0.349  Sum_probs=28.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus        14 DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~   44 (591)
T PRK07057         14 DVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            4599999999999999999999999999984

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.36  E-value=0.0063  Score=50.56  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|..|+-+|..+++.|.+|+|+++.+.
T Consensus         9 DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~   41 (557)
T PRK07843          9 DVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH   41 (557)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            459999999999999999999999999998654

>PRK07512 L-aspartate oxidase; Provisional

Probab=96.36  E-value=0.0064  Score=50.01  Aligned_cols=49  Identities=18%  Similarity=0.102  Sum_probs=37.5

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCc--ccc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTR--LYF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~--~~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|..     .+|++||+||+|+|+.  ..+     -..+..++-.|++|+.++..+
T Consensus       341 ~GGi~vd~~-----~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~  396 (513)
T PRK07512        341 MGGIAVDAD-----GRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGT  396 (513)
T ss_pred             cCCEEECCC-----CccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            378899998     8999999999999863  111     024667778899999988654

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.35  E-value=0.0076  Score=50.42  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++.|.+|.|+++..
T Consensus         9 DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~   40 (588)
T PRK08958          9 DAVVIGAGGAGMRAALQISQSGQSCALLSKVF   40 (588)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence            45999999999999999999999999999853

>PRK08401 L-aspartate oxidase; Provisional

Probab=96.33  E-value=0.007  Score=49.14  Aligned_cols=48  Identities=19%  Similarity=0.034  Sum_probs=37.0

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~  146 (148)
                      -|.|.+|..     .+|++||+||+|+|+. . .+     -..+..++-.|++|+.++.+
T Consensus       310 ~GGi~vd~~-----~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~  364 (466)
T PRK08401        310 IGGISVDTF-----YRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR  364 (466)
T ss_pred             CCCEEECCC-----CcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence            478899999     8999999999999963 2 11     12456778889999988754

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=96.33  E-value=0.0066  Score=51.09  Aligned_cols=31  Identities=26%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||..|+-+|..+++.|.+|+|+++.
T Consensus        31 DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~   61 (617)
T PTZ00139         31 DAVVVGAGGAGLRAALGLVELGYKTACISKL   61 (617)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence            4599999999999999999999999999874

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=96.31  E-value=0.0063  Score=47.34  Aligned_cols=30  Identities=27%  Similarity=0.545  Sum_probs=28.5

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+|||||..|+-|+..|.+.|+++.+|.+.
T Consensus         5 v~IIGGGLAGltc~l~l~~~Gk~c~iv~~g   34 (421)
T COG3075           5 VAIIGGGLAGLTCGLALQQAGKRCAIVNRG   34 (421)
T ss_pred             EEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence            599999999999999999999999999885

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=96.30  E-value=0.0087  Score=50.55  Aligned_cols=32  Identities=22%  Similarity=0.208  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++.|.+|+|+++..
T Consensus        52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~   83 (635)
T PLN00128         52 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLF   83 (635)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            46999999999999999999999999999853

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.30  E-value=0.0067  Score=51.40  Aligned_cols=49  Identities=12%  Similarity=0.103  Sum_probs=38.0

Q ss_pred             CCeEEecCCCCcccccC-CCCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTST-NISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t-~~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|..     .+| ++||+||+|+|+..  .+     -..+..++-.|++|+.++..+
T Consensus       372 mGGi~vd~~-----~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~  428 (657)
T PRK08626        372 MGGIRTNPT-----GESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADF  428 (657)
T ss_pred             cCCceECCC-----CCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence            377899998     888 59999999999641  11     125678888999999988765

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=96.27  E-value=0.0074  Score=50.24  Aligned_cols=49  Identities=20%  Similarity=0.156  Sum_probs=35.6

Q ss_pred             CCeEEecCCCCccccc---------CCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTS---------TNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~---------t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|..     .+         |++||+||+|+|+. . .+     -..+..|+-.|++|+.++.++
T Consensus       331 ~GGi~id~~-----g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~  395 (565)
T TIGR01816       331 MGGIPTNYH-----GQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEY  395 (565)
T ss_pred             cCCceeCCC-----ceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHh
Confidence            366777766     44         68999999999964 2 11     025677889999999998765

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.26  E-value=0.0067  Score=48.79  Aligned_cols=31  Identities=32%  Similarity=0.458  Sum_probs=28.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|||+|..|+.+|..+++.|.+|+++++.
T Consensus         4 DviIIG~G~aGl~aA~~la~~g~~v~vi~~~   34 (422)
T PRK05329          4 DVLVIGGGLAGLTAALAAAEAGKRVALVAKG   34 (422)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence            4599999999999999999999999999874

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.26  E-value=0.0067  Score=50.93  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..+++.  |.+|.|+++.
T Consensus        13 DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~   45 (608)
T PRK06854         13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA   45 (608)
T ss_pred             CEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            459999999999999999998  9999999974

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.26  E-value=0.0073  Score=50.36  Aligned_cols=31  Identities=13%  Similarity=0.261  Sum_probs=28.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC---CeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA---KKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g---~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..+++.|   .+|+|+++.
T Consensus         7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~   40 (577)
T PRK06069          7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT   40 (577)
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence            4599999999999999999998   799999974

>KOG0685|consensus

Probab=96.26  E-value=0.0092  Score=48.26  Aligned_cols=36  Identities=17%  Similarity=0.216  Sum_probs=30.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-CCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~   52 (148)
                      +|+|||+|.+|+.+|..|.+. ..+|+++|-.+++.+
T Consensus        23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG   59 (498)
T KOG0685|consen   23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG   59 (498)
T ss_pred             eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence            349999999999999999965 578999998887754

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.24  E-value=0.0074  Score=50.99  Aligned_cols=31  Identities=19%  Similarity=0.208  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..+++.|.+|+|++..
T Consensus        37 DVlVVG~G~AGl~AAi~Aae~G~~VilieK~   67 (640)
T PRK07573         37 DVIVVGTGLAGASAAATLGELGYNVKVFCYQ   67 (640)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCcEEEEecC
Confidence            4699999999999999999999999999863

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=96.23  E-value=0.0054  Score=48.03  Aligned_cols=37  Identities=30%  Similarity=0.361  Sum_probs=31.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE   53 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~   53 (148)
                      .+|+|||+|.+|+.+|..|++. .+|||+|-..++.+.
T Consensus         9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh   45 (447)
T COG2907           9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH   45 (447)
T ss_pred             cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence            3569999999999999999986 589999988777654

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.20  E-value=0.0052  Score=47.82  Aligned_cols=31  Identities=26%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |-|||||..|.|+|+.+++.|.+|.|.++++
T Consensus         6 i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp   36 (439)
T COG1206           6 INVIGAGLAGSEAAWQIAKRGVPVILYEMRP   36 (439)
T ss_pred             eEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence            3899999999999999999999999999864

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.17  E-value=0.0097  Score=48.30  Aligned_cols=34  Identities=29%  Similarity=0.434  Sum_probs=30.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +++|||+|+.|.-+|..+++.|.+|.++++...+
T Consensus         6 DvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~l   39 (454)
T COG1249           6 DVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL   39 (454)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCc
Confidence            4599999999999999999999999999997544

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.16  E-value=0.0088  Score=49.87  Aligned_cols=48  Identities=17%  Similarity=0.194  Sum_probs=35.2

Q ss_pred             CeEEecCCCCcccccC------CCCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          95 GYIKTKLNKKTGYTST------NISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        95 g~i~vd~~~~~~~~~t------~~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |.+.+|..     .+|      ++||+||+|++++.  .+     -..+..|+-.|++|+.++..+
T Consensus       352 GGi~vd~~-----~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~  412 (575)
T PRK05945        352 GGIPVNTD-----GRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEY  412 (575)
T ss_pred             CCeeECCC-----ceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            55677766     554      79999999999642  10     125678889999999998765

>TIGR00551 nadB L-aspartate oxidase

Probab=96.16  E-value=0.0096  Score=48.60  Aligned_cols=31  Identities=26%  Similarity=0.413  Sum_probs=28.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|.+|+-+|..+++.|. |+|+++.+
T Consensus         4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~   34 (488)
T TIGR00551         4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAP   34 (488)
T ss_pred             cEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence            46999999999999999999997 99999863

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.16  E-value=0.0088  Score=49.96  Aligned_cols=48  Identities=23%  Similarity=0.241  Sum_probs=35.6

Q ss_pred             CeEEecCCCCccccc------CCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          95 GYIKTKLNKKTGYTS------TNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        95 g~i~vd~~~~~~~~~------t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |.+.+|..     .+      |++||+||+|+|+. . .+     -..+..|+-.|++|+.++.++
T Consensus       357 GGi~id~~-----~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~  417 (583)
T PRK08205        357 GGIPTTVD-----GEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEY  417 (583)
T ss_pred             CCeeECCC-----ceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHH
Confidence            66777766     55      68999999999964 2 11     125677888999999988765

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.16  E-value=0.0082  Score=45.64  Aligned_cols=33  Identities=18%  Similarity=0.109  Sum_probs=29.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|+|||+|..|..+|..|++.|.+|+++.+.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            456999999999999999999999999998754

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.14  E-value=0.0094  Score=46.27  Aligned_cols=33  Identities=12%  Similarity=-0.080  Sum_probs=30.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|+|||+|..|..+|..++..|.+|+++.+.+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            455999999999999999999999999998864

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.14  E-value=0.01  Score=47.75  Aligned_cols=48  Identities=19%  Similarity=0.043  Sum_probs=37.3

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~  146 (148)
                      -|.|.+|..     .+|++||+||+|.++. . .+     -..+..++--|++||.+|..
T Consensus       331 ~GGi~vd~~-----~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~  385 (433)
T PRK06175        331 MGGIKVDLN-----SKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINS  385 (433)
T ss_pred             cCCEEECCC-----ccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence            377889988     8899999999999963 2 10     12467788999999998865

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.14  E-value=0.0073  Score=45.89  Aligned_cols=33  Identities=18%  Similarity=0.117  Sum_probs=30.1

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|+|||+|..|..+|..|++.|.+|+++.+.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            567999999999999999999999999998754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.11  E-value=0.0075  Score=50.61  Aligned_cols=31  Identities=23%  Similarity=0.233  Sum_probs=28.7

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|||+|..|+-+|..+++.|.+|+|+++..
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            3899999999999999999999999999864

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.10  E-value=0.022  Score=40.73  Aligned_cols=31  Identities=23%  Similarity=0.183  Sum_probs=25.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|+|-|.+|+-+|..|++.|.+|+.++..
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~   32 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDID   32 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence            4699999999999999999999999999864

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PLN02815 L-aspartate oxidase

Probab=96.10  E-value=0.0096  Score=49.90  Aligned_cols=49  Identities=20%  Similarity=0.072  Sum_probs=37.3

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|..     .+|++||+||+|+|+. . .+     -..+..++-.|++|+..+..+
T Consensus       377 ~GGi~vD~~-----~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~  432 (594)
T PLN02815        377 CGGVRTGLQ-----GETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH  432 (594)
T ss_pred             CCCeeECCC-----CceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            477889998     8999999999999964 2 11     125677788899998887543

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.10  E-value=0.011  Score=49.26  Aligned_cols=32  Identities=19%  Similarity=0.382  Sum_probs=28.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~   48 (148)
                      +|+|||||..|+-+|..+++.+  .+|+|+++..
T Consensus         5 DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~   38 (575)
T PRK05945          5 DVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH   38 (575)
T ss_pred             cEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence            4599999999999999999874  7999999853

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.09  E-value=0.0096  Score=43.86  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=30.4

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      .++++|    +|||||.+|..=+..|.+.|.+||+|..
T Consensus        23 ~~~~~V----LVVGGG~VA~RK~~~Ll~~gA~VtVVap   56 (223)
T PRK05562         23 SNKIKV----LIIGGGKAAFIKGKTFLKKGCYVYILSK   56 (223)
T ss_pred             CCCCEE----EEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            347778    9999999999999999999999999974

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.08  E-value=0.0086  Score=45.66  Aligned_cols=33  Identities=18%  Similarity=0.220  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|.|||+|..|..+|..++..|.+|+++++.++
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            459999999999999999999999999998643

>PRK08275 putative oxidoreductase; Provisional

Probab=96.05  E-value=0.0099  Score=49.32  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=28.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++.  |.+|+|+++..
T Consensus        11 DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~   44 (554)
T PRK08275         11 DILVIGGGTAGPMAAIKAKERNPALRVLLLEKAN   44 (554)
T ss_pred             CEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            459999999999999999986  68999999753

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.04  E-value=0.0095  Score=50.50  Aligned_cols=31  Identities=19%  Similarity=0.194  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|+.|..+|..+++.|.+|.+|++.
T Consensus       118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4599999999999999999999999999964

>PLN02815 L-aspartate oxidase

Probab=96.03  E-value=0.013  Score=49.10  Aligned_cols=31  Identities=29%  Similarity=0.372  Sum_probs=28.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++.| +|.|+++..
T Consensus        31 DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~   61 (594)
T PLN02815         31 DFLVIGSGIAGLRYALEVAEYG-TVAIITKDE   61 (594)
T ss_pred             CEEEECccHHHHHHHHHHhhCC-CEEEEECCC
Confidence            4699999999999999999999 899998754

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.03  E-value=0.011  Score=49.22  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||+| .|+.+|...++.|.+|.|+|+.+.+
T Consensus        18 DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~   50 (564)
T PRK12845         18 DLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV   50 (564)
T ss_pred             CEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence            56999999 7999999999999999999986554

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.01  E-value=0.014  Score=46.97  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=27.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|..|+-+|..+. .|.+|+|+++.+.
T Consensus         6 DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~   37 (433)
T PRK06175          6 DVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL   37 (433)
T ss_pred             cEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence            4599999999999999975 6999999998543

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=96.00  E-value=0.013  Score=48.93  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|..|+-+|..+++.|.+|+|+++.+.
T Consensus        14 dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~   46 (581)
T PRK06134         14 DVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPV   46 (581)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            459999999999999999999999999998543

>TIGR02462 pyranose_ox pyranose oxidase

Probab=95.98  E-value=0.013  Score=48.58  Aligned_cols=34  Identities=15%  Similarity=0.078  Sum_probs=30.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||+|++|+-+|..|++.|.+|.+|+++...
T Consensus         2 dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~   35 (544)
T TIGR02462         2 DVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAAD   35 (544)
T ss_pred             cEEEECCchHHHHHHHHHHHCCCeEEEEeccCcc
Confidence            4599999999999999999999999999997554

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=95.97  E-value=0.012  Score=49.59  Aligned_cols=31  Identities=19%  Similarity=0.275  Sum_probs=27.8

Q ss_pred             eEEEEcCchHHHHHHHHHh----hcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLS----NIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~----~~g~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..++    +.|.+|+|+++.
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~   35 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKA   35 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEcc
Confidence            3699999999999999998    679999999873

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.96  E-value=0.012  Score=44.61  Aligned_cols=31  Identities=23%  Similarity=0.280  Sum_probs=28.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            3599999999999999999999999999984

>PRK02106 choline dehydrogenase; Validated

Probab=95.93  E-value=0.011  Score=49.04  Aligned_cols=33  Identities=24%  Similarity=0.162  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhh-cCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN-IAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~   49 (148)
                      +++|||+|..|+-+|..|++ .|.+|.|+|+.+.
T Consensus         7 D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          7 DYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            34999999999999999999 7999999999853

>KOG1276|consensus

Probab=95.91  E-value=0.012  Score=47.21  Aligned_cols=38  Identities=29%  Similarity=0.475  Sum_probs=30.6

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEE--EEEeCCCC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVT--LIHRNEKL   50 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vt--lv~~~~~~   50 (148)
                      ..+.++    +|+|||.+|+-+|.+|++...+++  |+|.+++.
T Consensus         9 ~~~~~v----aVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv   48 (491)
T KOG1276|consen    9 VSGMTV----AVVGGGISGLCAAYYLARLGPDVTITLFEASPRV   48 (491)
T ss_pred             eecceE----EEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence            346666    999999999999999999977664  57876654

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.90  E-value=0.012  Score=43.34  Aligned_cols=32  Identities=34%  Similarity=0.379  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +++|+|+|..|...|..|++.|..|+++++.+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            45999999999999999999999999998853

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.88  E-value=0.014  Score=48.84  Aligned_cols=38  Identities=18%  Similarity=0.046  Sum_probs=28.9

Q ss_pred             CCCCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231         110 TNISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       110 t~~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |++||+||+|+|++.  .+     -..+..|+-.|++|+.++.++
T Consensus       378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~  422 (588)
T PRK08958        378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQES  422 (588)
T ss_pred             CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence            689999999998642  11     024678889999999988765

>PRK12839 hypothetical protein; Provisional

Probab=95.88  E-value=0.015  Score=48.50  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=30.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||+|..|+-+|..+++.|.+|+++++.+.+
T Consensus        10 dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~   43 (572)
T PRK12839         10 DVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC   43 (572)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4599999999999999999999999999986543

>PRK07395 L-aspartate oxidase; Provisional

Probab=95.88  E-value=0.013  Score=48.65  Aligned_cols=31  Identities=29%  Similarity=0.402  Sum_probs=27.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++ |.+|+|+++.+
T Consensus        11 DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~   41 (553)
T PRK07395         11 DVLVVGSGAAGLYAALCLPS-HLRVGLITKDT   41 (553)
T ss_pred             CEEEECccHHHHHHHHHhhc-CCCEEEEEccC
Confidence            46999999999999999875 99999999854

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.87  E-value=0.027  Score=42.99  Aligned_cols=39  Identities=23%  Similarity=0.164  Sum_probs=34.8

Q ss_pred             hhhhcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++...|+++    +|||.|. +|.-+|..|.+.+..||+++++.
T Consensus       153 ~i~l~Gk~v----vVIGrs~~VG~pla~lL~~~gatVtv~~s~t  192 (286)
T PRK14175        153 DIDLEGKNA----VVIGRSHIVGQPVSKLLLQKNASVTILHSRS  192 (286)
T ss_pred             CCCCCCCEE----EEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence            456789999    9999988 99999999999999999999753

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.87  E-value=0.013  Score=44.94  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|.|||+|..|..+|..|++.|.+|+++.+.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            46999999999999999999999999999864

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=95.86  E-value=0.015  Score=48.46  Aligned_cols=32  Identities=34%  Similarity=0.451  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+.+|..+++.|.+|+|+++.+
T Consensus        18 dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~   49 (578)
T PRK12843         18 DVIVIGAGAAGMSAALFAAIAGLKVLLVERTE   49 (578)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            35999999999999999999999999999754

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.86  E-value=0.013  Score=49.13  Aligned_cols=39  Identities=15%  Similarity=0.058  Sum_probs=29.5

Q ss_pred             cCCCCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231         109 STNISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       109 ~t~~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      .|++||+||+|+|+..  .+     -..+..|+-.|++|+.++..+
T Consensus       382 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~  427 (598)
T PRK09078        382 DAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEV  427 (598)
T ss_pred             CCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHh
Confidence            3689999999999642  11     125678889999999988765

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.85  E-value=0.013  Score=44.65  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|+|||+|..|..+|..|+..|.+|+++++.+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            456999999999999999999999999998754

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.84  E-value=0.018  Score=44.26  Aligned_cols=32  Identities=19%  Similarity=0.220  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|.+|.-+|..|++.|.+|+++.|+.
T Consensus         7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            35999999999999999999999999999853

>PRK07395 L-aspartate oxidase; Provisional

Probab=95.83  E-value=0.014  Score=48.60  Aligned_cols=46  Identities=22%  Similarity=0.126  Sum_probs=35.0

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCc--ccc-----chhHHHHHHHHHHHHHHH
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTR--LYF-----IDKQLLALGSGCMAALDA  144 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~--~~~-----~~~~~~A~~~G~~aA~~i  144 (148)
                      -|.|.+|..     .+|++||+||+|+|+.  ..+     -..+..++-.|++|+.++
T Consensus       347 ~GGi~vd~~-----~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~  399 (553)
T PRK07395        347 MGGVVTDLN-----NQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLE  399 (553)
T ss_pred             CCCeeECCC-----CcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            378899998     8999999999999863  111     024567777788888877

>PLN02976 amine oxidase

Probab=95.82  E-value=0.015  Score=53.06  Aligned_cols=36  Identities=19%  Similarity=0.239  Sum_probs=32.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +|+|||+|..|+.+|..|.+.|.+|+++++++.+.+
T Consensus       695 dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG  730 (1713)
T PLN02976        695 KIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG  730 (1713)
T ss_pred             cEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence            349999999999999999999999999999776644

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.81  E-value=0.068  Score=34.62  Aligned_cols=46  Identities=24%  Similarity=0.276  Sum_probs=34.5

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEc
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKL   73 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~   73 (148)
                      ++|+|.|..|.+++..|.+.+.+|+++++.      +...+.+.    ..++.++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d------~~~~~~~~----~~~~~~i~   46 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD------PERVEELR----EEGVEVIY   46 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESS------HHHHHHHH----HTTSEEEE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECC------cHHHHHHH----hccccccc
Confidence            489999999999999999977799999874      34455555    35666554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.78  E-value=0.012  Score=49.07  Aligned_cols=38  Identities=18%  Similarity=0.033  Sum_probs=28.5

Q ss_pred             CCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231         110 TNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       110 t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |++||+||+|+|+. . .+     -..+..|+-.|++|+.++..+
T Consensus       360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~  404 (570)
T PRK05675        360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKA  404 (570)
T ss_pred             CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHH
Confidence            47999999999864 2 11     124678889999999988765

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=95.77  E-value=0.016  Score=52.15  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=30.7

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      -+|+|||+|..|+-+|...++.|.+|+|+++.+.
T Consensus       410 ~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~  443 (1167)
T PTZ00306        410 ARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK  443 (1167)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence            4569999999999999999999999999998644

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.76  E-value=0.014  Score=44.35  Aligned_cols=33  Identities=21%  Similarity=0.077  Sum_probs=29.6

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|+|||+|..|..+|..|+..|.+|+++.+.+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            345999999999999999999999999998754

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.75  E-value=0.014  Score=48.25  Aligned_cols=30  Identities=20%  Similarity=0.343  Sum_probs=27.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|.+|+-+|..+ +.|.+|+|+++.
T Consensus         9 DVlVVG~G~AGl~AAi~A-~~G~~VilleK~   38 (543)
T PRK06263          9 DVLIIGSGGAGARAAIEA-ERGKNVVIVSKG   38 (543)
T ss_pred             CEEEECccHHHHHHHHHH-hcCCCEEEEEcc
Confidence            469999999999999999 889999999984

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.75  E-value=0.017  Score=44.00  Aligned_cols=30  Identities=23%  Similarity=0.251  Sum_probs=28.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|+|+|.+|.-+|..|++.|.+|+++.|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            459999999999999999999999999987

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=95.75  E-value=0.018  Score=48.17  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++.  +.+|+|+++..
T Consensus         6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~   39 (582)
T PRK09231          6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY   39 (582)
T ss_pred             eEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence            469999999999999999987  47999999853

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=95.73  E-value=0.016  Score=48.92  Aligned_cols=38  Identities=11%  Similarity=-0.039  Sum_probs=29.0

Q ss_pred             CCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231         110 TNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       110 t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |++||+||+|+|++ . .+     -..+..|+-.|++|+.++..+
T Consensus       421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~  465 (635)
T PLN00128        421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEI  465 (635)
T ss_pred             CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence            78999999999963 2 11     025788899999999988654

>PRK08071 L-aspartate oxidase; Provisional

Probab=95.72  E-value=0.017  Score=47.52  Aligned_cols=31  Identities=26%  Similarity=0.289  Sum_probs=27.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++ |.+|+|+++.+
T Consensus         5 DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~   35 (510)
T PRK08071          5 DVIIIGSGIAALTVAKELCH-EYNVIIITKKT   35 (510)
T ss_pred             CEEEECccHHHHHHHHHhhc-CCCEEEEeccC
Confidence            56999999999999999987 89999999743

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=95.70  E-value=0.019  Score=47.96  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=28.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++.  |.+|+|+++..
T Consensus         5 DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~   38 (580)
T TIGR01176         5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKVY   38 (580)
T ss_pred             eEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence            469999999999999999986  57999999853

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.68  E-value=0.019  Score=48.14  Aligned_cols=48  Identities=17%  Similarity=0.119  Sum_probs=36.2

Q ss_pred             CeEEecCCCCcccccC---------CCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          95 GYIKTKLNKKTGYTST---------NISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        95 g~i~vd~~~~~~~~~t---------~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |.+.+|..     .+|         ++||+||+|+|+. . .+     -..+..|+-.|++|+.++..+
T Consensus       362 GGi~vd~~-----g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~  425 (591)
T PRK07057        362 GGIPTNIH-----GQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH  425 (591)
T ss_pred             CCeeECCC-----CcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            67788877     665         7999999999864 2 10     025788899999999988754

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=95.68  E-value=0.26  Score=39.71  Aligned_cols=62  Identities=11%  Similarity=-0.068  Sum_probs=37.0

Q ss_pred             EEEcCchHHHHHHHHHh-hcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231          19 DVIGGGNTAVEEALYLS-NIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKII   81 (148)
Q Consensus        19 ~ViGgG~~g~e~A~~l~-~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~   81 (148)
                      +|+|-++.. +.-..|. ..|+.|.-+.-.+.-.....+.+.+.+.+++.|+.++.+++|.++.
T Consensus       228 AvlG~~~~~-~~~~~L~~~~g~~v~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~  290 (419)
T TIGR03378       228 ACFGLGDGL-ELLRELEQATGLTLCELPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAE  290 (419)
T ss_pred             CeeCCCChH-HHHHHHHHHHCCCEEeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEE
Confidence            467766632 2223343 3477776553322212235566777788888999999887776643

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.65  E-value=0.049  Score=38.39  Aligned_cols=35  Identities=31%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             hcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..|+++    +|||+|. +|.-+|..|.+.|.+|+++.|.
T Consensus        42 l~gk~v----lViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          42 LAGKKV----VVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCCEE----EEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            567888    9999997 5888999999999999999885

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>KOG1800|consensus

Probab=95.65  E-value=0.064  Score=42.62  Aligned_cols=61  Identities=11%  Similarity=0.075  Sum_probs=42.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCc---------hH---HHHHHHHhHHhcCCcEEEcCceE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRC---------EK---ILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~---------~~---~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      +|+|||+|++|+-.|..|.+.  +.+|+++|+.+..-+         ++   ...+...+.+++.+..+.-+.+|
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v   96 (468)
T KOG1800|consen   22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV   96 (468)
T ss_pred             eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee
Confidence            459999999999999888874  689999998654311         22   22333444445777888777665

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.62  E-value=0.019  Score=41.98  Aligned_cols=37  Identities=30%  Similarity=0.349  Sum_probs=32.9

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +...|++|    +|||||.+|..=|..|.+.|.+|+++...
T Consensus         8 ~~l~~k~V----lvvGgG~va~rKa~~ll~~ga~v~Vvs~~   44 (210)
T COG1648           8 LDLEGKKV----LVVGGGSVALRKARLLLKAGADVTVVSPE   44 (210)
T ss_pred             EEcCCCEE----EEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence            34678888    99999999999999999999999999753

>KOG2852|consensus

Probab=95.61  E-value=0.0057  Score=46.77  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=28.3

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcC------CeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIA------KKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g------~~Vtlv~~~   47 (148)
                      |+|+|+|||.+|+-+|.+|++.+      .++|++|.+
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~   48 (380)
T KOG2852|consen   11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK   48 (380)
T ss_pred             eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence            44599999999999999999987      789999974

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.60  E-value=0.025  Score=39.99  Aligned_cols=41  Identities=27%  Similarity=0.169  Sum_probs=33.8

Q ss_pred             hhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           5 FGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      .+....|+++    .|+|-|.+|-++|..|..+|.+|+.+.+..+
T Consensus        30 ~~~~l~g~tv----gIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~   70 (178)
T PF02826_consen   30 PGRELRGKTV----GIIGYGRIGRAVARRLKAFGMRVIGYDRSPK   70 (178)
T ss_dssp             TBS-STTSEE----EEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred             CccccCCCEE----EEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence            3445668888    9999999999999999999999999988643

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=95.59  E-value=0.021  Score=48.04  Aligned_cols=48  Identities=19%  Similarity=0.059  Sum_probs=35.2

Q ss_pred             CeEEecCCCCccccc----------CCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          95 GYIKTKLNKKTGYTS----------TNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        95 g~i~vd~~~~~~~~~----------t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      |.+.+|..     .+          |++||+||+|+|++ . .+     -..+..++-.|++|+.++.++
T Consensus       380 GGi~vd~~-----~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~  444 (617)
T PTZ00139        380 GGIPTNWK-----TQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEI  444 (617)
T ss_pred             CCeEEcCC-----ceeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            66777766     44          37999999999863 2 11     025678889999999988765

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.56  E-value=0.019  Score=50.31  Aligned_cols=31  Identities=29%  Similarity=0.367  Sum_probs=28.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||..|+-+|..+++.|.+|+|+++.
T Consensus        15 DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~   45 (897)
T PRK13800         15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKA   45 (897)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4599999999999999999999999999873

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=95.54  E-value=0.024  Score=47.29  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=30.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||..|+-+|..+++.|.+|.|+++....
T Consensus         8 DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~   41 (562)
T COG1053           8 DVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK   41 (562)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence            3599999999999999999999999999985443

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.54  E-value=0.02  Score=44.03  Aligned_cols=40  Identities=23%  Similarity=0.028  Sum_probs=35.8

Q ss_pred             hhhhhcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           5 FGILALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++....||++    +|||.| ..|.-+|..|.+.|..||++++..
T Consensus       153 ~~i~l~Gk~V----~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t  193 (301)
T PRK14194        153 TCGDLTGKHA----VVIGRSNIVGKPMAALLLQAHCSVTVVHSRS  193 (301)
T ss_pred             hCCCCCCCEE----EEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence            3667889999    999996 999999999999999999998764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.52  E-value=0.019  Score=43.91  Aligned_cols=39  Identities=23%  Similarity=0.171  Sum_probs=34.2

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++...|+++    +|+|.|.+|..+|..|..+|.+|+++.|..
T Consensus       146 ~~~l~gk~v----~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       146 DFTIHGSNV----MVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCCCCCCEE----EEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            345567888    999999999999999999999999998864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.49  E-value=0.025  Score=43.12  Aligned_cols=39  Identities=26%  Similarity=0.252  Sum_probs=34.7

Q ss_pred             hhhhhcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeC
Q psy5231           5 FGILALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++....||++    +|+|.|. +|--+|..|.+.|..||+++++
T Consensus       153 ~~i~l~Gk~v----vViG~gg~vGkpia~~L~~~gatVtv~~~~  192 (283)
T PRK14192        153 YNIELAGKHA----VVVGRSAILGKPMAMMLLNANATVTICHSR  192 (283)
T ss_pred             cCCCCCCCEE----EEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4667889999    9999997 9999999999999999999873

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.47  E-value=0.027  Score=40.17  Aligned_cols=38  Identities=29%  Similarity=0.382  Sum_probs=32.4

Q ss_pred             hhhhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |....++++    +|+|| |.+|..+|..|.+.|.+|+++.|.
T Consensus        23 ~~~l~~~~v----lVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          23 GKDLKGKTA----VVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CcCCCCCEE----EEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            344567777    99997 999999999999999999999875

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.45  E-value=0.025  Score=45.83  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=28.2

Q ss_pred             ceEEEEcCchHHHHHHHHHhhc--C-CeEEEEEeCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNI--A-KKVTLIHRNEKL   50 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~--g-~~Vtlv~~~~~~   50 (148)
                      .+|+|||||++|+.+|..|.+.  . ..+++++..+.+
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            3569999999999999999875  2 239999986654

>KOG2311|consensus

Probab=95.40  E-value=0.017  Score=47.11  Aligned_cols=30  Identities=27%  Similarity=0.404  Sum_probs=27.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|||||-.|||+|...++.|.+++|++.
T Consensus        30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~   59 (679)
T KOG2311|consen   30 DVVVIGGGHAGCEAAAAAARLGARTLLLTH   59 (679)
T ss_pred             cEEEECCCccchHHHHHHHhcCCceEEeec
Confidence            459999999999999999999999999976

>TIGR01810 betA choline dehydrogenase

Probab=95.40  E-value=0.022  Score=46.97  Aligned_cols=32  Identities=25%  Similarity=0.254  Sum_probs=29.2

Q ss_pred             EEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEK   49 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~   49 (148)
                      ++|||||..|+-+|..|++.+ .+|.|+|..+.
T Consensus         2 ~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         2 YIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             EEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            599999999999999999998 69999999753

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.39  E-value=0.23  Score=39.76  Aligned_cols=32  Identities=34%  Similarity=0.402  Sum_probs=25.6

Q ss_pred             EEEEcCchHHHHHHHHHhhc----CCeEEEEEeCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNI----AKKVTLIHRNEK   49 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~   49 (148)
                      |+|||||.+|.|+-..|...    ..++.++.|+..
T Consensus       190 V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~g  225 (436)
T COG3486         190 VTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSG  225 (436)
T ss_pred             EEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCC
Confidence            39999999999998888653    445888999654

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=95.38  E-value=0.027  Score=45.30  Aligned_cols=31  Identities=32%  Similarity=0.418  Sum_probs=28.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|||+|.+|+-+|..+++.|.+|.++++.
T Consensus         2 Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~   32 (419)
T TIGR03378         2 DVIIIGGGLAGLSCALRLAEAGKKCAIIAAG   32 (419)
T ss_pred             CEEEECchHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4599999999999999999999999999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.32  E-value=0.029  Score=46.87  Aligned_cols=30  Identities=10%  Similarity=0.238  Sum_probs=26.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..+++. .+|+|+++.
T Consensus         7 DVlVIG~G~AGl~AAl~aa~~-~~VilleK~   36 (583)
T PRK08205          7 DVVIVGAGGAGMRAAIEAGPR-ARTAVLTKL   36 (583)
T ss_pred             cEEEECccHHHHHHHHHHHhC-CCEEEEeCC
Confidence            459999999999999999986 899999974

>PRK09077 L-aspartate oxidase; Provisional

Probab=95.27  E-value=0.03  Score=46.30  Aligned_cols=31  Identities=23%  Similarity=0.399  Sum_probs=27.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++. .+|+|+++..
T Consensus        10 DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~   40 (536)
T PRK09077         10 DVLIIGSGAAGLSLALRLAEH-RRVAVLSKGP   40 (536)
T ss_pred             CEEEECchHHHHHHHHHHHHC-CCEEEEeccC
Confidence            469999999999999999886 7999999853

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.27  E-value=0.084  Score=42.80  Aligned_cols=57  Identities=21%  Similarity=0.230  Sum_probs=41.0

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLK   74 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~   74 (148)
                      ..++++    .|+|.|.+|+.+|..|.+.|.+|++.++.+... .+...+++.    ..|+.++.+
T Consensus        12 ~~~~~i----~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~-~~~~~~~l~----~~gi~~~~~   68 (458)
T PRK01710         12 IKNKKV----AVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE-LGEVSNELK----ELGVKLVLG   68 (458)
T ss_pred             hcCCeE----EEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc-chHHHHHHH----hCCCEEEeC
Confidence            346777    999999999999999999999999988754321 122223333    568877654

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.26  E-value=0.045  Score=38.34  Aligned_cols=32  Identities=16%  Similarity=0.148  Sum_probs=27.4

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+++|+|+|.+|..++..+..+|.+|+.++..
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~   52 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER   52 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence            34599999999999999999999999999763

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.23  E-value=0.033  Score=44.74  Aligned_cols=38  Identities=18%  Similarity=0.140  Sum_probs=32.9

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +....|++|    +|+|.|++|.-+|..+..+|.+|+++++.
T Consensus       197 ~~~l~GktV----vViG~G~IG~~va~~ak~~Ga~ViV~d~d  234 (413)
T cd00401         197 DVMIAGKVA----VVAGYGDVGKGCAQSLRGQGARVIVTEVD  234 (413)
T ss_pred             CCCCCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            334568888    99999999999999999999999998764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.20  E-value=0.039  Score=42.05  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=29.5

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|.|||+|..|..+|..|+..|.+|+++++++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            345999999999999999999999999998754

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=95.18  E-value=0.037  Score=47.44  Aligned_cols=34  Identities=21%  Similarity=0.127  Sum_probs=31.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ++|+|||+|..|..+|..++..|.+|++++.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5679999999999999999999999999998644

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.18  E-value=0.028  Score=42.59  Aligned_cols=32  Identities=19%  Similarity=0.190  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|..+|..++..|.+|+++++.+
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            45999999999999999999999999998653

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.16  E-value=0.037  Score=39.99  Aligned_cols=38  Identities=24%  Similarity=0.043  Sum_probs=32.7

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +....|+++    +|+|.|.+|..+|..|.+.|.+|++..+.
T Consensus        23 ~~~l~gk~v----~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          23 TDSLEGKTV----AVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCCCCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            455677888    99999999999999999999999977653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.16  E-value=0.041  Score=42.52  Aligned_cols=30  Identities=30%  Similarity=0.388  Sum_probs=28.3

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |.|||+|..|.-+|..|++.|.+|+++.|+
T Consensus         3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~   32 (326)
T PRK14620          3 ISILGAGSFGTAIAIALSSKKISVNLWGRN   32 (326)
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            599999999999999999999999999884

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.14  E-value=0.033  Score=42.67  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=29.4

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|.|||+|..|..+|..|++.|.+|+++.+.+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            456999999999999999999999999998753

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=95.13  E-value=0.03  Score=45.30  Aligned_cols=49  Identities=12%  Similarity=-0.083  Sum_probs=37.1

Q ss_pred             CCeEEecCCCCcccccC------CCCCeEEecccCcc-c------cchhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTST------NISGVFCRWRCTRL-Y------FIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t------~~~~vya~GD~~~~-~------~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.+.+|+.     .++      .+||+||+|.+++. .      +-..+..++-.|++|+.++..+
T Consensus       399 ~GGl~~d~~-----~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~  460 (466)
T PRK08274        399 YLGLKVDED-----ARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARH  460 (466)
T ss_pred             cccEEECCC-----ceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHH
Confidence            467888887     554      79999999998654 1      0135678889999999998765

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=95.09  E-value=0.032  Score=38.55  Aligned_cols=30  Identities=20%  Similarity=0.333  Sum_probs=25.8

Q ss_pred             EEEcCchHHHHHHHHHhhc-----CCeEEEEEeCC
Q psy5231          19 DVIGGGNTAVEEALYLSNI-----AKKVTLIHRNE   48 (148)
Q Consensus        19 ~ViGgG~~g~e~A~~l~~~-----g~~Vtlv~~~~   48 (148)
                      +|||+|++|+-++..|.+.     ..+|+|+++.+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            5999999999999999877     46899999843

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=95.08  E-value=0.032  Score=39.06  Aligned_cols=38  Identities=26%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +.+..||++    +|+|=|..|--+|..|+.+|.+|++.+..
T Consensus        18 ~~~l~Gk~v----vV~GYG~vG~g~A~~lr~~Ga~V~V~e~D   55 (162)
T PF00670_consen   18 NLMLAGKRV----VVIGYGKVGKGIARALRGLGARVTVTEID   55 (162)
T ss_dssp             -S--TTSEE----EEE--SHHHHHHHHHHHHTT-EEEEE-SS
T ss_pred             ceeeCCCEE----EEeCCCcccHHHHHHHhhCCCEEEEEECC
Confidence            456778998    99999999999999999999999999874

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=95.08  E-value=0.042  Score=47.14  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=31.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ++|+|||+|..|..+|..++..|.+|++++..++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6679999999999999999999999999998643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=95.08  E-value=0.024  Score=46.84  Aligned_cols=30  Identities=37%  Similarity=0.461  Sum_probs=27.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|||||-.|+|+|...+++|.++.|++.
T Consensus         6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~   35 (621)
T COG0445           6 DVIVIGGGHAGVEAALAAARMGAKTLLLTL   35 (621)
T ss_pred             ceEEECCCccchHHHHhhhccCCeEEEEEc
Confidence            359999999999999999999999998875

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=95.05  E-value=0.031  Score=46.39  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=30.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +++|||+|..|+-+|..|+..+.+|.++|+...
T Consensus         9 D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~   41 (542)
T COG2303           9 DYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP   41 (542)
T ss_pred             CEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence            459999999999999999999999999999754

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.94  E-value=0.046  Score=41.73  Aligned_cols=39  Identities=23%  Similarity=0.199  Sum_probs=34.6

Q ss_pred             hhhhhcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           5 FGILALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++....||++    +|||.| .+|.-+|..|.+.|..||+++..
T Consensus       151 ~~i~l~Gk~v----vVvGrs~~VG~Pla~lL~~~gAtVtv~hs~  190 (285)
T PRK14191        151 YHIEIKGKDV----VIIGASNIVGKPLAMLMLNAGASVSVCHIL  190 (285)
T ss_pred             hCCCCCCCEE----EEECCCchhHHHHHHHHHHCCCEEEEEeCC
Confidence            3667889999    999999 99999999999999999998753

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.93  E-value=0.044  Score=42.46  Aligned_cols=31  Identities=29%  Similarity=0.260  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||.|.+|.-+|..|++.|.+|+++.|+
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            4599999999999999999999999999874

>KOG0042|consensus

Probab=94.92  E-value=0.011  Score=48.61  Aligned_cols=32  Identities=28%  Similarity=0.326  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|.-||+..+.+|.+|-|+|+.+
T Consensus        69 DVLIIGGGAtGaGcALDA~TRGLktaLVE~~D  100 (680)
T KOG0042|consen   69 DVLIIGGGATGAGCALDAATRGLKTALVEAGD  100 (680)
T ss_pred             cEEEECCCccCcceeehhhcccceeEEEeccc
Confidence            46999999999999999999999999999865

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.92  E-value=0.037  Score=42.72  Aligned_cols=32  Identities=22%  Similarity=0.268  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|+|+|.+|.-+|..|++.|.+|+++.|++
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            46999999999999999999999999998853

>KOG0404|consensus

Probab=94.92  E-value=0.2  Score=37.28  Aligned_cols=65  Identities=22%  Similarity=0.224  Sum_probs=47.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC-----------------CCCCc------hHHHHHHHHhHHhcCCcEEEc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN-----------------EKLRC------EKILIDRLMQKVNEGKIDIKL   73 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~-----------------~~~~~------~~~~~~~l~~~l~~~~v~i~~   73 (148)
                      +|+|||+|+.+-.+|.++++.-.+-.|++..                 +.+++      .+++.++++++-++.|.++++
T Consensus        10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~t   89 (322)
T KOG0404|consen   10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIIT   89 (322)
T ss_pred             eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeee
Confidence            3499999999999999999887666677641                 11222      357788888877788999986


Q ss_pred             CceEEEEec
Q psy5231          74 KHIVHKIIG   82 (148)
Q Consensus        74 ~~~v~~i~~   82 (148)
                      . +|+++.-
T Consensus        90 E-tVskv~~   97 (322)
T KOG0404|consen   90 E-TVSKVDL   97 (322)
T ss_pred             e-ehhhccc
Confidence            4 4666543

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=94.91  E-value=0.23  Score=31.01  Aligned_cols=48  Identities=19%  Similarity=0.172  Sum_probs=34.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC---CeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA---KKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIK   72 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g---~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~   72 (148)
                      +|.|||+|..|.-++.-|.+.|   .+|+++..+     .++..+++.+   +.++.+.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-----~~~~~~~~~~---~~~~~~~   51 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-----SPEKAAELAK---EYGVQAT   51 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-----SHHHHHHHHH---HCTTEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-----cHHHHHHHHH---hhccccc
Confidence            3589999999999999999999   899977332     2444455544   4555554

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=94.86  E-value=0.04  Score=36.08  Aligned_cols=32  Identities=16%  Similarity=0.120  Sum_probs=28.1

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+|+|+|.|.+++.+...+.++|.++.++...
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~   34 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGIETVAVNSN   34 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEG
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCcceeccCc
Confidence            56799999999999999999999999988764

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=94.86  E-value=0.058  Score=37.63  Aligned_cols=32  Identities=25%  Similarity=0.184  Sum_probs=29.0

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      |+|+|+ |.+|-.++..|.+.+.+|+.+.|++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~   33 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS   33 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence            489997 99999999999999999999999643

...

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.81  E-value=0.04  Score=45.37  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=30.4

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ++|.|||+|..|..+|..++..|.+|++++++++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4569999999999999999999999999988643

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>KOG1335|consensus

Probab=94.78  E-value=0.093  Score=41.84  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=31.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      +++|||+|+-|.-+|...++.|.++..++.+..+.
T Consensus        41 DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG   75 (506)
T KOG1335|consen   41 DVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG   75 (506)
T ss_pred             CEEEECCCCchHHHHHHHHHhcceeEEEeccCccC
Confidence            35999999999999999999999999999876653

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=94.76  E-value=0.13  Score=40.34  Aligned_cols=32  Identities=25%  Similarity=0.236  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--------CeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--------KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--------~~Vtlv~~~~   48 (148)
                      +|+|||+|..|..+|..|+..+        .+|+++.|.+
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~   40 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE   40 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc
Confidence            3599999999999999999988        9999998854

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK07512 L-aspartate oxidase; Provisional

Probab=94.74  E-value=0.039  Score=45.44  Aligned_cols=30  Identities=23%  Similarity=0.399  Sum_probs=26.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..++  +.+|+|+++..
T Consensus        11 DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~   40 (513)
T PRK07512         11 RPVIVGGGLAGLMAALKLA--PRPVVVLSPAP   40 (513)
T ss_pred             CEEEECchHHHHHHHHHhC--cCCEEEEECCC
Confidence            4599999999999999987  56999999854

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=94.69  E-value=0.053  Score=46.68  Aligned_cols=35  Identities=17%  Similarity=0.099  Sum_probs=31.2

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +++|.|||+|..|..+|..++..|.+|++++..++
T Consensus       335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            36679999999999999999999999999987643

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02785 Protein HOTHEAD

Probab=94.63  E-value=0.052  Score=45.54  Aligned_cols=32  Identities=31%  Similarity=0.304  Sum_probs=28.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +++|||||..|+-+|..|++ ..+|.|+|++..
T Consensus        57 D~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         57 DYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             CEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            45999999999999999999 689999999763

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.63  E-value=0.063  Score=36.06  Aligned_cols=30  Identities=30%  Similarity=0.362  Sum_probs=26.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~   46 (148)
                      +|+|+|.|.+|.++|..|+..|. +++++..
T Consensus         4 ~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~   34 (135)
T PF00899_consen    4 RVLIIGAGGVGSEVAKNLARSGVGKITLVDD   34 (135)
T ss_dssp             EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred             EEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence            34999999999999999999986 7888876

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07846 mycothione reductase; Reviewed

Probab=94.62  E-value=0.054  Score=43.84  Aligned_cols=29  Identities=14%  Similarity=0.146  Sum_probs=24.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|||+|+.|..+|..  ..|++|.+|++.
T Consensus         3 D~vVIG~G~~g~~aa~~--~~G~~V~lie~~   31 (451)
T PRK07846          3 DLIIIGTGSGNSILDER--FADKRIAIVEKG   31 (451)
T ss_pred             CEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence            45999999999987755  469999999973

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.60  E-value=0.14  Score=41.15  Aligned_cols=55  Identities=22%  Similarity=0.165  Sum_probs=39.3

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLK   74 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~   74 (148)
                      .||++    +|+|+|-+|+.+|..|++.|.+|++..+....  .....+.+.    ..|+++..+
T Consensus         4 ~~k~v----~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~--~~~~~~~l~----~~g~~~~~~   58 (447)
T PRK02472          4 QNKKV----LVLGLAKSGYAAAKLLHKLGANVTVNDGKPFS--ENPEAQELL----EEGIKVICG   58 (447)
T ss_pred             CCCEE----EEEeeCHHHHHHHHHHHHCCCEEEEEcCCCcc--chhHHHHHH----hcCCEEEeC
Confidence            46777    99999999999999999999999998754321  112223333    467777643

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=94.59  E-value=0.045  Score=43.45  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=32.5

Q ss_pred             ccCCCCCeEEecccCccc----cchhHHHHHHHHHHHHHHHHhhC
Q psy5231         108 TSTNISGVFCRWRCTRLY----FIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       108 ~~t~~~~vya~GD~~~~~----~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +...+||+|.+|.+.+..    ++ +..+|..+|+.|+.+++.+|
T Consensus       332 ~Sk~~pgLYf~GEvLDvdG~~GGY-NLq~AwsSG~~AG~~~~~~~  375 (376)
T TIGR03862       332 MLKARPGVFCAGEMLDWEAPTGGY-LLTACFATGRAAGRGVHSWL  375 (376)
T ss_pred             hcccCCCeEEEEEEEeeccCCCCH-HHHHHHHHHHHHHHHHHHhh
Confidence            544689999999775432    24 78999999999999999886

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=94.58  E-value=0.05  Score=36.97  Aligned_cols=32  Identities=19%  Similarity=0.246  Sum_probs=27.6

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ++|+|+|.++..++..+...|.+|++++.+++
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            48999999999999999999999999987654

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.56  E-value=0.064  Score=43.76  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=34.2

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +....||++    +|+|.|.+|..+|..+..+|.+|+++++.+
T Consensus       249 ~~~LaGKtV----gVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp  287 (476)
T PTZ00075        249 DVMIAGKTV----VVCGYGDVGKGCAQALRGFGARVVVTEIDP  287 (476)
T ss_pred             CCCcCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            345678888    999999999999999999999999987753

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.54  E-value=0.054  Score=41.35  Aligned_cols=39  Identities=28%  Similarity=0.270  Sum_probs=34.5

Q ss_pred             hhhhhcCCcccceEEEEcCchH-HHHHHHHHhhcCCeEEEEEeC
Q psy5231           5 FGILALIKPVIIFTDVIGGGNT-AVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~~-g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++...||++    +|||.|.+ |.-+|..|.+.+..||+.+..
T Consensus       152 ~~i~l~Gk~v----vViGrs~iVGkPla~lL~~~~atVt~~hs~  191 (285)
T PRK14189        152 IGIPLRGAHA----VVIGRSNIVGKPMAMLLLQAGATVTICHSK  191 (285)
T ss_pred             cCCCCCCCEE----EEECCCCccHHHHHHHHHHCCCEEEEecCC
Confidence            4567889999    99999988 999999999999999998754

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.53  E-value=0.041  Score=42.53  Aligned_cols=31  Identities=26%  Similarity=0.355  Sum_probs=28.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|+|||.+|.+.|......|.+||+++++
T Consensus       170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n  200 (371)
T COG0686         170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLN  200 (371)
T ss_pred             cEEEECCccccchHHHHHhccCCeeEEEecC
Confidence            3499999999999999999999999999986

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.51  E-value=0.063  Score=41.25  Aligned_cols=37  Identities=22%  Similarity=-0.004  Sum_probs=33.8

Q ss_pred             hhhhcCCcccceEEEEc-CchHHHHHHHHHhhcCCeEEEEEe
Q psy5231           6 GILALIKPVIIFTDVIG-GGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +....||++    +||| ++..|.-+|..|.+.|..|++++.
T Consensus       153 ~i~~~Gk~V----~viGrs~~mG~PmA~~L~~~g~tVtv~~~  190 (296)
T PRK14188        153 HGDLSGLNA----VVIGRSNLVGKPMAQLLLAANATVTIAHS  190 (296)
T ss_pred             CCCCCCCEE----EEEcCCcchHHHHHHHHHhCCCEEEEECC
Confidence            557889999    9999 999999999999999999999963

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.51  E-value=0.076  Score=40.71  Aligned_cols=31  Identities=29%  Similarity=0.359  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||+|..|..+|..|++.|.+|+++.|.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~   33 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD   33 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            4599999999999999999999999999874

>KOG1336|consensus

Probab=94.50  E-value=0.086  Score=42.76  Aligned_cols=68  Identities=21%  Similarity=0.215  Sum_probs=47.6

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCCch------------HHHHHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLRCE------------KILIDRLMQKVNEGKIDIKLKHIVHKII   81 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~------------~~~~~~l~~~l~~~~v~i~~~~~v~~i~   81 (148)
                      ++++|+|+|+.|.-++..+.+.|  -+.+++.+...++.+            .....+..+-.++.+|++++++.+.++.
T Consensus        75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D  154 (478)
T KOG1336|consen   75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKAD  154 (478)
T ss_pred             ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEee
Confidence            34599999999888888888875  467888865433221            1233334445567999999999998876


Q ss_pred             cC
Q psy5231          82 GN   83 (148)
Q Consensus        82 ~~   83 (148)
                      -.
T Consensus       155 ~~  156 (478)
T KOG1336|consen  155 LA  156 (478)
T ss_pred             cc
Confidence            43

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.50  E-value=0.066  Score=42.93  Aligned_cols=37  Identities=22%  Similarity=0.147  Sum_probs=32.7

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ...|++|    +|+|.|.+|.-+|..+..+|.+|+++++.+
T Consensus       192 ~l~Gk~V----vViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       192 LIAGKTV----VVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CCCcCEE----EEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            4568888    999999999999999999999999987653

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.49  E-value=0.072  Score=38.53  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=29.4

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      ..++|    +|+|.|-.|.++|..|++.|. +++++...
T Consensus        20 ~~~~V----~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATV----AICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcE----EEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45566    999999999999999999998 69998764

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.49  E-value=0.078  Score=40.71  Aligned_cols=31  Identities=19%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |.|||.|..|.-+|..|++.|.+|+++.|+.
T Consensus         7 I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          7 IAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             EEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4999999999999999999999999998854

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.47  E-value=0.075  Score=41.11  Aligned_cols=30  Identities=23%  Similarity=0.271  Sum_probs=28.3

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |.|||+|..|.-+|..|++.|.+|+++.|+
T Consensus         7 I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~   36 (328)
T PRK14618          7 VAVLGAGAWGTALAVLAASKGVPVRLWARR   36 (328)
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            499999999999999999999999999885

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=94.45  E-value=0.093  Score=32.48  Aligned_cols=35  Identities=34%  Similarity=0.318  Sum_probs=30.0

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhc-CCeEEEEEe
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNI-AKKVTLIHR   46 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~   46 (148)
                      ...++++    +|+|.|..|.-++..|.+. +.+|+++.|
T Consensus        20 ~~~~~~v----~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          20 SLKGKTV----VVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCEE----EEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3556777    9999999999999999998 688888877

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR03452 mycothione_red mycothione reductase

Probab=94.45  E-value=0.061  Score=43.51  Aligned_cols=29  Identities=14%  Similarity=0.178  Sum_probs=24.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|||+|+.|..+|..  ..|++|.+|++.
T Consensus         4 D~vvIG~G~~g~~aa~~--~~g~~V~lie~~   32 (452)
T TIGR03452         4 DLIIIGTGSGNSIPDPR--FADKRIAIVEKG   32 (452)
T ss_pred             CEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence            45999999999888644  469999999973

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=94.43  E-value=0.038  Score=44.30  Aligned_cols=29  Identities=28%  Similarity=0.378  Sum_probs=27.3

Q ss_pred             EEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          20 VIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        20 ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |||+|..|+-+|..+++.|.+|+|+|+.+
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~   29 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAP   29 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            79999999999999999999999999864

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.43  E-value=0.066  Score=43.18  Aligned_cols=38  Identities=24%  Similarity=0.216  Sum_probs=33.4

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ....|+++    +|+|.|.+|..+|..+..+|.+|+++++.+
T Consensus       208 ~~l~Gk~V----lViG~G~IG~~vA~~lr~~Ga~ViV~d~dp  245 (425)
T PRK05476        208 VLIAGKVV----VVAGYGDVGKGCAQRLRGLGARVIVTEVDP  245 (425)
T ss_pred             CCCCCCEE----EEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            34578888    999999999999999999999999988753

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.41  E-value=0.17  Score=40.61  Aligned_cols=31  Identities=26%  Similarity=0.288  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~   32 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTD   32 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4599999999999999999999999999874

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.39  E-value=0.068  Score=43.87  Aligned_cols=32  Identities=19%  Similarity=0.122  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|.|||+|..|..+|..|+..|.+|+++.+.+
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            45999999999999999999999999998753

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.37  E-value=0.058  Score=44.46  Aligned_cols=34  Identities=21%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ++|.|||+|..|..+|..++..|.+|+++++.++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4569999999999999999999999999988643

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=94.36  E-value=0.061  Score=41.82  Aligned_cols=32  Identities=28%  Similarity=0.309  Sum_probs=29.3

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+|+|+|+|..|-.+|..|++.|++|+++.|+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~   33 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRD   33 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecC
Confidence            35699999999999999999999999999874

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.36  E-value=0.18  Score=40.70  Aligned_cols=56  Identities=16%  Similarity=0.086  Sum_probs=39.6

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCc
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      .++++    +|+|.|-+|+.+|..|++.|.+|++.+..+..    ...+++.+.  ..|+.++.+.
T Consensus         4 ~~~~~----~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~----~~~~~l~~~--~~gi~~~~g~   59 (445)
T PRK04308          4 QNKKI----LVAGLGGTGISMIAYLRKNGAEVAAYDAELKP----ERVAQIGKM--FDGLVFYTGR   59 (445)
T ss_pred             CCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc----hhHHHHhhc--cCCcEEEeCC
Confidence            45666    99999999999999999999999998765432    112233210  1478776554

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.30  E-value=0.089  Score=39.87  Aligned_cols=34  Identities=24%  Similarity=0.197  Sum_probs=29.9

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRN   47 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~   47 (148)
                      .+.+|    +|+|.|-+|.++|..|++.| .+++|++..
T Consensus        29 ~~s~V----lVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHI----CVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCE----EEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45566    99999999999999999998 789999864

>PLN02494 adenosylhomocysteinase

Probab=94.25  E-value=0.082  Score=43.14  Aligned_cols=38  Identities=13%  Similarity=0.122  Sum_probs=33.3

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ....|+++    +|+|.|.+|..+|..+..+|.+|+++++.+
T Consensus       250 i~LaGKtV----vViGyG~IGr~vA~~aka~Ga~VIV~e~dp  287 (477)
T PLN02494        250 VMIAGKVA----VICGYGDVGKGCAAAMKAAGARVIVTEIDP  287 (477)
T ss_pred             CccCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            34568888    999999999999999999999999988754

>TIGR00136 gidA glucose-inhibited division protein A

Probab=94.24  E-value=0.063  Score=45.16  Aligned_cols=31  Identities=35%  Similarity=0.450  Sum_probs=28.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|.+|+++|..+++.|.+|+++++.
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~   32 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN   32 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence            4699999999999999999999999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.20  E-value=0.07  Score=42.84  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|.|||.|.+|.-+|..|++.|.+|+.+.+.+
T Consensus         5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~   36 (415)
T PRK11064          5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence            45999999999999999999999999998753

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.16  E-value=0.098  Score=41.40  Aligned_cols=30  Identities=27%  Similarity=0.474  Sum_probs=27.9

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++|+|+|.+|..++..+..+|.+|+++.++
T Consensus       170 VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       170 VTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             EEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            499999999999999999999999999875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=94.14  E-value=0.11  Score=38.85  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +++|+|+|..+..+|..+...|.+|+++..++.
T Consensus       102 ~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       102 HVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            459999999999999999999999999986654

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=94.12  E-value=0.096  Score=40.17  Aligned_cols=37  Identities=27%  Similarity=0.184  Sum_probs=32.5

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ...++++    +|+|.|.+|..++..|..+|.+|+++.|+.
T Consensus       149 ~l~g~kv----lViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        149 TIHGSNV----LVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCCCCEE----EEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3457777    999999999999999999999999998863

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.11  E-value=0.2  Score=39.68  Aligned_cols=33  Identities=21%  Similarity=0.240  Sum_probs=29.1

Q ss_pred             EEEEcCchHHHHHHHHHhhcC-------CeEEEEEeCCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIA-------KKVTLIHRNEKL   50 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g-------~~Vtlv~~~~~~   50 (148)
                      |+|||+|..|..+|..|++.+       .+|+++.|++..
T Consensus        14 i~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~   53 (365)
T PTZ00345         14 VSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV   53 (365)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc
Confidence            499999999999999999887       799999887653

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=94.09  E-value=0.098  Score=40.39  Aligned_cols=34  Identities=21%  Similarity=0.129  Sum_probs=30.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +++.|||+|..|--+|..++.-|.+|+++..++.
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~   37 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE   37 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence            4569999999999999999997799999998643

>PRK00536 speE spermidine synthase; Provisional

Probab=94.09  E-value=0.09  Score=39.70  Aligned_cols=57  Identities=12%  Similarity=0.076  Sum_probs=34.7

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEc
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKL   73 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~   73 (148)
                      ||+|+|||||+-|  ++.++.+.-.+|++++-.++.- ......-.+.+.+....++++.
T Consensus        73 pk~VLIiGGGDGg--~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~  130 (262)
T PRK00536         73 LKEVLIVDGFDLE--LAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK  130 (262)
T ss_pred             CCeEEEEcCCchH--HHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee
Confidence            5667999999966  4677777766999998654321 1111111222345567777764

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.08  E-value=0.097  Score=44.90  Aligned_cols=34  Identities=21%  Similarity=0.172  Sum_probs=30.2

Q ss_pred             cceEEEEcCchHHHHHHHHHh-hcCCeEEEEEeCC
Q psy5231          15 IIFTDVIGGGNTAVEEALYLS-NIAKKVTLIHRNE   48 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~-~~g~~Vtlv~~~~   48 (148)
                      +++|+|||+|..|..+|..++ ..|.+|++++.++
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            366799999999999999998 7799999998754

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.05  E-value=0.19  Score=41.78  Aligned_cols=49  Identities=18%  Similarity=0.144  Sum_probs=37.5

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLK   74 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~   74 (148)
                      .+++|+|.|..|-..|..|.+.|.+|++++++      ++..++++    +.|.+.+.+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d------~~~~~~~~----~~g~~~i~G  466 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETS------RTRVDELR----ERGIRAVLG  466 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECC------HHHHHHHH----HCCCeEEEc
Confidence            45599999999999999999999999999864      33445554    356665543

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=94.02  E-value=0.11  Score=44.60  Aligned_cols=34  Identities=18%  Similarity=0.139  Sum_probs=29.7

Q ss_pred             ceEEEEcCchHHHHHHHHHh-hcCCeEEEEEeCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLS-NIAKKVTLIHRNEK   49 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~-~~g~~Vtlv~~~~~   49 (148)
                      ++|+|||+|..|..+|..++ ..|.+|++++..++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            56799999999999999988 58999999987643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=93.96  E-value=0.1  Score=39.52  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~   47 (148)
                      +...++++    +|+|+|-+|-.++..|...| .+|+++.|+
T Consensus       119 ~~~~~k~v----lVlGaGg~a~ai~~aL~~~g~~~V~v~~R~  156 (278)
T PRK00258        119 VDLKGKRI----LILGAGGAARAVILPLLDLGVAEITIVNRT  156 (278)
T ss_pred             CCCCCCEE----EEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            34566777    99999999999999999999 899999885

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=93.93  E-value=0.43  Score=32.50  Aligned_cols=32  Identities=19%  Similarity=0.087  Sum_probs=24.3

Q ss_pred             ceEEEEc-CchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231          16 IFTDVIG-GGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViG-gG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      |.++|.| ++.+|.++|..|.+.|. .|.++.|+
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~   34 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS   34 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence            3458888 56999999999999955 56666665

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>KOG2853|consensus

Probab=93.85  E-value=0.077  Score=41.78  Aligned_cols=34  Identities=24%  Similarity=0.488  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhc----CCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI----AKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~   50 (148)
                      .|+|||||.+|...|..|.++    |.+|.++||.+.+
T Consensus        88 dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   88 DVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             CEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            369999999999999999765    6899999997643

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.84  E-value=0.13  Score=35.06  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=29.6

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~   47 (148)
                      ..++++    +|+|+|.+|...+..|.+.+ .+|+++.|+
T Consensus        17 ~~~~~i----~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~   52 (155)
T cd01065          17 LKGKKV----LILGAGGAARAVAYALAELGAAKIVIVNRT   52 (155)
T ss_pred             CCCCEE----EEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            455666    99999999999999999985 788888764

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.81  E-value=0.086  Score=42.16  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|.|||.|.+|..+|..|++.|.+|+++.+.+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence            35999999999999999999999999998753

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK04148 hypothetical protein; Provisional

Probab=93.78  E-value=0.063  Score=36.45  Aligned_cols=30  Identities=27%  Similarity=0.160  Sum_probs=27.0

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +++||-| .|.+.|..|++.|.+|+.+..++
T Consensus        20 ileIG~G-fG~~vA~~L~~~G~~ViaIDi~~   49 (134)
T PRK04148         20 IVELGIG-FYFKVAKKLKESGFDVIVIDINE   49 (134)
T ss_pred             EEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence            4999999 99999999999999999998653

>PRK13243 glyoxylate reductase; Reviewed

Probab=93.77  E-value=0.11  Score=40.53  Aligned_cols=38  Identities=18%  Similarity=0.199  Sum_probs=33.7

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |.+..||++    .|||-|.+|-.+|..|..+|.+|..+.+.
T Consensus       145 g~~L~gktv----gIiG~G~IG~~vA~~l~~~G~~V~~~d~~  182 (333)
T PRK13243        145 GYDVYGKTI----GIIGFGRIGQAVARRAKGFGMRILYYSRT  182 (333)
T ss_pred             ccCCCCCEE----EEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence            456678888    99999999999999999999999988764

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.75  E-value=0.12  Score=40.52  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=29.5

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      .+++|    +|||.|-.|.++|..|++.|. +++++.+.
T Consensus        23 ~~~~V----lIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         23 REKHV----LIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             cCCcE----EEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            34556    999999999999999999996 89999874

>PRK10637 cysG siroheme synthase; Provisional

Probab=93.73  E-value=0.094  Score=42.65  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=31.5

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      ...|++|    +|||||.+|..=+..|.+.|.+||++..
T Consensus         9 ~l~~~~v----lvvGgG~vA~rk~~~ll~~ga~v~visp   43 (457)
T PRK10637          9 QLRDRDC----LLVGGGDVAERKARLLLDAGARLTVNAL   43 (457)
T ss_pred             EcCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            4578898    9999999999999999999999999964

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.72  E-value=0.27  Score=39.24  Aligned_cols=31  Identities=19%  Similarity=0.320  Sum_probs=28.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|+|.|++|+-.|.-|++.|++|+.+.-.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid   32 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDID   32 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence            4599999999999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
1trb_A	320	Convergent Evolution Of Similar Function In Two Str		2e-23
1f6m_A	320	Crystal Structure Of A Complex Between Thioredoxin		2e-23
1tdf_A	316	Crystal Structure Of Escherichia Coli Thioredoxin R		3e-23
1tde_A	316	Crystal Structure Of Escherichia Coli Thioredoxin R		3e-23
1cl0_A	320	Crystal Structure Of Reduced Thioredoxin Reductase		3e-23
2a87_A	335	Crystal Structure Of M. Tuberculosis Thioredoxin Re		7e-16
1vdc_A	333	Structure Of Nadph Dependent Thioredoxin Reductase		9e-13
2whd_A	351	Barley Nadph-Dependent Thioredoxin Reductase 2 Leng		4e-12
4a5l_A	314	Crystal Structure Of The Thioredoxin Reductase From		3e-11
3f8p_A	323	Structure Of Sulfolobus Solfataricus Trxr-B3 Length		3e-10
3f8d_A	323	Structure Of Sulfolobus Solfataricus Thioredoxin Re		3e-10
2q0k_A	311	Oxidized Thioredoxin Reductase From Helicobacter Py		4e-10
4gcm_A	312	Crystal Structure Of A Thioredoxine Reductase (Trxb		1e-09
3d8x_A	326	Crystal Structure Of Saccharomyces Cerevisiae Nadph		5e-09
3itj_A	338	Crystal Structure Of Saccharomyces Cerevisiae Thior		5e-09
3r9u_A	315	Thioredoxin-Disulfide Reductase From Campylobacter		5e-08
2q7v_A	325	Crystal Structure Of Deinococcus Radiodurans Thiore		5e-07
2zbw_A	335	Crystal Structure Of Thioredoxin Reductase-Like Pro		8e-07
1fl2_A	310	Catalytic Core Component Of The Alkylhydroperoxide		1e-06
1hyu_A	521	Crystal Structure Of Intact Ahpf Length = 521		2e-05
3lzw_A	332	Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductas		2e-05

>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two Structurally Divergent Enzymes Length = 320

Iteration: 1
 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA +V LIHR +  R EKILI RLM KV  G I +     + +
Sbjct: 150 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 209
Query: 80  IIGN----------------------------------NTV--TGQLEMNDGYIKTKLNK 103
           + G+                                  NT    GQLE+ +GYIK +   
Sbjct: 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269
Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
               T T+I GVF        +   + + + G+GCMAALDA+RYL
Sbjct: 270 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 313

>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 320

Iteration: 1
 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA +V LIHR +  R EKILI RLM KV  G I +     + +
Sbjct: 150 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 209
Query: 80  IIGN----------------------------------NTV--TGQLEMNDGYIKTKLNK 103
           + G+                                  NT    GQLE+ +GYIK +   
Sbjct: 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269
Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
               T T+I GVF        +   + + + G+GCMAALDA+RYL
Sbjct: 270 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 313

>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316

Iteration: 1
 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA +V LIHR +  R EKILI RLM KV  G I +     + +
Sbjct: 150 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 209
Query: 80  IIGN----------------------------------NTV--TGQLEMNDGYIKTKLNK 103
           + G+                                  NT    GQLE+ +GYIK +   
Sbjct: 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269
Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
               T T+I GVF        +   + + + G+GCMAALDA+RYL
Sbjct: 270 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 313

>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316

Iteration: 1
 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA +V LIHR +  R EKILI RLM KV  G I +     + +
Sbjct: 150 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 209
Query: 80  IIGN----------------------------------NTV--TGQLEMNDGYIKTKLNK 103
           + G+                                  NT    GQLE+ +GYIK +   
Sbjct: 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269
Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
               T T+I GVF        +   + + + G+GCMAALDA+RYL
Sbjct: 270 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 313

>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From Escherichia Coli Length = 320

Iteration: 1
 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA +V LIHR +  R EKILI RLM KV  G I +     + +
Sbjct: 150 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 209
Query: 80  IIGN----------------------------------NTV--TGQLEMNDGYIKTKLNK 103
           + G+                                  NT    GQLE+ +GYIK +   
Sbjct: 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269
Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
               T T+I GVF        +   + + + G+GCMAALDA+RYL
Sbjct: 270 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 313

>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase Length = 335

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 37/161 (22%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGG++A+EEA +L+  A+ VTL+HR ++ R  KI++DR     N  KI     H V  
Sbjct: 160 VIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRAR---NNDKIRFLTNHTVVA 216
Query: 80  IIGNNTVTG-----------------------QLEMNDGYIKTKLN-KKTGY-------T 108
           + G+ TVTG                         E   G ++  ++    GY       T
Sbjct: 217 VDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTT 276
Query: 109 STNISGVFCRWR-CTRLYFIDKQLLALGSGCMAALDAQRYL 148
           ST++ GVF       R Y   + + A GSGC AA+DA+R+L
Sbjct: 277 STSLPGVFAAGDLVDRTY--RQAVTAAGSGCAAAIDAERWL 315

>pdb|1VDC|A Chain A, Structure Of Nadph Dependent Thioredoxin Reductase Length = 333

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 40/164 (24%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDR--------------LMQKVN 65
           VIGGG++A+EEA +L+    KV +IHR +  R  KI+  R              +++   
Sbjct: 164 VIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYG 223
Query: 66  EGKIDI----KLKHIVHK------------IIGNNTVT----GQLEMN-DGYIKTKLNKK 104
           +G+ D+    K+K++V               IG+   T    G +E++ DGY+ T    K
Sbjct: 224 DGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVT----K 279
Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
            G T T++ GVF         +  + + A G+GCMAALDA+ YL
Sbjct: 280 PGTTQTSVPGVFAAGDVQDKKY-RQAITAAGTGCMAALDAEHYL 322

>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2 Length = 351

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 40/164 (24%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLM-----QKVNEGKI----- 69
           VIGGG++A+EE  +L+    +V +IHR    R  KI+  R +     Q V + ++     
Sbjct: 182 VIGGGDSAMEEGNFLTKYGSQVYIIHRRNTFRASKIMQARALSNPKIQVVWDSEVVEAYG 241
Query: 70  --------DIKLKHIVHK------------IIGNNTVT----GQLEMN-DGYIKTKLNKK 104
                    +K+K++V               IG+   T    GQLE++ DGY+ T    K
Sbjct: 242 GAGGGPLAGVKVKNLVTGEVSDLQVSGLFFAIGHEPATKFLNGQLELHADGYVAT----K 297
Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
            G T T++ GVF         +  + + A GSGCMAALDA+ YL
Sbjct: 298 PGSTHTSVEGVFAAGDVQDKKY-RQAITAAGSGCMAALDAEHYL 340

>pdb|4A5L|A Chain A, Crystal Structure Of The Thioredoxin Reductase From Entamoeba Histolytica Length = 314

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 42/163 (25%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVN------------EG 67
           V+GGG+ A+EEAL+L+    KV ++HR +  R  K + +R++                EG
Sbjct: 157 VVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLNHPKIEVIWNSELVELEG 216
Query: 68  KIDIKLKHIVHKI----------------IGNNT----VTGQLE-MNDGYIKTKLNKKTG 106
             D+     +H +                IG++     + GQ++  +DGYI T+  K   
Sbjct: 217 DGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILTEGPK--- 273
Query: 107 YTSTNISGVF-CRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
              T++ GVF C   C R+Y   + ++A GSGCMAAL  +++L
Sbjct: 274 ---TSVDGVFACGDVCDRVY--RQAIVAAGSGCMAALSCEKWL 311

>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3 Length = 323

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKI------DIKL 73
           VIGGG++A+E A  LS+ + KV LIHR +  + + I ++ + +K N   +      +IK 
Sbjct: 159 VIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKG 218
Query: 74  KHIVHKIIGNNTVTG---QLEMNDGYIKTKLNKKTGYTSTN------------------- 111
             +V +++  N  TG   +L +N  +I+   +  T +  +N                   
Sbjct: 219 DKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTS 278
Query: 112 ISGVFCRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
           + GVF    CT  +   +Q++ A+  G +AA  A RY+
Sbjct: 279 VPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYV 316

>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase Mutant C147a Length = 323

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKI------DIKL 73
           VIGGG++A+E A  LS+ + KV LIHR +  + + I ++ + +K N   +      +IK 
Sbjct: 159 VIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKG 218
Query: 74  KHIVHKIIGNNTVTG---QLEMNDGYIKTKLNKKTGYTSTN------------------- 111
             +V +++  N  TG   +L +N  +I+   +  T +  +N                   
Sbjct: 219 DKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTS 278
Query: 112 ISGVFCRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
           + GVF    CT  +   +Q++ A+  G +AA  A RY+
Sbjct: 279 VPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYV 316

>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In Complex With Nadp+ Length = 311

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGG+TAVEEA+YL+NI KKV LIHR +  RC  I ++      N  KI+    ++V +
Sbjct: 148 VLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAK---NNDKIEFLTPYVVEE 204
Query: 80  IIGNNTVTGQLEMND 94
           I G+ +    L + +
Sbjct: 205 IKGDASGVSSLSIKN 219

>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 35/160 (21%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGG++AVEE  +L+  A KVT++HR ++LR ++IL DR  +     KID    H +  
Sbjct: 150 VIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKN---DKIDFIWSHTLKS 206
Query: 80  I------IGNNTVT----GQLEMN--DG---YIKTK----------LNKKTGY------T 108
           I      +G+ T+T    G  E +  DG   YI  K          +    GY       
Sbjct: 207 INEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGXKPLTAPFKDLGITNDVGYIVTKDDX 266
Query: 109 STNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
           +T++ G+F      R   + + + A G G +AA  A  Y+
Sbjct: 267 TTSVPGIFAAGDV-RDKGLRQIVTATGDGSIAAQSAAEYI 305

>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph Dependent Thioredoxin Reductase 1 Length = 326

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 38/162 (23%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDR--------------LMQKVN 65
           VIGGG++A EEA +L+    KV ++ R + LR   I+  R               ++   
Sbjct: 166 VIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKG 225
Query: 66  EGKI---------------DIKLKHIVHKI---IGNNTVTGQLEMND-GYIKTKLNKKTG 106
           +GK+               D+ +  + + I        V GQ++ ++ GYIKT      G
Sbjct: 226 DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKT----VPG 281
Query: 107 YTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
            + T++ G F         +  + + + GSGCMAALDA++YL
Sbjct: 282 SSLTSVPGFFAAGDVQDSKY-RQAITSAGSGCMAALDAEKYL 322

>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin Reductase 1 (trr1) Length = 338

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 38/162 (23%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDR--------------LMQKVN 65
           VIGGG++A EEA +L+    KV ++ R + LR   I+  R               ++   
Sbjct: 178 VIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKG 237
Query: 66  EGKI---------------DIKLKHIVHKI---IGNNTVTGQLEMND-GYIKTKLNKKTG 106
           +GK+               D+ +  + + I        V GQ++ ++ GYIKT      G
Sbjct: 238 DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKT----VPG 293
Query: 107 YTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
            + T++ G F         +  + + + GSGCMAALDA++YL
Sbjct: 294 SSLTSVPGFFAAGDVQDSKY-RQAITSAGSGCMAALDAEKYL 334

>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni. Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 15/99 (15%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGG+TA+EEALYL+NI  K+ LIHR ++ R     ++++  K NE KI++     V +
Sbjct: 152 VLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKV--KKNE-KIELITSASVDE 208
Query: 80  IIGNNT-VTG-QLEMNDGYIKTKLNKKTGYTSTNISGVF 116
           + G+   V G ++++ DG I+            N+ G+F
Sbjct: 209 VYGDKXGVAGVKVKLKDGSIR----------DLNVPGIF 237

>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin Reductase Length = 325

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGG+ AVEE ++L+  A +VT+IHR + LR  K+   R        K+       V +
Sbjct: 157 VIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAFANP---KMKFIWDTAVEE 213
Query: 80  IIGNNTVTG 88
           I G ++V+G
Sbjct: 214 IQGADSVSG 222

>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein From Thermus Thermophilus Hb8 Length = 335

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 42/67 (62%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           ++GGG++AV+ AL L + A+++TLIHR  + R  +  +  L +   EG++++   + + +
Sbjct: 157 IVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELXKAHEEGRLEVLTPYELRR 216
Query: 80  IIGNNTV 86
           + G+  V
Sbjct: 217 VEGDERV 223

>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide Reductase Ahpf From E.Coli Length = 310

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 37/161 (22%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGN+ VE A+ L+ I + VTL+    +++ +++L D+L    N   +DI L     +
Sbjct: 149 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKN---VDIILNAQTTE 205
Query: 80  IIGNNTVTGQLEMNDG-------------YIKTKLNKKTGY------------------T 108
           + G+ +    LE  D              +++  L   T +                   
Sbjct: 206 VKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKC 265
Query: 109 STNISGVFCRWRCTRLYFIDKQ-LLALGSGCMAALDAQRYL 148
            TN+ GVF    CT + +  KQ ++A G G  A+L A  YL
Sbjct: 266 ETNVKGVFAAGDCTTVPY--KQIIIATGEGAKASLSAFDYL 304

>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf Length = 521

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 37/161 (22%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGN+ VE A+ L+ I + VTL+    +++ +++L D++    N   +DI L     +
Sbjct: 360 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKN---VDIILNAQTTE 416
Query: 80  IIGNNTVTGQLEMNDG-------------YIKTKLNKKTGY------------------T 108
           + G+ +    LE  D              +++  L   T +                   
Sbjct: 417 VKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKC 476
Query: 109 STNISGVFCRWRCTRLYFIDKQ-LLALGSGCMAALDAQRYL 148
            T++ GVF    CT + +  KQ ++A G G  A+L A  YL
Sbjct: 477 ETSVKGVFAAGDCTTVPY--KQIIIATGEGAKASLSAFDYL 515

>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I) Length = 332

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           ++GGG++AV+ AL L  IAK+V++IHR +K R  +  ++ L    +  K+++    +  +
Sbjct: 159 ILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENL----HASKVNVLTPFVPAE 214
Query: 80  IIGNNTV 86
           +IG + +
Sbjct: 215 LIGEDKI 221

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	1e-50
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	7e-45
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	4e-44
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	6e-44
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	5e-43
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	4e-41
3r9u_A	315	Thioredoxin reductase; structural genomics, center	6e-41
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	2e-39
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	7e-37
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	2e-33
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	7e-33
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-20
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	1e-19
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	3e-17
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	7e-16
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	3e-12
4fk1_A	304	Putative thioredoxin reductase; structural genomic	4e-12
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	7e-05

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score =  163 bits (414), Expect = 1e-50
 Identities = 67/174 (38%), Positives = 83/174 (47%), Gaps = 55/174 (31%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA +V LIHR +  R EKILI RLM KV  G I +     + +
Sbjct: 150 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 209

Query: 80  IIGN----------NTVT--------------------------GQLEMNDGYIKTKLNK 103
           + G+          +T                            GQLE+ +GYIK +   
Sbjct: 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269

Query: 104 KTGYTSTNISGVFC-------RWR--CTRLYFIDKQLLALGSGCMAALDAQRYL 148
               T T+I GVF         +R   T          + G+GCMAALDA+RYL
Sbjct: 270 HGNATQTSIPGVFAAGDVMDHIYRQAIT----------SAGTGCMAALDAERYL 313

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score =  148 bits (376), Expect = 7e-45
 Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 59/172 (34%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGG++A+EEA +L+  A+ VTL+HR ++ R  KI++DR     N  KI     H V  
Sbjct: 160 VIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRAR---NNDKIRFLTNHTVVA 216

Query: 80  IIGNNTVTG----------------------------------QLEMND-GYIKTKLNKK 104
           + G+ TVTG                                   ++++  GY+      +
Sbjct: 217 VDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLV----Q 272

Query: 105 TGYTSTNISGVFC-------RWRCTRLYFIDKQ-LLALGSGCMAALDAQRYL 148
              TST++ GVF         +R         Q + A GSGC AA+DA+R+L
Sbjct: 273 GRTTSTSLPGVFAAGDLVDRTYR---------QAVTAAGSGCAAAIDAERWL 315

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score =  146 bits (370), Expect = 4e-44
 Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 60/172 (34%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGG+ AVEE ++L+  A +VT+IHR + LR  K+   R        K+       V +
Sbjct: 157 VIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAF---ANPKMKFIWDTAVEE 213

Query: 80  IIGNNTVTG----------------------------------QLEMND-GYIKTKLNKK 104
           I G ++V+G                                   + + D GY+  +    
Sbjct: 214 IQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVR---- 269

Query: 105 TGYTSTNISGVF----CRWRCTRLYFIDKQL----LALGSGCMAALDAQRYL 148
                TNI  +F               D        ++G+G  AA+  +R L
Sbjct: 270 -DEIYTNIPMLFAAGDVS---------DYIYRQLATSVGAGTRAAMMTERQL 311

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338

 Score =  146 bits (370), Expect = 6e-44
 Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 66/182 (36%)

Query: 12  KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDI 71
           KP+     VIGGG++A EEA +L+    KV ++ R + LR   I+  R        KI+I
Sbjct: 174 KPLA----VIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAE---KNEKIEI 226

Query: 72  KLKHIVHKIIGN----------NTVT-------------------------GQLEMND-G 95
               +  +  G+          NT                           GQ++ ++ G
Sbjct: 227 LYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAG 286

Query: 96  YIKTKLNKKTGYTSTNISGVFC-------RWR--CTRLYFIDKQLLALGSGCMAALDAQR 146
           YIKT      G + T++ G F        ++R   T          + GSGCMAALDA++
Sbjct: 287 YIKT----VPGSSLTSVPGFFAAGDVQDSKYRQAIT----------SAGSGCMAALDAEK 332

Query: 147 YL 148
           YL
Sbjct: 333 YL 334

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score =  143 bits (363), Expect = 5e-43
 Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 66/183 (36%)

Query: 12  KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDI 71
           KP+     VIGGG++A+EEA +L+    KV +IHR +  R  KI+  R +   +  KID+
Sbjct: 160 KPLA----VIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRAL---SNPKIDV 212

Query: 72  KLKHIVHKIIGN------------NTVT-------------------------GQLEMND 94
                V +  G+            N VT                         G +E++ 
Sbjct: 213 IWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDS 272

Query: 95  -GYIKTKLNKKTGYTSTNISGVFC-------RWRCTRLYFIDKQ-LLALGSGCMAALDAQ 145
            GY+ T    K G T T++ GVF        ++R         Q + A G+GCMAALDA+
Sbjct: 273 DGYVVT----KPGTTQTSVPGVFAAGDVQDKKYR---------QAITAAGTGCMAALDAE 319

Query: 146 RYL 148
            YL
Sbjct: 320 HYL 322

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score =  138 bits (350), Expect = 4e-41
 Identities = 47/178 (26%), Positives = 65/178 (36%), Gaps = 66/178 (37%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGG+TAVEEA+YL+NI KKV LIHR +  RC  I ++      N  KI+    ++V +
Sbjct: 148 VLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAK---NNDKIEFLTPYVVEE 204

Query: 80  IIGN----------NTVTGQ------------------------------LEMND-GYIK 98
           I G+          NT T +                               + ++ G I 
Sbjct: 205 IKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIV 264

Query: 99  TKLNKKTGYTSTNISGVF----CRWRCTRLYFIDKQL----LALGSGCMAALDAQRYL 148
                      TN+ G+F     R                  A   G  AAL    YL
Sbjct: 265 VD-----FSMKTNVQGLFAAGDIR---------IFAPKQVVCAASDGATAALSVISYL 308

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score =  138 bits (349), Expect = 6e-41
 Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 65/177 (36%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           V+GGG+TA+EEALYL+NI  K+ LIHR ++ R     ++++ +     KI++     V +
Sbjct: 152 VLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKVKKN---EKIELITSASVDE 208

Query: 80  IIGN---------NTVTGQ------------------------------LEMND-GYIKT 99
           + G+             G                                 M + G +  
Sbjct: 209 VYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSV 268

Query: 100 KLNKKTGYTSTNISGVF----CRWRCTRLYFIDKQL----LALGSGCMAALDAQRYL 148
                     T+++G+F     R                  A G G +AAL A  Y+
Sbjct: 269 D-----LKMQTSVAGLFAAGDLR---------KDAPKQVICAAGDGAVAALSAMAYI 311

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score =  134 bits (340), Expect = 2e-39
 Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 63/175 (36%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGG++A+E A  LS+ + KV LIHR +  + + I ++ + +      ++  L  +V +
Sbjct: 159 VIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKK--KP-NVEFVLNSVVKE 215

Query: 80  IIGNNTVTG-----------------------------------QLEMND-GYIKTKLNK 103
           I G+  V                                      +E +  GYIK     
Sbjct: 216 IKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVD--- 272

Query: 104 KTGYTSTNISGVF----CRWRCTRLYFIDKQLL------ALGSGCMAALDAQRYL 148
              +  T++ GVF    C             L       A+  G +AA  A RY+
Sbjct: 273 --EWMRTSVPGVFAAGDCT---------SAWLGFRQVITAVAQGAVAATSAYRYV 316

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score =  127 bits (321), Expect = 7e-37
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 55/170 (32%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGN+ VE A+ L+ I + VTL+    +++ +++L D+L     +  +DI L     +
Sbjct: 149 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRS--LK-NVDIILNAQTTE 205

Query: 80  IIGN----------NTVTG-------------------------QLEMND-GYIKTKLNK 103
           + G+          + V+G                          +E N  G I      
Sbjct: 206 VKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIID--- 262

Query: 104 KTGYTSTNISGVF----CRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
                 TN+ GVF    C    T  Y   KQ++ A G G  A+L A  YL
Sbjct: 263 --AKCETNVKGVFAAGDCT---TVPY---KQIIIATGEGAKASLSAFDYL 304

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score =  118 bits (298), Expect = 2e-33
 Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 57/171 (33%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
            IGGGN+    A+ +S   K VT+I    K  CE   +  +     +  I   +   V +
Sbjct: 160 TIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQEI----KKRNIPYIMNAQVTE 215

Query: 80  IIGN----------NTVTGQ--------------------------LEMND-GYIKTKLN 102
           I+G+          +  TG+                          +++++ GYI     
Sbjct: 216 IVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVD-- 273

Query: 103 KKTGYTSTNISGVF----CRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
                  T++ GV+         +  +    Q+  A+G GC AAL      
Sbjct: 274 ---SRQRTSVPGVYAAGDVT---SGNF---AQIASAVGDGCKAALSLYSDS 315

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score =  120 bits (302), Expect = 7e-33
 Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 55/170 (32%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGN+ VE A+ L+ I + VTL+    +++ +++L D++     +  +DI L     +
Sbjct: 360 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRS--LK-NVDIILNAQTTE 416

Query: 80  IIGN----------NTVTG-------------------------QLEMND-GYIKTKLNK 103
           + G+          + V+G                          LE N  G I      
Sbjct: 417 VKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIID--- 473

Query: 104 KTGYTSTNISGVF----CRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
                 T++ GVF    C    T  Y   KQ++ A G G  A+L A  YL
Sbjct: 474 --AKCETSVKGVFAAGDCT---TVPY---KQIIIATGEGAKASLSAFDYL 515

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 84.2 bits (209), Expect = 2e-20
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 44/140 (31%)

Query: 12  KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDI 71
           K V+I     GGG++AV+ AL L + A+++TLIHR  + R  +  +  LM+   EG++++
Sbjct: 153 KRVLIV----GGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEV 208

Query: 72  KLKHIVHKIIGNNTVTG-----------------------------------QLEMNDGY 96
              + + ++ G+  V                                      L +    
Sbjct: 209 LTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNK 268

Query: 97  IKTKLNKKTGYTSTNISGVF 116
           IK          +T+I GV+
Sbjct: 269 IKVDTT-----MATSIPGVY 283

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 81.9 bits (203), Expect = 1e-19
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 48/140 (34%)

Query: 12  KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDI 71
           + V I     GGG++AV+ AL L  IAK+V++IHR +K R  +  ++ L       K+++
Sbjct: 155 RRVAIL----GGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLH----ASKVNV 206

Query: 72  KLKHIVHKIIGNNTVTG-----------------------------------QLEMNDGY 96
               +  ++IG + +                                      L++    
Sbjct: 207 LTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNS 266

Query: 97  IKTKLNKKTGYTSTNISGVF 116
           I  K         TNI G F
Sbjct: 267 IVVKST-----METNIEGFF 281

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 75.8 bits (187), Expect = 3e-17
 Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 40/132 (30%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           ++GGG++A++  + L   A  VTL+HR  + +        + +    G ID+ L+  V  
Sbjct: 168 IVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVAS 227

Query: 80  IIGNN---------TVTGQ--------------------------LEMNDGYIKTKLNKK 104
           I  +N         +  G                           LE+ +  +    +  
Sbjct: 228 IEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSH-- 285

Query: 105 TGYTSTNISGVF 116
                T++ G++
Sbjct: 286 ---MKTSVDGLY 294

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 71.4 bits (176), Expect = 7e-16
 Identities = 25/161 (15%), Positives = 44/161 (27%), Gaps = 47/161 (29%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VI     A+  AL L +  +     +   +   ++         +    + +     + +
Sbjct: 146 VIAASPMAIHHALMLPDWGETTFFTNGIVEPDADQH------ALLAARGVRV-ETTRIRE 198

Query: 80  IIGNNTVT-----------------------------GQLEMND--GYIKTKLNKKTGYT 108
           I G+  V                                +E       I T   K+    
Sbjct: 199 IAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQ---- 254

Query: 109 STNISGVFCRWRCTRLYFIDKQL-LALGSGCMAALDAQRYL 148
            T   G+F      R       + LA+G G MA   A R +
Sbjct: 255 -TTARGIFACGDVARPA---GSVALAVGDGAMAGAAAHRSI 291

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Length = 180

 Score = 59.9 bits (146), Expect = 3e-12
 Identities = 8/41 (19%), Positives = 10/41 (24%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRL 60
             G     V     +S        +H    LR E      L
Sbjct: 140 AAGVARGKVPGHAIISAGDGAYVAVHLVSDLRGEPYKDHAL 180

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 61.0 bits (149), Expect = 4e-12
 Identities = 15/167 (8%), Positives = 40/167 (23%), Gaps = 56/167 (33%)

Query: 20  VIGGGNT-AVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVH 78
           +I       +     + N +  + +     +L         +M +++   I + +   + 
Sbjct: 151 IISENEDHTLHMTKLVYNWSTDLVIATNGNELS------QTIMDELSNKNIPV-ITESIR 203

Query: 79  KIIGNNT-VTG------------------------------QLEMND-GYIKTKLNKKTG 106
            + G    +                                  E+   G        +  
Sbjct: 204 TLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGR-- 261

Query: 107 YTSTNISGVF----CRWRCTRLYFIDKQL-LALGSGCMAALDAQRYL 148
              T+   ++         T+       L +A   G  AA+     +
Sbjct: 262 ---TSEKNIYLAGETT---TQGP---SSLIIAASQGNKAAIAINSDI 299

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 24/152 (15%), Positives = 38/152 (25%), Gaps = 42/152 (27%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKI---------LIDRLMQKVNEGKID 70
           VIGG  +  + A  L+     + L      L                 RL   + +G   
Sbjct: 171 VIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARI 230

Query: 71  IKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNK---KTGYT------------------- 108
               H   K I  N     +  + G      ++    TG+                    
Sbjct: 231 EMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIK 290

Query: 109 ------STNISGVF-----CRWRCTRLYFIDK 129
                 ST    +F           +L +I K
Sbjct: 291 LTTHDESTRYPNIFMIGATVENDNAKLCYIYK 322

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.93
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.91
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.88
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.87
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.87
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.87
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.86
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.86
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.86
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.86
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.86
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.86
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.85
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.85
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.85
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.85
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.84
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.84
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.83
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.83
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.83
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.83
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.83
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.83
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.83
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.83
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.83
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.83
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.83
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.82
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.82
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.82
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.82
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.82
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.82
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.82
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.82
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.82
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.82
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.81
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.81
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.81
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.81
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.81
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.81
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.81
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.81
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.8
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.8
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.8
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.8
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.8
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.8
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.79
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.79
4dna_A	463	Probable glutathione reductase; structural genomic	99.79
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.79
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.79
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.79
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.79
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.79
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.78
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.78
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.78
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.78
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.78
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.78
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.78
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.77
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.76
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.71
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.71
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.68
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.66
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.65
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.64
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.62
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.62
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.61
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.6
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.59
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.58
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.57
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.47
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.46
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.42
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.41
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.41
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.39
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.29
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.27
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.18
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.17
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.14
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.95
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.78
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.69
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.63
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.59
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.54
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.49
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.43
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.39
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.36
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.34
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.33
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.3
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.28
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.23
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.21
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.19
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.18
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.16
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.15
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.14
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.14
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.14
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.13
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.13
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.11
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.11
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.11
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.1
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.08
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.08
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.06
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.06
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.05
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.02
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.02
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.01
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.01
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.01
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.0
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.99
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.98
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.97
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.96
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.96
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.94
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.92
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.91
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.91
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.9
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.9
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.9
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.89
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.89
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.89
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.88
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.88
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.86
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.86
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.86
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.85
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.84
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.83
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.83
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.83
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.82
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.81
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.81
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.8
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	97.76
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.75
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	97.73
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.72
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.71
3dme_A	369	Conserved exported protein; structural genomics, P	97.7
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.7
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.7
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.7
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.7
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.7
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.69
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.68
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	97.66
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.66
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.66
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.66
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.65
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.65
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.65
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.65
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.64
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.63
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.62
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.62
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.62
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.6
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.59
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	97.59
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	97.59
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.58
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.58
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.57
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.56
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.56
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.56
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	97.56
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.55
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.55
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.55
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.54
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.54
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.54
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.52
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.52
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	97.52
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.51
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.51
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.49
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	97.47
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.44
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.43
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.43
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	97.43
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.43
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.42
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.42
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.42
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.41
3atr_A	453	Conserved archaeal protein; saturating double bond	97.41
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.41
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.41
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.4
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.38
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.38
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.38
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.38
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.37
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.37
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.36
4dna_A	463	Probable glutathione reductase; structural genomic	97.36
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.35
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.35
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.34
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.34
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.33
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.33
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.31
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.31
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.31
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.3
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.3
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.29
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.29
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.28
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.28
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.25
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	97.25
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.25
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.25
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.24
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.24
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.23
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.23
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.22
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.22
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.21
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.21
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.19
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.19
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.16
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.14
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.09
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.09
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.08
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.08
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.08
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.08
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.08
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.06
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.04
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.02
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.0
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	96.99
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.99
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.99
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.96
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.95
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.91
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.9
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	96.9
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.89
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	96.87
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.87
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.83
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.82
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.79
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	96.76
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.73
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.7
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.68
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.64
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.64
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.61
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.59
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.58
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.56
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.56
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.54
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.52
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.5
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.44
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.42
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.39
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	96.39
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.37
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.23
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.18
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	95.99
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	95.99
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.92
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.88
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.86
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.85
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.8
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	95.71
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.69
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.68
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.65
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.61
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	95.56
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	95.53
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	95.52
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	95.47
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	95.44
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	95.41
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.4
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.4
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	95.36
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.36
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.35
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.32
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	95.31
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.26
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.26
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.24
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.19
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.17
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.16
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.12
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	95.1
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	95.06
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.01
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.01
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.99
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	94.98
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.97
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	94.97
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.96
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.95
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	94.94
3l07_A	285	Bifunctional protein fold; structural genomics, ID	94.94
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	94.93
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.9
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.89
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.89
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.87
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	94.87
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.84
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.81
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	94.8
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.8
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.72
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.71
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.69
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	94.67
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.66
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.63
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.62
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.59
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	94.58
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.57
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.57
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	94.53
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	94.53
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.52
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	94.49
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.49
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.47
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	94.45
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.43
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.43
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.42
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.41
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.4
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.4
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	94.4
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.34
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	94.34
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.33
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	94.32
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.3
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.29
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	94.29
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.28
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.28
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	94.22
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	94.21
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.19
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	94.19
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	94.19
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	94.17
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.15
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.14
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	94.12
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.1
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.07
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.06
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.03
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.01
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.0
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.0
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.98
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	93.98
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	93.97
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	93.96
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.96
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.94
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.93
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	93.92
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	93.91
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.91
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.91
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.89
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.89
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.89
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	93.86
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	93.84
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	93.83
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	93.83
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	93.8
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	93.79
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.78
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	93.78
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	93.77
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.76
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.76
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	93.75
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	93.74
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	93.73
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	93.73
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.7
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	93.69
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	93.68
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	93.66
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	93.65
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	93.65
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	93.63
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	93.62
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	93.62
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	93.61
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	93.57
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.55
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.54
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	93.51
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	93.5
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	93.49
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.49
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.46
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	93.45
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	93.45
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	93.43
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	93.41
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	93.41
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	93.4
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.38
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.37
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	93.36
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	93.33
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	93.29
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	93.29
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.27
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	93.27
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.25
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.24
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	93.18
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	93.16
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	93.14
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	93.12
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.12
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	93.11
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	93.09
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	93.07
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	93.06
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.06
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	93.05
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	93.01
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.0
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	92.99
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	92.99
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	92.98
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	92.95
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	92.93

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.93  E-value=4.8e-25  Score=166.44  Aligned_cols=133  Identities=33%  Similarity=0.485  Sum_probs=102.0

Q ss_pred             hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231           3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      ++.++.+++|++    +|||||++|+|+|..|+++|.+||+++|.+++........+..   +..++.......+..+..
T Consensus       137 ~~~~~~~~~k~v----vViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  209 (312)
T 4gcm_A          137 VCDGAFFKNKRL----FVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAF---KNDKIDFIWSHTLKSINE  209 (312)
T ss_dssp             HHHGGGGTTCEE----EEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHH---HCTTEEEECSEEEEEEEE
T ss_pred             ccCccccCCCEE----EEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchhHHHHHH---HhcCcceeeecceeeeec
Confidence            456677788888    9999999999999999999999999999988876544443333   266777776655444332


Q ss_pred             CCe----------------------------------ee--cceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc
Q psy5231          83 NNT----------------------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF  126 (148)
Q Consensus        83 ~~~----------------------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~  126 (148)
                      ...                                  +.  .++..+.|+|.||++     ++||+|+|||+|||++.+ 
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~-----~~Ts~pgIyA~GDv~~~~-  283 (312)
T 4gcm_A          210 KDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDD-----MTTSVPGIFAAGDVRDKG-  283 (312)
T ss_dssp             ETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTT-----SBCSSTTEEECSTTBSCS-
T ss_pred             cccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCC-----CccCCCCEEEEeecCCCc-
Confidence            110                                  00  123334588999999     999999999999998755 


Q ss_pred             chhHHHHHHHHHHHHHHHHhhC
Q psy5231         127 IDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       127 ~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ++++..|+++|+.||.+|++||
T Consensus       284 ~~~~~~A~~~G~~AA~~i~~~L  305 (312)
T 4gcm_A          284 LRQIVTATGDGSIAAQSAAEYI  305 (312)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999986

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.91  E-value=3.6e-24  Score=161.14  Aligned_cols=126  Identities=33%  Similarity=0.568  Sum_probs=98.1

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe---
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT---   85 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~---   85 (148)
                      ++++++    +|||||++|+|+|..|+++|++||+++|.+.+...+....+...   ..++..+..+.+.++.....   
T Consensus       150 ~~~~~v----vViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~  222 (314)
T 4a5l_A          150 FRNKVL----MVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLN---HPKIEVIWNSELVELEGDGDLLN  222 (314)
T ss_dssp             GTTSEE----EEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHT---CTTEEEECSEEEEEEEESSSSEE
T ss_pred             cCCCeE----EEECCChHHHHHHHHHHHhCCeeeeecccccccccchhhhhhhc---ccceeeEeeeeeEEEEeeeeccc
Confidence            356666    99999999999999999999999999998776655555444443   56788887777766654221   


Q ss_pred             --------------------------------eecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHH
Q psy5231          86 --------------------------------VTGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLL  132 (148)
Q Consensus        86 --------------------------------~~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~  132 (148)
                                                      +...+.+++ |++ +|+.     ++||+|+|||+|||++.+ ++++..
T Consensus       223 ~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~i-v~~~-----~~Ts~pgIyA~GDv~~~~-~~~~~~  295 (314)
T 4a5l_A          223 GAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYI-LTEG-----PKTSVDGVFACGDVCDRV-YRQAIV  295 (314)
T ss_dssp             EEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCB-CCBT-----TBCSSTTEEECSTTTCSS-CCCHHH
T ss_pred             eeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeE-eCCC-----CccCCCCEEEEEeccCCc-chHHHH
Confidence                                            111234444 554 7777     999999999999999877 568999


Q ss_pred             HHHHHHHHHHHHHhhC
Q psy5231         133 ALGSGCMAALDAQRYL  148 (148)
Q Consensus       133 A~~~G~~aA~~i~~~l  148 (148)
                      |+++|++||.+|++||
T Consensus       296 A~~~G~~AA~~~~~yL  311 (314)
T 4a5l_A          296 AAGSGCMAALSCEKWL  311 (314)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999996

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.88  E-value=4.6e-22  Score=149.99  Aligned_cols=139  Identities=47%  Similarity=0.730  Sum_probs=109.1

Q ss_pred             hhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231           5 FGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      ....+.++++    +|||+|++|+|+|..|++.|.+|+++++.+.+...+.+.+.+.+.|++.||++++++++.++..++
T Consensus       139 ~~~~~~~~~v----~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~  214 (320)
T 1trb_A          139 DGFFYRNQKV----AVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ  214 (320)
T ss_dssp             HGGGGTTSEE----EEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECS
T ss_pred             CccccCCCeE----EEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccCHHHHHHHHHhcccCCeEEEcCceeEEEEcCC
Confidence            3444566777    999999999999999999999999999988887677777788888888999999999888775322


Q ss_pred             -----------------e-------------------eecceeecCCeEEecCCCCcccccCCCCCeEEecccCccccch
Q psy5231          85 -----------------T-------------------VTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFID  128 (148)
Q Consensus        85 -----------------~-------------------~~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~  128 (148)
                                       .                   +..++.+++|++.+|+.+....++|+.|+||++|||+..+ ++
T Consensus       215 ~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~-~~  293 (320)
T 1trb_A          215 MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI-YR  293 (320)
T ss_dssp             SSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSS-SC
T ss_pred             CceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcccccccCceEEECCCcccccccCCCCCEEEcccccCCc-ch
Confidence                             1                   0112334467788888700000289999999999999865 46


Q ss_pred             hHHHHHHHHHHHHHHHHhhC
Q psy5231         129 KQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       129 ~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ++..|+.+|+.||.+|.++|
T Consensus       294 ~~~~A~~~g~~aa~~i~~~l  313 (320)
T 1trb_A          294 QAITSAGTGCMAALDAERYL  313 (320)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccHHHHHHHHHHHH
Confidence            89999999999999999875

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.87  E-value=1.4e-21  Score=136.96  Aligned_cols=124  Identities=18%  Similarity=0.229  Sum_probs=99.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC----------c------hHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR----------C------EKILIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~----------~------~~~~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      +++|||||++|+++|..|++.|.+|+++++.+.+.          .      .+.+.+.+.+.+++.|++++++ ++.++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            46999999999999999999999999999875432          1      3566777888888899999998 88777


Q ss_pred             ecCCe-------------------------e-e-cceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHH
Q psy5231          81 IGNNT-------------------------V-T-GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLA  133 (148)
Q Consensus        81 ~~~~~-------------------------~-~-~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A  133 (148)
                      ..++.                         + . .++++++|.+.+|+.     ++|+.|+|||+|||+..+ .+++..|
T Consensus        82 ~~~~~~~~v~~~~g~i~ad~vI~A~G~~~~~~~~~g~~~~~g~i~vd~~-----~~t~~~~i~a~GD~~~~~-~~~~~~A  155 (180)
T 2ywl_A           82 RDMGGVFEVETEEGVEKAERLLLCTHKDPTLPSLLGLTRRGAYIDTDEG-----GRTSYPRVYAAGVARGKV-PGHAIIS  155 (180)
T ss_dssp             EECSSSEEEECSSCEEEEEEEEECCTTCCHHHHHHTCCEETTEECCCTT-----CBCSSTTEEECGGGGTCC-SCCHHHH
T ss_pred             EEcCCEEEEEECCCEEEECEEEECCCCCCCccccCCCCccCceEEeCCC-----CCcCCCCEEEeecccCcc-hhhHHHH
Confidence            64321                         0 0 134445678889998     999999999999999876 2388999


Q ss_pred             HHHHHHHHHHHHhh
Q psy5231         134 LGSGCMAALDAQRY  147 (148)
Q Consensus       134 ~~~G~~aA~~i~~~  147 (148)
                      ..+|+.||.+|..+
T Consensus       156 ~~~g~~aa~~i~~~  169 (180)
T 2ywl_A          156 AGDGAYVAVHLVSD  169 (180)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHH
Confidence            99999999999865

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.87  E-value=2.5e-21  Score=145.50  Aligned_cols=130  Identities=35%  Similarity=0.520  Sum_probs=102.4

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-   84 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-   84 (148)
                      +..+.++++    +|||+|++|+|+|..|++.+.+|+++++.+.+..++.+.+++.+   ..||++++++++.++..++ 
T Consensus       139 ~~~~~~~~v----~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~---~~gv~v~~~~~v~~i~~~~~  211 (310)
T 1fl2_A          139 GPLFKGKRV----AVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRS---LKNVDIILNAQTTEVKGDGS  211 (310)
T ss_dssp             GGGGBTCEE----EEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHT---CTTEEEESSEEEEEEEESSS
T ss_pred             HhhcCCCEE----EEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCccHHHHHHHhh---CCCeEEecCCceEEEEcCCC
Confidence            445567777    99999999999999999999999999998887655555444442   3699999998888876431 


Q ss_pred             ----e------------------------------eecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchh
Q psy5231          85 ----T------------------------------VTGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDK  129 (148)
Q Consensus        85 ----~------------------------------~~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~  129 (148)
                          .                              +...+.++ .|+|.+|+.     ++|+.|+||++|||+..+ .++
T Consensus       212 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~-----~~t~~~~vya~GD~~~~~-~~~  285 (310)
T 1fl2_A          212 KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAK-----CETNVKGVFAAGDCTTVP-YKQ  285 (310)
T ss_dssp             SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTT-----CBCSSTTEEECSTTBSCS-SCC
T ss_pred             cEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhccccccCCCcEEcCCC-----CccCCCCEEEeecccCCc-chh
Confidence                0                              00113344 378888988     899999999999999875 357


Q ss_pred             HHHHHHHHHHHHHHHHhhC
Q psy5231         130 QLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       130 ~~~A~~~G~~aA~~i~~~l  148 (148)
                      +..|+.+|+.||.+|.++|
T Consensus       286 ~~~A~~~g~~aa~~i~~~l  304 (310)
T 1fl2_A          286 IIIATGEGAKASLSAFDYL  304 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhHHHHHHHHHHHH
Confidence            8999999999999998875

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.87  E-value=6.7e-22  Score=149.00  Aligned_cols=129  Identities=13%  Similarity=0.175  Sum_probs=99.7

Q ss_pred             hhhhhhhcCCcccceEEEEcCchH-HHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231           3 YEFGILALIKPVIIFTDVIGGGNT-AVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKII   81 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGgG~~-g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~   81 (148)
                      ++.+++.+++++    +|||||.. ++|+|..+++.+.+|+++++.+.+.  +...+.    |++.|+.+++++ +..+.
T Consensus       138 ~~~~~~~~~~~~----~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~--~~~~~~----l~~~g~~~~~~~-v~~~~  206 (304)
T 4fk1_A          138 YCDGWELKDQPL----IIISENEDHTLHMTKLVYNWSTDLVIATNGNELS--QTIMDE----LSNKNIPVITES-IRTLQ  206 (304)
T ss_dssp             HHHSGGGTTSCE----EEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCC--HHHHHH----HHTTTCCEECSC-EEEEE
T ss_pred             ccchhHhcCCce----eeecCCCchhhhHHHHHHhCCceEEEEeccccch--hhhhhh----hhccceeEeeee-EEEee
Confidence            456677888888    88888864 6789999999999999998876553  333333    447899998754 66665


Q ss_pred             cCCe-------------------e------------ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchh
Q psy5231          82 GNNT-------------------V------------TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDK  129 (148)
Q Consensus        82 ~~~~-------------------~------------~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~  129 (148)
                      .++.                   +            ..++++++ |+|.||++     ++||+|+|||+|||++.+ ++|
T Consensus       207 ~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~-----~~Ts~p~IyA~GDv~~~~-~~~  280 (304)
T 4fk1_A          207 GEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDF-----GRTSEKNIYLAGETTTQG-PSS  280 (304)
T ss_dssp             SGGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTT-----CBCSSTTEEECSHHHHTS-CCC
T ss_pred             cCCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcC-----CccCCCCEEEEeccCCCc-chH
Confidence            4321                   0            12466664 88999999     999999999999998765 568


Q ss_pred             HHHHHHHHHHHHHHHHhhC
Q psy5231         130 QLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       130 ~~~A~~~G~~aA~~i~~~l  148 (148)
                      +..|+++|++||.+|++||
T Consensus       281 ~~~A~~~G~~AA~~i~~~L  299 (304)
T 4fk1_A          281 LIIAASQGNKAAIAINSDI  299 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999986

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.86  E-value=1.5e-21  Score=154.49  Aligned_cols=125  Identities=18%  Similarity=0.271  Sum_probs=102.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--------
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--------   85 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--------   85 (148)
                      ++++|||||++|+|+|..++++|.+||++++.+++..  +++..+.+.+.|++.||++++++++.++.++..        
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g~~~  227 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVE  227 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETTEEEETTSCEE
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCCeeeecCCeEE
Confidence            3449999999999999999999999999999887643  566677788888889999999999998876432        


Q ss_pred             ----------------e--ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCcccc--------chhHHHHHHHHH
Q psy5231          86 ----------------V--TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDKQLLALGSGC  138 (148)
Q Consensus        86 ----------------~--~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~~~~A~~~G~  138 (148)
                                      +  ..++++++ |+|.+|++     ++|+.|+|||+|||+..+.        .+....|..+|+
T Consensus       228 ~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~-----~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~  302 (437)
T 4eqs_A          228 HYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDK-----FETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAAS  302 (437)
T ss_dssp             ECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTT-----CBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHH
T ss_pred             eeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCC-----ccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHH
Confidence                            0  12456664 89999999     9999999999999986531        135788999999


Q ss_pred             HHHHHHH
Q psy5231         139 MAALDAQ  145 (148)
Q Consensus       139 ~aA~~i~  145 (148)
                      .||.||.
T Consensus       303 ~~a~ni~  309 (437)
T 4eqs_A          303 IVAEQIA  309 (437)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999986

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.86  E-value=3.6e-21  Score=144.32  Aligned_cols=133  Identities=31%  Similarity=0.511  Sum_probs=107.7

Q ss_pred             hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231           3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      ++.+..+.++++    +|+|+|++|+|+|..|++.+.+|+++++.+.+...+...+++.+   +.||++++++.+.++..
T Consensus       139 ~~~~~~~~~~~v----~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~---~~gv~~~~~~~v~~i~~  211 (315)
T 3r9u_A          139 TCDGFFYKNKEV----AVLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKVKK---NEKIELITSASVDEVYG  211 (315)
T ss_dssp             HHHGGGGTTSEE----EEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHHHHHHH---CTTEEEECSCEEEEEEE
T ss_pred             cccccccCcCEE----EEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHHHHHHh---cCCeEEEeCcEEEEEEc
Confidence            445566677787    99999999999999999999999999998888666666655543   78999999999888754


Q ss_pred             CC----------------e------------------eec-----ceeecC-CeEEecCCCCcccccCCCCCeEEecccC
Q psy5231          83 NN----------------T------------------VTG-----QLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCT  122 (148)
Q Consensus        83 ~~----------------~------------------~~~-----~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~  122 (148)
                      ++                .                  +..     .++++. |++.+|+.     ++|+.|+||++|||+
T Consensus       212 ~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~-----~~t~~~~v~a~GD~~  286 (315)
T 3r9u_A          212 DKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLK-----MQTSVAGLFAAGDLR  286 (315)
T ss_dssp             ETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTT-----CBCSSTTEEECGGGB
T ss_pred             CCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCC-----cccCCCCEEEeeccc
Confidence            32                0                  111     155554 88999997     999999999999998


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         123 RLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       123 ~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +.+ ++++..|+.+|+.||.+|.++|
T Consensus       287 ~~~-~~~~~~A~~~g~~aa~~i~~~l  311 (315)
T 3r9u_A          287 KDA-PKQVICAAGDGAVAALSAMAYI  311 (315)
T ss_dssp             TTC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCc-hhhhhhHHhhHHHHHHHHHHHH
Confidence            644 3689999999999999999875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.86  E-value=3.9e-21  Score=155.75  Aligned_cols=130  Identities=18%  Similarity=0.152  Sum_probs=104.5

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe----
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT----   85 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~----   85 (148)
                      -+.+|++++|||||.+|+|+|..++++|.+||+++|...++. ++++.+.+.+.|++.||.+++++.+.++...+.    
T Consensus       219 l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v  298 (542)
T 4b1b_A          219 LKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILV  298 (542)
T ss_dssp             CSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEE
T ss_pred             cccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEE
Confidence            456788889999999999999999999999999998655543 677888889999999999999999888765321    


Q ss_pred             -------------------------e--e-cceeecC--CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHH
Q psy5231          86 -------------------------V--T-GQLEMND--GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALG  135 (148)
Q Consensus        86 -------------------------~--~-~~~~~~~--g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~  135 (148)
                                               +  . .++.++.  +.+.+|++     ++|++|+|||+|||++.. +...+.|..
T Consensus       299 ~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~-----~~Ts~p~IyAiGDv~~~~-p~La~~A~~  372 (542)
T 4b1b_A          299 EFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHL-----SCTNIPSIFAVGDVAENV-PELAPVAIK  372 (542)
T ss_dssp             EETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTT-----SBCSSTTEEECTTSBTTC-CCCHHHHHH
T ss_pred             EEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEecccc-----ccccCCCeEEeccccCCc-hhHHHHHHH
Confidence                                     0  0 1344442  45678888     999999999999998652 146788899


Q ss_pred             HHHHHHHHHHh
Q psy5231         136 SGCMAALDAQR  146 (148)
Q Consensus       136 ~G~~aA~~i~~  146 (148)
                      +|+.|+.++..
T Consensus       373 eg~~aa~~i~g  383 (542)
T 4b1b_A          373 AGEILARRLFK  383 (542)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhc
Confidence            99999999863

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.86  E-value=5.5e-21  Score=144.76  Aligned_cols=132  Identities=30%  Similarity=0.465  Sum_probs=104.1

Q ss_pred             hhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231           4 EFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus         4 ~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      +.+....++++    +|||+|.+|+|+|..|++.|.+|+++++.+.+...+.+.+++.+   +.||++++++++.++..+
T Consensus       145 ~~~~~~~~~~v----~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~---~~gv~i~~~~~v~~i~~~  217 (325)
T 2q7v_A          145 CDGFFYKGKKV----VVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAFA---NPKMKFIWDTAVEEIQGA  217 (325)
T ss_dssp             HHGGGGTTCEE----EEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHT---CTTEEEECSEEEEEEEES
T ss_pred             CCHHHcCCCEE----EEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHHHHHh---cCCceEecCCceEEEccC
Confidence            34555667777    99999999999999999999999999998877666655555543   579999999988887643


Q ss_pred             C----------------e-----------------e-ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccch
Q psy5231          84 N----------------T-----------------V-TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFID  128 (148)
Q Consensus        84 ~----------------~-----------------~-~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~  128 (148)
                      +                .                 + ...+.++ .|++.+|++     ++|+.|+||++|||+..+ ++
T Consensus       218 ~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~-----~~t~~~~vya~GD~~~~~-~~  291 (325)
T 2q7v_A          218 DSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDE-----IYTNIPMLFAAGDVSDYI-YR  291 (325)
T ss_dssp             SSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBTT-----TBCSSTTEEECSTTTCSS-CC
T ss_pred             CcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhhcccCCCccEecCCC-----CccCCCCEEEeecccCcc-HH
Confidence            1                0                 0 0013344 378889988     999999999999998863 36


Q ss_pred             hHHHHHHHHHHHHHHHHhhC
Q psy5231         129 KQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       129 ~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ++..|..+|+.||.+|.++|
T Consensus       292 ~~~~A~~~g~~aa~~i~~~l  311 (325)
T 2q7v_A          292 QLATSVGAGTRAAMMTERQL  311 (325)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999998764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.86  E-value=7.2e-21  Score=143.05  Aligned_cols=132  Identities=35%  Similarity=0.517  Sum_probs=103.7

Q ss_pred             hhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231           4 EFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus         4 ~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      +......++++    +|||+|++|+|+|..|++.|.+|+++++.+.+..++.+.+++.+   +.||++++++.+.++..+
T Consensus       136 ~~~~~~~~~~v----~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~---~~gv~v~~~~~v~~i~~~  208 (311)
T 2q0l_A          136 CDGFFYKNKEV----AVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKN---NDKIEFLTPYVVEEIKGD  208 (311)
T ss_dssp             HHGGGGTTSEE----EEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHHHHHT---CTTEEEETTEEEEEEEEE
T ss_pred             CChhhcCCCEE----EEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHHHHhh---CCCeEEEeCCEEEEEECC
Confidence            33445567777    99999999999999999999999999998887666666555543   579999999888776532


Q ss_pred             --------------C---e------------------eec-c----eeec-CCeEEecCCCCcccccCCCCCeEEecccC
Q psy5231          84 --------------N---T------------------VTG-Q----LEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCT  122 (148)
Q Consensus        84 --------------~---~------------------~~~-~----~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~  122 (148)
                                    +   .                  +.. +    +.++ .|++.+|++     ++|+.|+||++|||+
T Consensus       209 ~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~-----~~t~~~~vya~GD~~  283 (311)
T 2q0l_A          209 ASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS-----MKTNVQGLFAAGDIR  283 (311)
T ss_dssp             TTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTT-----CBCSSTTEEECSTTB
T ss_pred             CCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCc-----cccCCCCeEEccccc
Confidence                          1   0                  011 1    4455 378889988     999999999999998


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         123 RLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       123 ~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ..+ ++++..|+.+|+.||.+|.++|
T Consensus       284 ~~~-~~~~~~A~~~g~~aa~~i~~~l  308 (311)
T 2q0l_A          284 IFA-PKQVVCAASDGATAALSVISYL  308 (311)
T ss_dssp             TTC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccc-hHHHHHHHHhHHHHHHHHHHHH
Confidence            863 3689999999999999998875

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.86  E-value=6.5e-21  Score=145.11  Aligned_cols=132  Identities=37%  Similarity=0.617  Sum_probs=103.4

Q ss_pred             hhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231           5 FGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      ....+.++++    +|||+|.+|+|+|..|++.|.+|++++|.+.+...+.+.+++.+   +.||++++++++.++..++
T Consensus       149 ~~~~~~~~~v----~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~~~~~---~~gV~v~~~~~v~~i~~~~  221 (335)
T 2a87_A          149 DGFFFRDQDI----AVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRARN---NDKIRFLTNHTVVAVDGDT  221 (335)
T ss_dssp             HGGGGTTCEE----EEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHHHHHH---CTTEEEECSEEEEEEECSS
T ss_pred             chhhcCCCEE----EEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHHHHhc---cCCcEEEeCceeEEEecCC
Confidence            3444567777    99999999999999999999999999998877554444444433   6899999999888876432


Q ss_pred             ---------------e-------------------eecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchh
Q psy5231          85 ---------------T-------------------VTGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDK  129 (148)
Q Consensus        85 ---------------~-------------------~~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~  129 (148)
                                     .                   +..++.++ +|++.+|+.+    ++|+.|+||++|||+..+ +++
T Consensus       222 ~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~----~~t~~~~iya~GD~~~~~-~~~  296 (335)
T 2a87_A          222 TVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRT----TSTSLPGVFAAGDLVDRT-YRQ  296 (335)
T ss_dssp             SCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBTTBCBCTTSCBCCSTTS----SBCSSTTEEECGGGTCCS-CCC
T ss_pred             cEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhcccccCCCccEEeCCCC----CccCCCCEEEeeecCCcc-HHH
Confidence                           0                   01134455 4788888864    799999999999999864 468


Q ss_pred             HHHHHHHHHHHHHHHHhhC
Q psy5231         130 QLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       130 ~~~A~~~G~~aA~~i~~~l  148 (148)
                      +..|+.+|+.||.+|.++|
T Consensus       297 ~~~A~~~g~~aA~~i~~~l  315 (335)
T 2a87_A          297 AVTAAGSGCAAAIDAERWL  315 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHh
Confidence            8999999999999998875

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.85  E-value=1.4e-20  Score=142.34  Aligned_cols=128  Identities=36%  Similarity=0.600  Sum_probs=102.6

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC---
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN---   84 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~---   84 (148)
                      .+.++++    +|||+|++|+|+|..|++.|.+|+++++.+.+.....+.+++.+   ..||++++++.+.++..++   
T Consensus       170 ~~~~~~v----~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~~~~~l~~---~~gv~i~~~~~v~~i~~~~~~~  242 (338)
T 3itj_A          170 IFRNKPL----AVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEK---NEKIEILYNTVALEAKGDGKLL  242 (338)
T ss_dssp             GGTTSEE----EEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHH---CTTEEEECSEEEEEEEESSSSE
T ss_pred             hcCCCEE----EEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCCHHHHHHHHh---cCCeEEeecceeEEEEcccCcE
Confidence            4567777    99999999999999999999999999998887665666666653   4599999999998886543   


Q ss_pred             --e------------------------------eecceeec-CCeEEe-cCCCCcccccCCCCCeEEecccCccccchhH
Q psy5231          85 --T------------------------------VTGQLEMN-DGYIKT-KLNKKTGYTSTNISGVFCRWRCTRLYFIDKQ  130 (148)
Q Consensus        85 --~------------------------------~~~~~~~~-~g~i~v-d~~~~~~~~~t~~~~vya~GD~~~~~~~~~~  130 (148)
                        .                              +..++.++ .|++.+ |..     ++|+.|+||++|||+..+ ++++
T Consensus       243 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~~~-----~~t~~~~vya~GD~~~~~-~~~~  316 (338)
T 3itj_A          243 NALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGS-----SLTSVPGFFAAGDVQDSK-YRQA  316 (338)
T ss_dssp             EEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCTTS-----SBCSSTTEEECGGGGCSS-CCCH
T ss_pred             EEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcCcc-----cccCCCCEEEeeccCCCC-ccce
Confidence              1                              11134455 477775 555     999999999999999754 3689


Q ss_pred             HHHHHHHHHHHHHHHhhC
Q psy5231         131 LLALGSGCMAALDAQRYL  148 (148)
Q Consensus       131 ~~A~~~G~~aA~~i~~~l  148 (148)
                      ..|+.+|+.||.+|.++|
T Consensus       317 ~~A~~~g~~aa~~i~~~l  334 (338)
T 3itj_A          317 ITSAGSGCMAALDAEKYL  334 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             eeehhhhHHHHHHHHHHH
Confidence            999999999999999875

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.85  E-value=1.2e-20  Score=143.07  Aligned_cols=128  Identities=39%  Similarity=0.644  Sum_probs=100.8

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC----
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN----   84 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~----   84 (148)
                      ..++++    +|||+|.+|+|+|..|++.|.+|+++++.+.+...+.+.+++.   ++.||++++++.+.++..++    
T Consensus       157 ~~~~~v----~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~---~~~gv~i~~~~~v~~i~~~~~~~~  229 (333)
T 1vdc_A          157 FRNKPL----AVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRAL---SNPKIDVIWNSSVVEAYGDGERDV  229 (333)
T ss_dssp             GTTSEE----EEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHH---TCTTEEEECSEEEEEEEESSSSSS
T ss_pred             cCCCeE----EEECCChHHHHHHHHHHhcCCeEEEEecCCcCCccHHHHHHHH---hCCCeeEecCCceEEEeCCCCccc
Confidence            456666    9999999999999999999999999999887765555444443   37899999998888776432    


Q ss_pred             ---e-----------------------------e-ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhH
Q psy5231          85 ---T-----------------------------V-TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQ  130 (148)
Q Consensus        85 ---~-----------------------------~-~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~  130 (148)
                         .                             + ..++.++ +|++.+|+.+    ++|+.|+||++|||+..+ .+++
T Consensus       230 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~----~~t~~~~vya~GD~~~~~-~~~~  304 (333)
T 1vdc_A          230 LGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGT----TQTSVPGVFAAGDVQDKK-YRQA  304 (333)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTS----CBCSSTTEEECGGGGCSS-CCCH
T ss_pred             eeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhccccccCCCCEEechhh----cccCCCCEEEeeeccCCC-chhH
Confidence               1                             0 1134444 4788888864    689999999999998864 4689


Q ss_pred             HHHHHHHHHHHHHHHhhC
Q psy5231         131 LLALGSGCMAALDAQRYL  148 (148)
Q Consensus       131 ~~A~~~G~~aA~~i~~~l  148 (148)
                      ..|+.+|+.||.+|.++|
T Consensus       305 ~~A~~~g~~aa~~i~~~l  322 (333)
T 1vdc_A          305 ITAAGTGCMAALDAEHYL  322 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHH
Confidence            999999999999998875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.85  E-value=6.6e-21  Score=153.70  Aligned_cols=130  Identities=34%  Similarity=0.508  Sum_probs=103.9

Q ss_pred             hhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhc-CCcEEEcCceEEEEecC
Q psy5231           5 FGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNE-GKIDIKLKHIVHKIIGN   83 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~-~~v~i~~~~~v~~i~~~   83 (148)
                      .+..+.++++    +|||||++|+|+|..|++.+.+||++++.+.+..++.+.+++.    + .||++++++.+.++.++
T Consensus       349 ~~~~~~~k~V----~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~~~l~----~~~gV~v~~~~~v~~i~~~  420 (521)
T 1hyu_A          349 DGPLFKGKRV----AVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVR----SLKNVDIILNAQTTEVKGD  420 (521)
T ss_dssp             CGGGGBTSEE----EEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHHHHHT----TCTTEEEECSEEEEEEEEC
T ss_pred             chhhcCCCeE----EEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHHHHHh----cCCCcEEEeCCEEEEEEcC
Confidence            4455677787    9999999999999999999999999999888776544444443    5 69999999988887653


Q ss_pred             C-----e------------------------------eecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccc
Q psy5231          84 N-----T------------------------------VTGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFI  127 (148)
Q Consensus        84 ~-----~------------------------------~~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~  127 (148)
                      +     .                              +...+.++ .|+|.+|+.     ++|+.|+|||+|||+..+ +
T Consensus       421 ~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~-----~~ts~p~VfA~GD~~~~~-~  494 (521)
T 1hyu_A          421 GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAK-----CETSVKGVFAAGDCTTVP-Y  494 (521)
T ss_dssp             SSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTT-----CBCSSTTEEECSTTBCCS-S
T ss_pred             CCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCC-----CCCCCCCEEEeecccCCC-c
Confidence            1     0                              00123344 378889988     999999999999999876 4


Q ss_pred             hhHHHHHHHHHHHHHHHHhhC
Q psy5231         128 DKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       128 ~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +++..|+++|..||.+|.++|
T Consensus       495 ~~~~~A~~~g~~aa~~i~~~L  515 (521)
T 1hyu_A          495 KQIIIATGEGAKASLSAFDYL  515 (521)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeehHHhHHHHHHHHHHHH
Confidence            689999999999999999875

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.85  E-value=1.5e-20  Score=142.09  Aligned_cols=129  Identities=28%  Similarity=0.416  Sum_probs=102.9

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-   84 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-   84 (148)
                      +..+.++++    +|||+|++|+|+|..|++++.+|+++++.+.+...+.+.+++.    +.||++++++++.++..++ 
T Consensus       150 ~~~~~~~~v----~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~l~----~~gv~i~~~~~v~~i~~~~~  221 (319)
T 3cty_A          150 GYLFKGKRV----VTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQEIK----KRNIPYIMNAQVTEIVGDGK  221 (319)
T ss_dssp             GGGGBTSEE----EEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHHHHHHH----HTTCCEECSEEEEEEEESSS
T ss_pred             hhhcCCCeE----EEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCCHHHHHHHh----cCCcEEEcCCeEEEEecCCc
Confidence            344566777    9999999999999999999999999999887766555555555    5899999998888775431 


Q ss_pred             ----------------e-----------------ee--cceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccch
Q psy5231          85 ----------------T-----------------VT--GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFID  128 (148)
Q Consensus        85 ----------------~-----------------~~--~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~  128 (148)
                                      .                 +.  .++++++ |++.+|+.     ++|+.|+||++|||+..+ ++
T Consensus       222 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~-----~~t~~~~vya~GD~~~~~-~~  295 (319)
T 3cty_A          222 KVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSR-----QRTSVPGVYAAGDVTSGN-FA  295 (319)
T ss_dssp             SEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTT-----CBCSSTTEEECSTTBTTC-CC
T ss_pred             eEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCC-----CccCCCCEEEeecccCcc-hh
Confidence                            0                 00  1244453 78889988     999999999999999864 36


Q ss_pred             hHHHHHHHHHHHHHHHHhhC
Q psy5231         129 KQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       129 ~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ++..|+.+|+.||.+|.++|
T Consensus       296 ~~~~A~~~g~~aa~~i~~~l  315 (319)
T 3cty_A          296 QIASAVGDGCKAALSLYSDS  315 (319)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHh
Confidence            88999999999999998875

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.84  E-value=2.9e-20  Score=141.08  Aligned_cols=131  Identities=27%  Similarity=0.393  Sum_probs=105.7

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC-----
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN-----   83 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~-----   83 (148)
                      +.++++    +|||+|.+|+|+|..|++.|.+|++++|.+.+...+...+++.+.|++.||++++++.+.++..+     
T Consensus       150 ~~~~~v----~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~  225 (335)
T 2zbw_A          150 FQGKRV----LIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEGDERVRW  225 (335)
T ss_dssp             GTTCEE----EEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEE
T ss_pred             cCCCEE----EEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHHHHhccccCCeEEecCCcceeEccCCCeeE
Confidence            345666    99999999999999999999999999998888766777788888888889999999888777543     


Q ss_pred             --------C--e------------------ee--cceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc-chhHHH
Q psy5231          84 --------N--T------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF-IDKQLL  132 (148)
Q Consensus        84 --------~--~------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~-~~~~~~  132 (148)
                              +  .                  +.  .+++++.|++.+|+.     ++|+.|+||++|||+..++ .+.+..
T Consensus       226 v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~-----~~t~~~~vya~GD~~~~~~~~~~~~~  300 (335)
T 2zbw_A          226 AVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTT-----MATSIPGVYACGDIVTYPGKLPLIVL  300 (335)
T ss_dssp             EEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTT-----CBCSSTTEEECSTTEECTTCCCCHHH
T ss_pred             EEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCC-----CCCCCCCEEEeccccccCcchhhhhh
Confidence                    1  1                  00  123344688999998     9999999999999986421 257889


Q ss_pred             HHHHHHHHHHHHHhhC
Q psy5231         133 ALGSGCMAALDAQRYL  148 (148)
Q Consensus       133 A~~~G~~aA~~i~~~l  148 (148)
                      |..+|..||.+|.++|
T Consensus       301 A~~~g~~aa~~i~~~l  316 (335)
T 2zbw_A          301 GFGEAAIAANHAAAYA  316 (335)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHh
Confidence            9999999999998764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.84  E-value=2.6e-20  Score=139.99  Aligned_cols=134  Identities=31%  Similarity=0.507  Sum_probs=106.7

Q ss_pred             hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231           3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      ++.+..+.++++    +|+|+|++|+|+|..|++.+.+|+++++.+.+..++...+++.+   ..||++++++.+.++..
T Consensus       146 ~~~~~~~~~~~v----~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~---~~gv~~~~~~~v~~i~~  218 (323)
T 3f8d_A          146 VADAPLFKNRVV----AVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKK---KPNVEFVLNSVVKEIKG  218 (323)
T ss_dssp             HHHGGGGTTCEE----EEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHHHHT---CTTEEEECSEEEEEEEE
T ss_pred             cCCHhHcCCCEE----EEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHHHHh---CCCcEEEeCCEEEEEec
Confidence            344556677787    99999999999999999999999999999888776666666654   56999999998887764


Q ss_pred             CCe---------------------------------e--ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccc-
Q psy5231          83 NNT---------------------------------V--TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY-  125 (148)
Q Consensus        83 ~~~---------------------------------~--~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~-  125 (148)
                      ++.                                 +  ..+++++ .|++.+|+.     ++|+.|+||++|||+..+ 
T Consensus       219 ~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~-----~~t~~~~vya~GD~~~~~~  293 (323)
T 3f8d_A          219 DKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEW-----MRTSVPGVFAAGDCTSAWL  293 (323)
T ss_dssp             SSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTT-----CBCSSTTEEECSTTBSTTT
T ss_pred             cCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCC-----ceecCCCEEEcceecCCCC
Confidence            320                                 0  0134455 388999998     999999999999999851 


Q ss_pred             cchhHHHHHHHHHHHHHHHHhhC
Q psy5231         126 FIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       126 ~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      .++++..|+.+|+.||.+|.++|
T Consensus       294 ~~~~~~~A~~~g~~aa~~i~~~l  316 (323)
T 3f8d_A          294 GFRQVITAVAQGAVAATSAYRYV  316 (323)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeehhhHHHHHHHHHHHHH
Confidence            02689999999999999998864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.83  E-value=3.3e-20  Score=147.35  Aligned_cols=125  Identities=15%  Similarity=0.110  Sum_probs=102.4

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--------   84 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--------   84 (148)
                      +++++|||||.+|+|+|..|+++|.+||++++.+++.  .+++..+.+.+.|++.||++++++++.++..++        
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~  250 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVT  250 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEE
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEE
Confidence            4556999999999999999999999999999987764  256777778888888999999999988875321        


Q ss_pred             -----e------------------e--ec--ceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231          85 -----T------------------V--TG--QLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS  136 (148)
Q Consensus        85 -----~------------------~--~~--~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~  136 (148)
                           .                  +  ..  ++++++ |+|.||++     ++|+.|+|||+|||++.+  +....|..+
T Consensus       251 ~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-----~~t~~~~IyA~GD~~~~~--~~~~~A~~~  323 (464)
T 2a8x_A          251 KDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDY-----MRTNVGHIYAIGDVNGLL--QLAHVAEAQ  323 (464)
T ss_dssp             SSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTT-----SBCSSTTEEECGGGGCSS--CSHHHHHHH
T ss_pred             cCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcC-----CccCCCCEEEeECcCCCc--cCHHHHHHH
Confidence                 1                  0  00  244453 88999999     999999999999999876  578899999


Q ss_pred             HHHHHHHHHh
Q psy5231         137 GCMAALDAQR  146 (148)
Q Consensus       137 G~~aA~~i~~  146 (148)
                      |+.||.+|..
T Consensus       324 g~~aa~~i~g  333 (464)
T 2a8x_A          324 GVVAAETIAG  333 (464)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhcC
Confidence            9999999864

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.83  E-value=5.2e-20  Score=146.59  Aligned_cols=126  Identities=17%  Similarity=0.110  Sum_probs=102.9

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEec--CC-----
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIG--NN-----   84 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~--~~-----   84 (148)
                      .+++++|||||.+|+|+|..|+++|.+||++++.+.+..  +++..+.+.+.|++.||++++++++.++..  ++     
T Consensus       182 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  261 (478)
T 1v59_A          182 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEI  261 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEE
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEE
Confidence            345669999999999999999999999999999877643  566777888888889999999998888764  21     


Q ss_pred             --------e----------e--------e------cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHH
Q psy5231          85 --------T----------V--------T------GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQL  131 (148)
Q Consensus        85 --------~----------~--------~------~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~  131 (148)
                              .          +        .      .+++++ +|+|.||++     ++|+.|+|||+|||+..+  ....
T Consensus       262 ~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~t~~~~IyA~GD~~~~~--~~~~  334 (478)
T 1v59_A          262 VVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQ-----FNSKFPHIKVVGDVTFGP--MLAH  334 (478)
T ss_dssp             EEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTT-----SBCSSTTEEECGGGSSSC--CCHH
T ss_pred             EEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcC-----CccCCCCEEEeeccCCCc--ccHH
Confidence                    1          0        0      123445 478999998     999999999999999876  5788


Q ss_pred             HHHHHHHHHHHHHHh
Q psy5231         132 LALGSGCMAALDAQR  146 (148)
Q Consensus       132 ~A~~~G~~aA~~i~~  146 (148)
                      .|..+|+.||.+|..
T Consensus       335 ~A~~~g~~aa~~i~~  349 (478)
T 1v59_A          335 KAEEEGIAAVEMLKT  349 (478)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999999864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.83  E-value=3.4e-20  Score=148.04  Aligned_cols=124  Identities=15%  Similarity=0.152  Sum_probs=102.3

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC---------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN---------   83 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~---------   83 (148)
                      +++++|||||.+|+|+|..|+++|.+||++++.+++..  +++..+.+.+.|++.||++++++++.++..+         
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~  264 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFE  264 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEe
Confidence            45669999999999999999999999999999877643  5677788888888999999999988877532         


Q ss_pred             -----Ce------------------e--ec--ceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHH
Q psy5231          84 -----NT------------------V--TG--QLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALG  135 (148)
Q Consensus        84 -----~~------------------~--~~--~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~  135 (148)
                           +.                  +  ..  ++++++ |+|.||++     ++|+.|+|||+|||++.+  +....|..
T Consensus       265 ~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-----~~t~~~~IyA~GD~~~~~--~l~~~A~~  337 (482)
T 1ojt_A          265 GANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQ-----MRTNVPHIYAIGDIVGQP--MLAHKAVH  337 (482)
T ss_dssp             SSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTT-----SBCSSTTEEECGGGTCSS--CCHHHHHH
T ss_pred             ccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCC-----cccCCCCEEEEEcccCCC--ccHHHHHH
Confidence                 11                  1  01  344454 88999998     999999999999999876  57889999


Q ss_pred             HHHHHHHHHH
Q psy5231         136 SGCMAALDAQ  145 (148)
Q Consensus       136 ~G~~aA~~i~  145 (148)
                      +|+.||.+|.
T Consensus       338 ~g~~aa~~i~  347 (482)
T 1ojt_A          338 EGHVAAENCA  347 (482)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999999985

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.83  E-value=6.4e-20  Score=145.36  Aligned_cols=124  Identities=17%  Similarity=0.173  Sum_probs=101.4

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--------   84 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--------   84 (148)
                      +++++|||||++|+|+|..|+++|.+||++++.+.+.  .++...+.+.+.|++.||++++++++.++..++        
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~  249 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYE  249 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEE
Confidence            4566999999999999999999999999999987763  256677778888888999999998888775321        


Q ss_pred             ---e--------------------e--ec--ceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231          85 ---T--------------------V--TG--QLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS  136 (148)
Q Consensus        85 ---~--------------------~--~~--~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~  136 (148)
                         .                    +  ..  +++++ +|+|.||++     ++|+.|+|||+|||+..+  +....|..+
T Consensus       250 ~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-----~~t~~~~Iya~GD~~~~~--~~~~~A~~~  322 (455)
T 1ebd_A          250 ANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQ-----CRTSVPNIFAIGDIVPGP--ALAHKASYE  322 (455)
T ss_dssp             ETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTT-----CBCSSTTEEECGGGSSSC--CCHHHHHHH
T ss_pred             eCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCC-----cccCCCCEEEEeccCCCc--ccHHHHHHH
Confidence               1                    0  01  24445 378999998     999999999999999876  578899999


Q ss_pred             HHHHHHHHH
Q psy5231         137 GCMAALDAQ  145 (148)
Q Consensus       137 G~~aA~~i~  145 (148)
                      |+.||.+|.
T Consensus       323 g~~aa~~i~  331 (455)
T 1ebd_A          323 GKVAAEAIA  331 (455)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999999985

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.83  E-value=7.9e-20  Score=137.91  Aligned_cols=132  Identities=26%  Similarity=0.369  Sum_probs=104.3

Q ss_pred             hhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231           4 EFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus         4 ~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      +....+.++++    +|||+|.+|+|+|..|++.+.+|+++++.+.+...+...+++.    +.||++++++.+.++..+
T Consensus       147 ~~~~~~~~~~v----~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~l~----~~gv~~~~~~~v~~i~~~  218 (332)
T 3lzw_A          147 DDLQKFAGRRV----AILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLH----ASKVNVLTPFVPAELIGE  218 (332)
T ss_dssp             SCGGGGBTCEE----EEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHHHH----HSSCEEETTEEEEEEECS
T ss_pred             CCHHHcCCCEE----EEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHHHh----cCCeEEEeCceeeEEecC
Confidence            34445567777    9999999999999999999999999999888766555555544    689999999999888754


Q ss_pred             Ce---------------------------------ee--cceeecCCeEEecCCCCcccccCCCCCeEEecccCccc-cc
Q psy5231          84 NT---------------------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY-FI  127 (148)
Q Consensus        84 ~~---------------------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~-~~  127 (148)
                      +.                                 +.  .++.++.|++.+|++     ++|+.|+|||+|||+..+ .+
T Consensus       219 ~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~-----~~t~~~~vya~GD~~~~~~~~  293 (332)
T 3lzw_A          219 DKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKST-----METNIEGFFAAGDICTYEGKV  293 (332)
T ss_dssp             SSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTT-----SBCSSTTEEECGGGEECTTCC
T ss_pred             CceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCC-----CceecCCEEEccceecCCCCc
Confidence            31                                 00  133445689999998     999999999999998431 13


Q ss_pred             hhHHHHHHHHHHHHHHHHhhC
Q psy5231         128 DKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       128 ~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +++..|..+|..||.+|.++|
T Consensus       294 ~~~~~A~~~g~~aa~~i~~~l  314 (332)
T 3lzw_A          294 NLIASGFGEAPTAVNNAKAYM  314 (332)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEeeehhhHHHHHHHHHHhh
Confidence            688999999999999998764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.83  E-value=1e-19  Score=144.84  Aligned_cols=126  Identities=17%  Similarity=0.162  Sum_probs=103.4

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-------   84 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-------   84 (148)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+.+..  ++...+.+.+.|++.||++++++++.++..++       
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~  258 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKF  258 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEE
Confidence            345569999999999999999999999999999877643  56777888888888999999999998876321       


Q ss_pred             ------e-------------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHH
Q psy5231          85 ------T-------------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALG  135 (148)
Q Consensus        85 ------~-------------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~  135 (148)
                            .                   +   ..++.++ .|+|.+|+.     ++|+.|+|||+|||++.+  .....|..
T Consensus       259 ~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-----~~t~~~~Iya~GD~~~~~--~~~~~A~~  331 (476)
T 3lad_A          259 VDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDY-----CATSVPGVYAIGDVVRGA--MLAHKASE  331 (476)
T ss_dssp             ESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTT-----SBCSSTTEEECGGGSSSC--CCHHHHHH
T ss_pred             EeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCC-----cccCCCCEEEEEccCCCc--ccHHHHHH
Confidence                  1                   0   0134445 478999998     999999999999999766  57899999


Q ss_pred             HHHHHHHHHHh
Q psy5231         136 SGCMAALDAQR  146 (148)
Q Consensus       136 ~G~~aA~~i~~  146 (148)
                      +|+.||.+|..
T Consensus       332 ~g~~aa~~i~g  342 (476)
T 3lad_A          332 EGVVVAERIAG  342 (476)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999863

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.83  E-value=1.1e-19  Score=145.56  Aligned_cols=126  Identities=18%  Similarity=0.157  Sum_probs=102.6

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--------   83 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--------   83 (148)
                      .+++++|||||.+|+|+|..|+++|.+||++++.+++..  +++..+.+.+.|++. |++++++.+.++..+        
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~  251 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIY  251 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEE
Confidence            345569999999999999999999999999999887643  577778888888777 999999998887532        


Q ss_pred             ----C--e------------------e--e--cceeec-CCeEEec-CCCCcccccCCCCCeEEecccCccccchhHHHH
Q psy5231          84 ----N--T------------------V--T--GQLEMN-DGYIKTK-LNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLA  133 (148)
Q Consensus        84 ----~--~------------------~--~--~~~~~~-~g~i~vd-~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A  133 (148)
                          +  .                  +  .  .+++++ +|++.+| +.     ++|+.|+|||+|||++.+  +....|
T Consensus       252 ~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~-----~~t~~~~IyA~GD~~~~~--~~~~~A  324 (492)
T 3ic9_A          252 FDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELT-----LQTSVDHIFVAGDANNTL--TLLHEA  324 (492)
T ss_dssp             ECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTT-----CBCSSTTEEECGGGGTSS--CSHHHH
T ss_pred             EeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECccc-----ccCCCCCEEEEEecCCCC--ccHHHH
Confidence                1  1                  0  0  134455 4888899 77     999999999999999876  578899


Q ss_pred             HHHHHHHHHHHHhh
Q psy5231         134 LGSGCMAALDAQRY  147 (148)
Q Consensus       134 ~~~G~~aA~~i~~~  147 (148)
                      ..+|+.||.+|..+
T Consensus       325 ~~~g~~aa~~i~~~  338 (492)
T 3ic9_A          325 ADDGKVAGTNAGAY  338 (492)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999999999763

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.83  E-value=5.4e-20  Score=145.81  Aligned_cols=126  Identities=17%  Similarity=0.228  Sum_probs=103.0

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C-e---
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N-T---   85 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~-~---   85 (148)
                      .+++++|||||.+|+|+|..|+++|.+|+++++.+.+..  ++...+.+.+.|++.||++++++++.++..+  + .   
T Consensus       166 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~  245 (450)
T 1ges_A          166 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLE  245 (450)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEE
Confidence            345669999999999999999999999999999876532  5667777888888899999999999888753  1 1   


Q ss_pred             ------------------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231          86 ------------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG  137 (148)
Q Consensus        86 ------------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G  137 (148)
                                              + .  .+++++ +|+|.||++     ++|+.|+|||+|||++.+  .....|..+|
T Consensus       246 ~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~-----~~t~~~~IyA~GD~~~~~--~~~~~A~~~g  318 (450)
T 1ges_A          246 LEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKY-----QNTNIEGIYAVGDNTGAV--ELTPVAVAAG  318 (450)
T ss_dssp             ETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTT-----SBCSSTTEEECSGGGTSC--CCHHHHHHHH
T ss_pred             ECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCC-----CccCCCCEEEEeccCCCC--ccHHHHHHHH
Confidence                                    0 0  024455 488999998     999999999999998765  5788999999


Q ss_pred             HHHHHHHHh
Q psy5231         138 CMAALDAQR  146 (148)
Q Consensus       138 ~~aA~~i~~  146 (148)
                      +.||.+|..
T Consensus       319 ~~aa~~i~~  327 (450)
T 1ges_A          319 RRLSERLFN  327 (450)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            999999863

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.83  E-value=7.5e-20  Score=145.63  Aligned_cols=126  Identities=15%  Similarity=0.086  Sum_probs=102.9

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN------   84 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~------   84 (148)
                      .+++++|||||++|+|+|..|++.|.+||++++.+.+..   +++..+.+.+.|++.||++++++++.++..++      
T Consensus       177 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v  256 (474)
T 1zmd_A          177 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDV  256 (474)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEE
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEE
Confidence            345669999999999999999999999999999877643   56777788888888999999999888775321      


Q ss_pred             ----------e------------------e--e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHH
Q psy5231          85 ----------T------------------V--T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQL  131 (148)
Q Consensus        85 ----------~------------------~--~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~  131 (148)
                                .                  +  .  .+++++ +|+|.||++     ++|+.|+|||+|||+..+  ....
T Consensus       257 ~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~t~~~~IyA~GD~~~~~--~~~~  329 (474)
T 1zmd_A          257 SIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTR-----FQTKIPNIYAIGDVVAGP--MLAH  329 (474)
T ss_dssp             EEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTT-----CBCSSTTEEECGGGSSSC--CCHH
T ss_pred             EEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcC-----CccCCCCEEEeeecCCCC--ccHH
Confidence                      0                  0  0  024445 378999998     999999999999999876  5788


Q ss_pred             HHHHHHHHHHHHHHh
Q psy5231         132 LALGSGCMAALDAQR  146 (148)
Q Consensus       132 ~A~~~G~~aA~~i~~  146 (148)
                      .|..+|+.||.+|..
T Consensus       330 ~A~~~g~~aa~~i~~  344 (474)
T 1zmd_A          330 KAEDEGIICVEGMAG  344 (474)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999863

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.83  E-value=9.8e-20  Score=145.99  Aligned_cols=126  Identities=17%  Similarity=0.160  Sum_probs=103.7

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhc---CCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC---e
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNI---AKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN---T   85 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~---~   85 (148)
                      .+++++|||||.+|+|+|..|+++   |.+||++++.+.+..  +++..+.+.+.|++.||++++++.+.++..++   .
T Consensus       190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~  269 (495)
T 2wpf_A          190 PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSK  269 (495)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceE
Confidence            345669999999999999999999   999999999877532  56777788888888999999999999887531   1


Q ss_pred             ---------------------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHH
Q psy5231          86 ---------------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLAL  134 (148)
Q Consensus        86 ---------------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~  134 (148)
                                                 + .  .+++++ +|+|.||++     ++|+.|+|||+|||++.+  ..+..|.
T Consensus       270 ~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~-----~~t~~~~IyA~GD~~~~~--~l~~~A~  342 (495)
T 2wpf_A          270 HVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEF-----SRTNVPNIYAIGDITDRL--MLTPVAI  342 (495)
T ss_dssp             EEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTT-----CBCSSTTEEECGGGGCSC--CCHHHHH
T ss_pred             EEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCC-----CccCCCCEEEEeccCCCc--cCHHHHH
Confidence                                       0 0  124455 478999998     999999999999999765  5788999


Q ss_pred             HHHHHHHHHHHh
Q psy5231         135 GSGCMAALDAQR  146 (148)
Q Consensus       135 ~~G~~aA~~i~~  146 (148)
                      .+|+.||.+|..
T Consensus       343 ~~g~~aa~~i~g  354 (495)
T 2wpf_A          343 NEGAALVDTVFG  354 (495)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcC
Confidence            999999999863

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=99.83  E-value=1.1e-19  Score=145.32  Aligned_cols=127  Identities=25%  Similarity=0.370  Sum_probs=102.2

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------   85 (148)
                      +++++|||||.+|+|+|..|+++|.+||++++.+.+..   ++++.+.+.+.|++.||++++++++.++..++.      
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~v~~v~~  273 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIIT  273 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETCCEEEEECSSSCCEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCCEEEEEEcCCcEEEEEE
Confidence            34459999999999999999999999999999877632   567778888888899999999999988865321      


Q ss_pred             ---------------------e-ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc--------chhHHHHH
Q psy5231          86 ---------------------V-TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDKQLLAL  134 (148)
Q Consensus        86 ---------------------~-~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~~~~A~  134 (148)
                                           + ...++++ +|+|.||++     ++|+.|+|||+|||+..+.        .+.+..|.
T Consensus       274 ~g~~i~~D~Vi~a~G~~p~~~ll~~~l~~~~~G~I~Vd~~-----~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~  348 (490)
T 2bc0_A          274 DKNEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKR-----QETSIPGVYAIGDCATIYDNATRDTNYIALASNAV  348 (490)
T ss_dssp             SSCEEECSEEEECCCEEECCGGGTTCSCBCTTSCBCCCTT-----CBCSSTTEEECGGGBCEEETTTTEEECCCCHHHHH
T ss_pred             CCcEEECCEEEECCCCCcChHHHHhhhccCCCCCEEECCC-----cccCCCCEEEeeeeEEeccccCCceeecccHHHHH
Confidence                                 0 1113444 488999998     9999999999999987420        14688999


Q ss_pred             HHHHHHHHHHHh
Q psy5231         135 GSGCMAALDAQR  146 (148)
Q Consensus       135 ~~G~~aA~~i~~  146 (148)
                      .+|+.||.+|..
T Consensus       349 ~qg~~aa~~i~g  360 (490)
T 2bc0_A          349 RTGIVAAHNACG  360 (490)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcC
Confidence            999999999863

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.82  E-value=7e-20  Score=145.50  Aligned_cols=126  Identities=19%  Similarity=0.144  Sum_probs=102.4

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-------   84 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-------   84 (148)
                      .+++++|||||.+|+|+|..|++.|.+||++++.+.+.  .++.+.+.+.+.|++.||++++++++.++..++       
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~  255 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTV  255 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEE
Confidence            34566999999999999999999999999999987764  256777788888888999999998888775321       


Q ss_pred             --------e------------------e--ec--ceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHH
Q psy5231          85 --------T------------------V--TG--QLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLA  133 (148)
Q Consensus        85 --------~------------------~--~~--~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A  133 (148)
                              .                  +  ..  ++++++ |+|.||++     ++|+.|+|||+|||++.+  +....|
T Consensus       256 ~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-----~~t~~~~Iya~GD~~~~~--~~~~~A  328 (470)
T 1dxl_A          256 EPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNER-----FSTNVSGVYAIGDVIPGP--MLAHKA  328 (470)
T ss_dssp             EESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTT-----CBCSSTTEEECSTTSSSC--CCHHHH
T ss_pred             EecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcC-----CccCCCCEEEEeccCCCC--ccHHHH
Confidence                    1                  0  01  244443 78999998     999999999999999876  578899


Q ss_pred             HHHHHHHHHHHHh
Q psy5231         134 LGSGCMAALDAQR  146 (148)
Q Consensus       134 ~~~G~~aA~~i~~  146 (148)
                      ..+|+.||.+|..
T Consensus       329 ~~~g~~aa~~i~g  341 (470)
T 1dxl_A          329 EEDGVACVEYLAG  341 (470)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999999863

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.82  E-value=1.4e-19  Score=144.90  Aligned_cols=126  Identities=17%  Similarity=0.206  Sum_probs=103.7

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhc---CCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC---e
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNI---AKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN---T   85 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~---~   85 (148)
                      .+++++|||||.+|+|+|..|+++   |.+||++++.+.+..  ++...+.+.+.|++.||++++++++.++..++   .
T Consensus       186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~  265 (490)
T 1fec_A          186 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTR  265 (490)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEE
Confidence            345669999999999999999999   999999999877533  56677788888888999999999999887531   1


Q ss_pred             ---------------------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHH
Q psy5231          86 ---------------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLAL  134 (148)
Q Consensus        86 ---------------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~  134 (148)
                                                 + .  .+++++ +|+|.||++     ++|+.|+|||+|||++.+  +.+..|.
T Consensus       266 ~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~-----~~t~~~~IyA~GD~~~~~--~l~~~A~  338 (490)
T 1fec_A          266 HVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAY-----SKTNVDNIYAIGDVTDRV--MLTPVAI  338 (490)
T ss_dssp             EEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTT-----CBCSSTTEEECGGGGCSC--CCHHHHH
T ss_pred             EEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCC-----CccCCCCEEEEeccCCCc--cCHHHHH
Confidence                                       0 0  124455 488999998     999999999999999765  5789999


Q ss_pred             HHHHHHHHHHHh
Q psy5231         135 GSGCMAALDAQR  146 (148)
Q Consensus       135 ~~G~~aA~~i~~  146 (148)
                      .+|+.||.+|..
T Consensus       339 ~~g~~aa~~i~g  350 (490)
T 1fec_A          339 NEGAAFVDTVFA  350 (490)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcC
Confidence            999999999863

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.4e-19  Score=144.51  Aligned_cols=125  Identities=14%  Similarity=0.167  Sum_probs=102.0

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--------   83 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--------   83 (148)
                      .+++++|||||.+|+|+|..|+++|.+||++++.+++..  ++...+.+.+.|++.||++++++++.++..+        
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v  263 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKI  263 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEE
Confidence            345569999999999999999999999999999877532  5677778888888899999999988887642        


Q ss_pred             ----C-e------------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231          84 ----N-T------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS  136 (148)
Q Consensus        84 ----~-~------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~  136 (148)
                          + .                  + .  .+++++ +|+|.||++     ++|+.|+|||+|||++.+  ..+..|..+
T Consensus       264 ~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~-----~~t~~~~IyA~GD~~~~~--~~~~~A~~~  336 (479)
T 2hqm_A          264 HMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEY-----QNTNVPNIYSLGDVVGKV--ELTPVAIAA  336 (479)
T ss_dssp             EETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTT-----CBCSSTTEEECGGGTTSS--CCHHHHHHH
T ss_pred             EECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCC-----CccCCCCEEEEEecCCCc--ccHHHHHHH
Confidence                1 1                  1 0  124444 378999998     999999999999998766  578899999


Q ss_pred             HHHHHHHHH
Q psy5231         137 GCMAALDAQ  145 (148)
Q Consensus       137 G~~aA~~i~  145 (148)
                      |+.||.+|.
T Consensus       337 g~~aa~~i~  345 (479)
T 2hqm_A          337 GRKLSNRLF  345 (479)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999986

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.82  E-value=2e-19  Score=143.25  Aligned_cols=127  Identities=17%  Similarity=0.185  Sum_probs=102.6

Q ss_pred             cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C----
Q psy5231          13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N----   84 (148)
Q Consensus        13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~----   84 (148)
                      +.+++++|||||.+|+|+|..|+++|.+||++++.+++..  ++...+.+.+.|++.||++++++.+.++..+  +    
T Consensus       185 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  264 (478)
T 3dk9_A          185 ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVS  264 (478)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEE
T ss_pred             hcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEE
Confidence            3456669999999999999999999999999999877532  5677778888888899999999888776521  1    


Q ss_pred             -------------e-------------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccch
Q psy5231          85 -------------T-------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFID  128 (148)
Q Consensus        85 -------------~-------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~  128 (148)
                                   .                   + .  .+++++ +|+|.+|++     ++|+.|+|||+|||++.+  .
T Consensus       265 v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~t~~~~IyA~GD~~~~~--~  337 (478)
T 3dk9_A          265 MVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEF-----QNTNVKGIYAVGDVCGKA--L  337 (478)
T ss_dssp             EEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTT-----CBCSSTTEEECGGGGCSS--C
T ss_pred             EEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCC-----cccCCCCEEEEEecCCCC--c
Confidence                         1                   0 0  124444 488999998     999999999999999766  5


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q psy5231         129 KQLLALGSGCMAALDAQR  146 (148)
Q Consensus       129 ~~~~A~~~G~~aA~~i~~  146 (148)
                      .+..|..+|+.||.+|..
T Consensus       338 ~~~~A~~~g~~aa~~i~~  355 (478)
T 3dk9_A          338 LTPVAIAAGRKLAHRLFE  355 (478)
T ss_dssp             CHHHHHHHHHHHHHHHHS
T ss_pred             cHhHHHHHHHHHHHHHcC
Confidence            788999999999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.82  E-value=1.8e-19  Score=143.14  Aligned_cols=125  Identities=18%  Similarity=0.216  Sum_probs=102.9

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------   85 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------   85 (148)
                      .+++++|||||.+|+|+|..|++.|.+||++++.+.+. .++...+.+.+.|++.||++++++++.++..++.       
T Consensus       175 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~  254 (467)
T 1zk7_A          175 IPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT  254 (467)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTSCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCCCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC
Confidence            34556999999999999999999999999999987754 3567777888888889999999999988864321       


Q ss_pred             ----------e-----e---------cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHH
Q psy5231          86 ----------V-----T---------GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMA  140 (148)
Q Consensus        86 ----------~-----~---------~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~a  140 (148)
                                +     .         .+++++ +|+|.+|+.     ++|+.|+||++|||+..+  ..+..|..+|+.|
T Consensus       255 ~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-----~~t~~~~iya~GD~~~~~--~~~~~A~~~g~~a  327 (467)
T 1zk7_A          255 HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQG-----MRTSNPNIYAAGDCTDQP--QFVYVAAAAGTRA  327 (467)
T ss_dssp             TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTT-----CBCSSTTEEECSTTBSSC--CCHHHHHHHHHHH
T ss_pred             CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCC-----cccCCCCEEEEeccCCCc--ccHHHHHHHHHHH
Confidence                      0     0         124445 478999998     999999999999999876  5788999999999


Q ss_pred             HHHHH
Q psy5231         141 ALDAQ  145 (148)
Q Consensus       141 A~~i~  145 (148)
                      |.+|.
T Consensus       328 a~~i~  332 (467)
T 1zk7_A          328 AINMT  332 (467)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            99985

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.82  E-value=2.2e-19  Score=143.26  Aligned_cols=126  Identities=16%  Similarity=0.150  Sum_probs=100.9

Q ss_pred             cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C-----
Q psy5231          13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N-----   84 (148)
Q Consensus        13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~-----   84 (148)
                      ..+++++|||||.+|+|+|..|+++|.+||++++...++. ++++.+.+.+.|++.||++++++.+.++..+  +     
T Consensus       185 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~  264 (483)
T 3dgh_A          185 REPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVK  264 (483)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEE
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEE
Confidence            3455669999999999999999999999999998643433 5677788888888899999999988887631  1     


Q ss_pred             ----------e------------------e--e-cceeecCCeEEecCCCCcccccCCCCCeEEecccCc-cccchhHHH
Q psy5231          85 ----------T------------------V--T-GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTR-LYFIDKQLL  132 (148)
Q Consensus        85 ----------~------------------~--~-~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~~~~~~~~~  132 (148)
                                .                  +  . .++++++|+|.+|++     ++|+.|+|||+|||+. .+  ..+..
T Consensus       265 ~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~vd~~-----~~t~~~~IyA~GD~~~~~~--~~~~~  337 (483)
T 3dgh_A          265 YKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQ-----EATNVANIYAVGDIIYGKP--ELTPV  337 (483)
T ss_dssp             EEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCCCTT-----CBCSSTTEEECSTTBTTSC--CCHHH
T ss_pred             EecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEEEECcC-----CccCCCCEEEEEcccCCCC--ccHHH
Confidence                      0                  0  0 124444588999998     9999999999999984 44  57889


Q ss_pred             HHHHHHHHHHHHH
Q psy5231         133 ALGSGCMAALDAQ  145 (148)
Q Consensus       133 A~~~G~~aA~~i~  145 (148)
                      |..+|+.||.+|.
T Consensus       338 A~~~g~~aa~~i~  350 (483)
T 3dgh_A          338 AVLAGRLLARRLY  350 (483)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999999986

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.82  E-value=9.5e-20  Score=139.78  Aligned_cols=131  Identities=21%  Similarity=0.243  Sum_probs=104.1

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC-----
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN-----   83 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~-----   83 (148)
                      +.++++    +|||+|++|+|+|..|++.+.+|+++++.+.+...+...+.+.+.+++.||++++++.+.++..+     
T Consensus       161 ~~~~~v----vVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~  236 (360)
T 3ab1_A          161 FKGKRV----VIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIEESNGVLT  236 (360)
T ss_dssp             GTTCEE----EEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEE
T ss_pred             cCCCcE----EEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceE
Confidence            456666    99999999999999999999999999998877665666667777677889999999888777532     


Q ss_pred             --------C--e------------------ee--cceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc-chhHHH
Q psy5231          84 --------N--T------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF-IDKQLL  132 (148)
Q Consensus        84 --------~--~------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~-~~~~~~  132 (148)
                              +  .                  +.  .++.++.|++.+|+.     ++|+.|+||++|||+..++ .+.+..
T Consensus       237 ~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~-----~~t~~~~vya~GD~~~~~~~~~~~~~  311 (360)
T 3ab1_A          237 RVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSH-----MKTSVDGLYAAGDIAYYPGKLKIIQT  311 (360)
T ss_dssp             EEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTT-----SBCSSTTEEECSTTEECTTCCCSHHH
T ss_pred             EEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCC-----CcCCCCCEEEecCccCCCCccceeeh
Confidence                    1  1                  00  123344688999998     9999999999999986421 357889


Q ss_pred             HHHHHHHHHHHHHhhC
Q psy5231         133 ALGSGCMAALDAQRYL  148 (148)
Q Consensus       133 A~~~G~~aA~~i~~~l  148 (148)
                      |..+|..||.+|.++|
T Consensus       312 A~~~g~~aa~~i~~~l  327 (360)
T 3ab1_A          312 GLSEATMAVRHSLSYI  327 (360)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhc
Confidence            9999999999998764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.82  E-value=1.9e-19  Score=143.02  Aligned_cols=126  Identities=17%  Similarity=0.105  Sum_probs=102.4

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHH-hcCCcEEEcCceEEEEecCC------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKV-NEGKIDIKLKHIVHKIIGNN------   84 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l-~~~~v~i~~~~~v~~i~~~~------   84 (148)
                      .+++++|||||.+|+|+|..|++.|.+||++++.+.+..  +++..+.+.+.| ++.||++++++++.++..++      
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~  252 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLE  252 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEE
Confidence            345569999999999999999999999999999877643  566777888888 88999999999888775321      


Q ss_pred             --------e------------------e--e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCc-cccchhHHH
Q psy5231          85 --------T------------------V--T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTR-LYFIDKQLL  132 (148)
Q Consensus        85 --------~------------------~--~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~~~~~~~~~  132 (148)
                              .                  +  .  .+++++ +|+|.||++     ++|+.|+|||+|||++ .+  +....
T Consensus       253 ~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-----~~t~~~~IyA~GD~~~~~~--~~~~~  325 (468)
T 2qae_A          253 VEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDH-----FETSIPDVYAIGDVVDKGP--MLAHK  325 (468)
T ss_dssp             EECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTT-----SBCSSTTEEECGGGBSSSC--SCHHH
T ss_pred             EEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCC-----cccCCCCEEEeeccCCCCC--ccHhH
Confidence                    1                  0  0  124445 388999998     9999999999999998 55  57889


Q ss_pred             HHHHHHHHHHHHHh
Q psy5231         133 ALGSGCMAALDAQR  146 (148)
Q Consensus       133 A~~~G~~aA~~i~~  146 (148)
                      |..+|+.||.+|..
T Consensus       326 A~~~g~~aa~~i~~  339 (468)
T 2qae_A          326 AEDEGVACAEILAG  339 (468)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999999863

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.82  E-value=1.7e-19  Score=144.54  Aligned_cols=125  Identities=15%  Similarity=0.142  Sum_probs=103.4

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--e-----
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--T-----   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--~-----   85 (148)
                      +++++|||||.+|+|+|..|+++|.+||++++.+.+.  .++...+.+.+.|++.||++++++.|.++..++  .     
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~  261 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMT  261 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEET
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEC
Confidence            4555999999999999999999999999999987764  356777788888888999999999999887543  1     


Q ss_pred             ---------------------e--ec--ceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231          86 ---------------------V--TG--QLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM  139 (148)
Q Consensus        86 ---------------------~--~~--~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~  139 (148)
                                           +  ..  ++++++ |+|.||++     ++|+.|+|||+|||++.+  .....|..+|+.
T Consensus       262 ~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~-----~~t~~~~IyA~GD~~~~~--~l~~~A~~~g~~  334 (499)
T 1xdi_A          262 DGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRV-----SRTLATGIYAAGDCTGLL--PLASVAAMQGRI  334 (499)
T ss_dssp             TSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSS-----SBCSSTTEEECSGGGTSC--SCHHHHHHHHHH
T ss_pred             CCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCC-----cccCCCCEEEEeccCCCc--ccHHHHHHHHHH
Confidence                                 1  01  344554 88999998     999999999999999876  578899999999


Q ss_pred             HHHHHHh
Q psy5231         140 AALDAQR  146 (148)
Q Consensus       140 aA~~i~~  146 (148)
                      ||.+|..
T Consensus       335 aa~~i~g  341 (499)
T 1xdi_A          335 AMYHALG  341 (499)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhcC
Confidence            9999863

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.82  E-value=1.2e-19  Score=145.10  Aligned_cols=126  Identities=20%  Similarity=0.192  Sum_probs=103.1

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--------   83 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--------   83 (148)
                      .+++++|||||.+|+|+|..|+++|.+||++++.+.+..  ++...+.+.+.|++.||++++++++.++..+        
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~  276 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTF  276 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEE
Confidence            345559999999999999999999999999999877643  5677788888888899999999888877532        


Q ss_pred             -----C--e-------------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHH
Q psy5231          84 -----N--T-------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLA  133 (148)
Q Consensus        84 -----~--~-------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A  133 (148)
                           +  .                   + .  .+++++ +|+|.+|+.     ++|+.|+|||+|||++.+  +....|
T Consensus       277 ~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~t~~~~IyA~GD~~~~~--~~~~~A  349 (491)
T 3urh_A          277 EPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRH-----FQTSIAGVYAIGDVVRGP--MLAHKA  349 (491)
T ss_dssp             EETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTT-----CBCSSTTEEECGGGSSSC--CCHHHH
T ss_pred             EecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCC-----CCCCCCCEEEEEecCCCc--cchhHH
Confidence                 1  1                   0 0  134455 488999998     999999999999999776  688999


Q ss_pred             HHHHHHHHHHHHh
Q psy5231         134 LGSGCMAALDAQR  146 (148)
Q Consensus       134 ~~~G~~aA~~i~~  146 (148)
                      ..+|+.||.+|..
T Consensus       350 ~~~g~~aa~~i~g  362 (491)
T 3urh_A          350 EDEGVAVAEIIAG  362 (491)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999999863

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.81  E-value=2.6e-19  Score=140.30  Aligned_cols=126  Identities=20%  Similarity=0.218  Sum_probs=100.6

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEecC----
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN----   83 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~----   83 (148)
                      ++++    +|||||.+|+|+|..|+++|.+||++++.+.+.   .++.+.+.+.+.|++.||++++++.+.++..+    
T Consensus       145 ~~~v----vViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~v~~  220 (408)
T 2gqw_A          145 QSRL----LIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLL  220 (408)
T ss_dssp             TCEE----EEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEETTEEEE
T ss_pred             CCeE----EEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEECCEEEE
Confidence            5555    999999999999999999999999999987763   24667777888888899999999999887621    


Q ss_pred             --Ce------------------e--ecceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc--------chhHHHH
Q psy5231          84 --NT------------------V--TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDKQLLA  133 (148)
Q Consensus        84 --~~------------------~--~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~~~~A  133 (148)
                        +.                  +  ..++++++| |.||++     ++|+.|+|||+|||+..+.        +.++..|
T Consensus       221 ~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~g-i~Vd~~-----~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A  294 (408)
T 2gqw_A          221 DDGTRIAADMVVVGIGVLANDALARAAGLACDDG-IFVDAY-----GRTTCPDVYALGDVTRQRNPLSGRFERIETWSNA  294 (408)
T ss_dssp             TTSCEEECSEEEECSCEEECCHHHHHHTCCBSSS-EECCTT-----CBCSSTTEEECGGGEEEEETTTTEEECCCCHHHH
T ss_pred             CCCCEEEcCEEEECcCCCccHHHHHhCCCCCCCC-EEECCC-----CccCCCCEEEEEEEEEecCccCCceeeccHHHHH
Confidence              10                  0  013444545 999998     9999999999999987641        1257899


Q ss_pred             HHHHHHHHHHHHh
Q psy5231         134 LGSGCMAALDAQR  146 (148)
Q Consensus       134 ~~~G~~aA~~i~~  146 (148)
                      ..+|+.||.+|..
T Consensus       295 ~~~g~~aa~~i~g  307 (408)
T 2gqw_A          295 QNQGIAVARHLVD  307 (408)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999864

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.81  E-value=3.2e-19  Score=143.08  Aligned_cols=126  Identities=18%  Similarity=0.253  Sum_probs=100.7

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N------   84 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~------   84 (148)
                      +++++|||||.+|+|+|..|+++|.+||++++.+.+..  +++..+.+.+.|++.||++++++++.++..+  +      
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~  255 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHL  255 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEE
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEE
Confidence            45569999999999999999999999999999877643  5677788888888999999999999888643  1      


Q ss_pred             ------e-----------------e-e--cceeecCCeEEecCCCCcccccCCCCCeEEecccCcc--------------
Q psy5231          85 ------T-----------------V-T--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRL--------------  124 (148)
Q Consensus        85 ------~-----------------~-~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~--------------  124 (148)
                            .                 + .  .++++++|+|.||++     ++|+.|+|||+|||+..              
T Consensus       256 ~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~-----~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~  330 (500)
T 1onf_A          256 SDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDEN-----QRTSVNNIYAVGDCCMVKKSKEIEDLNLLKL  330 (500)
T ss_dssp             TTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTT-----CBCSSSSEEECSTTEEEC-------------
T ss_pred             CCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCC-----cccCCCCEEEEeccccccccccccccccccc
Confidence                  1                 0 0  012333477999998     99999999999999820              


Q ss_pred             ------------------ccchhHHHHHHHHHHHHHHHH
Q psy5231         125 ------------------YFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus       125 ------------------~~~~~~~~A~~~G~~aA~~i~  145 (148)
                                        ..+..+..|..+|+.||.+|.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  369 (500)
T 1onf_A          331 YNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLF  369 (500)
T ss_dssp             -----------------CBCCCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCcccchhHHHHHHHHHHHHHh
Confidence                              113578899999999999986

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.81  E-value=2e-19  Score=143.06  Aligned_cols=125  Identities=19%  Similarity=0.200  Sum_probs=101.1

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEec---------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIG---------   82 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~---------   82 (148)
                      .+++++|||||.+|+|+|..|+++|.+||++++.+.+..  ++++.+.+.+.|++.||++++++++.++..         
T Consensus       168 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~  247 (464)
T 2eq6_A          168 LPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRL  247 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEE
Confidence            345569999999999999999999999999999876532  566777788888889999999988877642         


Q ss_pred             --C--C---e-----------------e--e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHH
Q psy5231          83 --N--N---T-----------------V--T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLA  133 (148)
Q Consensus        83 --~--~---~-----------------~--~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A  133 (148)
                        +  +   .                 +  .  .++.++ +|+|.+|++     ++|+.|+|||+|||++.+  .....|
T Consensus       248 ~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~t~~~~Iya~GD~~~~~--~l~~~A  320 (464)
T 2eq6_A          248 EPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNAR-----METSVPGVYAIGDAARPP--LLAHKA  320 (464)
T ss_dssp             EETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTT-----CBCSSTTEEECGGGTCSS--CCHHHH
T ss_pred             eecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCC-----cccCCCCEEEEeccCCCc--ccHHHH
Confidence              1  1   1                 0  0  123444 478999998     999999999999999876  578899


Q ss_pred             HHHHHHHHHHHH
Q psy5231         134 LGSGCMAALDAQ  145 (148)
Q Consensus       134 ~~~G~~aA~~i~  145 (148)
                      ..+|+.||.+|.
T Consensus       321 ~~~g~~aa~~i~  332 (464)
T 2eq6_A          321 MREGLIAAENAA  332 (464)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999999986

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.81  E-value=3.4e-19  Score=142.42  Aligned_cols=127  Identities=16%  Similarity=0.121  Sum_probs=100.8

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N------   84 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~------   84 (148)
                      .+++++|||||.+|+|+|..|+++|.+||++++...++. ++++.+.+.+.|++.||++++++.+.++...  +      
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~  263 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTW  263 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEE
Confidence            345569999999999999999999999999998754433 5777888888888999999999888777431  1      


Q ss_pred             ------e--------------------e----ecceeec--CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHH
Q psy5231          85 ------T--------------------V----TGQLEMN--DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLL  132 (148)
Q Consensus        85 ------~--------------------~----~~~~~~~--~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~  132 (148)
                            .                    +    ..++.++  .|+|.+|++     ++|+.|+|||+|||+... +..+..
T Consensus       264 ~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~-----~~t~~~~IyA~GD~~~~~-~~~~~~  337 (488)
T 3dgz_A          264 EDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ-----EATSVPHIYAIGDVAEGR-PELTPT  337 (488)
T ss_dssp             EETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTT-----SBCSSTTEEECGGGBTTC-CCCHHH
T ss_pred             EeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCC-----CccCCCCEEEeEEecCCC-CcchhH
Confidence                  0                    0    0134555  488999988     999999999999997432 257889


Q ss_pred             HHHHHHHHHHHHHh
Q psy5231         133 ALGSGCMAALDAQR  146 (148)
Q Consensus       133 A~~~G~~aA~~i~~  146 (148)
                      |..+|+.||.+|..
T Consensus       338 A~~~g~~aa~~i~g  351 (488)
T 3dgz_A          338 AIKAGKLLAQRLFG  351 (488)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999999863

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.81  E-value=4.7e-19  Score=137.56  Aligned_cols=125  Identities=13%  Similarity=0.119  Sum_probs=99.7

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--   85 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--   85 (148)
                      ++++    +|||+|.+|+|+|..|++.|.+|+++++.+.+..   ++...+.+.+.|++.|+++++++++.++..++.  
T Consensus       145 ~~~v----~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~  220 (384)
T 2v3a_A          145 KRRV----LLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGL  220 (384)
T ss_dssp             CCEE----EEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEE
T ss_pred             CCeE----EEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEE
Confidence            5555    9999999999999999999999999999877543   456777888888889999999999988864310  


Q ss_pred             --------------------------e--ecceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc--chhHHHHHH
Q psy5231          86 --------------------------V--TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--IDKQLLALG  135 (148)
Q Consensus        86 --------------------------~--~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--~~~~~~A~~  135 (148)
                                                +  ..++++++| |.+|++     ++|+.|+|||+|||+..++  +..+..|..
T Consensus       221 ~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~-----~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~  294 (384)
T 2v3a_A          221 EAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRS-----LRTSHANIYALGDCAEVDGLNLLYVMPLMA  294 (384)
T ss_dssp             EEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTT-----CBCSSTTEEECGGGEEETTBCCCSHHHHHH
T ss_pred             EEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCC-----CCCCCCCEEEeeeeeeECCCCcchHHHHHH
Confidence                                      0  013444556 999999     9999999999999985321  235777899


Q ss_pred             HHHHHHHHHH
Q psy5231         136 SGCMAALDAQ  145 (148)
Q Consensus       136 ~G~~aA~~i~  145 (148)
                      +|+.||.+|.
T Consensus       295 ~g~~~a~~i~  304 (384)
T 2v3a_A          295 CARALAQTLA  304 (384)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999985

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.81  E-value=2.4e-19  Score=141.99  Aligned_cols=125  Identities=21%  Similarity=0.258  Sum_probs=100.6

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEec-CCe------
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIG-NNT------   85 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~-~~~------   85 (148)
                      ++++|||||.+|+|+|..|+++|.+||++++.+.+..   ++.+.+.+.+.|++.||++++++++.++.. ++.      
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~  229 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL  229 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe
Confidence            3449999999999999999999999999999877533   567777888888889999999999988865 221      


Q ss_pred             ---------------------e-ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc--------chhHHHHH
Q psy5231          86 ---------------------V-TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDKQLLAL  134 (148)
Q Consensus        86 ---------------------~-~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~~~~A~  134 (148)
                                           + ...++++ +|+|.||++     ++|+.|+|||+|||+..+.        .+.+..|.
T Consensus       230 ~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~-----~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~  304 (452)
T 2cdu_A          230 DGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEY-----MHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAV  304 (452)
T ss_dssp             TSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTT-----SBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHH
T ss_pred             CCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCC-----cCcCCCCEEEcceEEEeccccCCCeeecchHHHHH
Confidence                                 0 1113444 488999998     9999999999999987420        14688999


Q ss_pred             HHHHHHHHHHH
Q psy5231         135 GSGCMAALDAQ  145 (148)
Q Consensus       135 ~~G~~aA~~i~  145 (148)
                      .+|+.||.+|.
T Consensus       305 ~~g~~aa~~i~  315 (452)
T 2cdu_A          305 RQGRLVGLNLT  315 (452)
T ss_dssp             HHHHHHHHTSS
T ss_pred             HHHHHHHHHhC
Confidence            99999999875

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.81  E-value=3e-19  Score=138.29  Aligned_cols=127  Identities=18%  Similarity=0.161  Sum_probs=100.1

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe---
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT---   85 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~---   85 (148)
                      .++++    +|||||++|+|+|..|+++|.+||++++.+.+. .+++..+.+.+.|++.||++++++++.++..+..   
T Consensus       142 ~~~~v----vViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~v~~~  217 (367)
T 1xhc_A          142 NSGEA----IIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEGVLTN  217 (367)
T ss_dssp             HHSEE----EEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSSEEEET
T ss_pred             cCCcE----EEECCCHHHHHHHHHHHhCCCEEEEEeCCCeeccCCHHHHHHHHHHHHHCCCEEEcCCEEEEEEeeEEEEC
Confidence            34666    999999999999999999999999999987654 3566777788888889999999999988753211   


Q ss_pred             --------------------ee--cceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc--chhHHHHHHHHHHHH
Q psy5231          86 --------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--IDKQLLALGSGCMAA  141 (148)
Q Consensus        86 --------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--~~~~~~A~~~G~~aA  141 (148)
                                          +.  .+++.++| |.+|+.     ++|+.|+|||+|||+..++  ++.+..|..+|+.||
T Consensus       218 ~g~i~~D~vi~a~G~~p~~~ll~~~gl~~~~g-i~Vd~~-----~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa  291 (367)
T 1xhc_A          218 SGFIEGKVKICAIGIVPNVDLARRSGIHTGRG-ILIDDN-----FRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLA  291 (367)
T ss_dssp             TEEEECSCEEEECCEEECCHHHHHTTCCBSSS-EECCTT-----SBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHH
T ss_pred             CCEEEcCEEEECcCCCcCHHHHHhCCCCCCCC-EEECCC-----cccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHH
Confidence                                00  13344444 889998     9999999999999975321  247889999999999


Q ss_pred             HHHHh
Q psy5231         142 LDAQR  146 (148)
Q Consensus       142 ~~i~~  146 (148)
                      .+|..
T Consensus       292 ~~i~g  296 (367)
T 1xhc_A          292 DILKG  296 (367)
T ss_dssp             HHHTT
T ss_pred             HHhcC
Confidence            99863

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.81  E-value=2e-19  Score=142.47  Aligned_cols=125  Identities=18%  Similarity=0.239  Sum_probs=101.2

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-e------
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-T------   85 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-~------   85 (148)
                      ++++|||+|.+|+|+|..|++.|.+||++++.+.+..   ++...+.+.+.|++.||++++++.+.++..++ .      
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~  227 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETS  227 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEEC
Confidence            3449999999999999999999999999999887642   57778888888889999999999999887321 1      


Q ss_pred             ---------------------eecceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc--------chhHHHHHH
Q psy5231          86 ---------------------VTGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDKQLLALG  135 (148)
Q Consensus        86 ---------------------~~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~~~~A~~  135 (148)
                                           +...+.++ +|+|.+|++     ++|+.|+|||+|||+..+.        .+.+..|..
T Consensus       228 ~g~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~-----~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~  302 (452)
T 3oc4_A          228 EQEISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAY-----LQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVR  302 (452)
T ss_dssp             SCEEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTT-----CBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHH
T ss_pred             CCEEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcC-----ccCCCCCEEEEEeeEEeccccCCceeecchHHHHHH
Confidence                                 11124454 488999998     9999999999999987531        137889999


Q ss_pred             HHHHHHHHHH
Q psy5231         136 SGCMAALDAQ  145 (148)
Q Consensus       136 ~G~~aA~~i~  145 (148)
                      +|+.||.+|.
T Consensus       303 ~g~~aa~~i~  312 (452)
T 3oc4_A          303 TGLVVANNLE  312 (452)
T ss_dssp             HHHHHTTSSS
T ss_pred             HHHHHHHHhc
Confidence            9999998874

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.80  E-value=3.9e-19  Score=141.39  Aligned_cols=125  Identities=20%  Similarity=0.264  Sum_probs=101.3

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--------   83 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--------   83 (148)
                      .+++++|||||.+|+|+|..|+++|.+||++++.+.+..  ++...+.+.+.|++.||++++++++.++..+        
T Consensus       165 ~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~  244 (463)
T 2r9z_A          165 QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVA  244 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEE
Confidence            345669999999999999999999999999999876532  5667777888888899999999988877532        


Q ss_pred             ---C-e------------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231          84 ---N-T------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG  137 (148)
Q Consensus        84 ---~-~------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G  137 (148)
                         . .                  + .  .+++++ +|+|.||++     ++|+.|+|||+|||++.+  .....|..+|
T Consensus       245 ~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-----~~t~~~~Iya~GD~~~~~--~~~~~A~~~g  317 (463)
T 2r9z_A          245 QDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAY-----QNTNVPGVYALGDITGRD--QLTPVAIAAG  317 (463)
T ss_dssp             TTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTT-----SBCSSTTEEECGGGGTSC--CCHHHHHHHH
T ss_pred             eCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCC-----CccCCCCEEEEeecCCCc--ccHHHHHHHH
Confidence               1 1                  0 0  023444 478999998     999999999999998765  5788999999


Q ss_pred             HHHHHHHH
Q psy5231         138 CMAALDAQ  145 (148)
Q Consensus       138 ~~aA~~i~  145 (148)
                      +.||.+|.
T Consensus       318 ~~aa~~i~  325 (463)
T 2r9z_A          318 RRLAERLF  325 (463)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99999986

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.80  E-value=4.7e-19  Score=140.38  Aligned_cols=125  Identities=14%  Similarity=0.107  Sum_probs=101.7

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------   85 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------   85 (148)
                      +++++|||||++|+|+|..|++.|.+|+++++.+.+.  .++.+.+.+.+.|++.||++++++++.++..++.       
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~  246 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELE  246 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEET
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEEC
Confidence            4556999999999999999999999999999987753  2566777788888889999999999988864320       


Q ss_pred             ---------------------e--e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231          86 ---------------------V--T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM  139 (148)
Q Consensus        86 ---------------------~--~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~  139 (148)
                                           +  .  .++.++ +|++.+|+.     ++|+.|+||++|||+..+  .....|..+|+.
T Consensus       247 ~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~-----~~t~~~~iya~GD~~~~~--~~~~~A~~~g~~  319 (455)
T 2yqu_A          247 GGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEH-----LRTRVPHIYAIGDVVRGP--MLAHKASEEGIA  319 (455)
T ss_dssp             TSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTT-----SBCSSTTEEECGGGSSSC--CCHHHHHHHHHH
T ss_pred             CCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCC-----cccCCCCEEEEecCCCCc--cCHHHHHHhHHH
Confidence                                 0  0  123444 377899998     999999999999999876  578899999999


Q ss_pred             HHHHHHh
Q psy5231         140 AALDAQR  146 (148)
Q Consensus       140 aA~~i~~  146 (148)
                      ||.+|..
T Consensus       320 aa~~i~~  326 (455)
T 2yqu_A          320 AVEHMVR  326 (455)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9999863

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.80  E-value=3.3e-19  Score=132.60  Aligned_cols=128  Identities=20%  Similarity=0.213  Sum_probs=99.6

Q ss_pred             hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231           3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      |+....+.++++    +|||+|++|+|+|..|++.| +|+++++.+. ...+.+.+    .|++.||+++. +.+.++..
T Consensus       133 ~~~~~~~~~~~v----~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~-~~~~~~~~----~l~~~gv~i~~-~~v~~i~~  201 (297)
T 3fbs_A          133 YCHGYELDQGKI----GVIAASPMAIHHALMLPDWG-ETTFFTNGIV-EPDADQHA----LLAARGVRVET-TRIREIAG  201 (297)
T ss_dssp             HHHTGGGTTCEE----EEECCSTTHHHHHHHGGGTS-EEEEECTTTC-CCCHHHHH----HHHHTTCEEEC-SCEEEEET
T ss_pred             cCcchhhcCCEE----EEEecCccHHHHHHHhhhcC-cEEEEECCCC-CCCHHHHH----HHHHCCcEEEc-ceeeeeec
Confidence            445666777887    99999999999999999999 9999998754 22333433    34468999995 88888876


Q ss_pred             CC-e------------------------ee--cceeec---CC-eEEecCCCCcccccCCCCCeEEecccCccccchhHH
Q psy5231          83 NN-T------------------------VT--GQLEMN---DG-YIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQL  131 (148)
Q Consensus        83 ~~-~------------------------~~--~~~~~~---~g-~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~  131 (148)
                      ++ .                        +.  .+++++   .| ++.+|+.     ++|+.|+||++|||++.+  +++.
T Consensus       202 ~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~-----~~t~~~~vya~GD~~~~~--~~~~  274 (297)
T 3fbs_A          202 HADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPM-----KQTTARGIFACGDVARPA--GSVA  274 (297)
T ss_dssp             TEEEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTT-----CBCSSTTEEECSGGGCTT--CCHH
T ss_pred             CCeEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCC-----CccCCCCEEEEeecCCch--HHHH
Confidence            41 1                        00  123333   25 8999998     999999999999999866  6899


Q ss_pred             HHHHHHHHHHHHHHhhC
Q psy5231         132 LALGSGCMAALDAQRYL  148 (148)
Q Consensus       132 ~A~~~G~~aA~~i~~~l  148 (148)
                      .|+.+|+.||.+|.++|
T Consensus       275 ~A~~~g~~aa~~i~~~l  291 (297)
T 3fbs_A          275 LAVGDGAMAGAAAHRSI  291 (297)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHH
Confidence            99999999999998875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.80  E-value=5.2e-19  Score=141.21  Aligned_cols=126  Identities=19%  Similarity=0.214  Sum_probs=103.4

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe------
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------   85 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------   85 (148)
                      .+++++|||+|.+|+|+|..|++.|.+|+++++.+.+..  ++.+.+.+.+.|++.||++++++.|.++..++.      
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~  269 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVL  269 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEE
Confidence            345669999999999999999999999999999876532  566777788888889999999999998875421      


Q ss_pred             -----------------------e-e--cceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHH
Q psy5231          86 -----------------------V-T--GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGC  138 (148)
Q Consensus        86 -----------------------~-~--~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~  138 (148)
                                             + .  .+++++. |+|.+|+.     ++|+.|+|||+|||++.+  +....|..+|+
T Consensus       270 ~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~t~~~~Iya~GD~~~~~--~~~~~A~~~g~  342 (484)
T 3o0h_A          270 TNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEK-----MTTNVSHIWAVGDVTGHI--QLTPVAIHDAM  342 (484)
T ss_dssp             TTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTT-----SBCSSTTEEECGGGGTSC--CCHHHHHHHHH
T ss_pred             CCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCC-----CCCCCCCEEEEEecCCCC--cCHHHHHHHHH
Confidence                                   0 0  1344553 88999998     999999999999999866  67889999999


Q ss_pred             HHHHHHHh
Q psy5231         139 MAALDAQR  146 (148)
Q Consensus       139 ~aA~~i~~  146 (148)
                      .||.+|..
T Consensus       343 ~aa~~i~~  350 (484)
T 3o0h_A          343 CFVKNAFE  350 (484)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHcC
Confidence            99999863

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.80  E-value=9.2e-19  Score=139.01  Aligned_cols=124  Identities=18%  Similarity=0.176  Sum_probs=100.1

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEec--------CC
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIG--------NN   84 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~--------~~   84 (148)
                      +++++|||||++|+|+|..|++.|.+||++++.+.+..  +++..+.+.+.|++.||++++++++.++..        ++
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G  250 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKG  250 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCC
Confidence            45569999999999999999999999999999877643  566777788888889999999999888752        11


Q ss_pred             ---e-----------------e--ec--ceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHH
Q psy5231          85 ---T-----------------V--TG--QLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMA  140 (148)
Q Consensus        85 ---~-----------------~--~~--~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~a  140 (148)
                         .                 +  ..  ++.+++.+|.+|++     ++|+.|+|||+|||+..+  +....|..+|+.|
T Consensus       251 ~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~-----~~t~~~~Iya~GD~~~~~--~~~~~A~~~g~~a  323 (458)
T 1lvl_A          251 GQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDER-----CQTSMHNVWAIGDVAGEP--MLAHRAMAQGEMV  323 (458)
T ss_dssp             CCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTT-----CBCSSTTEEECGGGGCSS--CCHHHHHHHHHHH
T ss_pred             ceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCC-----CcCCCCCEEEeeccCCCc--ccHHHHHHHHHHH
Confidence               1                 0  01  23333227889998     999999999999999876  5788999999999


Q ss_pred             HHHHH
Q psy5231         141 ALDAQ  145 (148)
Q Consensus       141 A~~i~  145 (148)
                      |.+|.
T Consensus       324 a~~i~  328 (458)
T 1lvl_A          324 AEIIA  328 (458)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99986

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.80  E-value=6.2e-19  Score=140.73  Aligned_cols=125  Identities=24%  Similarity=0.369  Sum_probs=100.4

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--------
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--------   85 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--------   85 (148)
                      ++++|||||++|+|+|..|+++|.+|+++++.+.+..  ++.+.+.+.+.+++.||++++++.+.++..++.        
T Consensus       187 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~  266 (480)
T 3cgb_A          187 EDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDK  266 (480)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECC
Confidence            3349999999999999999999999999999876543  567777788888889999999999988865431        


Q ss_pred             -------------------ee--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc--------chhHHHHHH
Q psy5231          86 -------------------VT--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDKQLLALG  135 (148)
Q Consensus        86 -------------------~~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~~~~A~~  135 (148)
                                         +.  .+++++ +|+|.||++     ++|+.|+|||+|||+..+.        ...+..|..
T Consensus       267 ~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~-----~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~  341 (480)
T 3cgb_A          267 GTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAY-----MQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANK  341 (480)
T ss_dssp             EEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTT-----SBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHH
T ss_pred             CEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCC-----ccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHH
Confidence                               00  134455 378999998     9999999999999985431        135789999


Q ss_pred             HHHHHHHHHH
Q psy5231         136 SGCMAALDAQ  145 (148)
Q Consensus       136 ~G~~aA~~i~  145 (148)
                      +|+.||.+|.
T Consensus       342 qg~~aa~~i~  351 (480)
T 3cgb_A          342 QGRLAGLNML  351 (480)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999985

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.79  E-value=1.7e-19  Score=140.70  Aligned_cols=126  Identities=17%  Similarity=0.078  Sum_probs=99.6

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEe----cC
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKII----GN   83 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~----~~   83 (148)
                      ++++    +|||||.+|+|+|..|++.|.+||++++.+.+.   .++...+.+.+.+++.||++++++.+.++.    .+
T Consensus       146 ~~~v----vVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~ig~~~~~D  221 (385)
T 3klj_A          146 KGKA----FIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEMGDLIRSS  221 (385)
T ss_dssp             HSCE----EEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGCHHHHHHS
T ss_pred             CCeE----EEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEcCeEEecC
Confidence            6677    999999999999999999999999999988763   256777778888888999999988776541    11


Q ss_pred             Ce-----------ee--cceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc--chhHHHHHHHHHHHHHHHHh
Q psy5231          84 NT-----------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--IDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus        84 ~~-----------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--~~~~~~A~~~G~~aA~~i~~  146 (148)
                      -.           +.  .++..++| +.+|++     ++|+.|+|||+|||+..++  ++.+..|..+|+.||.+|..
T Consensus       222 ~vv~a~G~~p~~~~~~~~gl~~~~g-i~vd~~-----~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g  293 (385)
T 3klj_A          222 CVITAVGVKPNLDFIKDTEIASKRG-ILVNDH-----METSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACG  293 (385)
T ss_dssp             EEEECCCEEECCGGGTTSCCCBSSS-EEECTT-----CBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTT
T ss_pred             eEEECcCcccChhhhhhcCCCcCCC-EEECCC-----cccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence            11           11  14445555 899998     9999999999999987421  25788999999999999863

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.79  E-value=9.8e-19  Score=140.91  Aligned_cols=126  Identities=20%  Similarity=0.196  Sum_probs=98.6

Q ss_pred             cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-hHHHHHHHHhHHhcCCcEEEcCceEEEEec---------
Q psy5231          13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-EKILIDRLMQKVNEGKIDIKLKHIVHKIIG---------   82 (148)
Q Consensus        13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~---------   82 (148)
                      ..+++++|||||.+|+|+|..|+++|.+||++++..-++. ++++.+.+.+.|++.||++++++.+.++..         
T Consensus       208 ~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~  287 (519)
T 3qfa_A          208 YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRL  287 (519)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEE
T ss_pred             hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceE
Confidence            3345569999999999999999999999999998643333 567788888888899999999876555432         


Q ss_pred             -------CC---e-------------------e-e--cceeec--CCeEEecCCCCcccccCCCCCeEEecccC-ccccc
Q psy5231          83 -------NN---T-------------------V-T--GQLEMN--DGYIKTKLNKKTGYTSTNISGVFCRWRCT-RLYFI  127 (148)
Q Consensus        83 -------~~---~-------------------~-~--~~~~~~--~g~i~vd~~~~~~~~~t~~~~vya~GD~~-~~~~~  127 (148)
                             ++   .                   + .  .+++++  .|+|.||++     ++|+.|+|||+|||+ +.+  
T Consensus       288 ~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~-----~~Ts~~~IyA~GD~~~g~~--  360 (519)
T 3qfa_A          288 RVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDE-----EQTNVPYIYAIGDILEDKV--  360 (519)
T ss_dssp             EEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTT-----SBCSSTTEEECGGGBSSSC--
T ss_pred             EEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCC-----CccCCCCEEEEEeccCCCC--
Confidence                   11   0                   0 0  134554  378999998     999999999999998 444  


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q psy5231         128 DKQLLALGSGCMAALDAQ  145 (148)
Q Consensus       128 ~~~~~A~~~G~~aA~~i~  145 (148)
                      ..+..|..+|+.||.+|.
T Consensus       361 ~~~~~A~~~g~~aa~~i~  378 (519)
T 3qfa_A          361 ELTPVAIQAGRLLAQRLY  378 (519)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHc
Confidence            578899999999999986

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.79  E-value=1.3e-18  Score=138.19  Aligned_cols=126  Identities=19%  Similarity=0.191  Sum_probs=102.8

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C-----
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N-----   84 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~-----   84 (148)
                      .+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.  .++...+.+.+.|++.||++++++.+.++..+  +     
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~  248 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVAT  248 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEE
Confidence            34556999999999999999999999999999987653  25677788888888999999999888877542  1     


Q ss_pred             ------e-----------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231          85 ------T-----------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG  137 (148)
Q Consensus        85 ------~-----------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G  137 (148)
                            .                 + .  .+++++ +|+|.+|++     ++|+.|+|||+|||++.+  +....|..+|
T Consensus       249 ~~~~g~i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~t~~~~iya~GD~~~~~--~~~~~A~~~g  321 (463)
T 4dna_A          249 TMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAF-----SRTSTPGIYALGDVTDRV--QLTPVAIHEA  321 (463)
T ss_dssp             ESSSCEEEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTT-----CBCSSTTEEECSGGGSSC--CCHHHHHHHH
T ss_pred             EcCCCeEEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcC-----CCCCCCCEEEEEecCCCC--CChHHHHHHH
Confidence                  0                 0 0  134455 388999998     999999999999999866  6788999999


Q ss_pred             HHHHHHHHh
Q psy5231         138 CMAALDAQR  146 (148)
Q Consensus       138 ~~aA~~i~~  146 (148)
                      +.||.+|..
T Consensus       322 ~~aa~~i~g  330 (463)
T 4dna_A          322 MCFIETEYK  330 (463)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHcC
Confidence            999999863

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.79  E-value=1.1e-18  Score=137.99  Aligned_cols=125  Identities=26%  Similarity=0.313  Sum_probs=99.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------   85 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------   85 (148)
                      ++++|||+|++|+|+|..|+++|.+|+++++.+.+..   ++++.+.+.+.+++.||++++++.+.++..++.       
T Consensus       150 ~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~~  229 (447)
T 1nhp_A          150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTD  229 (447)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEEC
Confidence            3449999999999999999999999999999876532   567777888888889999999999988865421       


Q ss_pred             ---------------------eecceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc--------chhHHHHHH
Q psy5231          86 ---------------------VTGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDKQLLALG  135 (148)
Q Consensus        86 ---------------------~~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~~~~A~~  135 (148)
                                           +...++++ +|+|.||++     ++|+.|+|||+|||+..+.        ...+..|..
T Consensus       230 ~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~-----~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~  304 (447)
T 1nhp_A          230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEY-----MRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK  304 (447)
T ss_dssp             SCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTT-----CBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHH
T ss_pred             CCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECcc-----ccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHH
Confidence                                 00113444 478999998     9999999999999986320        146889999


Q ss_pred             HHHHHHHHHH
Q psy5231         136 SGCMAALDAQ  145 (148)
Q Consensus       136 ~G~~aA~~i~  145 (148)
                      +|+.||.+|.
T Consensus       305 qg~~aa~~i~  314 (447)
T 1nhp_A          305 QGRFAVKNLE  314 (447)
T ss_dssp             HHHHHHHTSS
T ss_pred             HHHHHHHhhc
Confidence            9999999875

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.79  E-value=8.2e-19  Score=141.01  Aligned_cols=125  Identities=16%  Similarity=0.112  Sum_probs=100.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--------------CeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--------------KKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      +++|||||++|+|+|..|++++              .+|+|+++.+++..  ++.+.+.+.+.|++.||+++++++|.++
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v  298 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKV  298 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEE
Confidence            4599999999999999998653              68999999887643  5778888888898999999999999988


Q ss_pred             ecCCe---------------e-------ec---------------ceeec-CCeEEecCCCCcccccC-CCCCeEEeccc
Q psy5231          81 IGNNT---------------V-------TG---------------QLEMN-DGYIKTKLNKKTGYTST-NISGVFCRWRC  121 (148)
Q Consensus        81 ~~~~~---------------~-------~~---------------~~~~~-~g~i~vd~~~~~~~~~t-~~~~vya~GD~  121 (148)
                      ..+..               +       ..               +...+ .|+|.||++     ++| +.|+|||+|||
T Consensus       299 ~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~-----lq~~~~~~IfAiGD~  373 (502)
T 4g6h_A          299 EEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDF-----LQVKGSNNIFAIGDN  373 (502)
T ss_dssp             CSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTT-----SBBTTCSSEEECGGG
T ss_pred             eCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCc-----cccCCCCCEEEEEcc
Confidence            75432               0       00               11123 378999998     887 79999999999


Q ss_pred             CccccchhHHHHHHHHHHHHHHHHh
Q psy5231         122 TRLYFIDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus       122 ~~~~~~~~~~~A~~~G~~aA~~i~~  146 (148)
                      +..+.++....|..+|..+|.||.+
T Consensus       374 a~~~~p~~a~~A~qqg~~~A~ni~~  398 (502)
T 4g6h_A          374 AFAGLPPTAQVAHQEAEYLAKNFDK  398 (502)
T ss_dssp             EESSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCchHHHHHHHHHHHHHHHH
Confidence            8765346778899999999999965

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.79  E-value=9.6e-19  Score=137.08  Aligned_cols=127  Identities=16%  Similarity=0.146  Sum_probs=101.8

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-   85 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-   85 (148)
                      .++++    +|||+|.+|+|+|..|++.|.+||++++.+.+..   ++...+.+.+.+++.||++++++.+.++..++. 
T Consensus       142 ~~~~v----vViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~  217 (410)
T 3ef6_A          142 SATRL----LIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQL  217 (410)
T ss_dssp             TTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSC
T ss_pred             cCCeE----EEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcE
Confidence            35666    9999999999999999999999999999887643   456677777788889999999999999876421 


Q ss_pred             ---------------------------e--ecceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc-------chh
Q psy5231          86 ---------------------------V--TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF-------IDK  129 (148)
Q Consensus        86 ---------------------------~--~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~-------~~~  129 (148)
                                                 +  ..++..+ +.|.+|+.     ++|+.|+|||+|||+..+.       +.+
T Consensus       218 ~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~-----~~t~~~~IyA~GD~a~~~~~~g~~~~~~~  291 (410)
T 3ef6_A          218 EQVMASDGRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHC-----GATLAKGVFAVGDVASWPLRAGGRRSLET  291 (410)
T ss_dssp             CEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTT-----SBCSSTTEEECGGGEEEEBTTSSEECCCC
T ss_pred             EEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccC-----eeECCCCEEEEEcceeccCCCCCeeeech
Confidence                                       0  0134444 34899998     9999999999999987641       124


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy5231         130 QLLALGSGCMAALDAQR  146 (148)
Q Consensus       130 ~~~A~~~G~~aA~~i~~  146 (148)
                      +..|..+|+.||.+|..
T Consensus       292 ~~~A~~qg~~aa~~i~g  308 (410)
T 3ef6_A          292 YMNAQRQAAAVAAAILG  308 (410)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            78999999999999863

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.79  E-value=2e-18  Score=135.22  Aligned_cols=126  Identities=21%  Similarity=0.199  Sum_probs=100.9

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--   85 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--   85 (148)
                      ++++    +|||+|.+|+|+|..|++.|.+||++++.+.+..   ++...+.+.+.+++.||++++++.+.++..++.  
T Consensus       152 ~~~v----vViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v  227 (415)
T 3lxd_A          152 AKNA----VVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKV  227 (415)
T ss_dssp             CCEE----EEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBE
T ss_pred             CCeE----EEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcE
Confidence            6666    9999999999999999999999999999877632   466777777778889999999999998875421  


Q ss_pred             -----------------e------------ecceeecCCeEEecCCCCcccccCCCCCeEEecccCccccch--------
Q psy5231          86 -----------------V------------TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFID--------  128 (148)
Q Consensus        86 -----------------~------------~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~--------  128 (148)
                                       +            ..++..++| |.+|++     ++|+.|+|||+|||+..+...        
T Consensus       228 ~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~g-i~vd~~-----~~t~~~~iyA~GD~a~~~~~~~~g~~~~~  301 (415)
T 3lxd_A          228 TGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNG-VDVDEF-----CRTSLTDVYAIGDCAAHANDFADGAVIRL  301 (415)
T ss_dssp             EEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCCSSS-EECCTT-----CBCSSTTEEECGGGEEEECGGGTTCEECC
T ss_pred             EEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCcCCC-EEECCC-----CCcCCCCEEEEEeeeeecCcccCCcceee
Confidence                             0            012334444 899998     999999999999998765211        


Q ss_pred             -hHHHHHHHHHHHHHHHHh
Q psy5231         129 -KQLLALGSGCMAALDAQR  146 (148)
Q Consensus       129 -~~~~A~~~G~~aA~~i~~  146 (148)
                       .+..|..+|+.||.+|..
T Consensus       302 ~~~~~A~~qg~~aa~~i~g  320 (415)
T 3lxd_A          302 ESVQNANDMATAAAKDICG  320 (415)
T ss_dssp             CSHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHhcC
Confidence             368899999999999853

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.79  E-value=1.7e-18  Score=140.23  Aligned_cols=124  Identities=18%  Similarity=0.207  Sum_probs=99.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC-----------
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN-----------   83 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~-----------   83 (148)
                      +++|||||++|+|+|..|++.|.+||++++.+.+..  ++...+.+.+.|++.||++++++.+.++..+           
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~  232 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAG  232 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGT
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccc
Confidence            339999999999999999999999999999877643  4667777777788899999999999888751           


Q ss_pred             ---------Ce---------------------------e--ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCcc
Q psy5231          84 ---------NT---------------------------V--TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRL  124 (148)
Q Consensus        84 ---------~~---------------------------~--~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~  124 (148)
                               +.                           +  ..+++++. |+|.+|+.     ++|+.|+|||+|||+..
T Consensus       233 ~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~-----~~t~~~~IyA~GD~~~~  307 (565)
T 3ntd_A          233 EDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAM-----MQTSDPAIYAVGDAVEE  307 (565)
T ss_dssp             CCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTT-----CBCSSTTEEECGGGBCE
T ss_pred             cccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCC-----cccCCCCEEEeeeeEee
Confidence                     11                           0  01355553 88999998     99999999999999842


Q ss_pred             cc--------chhHHHHHHHHHHHHHHHH
Q psy5231         125 YF--------IDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus       125 ~~--------~~~~~~A~~~G~~aA~~i~  145 (148)
                      +.        .+.+..|..+|+.||.+|.
T Consensus       308 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  336 (565)
T 3ntd_A          308 QDFVTGQACLVPLAGPANRQGRMAADNMF  336 (565)
T ss_dssp             EBTTTCCEECCCCHHHHHHHHHHHHHHHT
T ss_pred             ccccCCceeecccHHHHHHHHHHHHHHhc
Confidence            10        1357889999999999986

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.78  E-value=1.9e-18  Score=139.28  Aligned_cols=124  Identities=20%  Similarity=0.274  Sum_probs=101.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEec--CC-------
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIG--NN-------   84 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~--~~-------   84 (148)
                      ++++|||||.+|+|+|..|++.|.+||++++.+.+..  ++...+.+.+.|++.||+++++++|.++..  ++       
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v  294 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVA  294 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEE
Confidence            4559999999999999999999999999999876643  567777888888889999999999988864  22       


Q ss_pred             -------e-------e-----e--c------ceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231          85 -------T-------V-----T--G------QLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS  136 (148)
Q Consensus        85 -------~-------~-----~--~------~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~  136 (148)
                             .       +     .  .      +++++ +|+|.||++     ++|+.|+|||+|||++.+  .....|..+
T Consensus       295 ~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~-----~~t~~~~IyA~GD~~~~~--~~~~~A~~~  367 (523)
T 1mo9_A          295 MTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEY-----LQTSVPNVYAVGDLIGGP--MEMFKARKS  367 (523)
T ss_dssp             EETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTT-----SBCSSTTEEECGGGGCSS--CSHHHHHHH
T ss_pred             EECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCC-----CccCCCCEEEEeecCCCc--ccHHHHHHH
Confidence                   1       0     0  0      23444 478999998     999999999999999876  578899999


Q ss_pred             HHHHHHHHHh
Q psy5231         137 GCMAALDAQR  146 (148)
Q Consensus       137 G~~aA~~i~~  146 (148)
                      |+.||.+|..
T Consensus       368 g~~aa~~i~g  377 (523)
T 1mo9_A          368 GCYAARNVMG  377 (523)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            9999999863

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.78  E-value=1.6e-18  Score=136.71  Aligned_cols=127  Identities=18%  Similarity=0.131  Sum_probs=100.1

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEec--C-
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKIIG--N-   83 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~--~-   83 (148)
                      .++++    +|||||.+|+|+|..|++.|.+||++++.+.+.   .++...+.+.+.+++.||++++++.+.++..  + 
T Consensus       148 ~~~~v----vViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~  223 (431)
T 1q1r_A          148 ADNRL----VVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ  223 (431)
T ss_dssp             TTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTT
T ss_pred             cCCeE----EEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCC
Confidence            35555    999999999999999999999999999987653   2466777777778789999999999988875  2 


Q ss_pred             Ce------------------e------------ecceeecCCeEEecCCCCcccccCCCCCeEEecccCccccc------
Q psy5231          84 NT------------------V------------TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFI------  127 (148)
Q Consensus        84 ~~------------------~------------~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~------  127 (148)
                      +.                  +            ..++++++| |.+|+.     ++|+.|+|||+|||+..+..      
T Consensus       224 ~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~g-i~Vd~~-----~~ts~~~IyA~GD~~~~~~~~~g~~~  297 (431)
T 1q1r_A          224 QKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNG-IVINEH-----MQTSDPLIMAVGDCARFHSQLYDRWV  297 (431)
T ss_dssp             CCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-EECCTT-----SBCSSTTEEECGGGEEEEETTTTEEE
T ss_pred             CcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCCCC-EEECCC-----cccCCCCEEEEEeEEEEccccCCceE
Confidence            11                  0            012344444 899998     99999999999999876411      


Q ss_pred             --hhHHHHHHHHHHHHHHHHh
Q psy5231         128 --DKQLLALGSGCMAALDAQR  146 (148)
Q Consensus       128 --~~~~~A~~~G~~aA~~i~~  146 (148)
                        ..+..|..+|+.||.+|..
T Consensus       298 ~~~~~~~A~~qg~~aa~~i~g  318 (431)
T 1q1r_A          298 RIESVPNALEQARKIAAILCG  318 (431)
T ss_dssp             ECCSHHHHHHHHHHHHHHHTT
T ss_pred             eeCHHHHHHHHHHHHHHHhcC
Confidence              1468899999999999863

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.78  E-value=2.3e-18  Score=134.52  Aligned_cols=127  Identities=14%  Similarity=0.089  Sum_probs=101.5

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-   84 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-   84 (148)
                      ..++++    +|||+|.+|+|+|..|++.|.+||++++.+.+..   ++...+.+.+.+++.||++++++.+.++..++ 
T Consensus       140 ~~~~~v----vViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~  215 (404)
T 3fg2_P          140 PDKKHV----VVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD  215 (404)
T ss_dssp             GGCSEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETT
T ss_pred             hcCCeE----EEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCC
Confidence            356677    9999999999999999999999999999877632   46677777778888999999999998886542 


Q ss_pred             e----------------------------e--ecceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc--------
Q psy5231          85 T----------------------------V--TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------  126 (148)
Q Consensus        85 ~----------------------------~--~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------  126 (148)
                      .                            +  ..++..++| |.+|+.     ++|+.|+|||+|||+..+.        
T Consensus       216 ~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~G-i~vd~~-----~~t~~~~iya~GD~a~~~~~~~g~~~~  289 (404)
T 3fg2_P          216 RVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG-IIVDQQ-----LLTSDPHISAIGDCALFESVRFGETMR  289 (404)
T ss_dssp             EEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-EEECTT-----SBCSSTTEEECGGGEEEEETTTTEEEC
T ss_pred             cEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCCCC-EEECCC-----cccCCCCEEEeecceeecCccCCceee
Confidence            1                            0  013444445 899998     9999999999999987651        


Q ss_pred             chhHHHHHHHHHHHHHHHH
Q psy5231         127 IDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus       127 ~~~~~~A~~~G~~aA~~i~  145 (148)
                      ...+..|..+|+.||.+|.
T Consensus       290 ~~~~~~A~~qg~~aa~~i~  308 (404)
T 3fg2_P          290 VESVQNATDQARCVAARLT  308 (404)
T ss_dssp             CCSHHHHHHHHHHHHHHTT
T ss_pred             ehHHHHHHHHHHHHHHHhC
Confidence            1137899999999999985

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.78  E-value=3.8e-18  Score=139.32  Aligned_cols=125  Identities=17%  Similarity=0.162  Sum_probs=96.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-hHHHHHHHHhHHhcCCcEEEcCceEEEEec------------
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-EKILIDRLMQKVNEGKIDIKLKHIVHKIIG------------   82 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~------------   82 (148)
                      ++++|||||++|+|+|..|+++|.+||+++|..-++. ++.+.+.+.+.|++.||++++++.+.++..            
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~  366 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPG  366 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCcCcCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCc
Confidence            4449999999999999999999999999999732332 566777788888889999999876655521            


Q ss_pred             ---------CCe--------------------e--e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccch
Q psy5231          83 ---------NNT--------------------V--T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFID  128 (148)
Q Consensus        83 ---------~~~--------------------~--~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~  128 (148)
                               ++.                    +  .  .+++++ .|+|.||+.     ++|+.|+|||+|||+... ..
T Consensus       367 ~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-----~~ts~~~VyA~GD~~~~~-~~  440 (598)
T 2x8g_A          367 LLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDD-----EQTTVSNVYAIGDINAGK-PQ  440 (598)
T ss_dssp             EEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTT-----SBCSSTTEEECGGGBTTS-CC
T ss_pred             eEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCC-----CcCCCCCEEEEeeecCCC-Cc
Confidence                     110                    0  0  124444 378999998     999999999999995432 25


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q psy5231         129 KQLLALGSGCMAALDAQR  146 (148)
Q Consensus       129 ~~~~A~~~G~~aA~~i~~  146 (148)
                      .+..|..+|+.||.+|..
T Consensus       441 ~~~~A~~~g~~aa~~i~~  458 (598)
T 2x8g_A          441 LTPVAIQAGRYLARRLFA  458 (598)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHhHHHHHHHHhc
Confidence            788999999999999863

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.78  E-value=2.3e-18  Score=136.98  Aligned_cols=125  Identities=17%  Similarity=0.254  Sum_probs=100.6

Q ss_pred             ceEEEEcCchHHHHHHHHHhhc-CCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecC-Ce-----
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNI-AKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN-NT-----   85 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~-~~-----   85 (148)
                      ++++|||+|.+|+|+|..|++. |.+|+++++.+.+..   ++.+.+.+.+.|++.||++++++++.++..+ +.     
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~  239 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVI  239 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEE
Confidence            3449999999999999999999 999999999876543   5677788888888899999999999988752 21     


Q ss_pred             ----------------------e--ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc--------chhHHH
Q psy5231          86 ----------------------V--TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDKQLL  132 (148)
Q Consensus        86 ----------------------~--~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~~~~  132 (148)
                                            +  ..+++++ +|+|.+|+.     ++|+.|+|||+|||+..+.        .+.+..
T Consensus       240 ~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~-----~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~  314 (472)
T 3iwa_A          240 TDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTR-----MRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSM  314 (472)
T ss_dssp             ESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTT-----CBCSSTTEEECGGGEEEEBTTTSSEECCCCTTH
T ss_pred             eCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCC-----cccCCCCEEEeccceecccccCCceeecchHHH
Confidence                                  0  0135555 488999998     9999999999999984220        135678


Q ss_pred             HHHHHHHHHHHHH
Q psy5231         133 ALGSGCMAALDAQ  145 (148)
Q Consensus       133 A~~~G~~aA~~i~  145 (148)
                      |..+|+.||.+|.
T Consensus       315 A~~~g~~aa~~i~  327 (472)
T 3iwa_A          315 ANRQGRVIGTNLA  327 (472)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999985

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.78  E-value=2.3e-18  Score=140.35  Aligned_cols=128  Identities=18%  Similarity=0.177  Sum_probs=102.7

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--   85 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--   85 (148)
                      .++++    +|||||.+|+|+|..|++.|.+|+++++.+.+..  ++...+.+.+.|++.||++++++.+.++..+..  
T Consensus       186 ~~~~v----vViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v  261 (588)
T 3ics_A          186 KPRHA----TVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVV  261 (588)
T ss_dssp             CCSEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEE
T ss_pred             CCCeE----EEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEE
Confidence            45555    9999999999999999999999999999877543  466777788888889999999999998875321  


Q ss_pred             ------------------------e--ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccc--------cchhH
Q psy5231          86 ------------------------V--TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY--------FIDKQ  130 (148)
Q Consensus        86 ------------------------~--~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~--------~~~~~  130 (148)
                                              +  ..+++++ +|+|.+|+.     ++|+.|+|||+|||+..+        ..+.+
T Consensus       262 ~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~-----~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~  336 (588)
T 3ics_A          262 RLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEK-----FQTSDPHIYAIGDAIEVKDFVTETETMIPLA  336 (588)
T ss_dssp             EETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTT-----SBCSSTTEEECGGGBCEEBTTTCCEECCCCH
T ss_pred             EECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCc-----cccCCCCEEEeeeeeecccccCCcccccccH
Confidence                                    0  0135555 488999998     999999999999998421        02467


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy5231         131 LLALGSGCMAALDAQR  146 (148)
Q Consensus       131 ~~A~~~G~~aA~~i~~  146 (148)
                      ..|..+|+.||.+|..
T Consensus       337 ~~A~~~g~~aa~~i~g  352 (588)
T 3ics_A          337 WPANRQGRMLADIIHG  352 (588)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            8899999999999864

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.78  E-value=3.5e-18  Score=135.19  Aligned_cols=126  Identities=23%  Similarity=0.329  Sum_probs=101.7

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-   85 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-   85 (148)
                      .++++    +|||||.+|+|+|..|++.|.+||++++.+++.   .++...+.+.+.|++. |++++++.+.++..++. 
T Consensus       147 ~~~~v----vViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~~v  221 (449)
T 3kd9_A          147 KVENV----VIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEERV  221 (449)
T ss_dssp             CCCEE----EEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSSSC
T ss_pred             CCCeE----EEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccCcE
Confidence            45566    999999999999999999999999999987764   3567777888888788 99999999988875431 


Q ss_pred             --------------------------e--ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCcccc--------ch
Q psy5231          86 --------------------------V--TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------ID  128 (148)
Q Consensus        86 --------------------------~--~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~  128 (148)
                                                +  ..++++++ |+|.+|+.     ++|+.|+|||+|||+..+.        ++
T Consensus       222 ~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~-----~~t~~~~IyA~GD~~~~~~~~~g~~~~~~  296 (449)
T 3kd9_A          222 EKVVTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEK-----MQTSVENVYAAGDVAETRHVITGRRVWVP  296 (449)
T ss_dssp             CEEEETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTT-----CBCSSTTEEECSTTBCEEBTTTCSEECCC
T ss_pred             EEEEeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCC-----CccCCCCEEEeeeeeeeccccCCceEEec
Confidence                                      0  01455554 78999998     9999999999999985210        24


Q ss_pred             hHHHHHHHHHHHHHHHH
Q psy5231         129 KQLLALGSGCMAALDAQ  145 (148)
Q Consensus       129 ~~~~A~~~G~~aA~~i~  145 (148)
                      .+..|..+|+.||.+|.
T Consensus       297 l~~~A~~~g~~aa~~i~  313 (449)
T 3kd9_A          297 LAPAGNKMGYVAGSNIA  313 (449)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHhc
Confidence            67899999999999985

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.77  E-value=1.2e-18  Score=138.59  Aligned_cols=126  Identities=21%  Similarity=0.220  Sum_probs=93.2

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCC--CchHHHHHHHHhHHhcCCcEEEcCceEEEEecC--
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--   83 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~--~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--   83 (148)
                      ..||+|    +|||||++|+|+|..+.+.|. +||+++|++.+  +..+...+.++    +.||++++++.+.++.++  
T Consensus       262 ~~gk~V----vVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~----~~Gv~~~~~~~~~~i~~~g~  333 (456)
T 2vdc_G          262 AAGKHV----VVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAE----EEGVEFIWQAAPEGFTGDTV  333 (456)
T ss_dssp             CCCSEE----EEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHH----HTTCEEECCSSSCCEEEEEE
T ss_pred             cCCCEE----EEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHH----HCCCEEEeCCCceEEeCCCc
Confidence            456666    999999999999999999987 59999997754  33333333343    579999887654333211  


Q ss_pred             --------------------------C--e------------e-e---------cceeecC-CeEEecCCCCcccccCCC
Q psy5231          84 --------------------------N--T------------V-T---------GQLEMND-GYIKTKLNKKTGYTSTNI  112 (148)
Q Consensus        84 --------------------------~--~------------~-~---------~~~~~~~-g~i~vd~~~~~~~~~t~~  112 (148)
                                                +  .            + .         .+++++. |+|.+|+.+    ++|+.
T Consensus       334 v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~----~~Ts~  409 (456)
T 2vdc_G          334 VTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRT----KMTNM  409 (456)
T ss_dssp             EETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTT----CBCSS
T ss_pred             EEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCC----CcCCC
Confidence                                      0  0            0 0         1234443 788888865    89999


Q ss_pred             CCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         113 SGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       113 ~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      |+|||+|||+..+  ..+..|+++|+.||.+|+++|
T Consensus       410 ~~VfA~GD~~~g~--~~v~~A~~~G~~aA~~i~~~L  443 (456)
T 2vdc_G          410 DGVFAAGDIVRGA--SLVVWAIRDGRDAAEGIHAYA  443 (456)
T ss_dssp             TTEEECGGGGSSC--CSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeccccCCc--hHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998776  689999999999999999875

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.76  E-value=4.8e-18  Score=135.08  Aligned_cols=121  Identities=18%  Similarity=0.185  Sum_probs=97.0

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-------
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-------   84 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-------   84 (148)
                      +++++|||||++|+|+|..|+++|.+||++++.+++..   +++..+.+.+.|+   |++++++++.++..++       
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v~v~  248 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVKKIKDDEYEVI  248 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEEEEETTEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEEEcCCCcEEEE
Confidence            45559999999999999999999999999999877643   5677788877664   9999888887765411       


Q ss_pred             ---------e-----------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHH
Q psy5231          85 ---------T-----------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLAL  134 (148)
Q Consensus        85 ---------~-----------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~  134 (148)
                               .                 + .  .+++++ +| |.+|+.     ++|+.|+|||+|||++.+  +....|.
T Consensus       249 ~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~~-----~~t~~~~Iya~GD~~~~~--~~~~~A~  320 (466)
T 3l8k_A          249 YSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDET-----MKTNIPNVFATGDANGLA--PYYHAAV  320 (466)
T ss_dssp             ECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCTT-----CBCSSTTEEECGGGTCSC--CSHHHHH
T ss_pred             EEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECCC-----ccCCCCCEEEEEecCCCC--ccHhHHH
Confidence                     1                 0 0  133444 37 889988     999999999999999876  6889999


Q ss_pred             HHHHHHHHHHHh
Q psy5231         135 GSGCMAALDAQR  146 (148)
Q Consensus       135 ~~G~~aA~~i~~  146 (148)
                      .+|+.||.+|..
T Consensus       321 ~~g~~aa~~i~~  332 (466)
T 3l8k_A          321 RMSIAAANNIMA  332 (466)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC
Confidence            999999999873

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.71  E-value=5.3e-17  Score=139.76  Aligned_cols=123  Identities=17%  Similarity=0.140  Sum_probs=92.2

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC---------
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN---------   83 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~---------   83 (148)
                      ++|+|||||++|+|+|..+.++|. +||+++|++.  ++..+...+.++    +.||++++++.+.++..+         
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~~~~~----~~Gv~~~~~~~~~~i~~~~g~v~~v~~  408 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAK----EEKCEFLPFLSPRKVIVKGGRIVAVQF  408 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHHHHH----HTTCEEECSEEEEEEEEETTEEEEEEE
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHHHHHH----HcCCEEEeCCCceEEEccCCeEEEEEE
Confidence            344999999999999999999995 8999999763  233344344443    589999887766655320         


Q ss_pred             --------C----------e-----------e-e---------cceeec-CCeEEecCCCCcccccCCCCCeEEecccCc
Q psy5231          84 --------N----------T-----------V-T---------GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTR  123 (148)
Q Consensus        84 --------~----------~-----------~-~---------~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~  123 (148)
                              +          .           . .         .+++++ .|+|.+|+..    ++|+.|+|||+|||+.
T Consensus       409 ~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~----~~Ts~~~VfA~GD~~~  484 (1025)
T 1gte_A          409 VRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPET----MQTSEPWVFAGGDIVG  484 (1025)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTT----CBCSSTTEEECSGGGC
T ss_pred             EEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCC----CccCCCCEEEeCCCCC
Confidence                    0          0           0 0         134555 4788898732    9999999999999998


Q ss_pred             cccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         124 LYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       124 ~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      .+  ..+..|+.+|+.||.+|+++|
T Consensus       485 ~~--~~~~~A~~~G~~aA~~i~~~L  507 (1025)
T 1gte_A          485 MA--NTTVESVNDGKQASWYIHKYI  507 (1025)
T ss_dssp             SC--CCHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc--hHHHHHHHHHHHHHHHHHHHH
Confidence            66  588999999999999998764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.71  E-value=1.4e-16  Score=122.06  Aligned_cols=132  Identities=16%  Similarity=0.075  Sum_probs=93.3

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---------chHHHHHHHHhHHhcCC-cEEEcCceE
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---------CEKILIDRLMQKVNEGK-IDIKLKHIV   77 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------~~~~~~~~l~~~l~~~~-v~i~~~~~v   77 (148)
                      .+.+++|    +|||+|.+|+|+|..|++.|.+||++++.+.+.         ..+...+.+.+.|++.| |++++++.+
T Consensus       163 ~~~~~~v----vVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v  238 (369)
T 3d1c_A          163 NFNKGQY----VVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTV  238 (369)
T ss_dssp             GSCSSEE----EEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCE
T ss_pred             hcCCCEE----EEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEE
Confidence            3456677    999999999999999999999999999976643         12455677777777886 999999998


Q ss_pred             EEEec--CCe---------e-------------------ec-ceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc
Q psy5231          78 HKIIG--NNT---------V-------------------TG-QLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF  126 (148)
Q Consensus        78 ~~i~~--~~~---------~-------------------~~-~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~  126 (148)
                      .++..  +..         +                   .. .++.++|++.+|+.+    ++|+.|+||++|||+..+.
T Consensus       239 ~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~----~~t~~~~v~a~GD~~~~~~  314 (369)
T 3d1c_A          239 KDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHD----ESTRYPNIFMIGATVENDN  314 (369)
T ss_dssp             EEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTS----BBSSSTTEEECSTTCCCSS
T ss_pred             EEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhh----cccCCCCeEEeccccccCC
Confidence            88842  110         0                   00 122123677888765    7899999999999987542


Q ss_pred             --chhHHHHHHHHHHHHHHHHhh
Q psy5231         127 --IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       127 --~~~~~~A~~~G~~aA~~i~~~  147 (148)
                        ...+..+..+|..+|.++...
T Consensus       315 ~~~~~~~~~~~~a~~~a~~l~~~  337 (369)
T 3d1c_A          315 AKLCYIYKFRARFAVLAHLLTQR  337 (369)
T ss_dssp             CCCCSHHHHGGGHHHHHHHHHHH
T ss_pred             eeEEEEehhhHHHHHHHHHHhcc
Confidence              123456678899999888643

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.68  E-value=2.6e-16  Score=126.12  Aligned_cols=126  Identities=20%  Similarity=0.278  Sum_probs=95.7

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhh----cCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSN----IAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~----~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      .++++    +|||||.+|+|+|..|++    .|.+|+++++.+.+.   ..+.+.+.+.+.+++.||++++++.|.++..
T Consensus       179 ~~~~v----vViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~  254 (493)
T 1m6i_A          179 EVKSI----TIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV  254 (493)
T ss_dssp             HCSEE----EEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEE
T ss_pred             cCCeE----EEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEe
Confidence            46666    999999999999999987    478999998865432   1355667777778889999999999988864


Q ss_pred             CC-e---------------------------ee--cceeecC--CeEEecCCCCcccccCCCCCeEEecccCcccc----
Q psy5231          83 NN-T---------------------------VT--GQLEMND--GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF----  126 (148)
Q Consensus        83 ~~-~---------------------------~~--~~~~~~~--g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~----  126 (148)
                      ++ .                           +.  .++++++  |+|.||++     ++| .|+|||+|||+..+.    
T Consensus       255 ~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~-----l~t-~~~IyA~GD~a~~~~~~~g  328 (493)
T 1m6i_A          255 SSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAE-----LQA-RSNIWVAGDAACFYDIKLG  328 (493)
T ss_dssp             ETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTT-----CEE-ETTEEECGGGEEEEETTTE
T ss_pred             cCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCC-----ccc-CCCeeEeeeeEeccCcccC
Confidence            21 0                           00  1345553  78999998     888 699999999986421    


Q ss_pred             ---chhHHHHHHHHHHHHHHHH
Q psy5231         127 ---IDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus       127 ---~~~~~~A~~~G~~aA~~i~  145 (148)
                         +..+..|..+|+.||.+|.
T Consensus       329 ~~~~~~~~~A~~qg~~aa~ni~  350 (493)
T 1m6i_A          329 RRRVEHHDHAVVSGRLAGENMT  350 (493)
T ss_dssp             EECCCCHHHHHHHHHHHHHHHT
T ss_pred             ccccchHHHHHHHHHHHHHHhc
Confidence               1245689999999999985

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.66  E-value=5e-16  Score=122.48  Aligned_cols=129  Identities=16%  Similarity=0.065  Sum_probs=94.6

Q ss_pred             CCcccceEEEEcCchHH------HHHH----HHHhhcCCe-----EEEEEeCCCC-----CchHHHHHHHHhHHhcCCcE
Q psy5231          11 IKPVIIFTDVIGGGNTA------VEEA----LYLSNIAKK-----VTLIHRNEKL-----RCEKILIDRLMQKVNEGKID   70 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g------~e~A----~~l~~~g~~-----Vtlv~~~~~~-----~~~~~~~~~l~~~l~~~~v~   70 (148)
                      ++++    +|||+|+.+      +|+|    ..+.+.|.+     ||++++.+.+     ...+...+.+.+.|++.||+
T Consensus       149 ~~~~----vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~  224 (437)
T 3sx6_A          149 EPGP----IVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE  224 (437)
T ss_dssp             SCCC----EEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCE
T ss_pred             CCCE----EEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCE
Confidence            5566    899997654      8877    455566764     9999998765     22234566677777789999


Q ss_pred             EEcCceEEEEecCCe-----------------------e----------e--cceeecCCeEEecCCCCcccccC-CCCC
Q psy5231          71 IKLKHIVHKIIGNNT-----------------------V----------T--GQLEMNDGYIKTKLNKKTGYTST-NISG  114 (148)
Q Consensus        71 i~~~~~v~~i~~~~~-----------------------~----------~--~~~~~~~g~i~vd~~~~~~~~~t-~~~~  114 (148)
                      +++++++.++.++..                       +          .  .++..+.|+|.||+.     ++| +.|+
T Consensus       225 ~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~-----l~t~~~~~  299 (437)
T 3sx6_A          225 AYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEH-----QRSKKYAN  299 (437)
T ss_dssp             EECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTT-----SBBSSCTT
T ss_pred             EEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChh-----ccCCCCCC
Confidence            999999988764321                       0          0  122112488999998     888 8999


Q ss_pred             eEEecccCcccc----------chhHHHHHHHHHHHHHHHHhhC
Q psy5231         115 VFCRWRCTRLYF----------IDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       115 vya~GD~~~~~~----------~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      |||+|||+..+.          .++...|..+|..||.||.++|
T Consensus       300 Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l  343 (437)
T 3sx6_A          300 IFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADL  343 (437)
T ss_dssp             EEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            999999987431          2578899999999999999875

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.65  E-value=1.9e-16  Score=120.16  Aligned_cols=135  Identities=13%  Similarity=0.129  Sum_probs=86.4

Q ss_pred             hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC-CCCCch----HHHHHHHHhHHh------------
Q psy5231           3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN-EKLRCE----KILIDRLMQKVN------------   65 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~~~~----~~~~~~l~~~l~------------   65 (148)
                      |+....+.++++    +|||+|.+|+|+|..|++.+ +|++++++ +.+...    ..+.+.+.+.++            
T Consensus       155 ~~~~~~~~~~~v----~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (357)
T 4a9w_A          155 YSTPAPFAGMRV----AIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPP  229 (357)
T ss_dssp             CCCSGGGTTSEE----EEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC------------------
T ss_pred             CCChhhcCCCEE----EEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCccc
Confidence            445556677787    99999999999999999998 69999986 333221    121111111111            


Q ss_pred             ----------------cCCcEEEcCceEEEEecCCe------------------------e-e-cceeecCCeEEecCC-
Q psy5231          66 ----------------EGKIDIKLKHIVHKIIGNNT------------------------V-T-GQLEMNDGYIKTKLN-  102 (148)
Q Consensus        66 ----------------~~~v~i~~~~~v~~i~~~~~------------------------~-~-~~~~~~~g~i~vd~~-  102 (148)
                                      ..++ +.....+.++..+..                        + . .++..++|++.+|+. 
T Consensus       230 ~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i~vd~~~  308 (357)
T 4a9w_A          230 GGFGDIVMVPPVLDARARGV-LAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSG  308 (357)
T ss_dssp             ----CBCCCHHHHHHHHTTC-CCEECCCSEEETTEEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTSCBCBCTTS
T ss_pred             ccccCcccChhHHHHHhcCc-eEEecCcceEeCCeeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCCCccccCCc
Confidence                            1222 222233333332211                        1 1 134422488999987 


Q ss_pred             CCcccccCCCCCeEEec--ccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         103 KKTGYTSTNISGVFCRW--RCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       103 ~~~~~~~t~~~~vya~G--D~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +    ++|+.|+||++|  ||++.+ .+.+..|..+|+.||.+|.++|
T Consensus       309 l----~~t~~~~vya~Gd~d~~~~~-~~~~~~A~~~g~~~a~~i~~~l  351 (357)
T 4a9w_A          309 L----RALAVPSVWLLGYGDWNGMA-SATLIGVTRYAREAVRQVTAYC  351 (357)
T ss_dssp             C----BBSSCTTEEECSSCGGGSTT-CSSTTTHHHHHHHHHHHHHHHT
T ss_pred             c----cCCCCCCeEEeccccccccc-hhhhhhhHHHHHHHHHHHHHHH
Confidence            5    789999999999  666532 3577889999999999999876

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.64  E-value=8.4e-16  Score=128.31  Aligned_cols=128  Identities=15%  Similarity=0.102  Sum_probs=93.6

Q ss_pred             hhcCCcccceEEEEc--CchHHHHHHHHHhhcCCeEEEEEeCCCCCch---HHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231           8 LALIKPVIIFTDVIG--GGNTAVEEALYLSNIAKKVTLIHRNEKLRCE---KILIDRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus         8 ~~~gk~v~~~v~ViG--gG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~---~~~~~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      ...+++|    +|||  ||.+|+|+|..|+++|.+||++++.+ +...   +.....+.+.|++.||++++++.+.++.+
T Consensus       525 ~~~gk~V----vVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  599 (729)
T 1o94_A          525 KKIGKRV----VILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEP  599 (729)
T ss_dssp             SCCCSEE----EEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTCHHHHHHHHHHTTCEEECSEEEEEEET
T ss_pred             CCCCCeE----EEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccccccHHHHHHHHHhCCCEEEcCcEEEEEEC
Confidence            3456666    9999  99999999999999999999999987 5431   11134556666689999999999998875


Q ss_pred             CCe-e----ecc---------------------eeec-----CCeE-----------EecCCCCcccccCCCCCeEEecc
Q psy5231          83 NNT-V----TGQ---------------------LEMN-----DGYI-----------KTKLNKKTGYTSTNISGVFCRWR  120 (148)
Q Consensus        83 ~~~-~----~~~---------------------~~~~-----~g~i-----------~vd~~~~~~~~~t~~~~vya~GD  120 (148)
                      +.. +    .++                     ++.|     .|..           .+|+.     ++|+.|+||++||
T Consensus       600 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~~vd~~-----~~t~~~~VyAiGD  674 (729)
T 1o94_A          600 GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKARESEW-----AENDIKGIYLIGD  674 (729)
T ss_dssp             TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHHTGGGT-----GGGTCCEEEECGG
T ss_pred             CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhhhcccc-----cccCCCCeEEEeC
Confidence            432 1    010                     2222     1111           12333     7899999999999


Q ss_pred             cCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         121 CTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       121 ~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      |+..   +++..|+.+|+.||.+|.++|
T Consensus       675 ~~~~---~~~~~A~~~G~~aA~~i~~~l  699 (729)
T 1o94_A          675 AEAP---RLIADATFTGHRVAREIEEAN  699 (729)
T ss_dssp             GTSC---CCHHHHHHHHHHHHHTTTSSC
T ss_pred             ccch---hhHHHHHHHHHHHHHHhhhhc
Confidence            9874   478899999999999998764

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.62  E-value=5.1e-15  Score=115.49  Aligned_cols=118  Identities=19%  Similarity=0.224  Sum_probs=88.0

Q ss_pred             HHHHHHH----HHhhcCC----eEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-----------
Q psy5231          26 TAVEEAL----YLSNIAK----KVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-----------   85 (148)
Q Consensus        26 ~g~e~A~----~l~~~g~----~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-----------   85 (148)
                      .++|+|.    .+.+.|.    +|+++++.+.+. .++...+.+.+.|++.||+++++++|+++..+..           
T Consensus       181 ~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D  260 (409)
T 3h8l_A          181 PVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPAD  260 (409)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECS
T ss_pred             HHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeee
Confidence            4677774    4556674    899999876332 2456777777788889999999999998875432           


Q ss_pred             ---e----------e-cceee-c-CCeEEecCCCCcccccC-CCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231          86 ---V----------T-GQLEM-N-DGYIKTKLNKKTGYTST-NISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus        86 ---~----------~-~~~~~-~-~g~i~vd~~~~~~~~~t-~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                         +          . .+..+ + .|++.+|+.     ++| +.|+||++|||++.+..+....|..+|..||.+|.++|
T Consensus       261 ~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~~-----~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l  335 (409)
T 3h8l_A          261 ITILLPPYTGNPALKNSTPDLVDDGGFIPTDLN-----MVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRL  335 (409)
T ss_dssp             EEEEECCEECCHHHHTSCGGGSCTTSCBCBBTT-----SBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCccHHHHhccccCcCCCCCEEeCcc-----cccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence               0          0 11122 3 488999997     888 89999999999874323678899999999999998765

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.61  E-value=3e-15  Score=124.23  Aligned_cols=134  Identities=16%  Similarity=0.026  Sum_probs=95.0

Q ss_pred             hhcCCcccceEEEEc--CchHHHHHHHHHhhcCCeEEEEEeCCCCCch---HHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231           8 LALIKPVIIFTDVIG--GGNTAVEEALYLSNIAKKVTLIHRNEKLRCE---KILIDRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus         8 ~~~gk~v~~~v~ViG--gG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~---~~~~~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      ...++++    +|||  +|.+|+|+|..|++.|++|+++++.+.+...   +.....+.+.|++.||+++++++|.++..
T Consensus       520 ~~~g~~V----vViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~  595 (690)
T 3k30_A          520 LPDGKKV----VVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGA  595 (690)
T ss_dssp             CCSSSEE----EEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEET
T ss_pred             CCCCCEE----EEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEEC
Confidence            4456666    9999  9999999999999999999999998776432   33345566666689999999999999987


Q ss_pred             CCe-ee-----cc--eeec-----CCeEEecCCCCc-c--cccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHh
Q psy5231          83 NNT-VT-----GQ--LEMN-----DGYIKTKLNKKT-G--YTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus        83 ~~~-~~-----~~--~~~~-----~g~i~vd~~~~~-~--~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~  146 (148)
                      ++. +.     .+  ++.|     .|+....+.... .  ..+|+.|+||++|||+..+   ++..|+.+|+.||.+|..
T Consensus       596 ~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~~~~~t~~~~VyaiGD~~~~~---~~~~A~~~g~~aa~~i~~  672 (690)
T 3k30_A          596 GGVTVRDTYASIERELECDAVVMVTARLPREELYLDLVARRDAGEIASVRGIGDAWAPG---TIAAAVWSGRRAAEEFDA  672 (690)
T ss_dssp             TEEEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHHHHHHTSCSEEEECGGGTSCB---CHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhhhhcccCCCCEEEEeCCCchh---hHHHHHHHHHHHHHHHHh
Confidence            643 11     11  2222     222211111000 0  0157899999999998764   677899999999999987


Q ss_pred             hC
Q psy5231         147 YL  148 (148)
Q Consensus       147 ~l  148 (148)
                      +|
T Consensus       673 ~l  674 (690)
T 3k30_A          673 VL  674 (690)
T ss_dssp             CC
T ss_pred             hc
Confidence            64

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.60  E-value=2.2e-15  Score=119.89  Aligned_cols=129  Identities=12%  Similarity=0.174  Sum_probs=89.7

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHh--------------------hcCC-eEEEEEeCCCC---------------Cc-
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLS--------------------NIAK-KVTLIHRNEKL---------------RC-   52 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~--------------------~~g~-~Vtlv~~~~~~---------------~~-   52 (148)
                      .++++    +|||+|++|+|+|..|+                    +.+. +|++++|++.+               +. 
T Consensus       144 ~~~~v----vVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~  219 (460)
T 1cjc_A          144 SCDTA----VILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGT  219 (460)
T ss_dssp             TSSEE----EEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTE
T ss_pred             CCCEE----EEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCc
Confidence            45666    99999999999999999                    5565 79999997653               10 


Q ss_pred             -------h-----------HH----HHHHHHhHHhc--------------CCcEEEcCceEEEEecC--C----------
Q psy5231          53 -------E-----------KI----LIDRLMQKVNE--------------GKIDIKLKHIVHKIIGN--N----------   84 (148)
Q Consensus        53 -------~-----------~~----~~~~l~~~l~~--------------~~v~i~~~~~v~~i~~~--~----------   84 (148)
                             +           +.    ..+.+.+.+++              .||++++++.+.+|.++  +          
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~  299 (460)
T 1cjc_A          220 RPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAV  299 (460)
T ss_dssp             EEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEE
T ss_pred             eeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEE
Confidence                   0           00    12223333334              78999998888777542  1          


Q ss_pred             ------------------e-------e------e---cce-eecC-CeEEecCCCCcccccCC-CCCeEEecccCccccc
Q psy5231          85 ------------------T-------V------T---GQL-EMND-GYIKTKLNKKTGYTSTN-ISGVFCRWRCTRLYFI  127 (148)
Q Consensus        85 ------------------~-------~------~---~~~-~~~~-g~i~vd~~~~~~~~~t~-~~~vya~GD~~~~~~~  127 (148)
                                        .       +      .   .++ +++. +++.+|+.     ++|+ .|+|||+|||+..+ .
T Consensus       300 ~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~l~gl~~~d~~g~i~vn~~-----~rt~~~p~vya~Gd~~~g~-~  373 (460)
T 1cjc_A          300 TRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKLGVVPNME-----GRVVDVPGLYCSGWVKRGP-T  373 (460)
T ss_dssp             EEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCCCCTTSCCBTTTTBCCEET-----TEETTCTTEEECTHHHHCT-T
T ss_pred             EEEccccCCCcccCCCceEEEEcCEEEECCCCCCCCCCCCcccccCCCeeECCC-----CcCcCCCCEEEEEeCCcCC-C
Confidence                              0       0      0   123 4553 66677777     8998 79999999998755 2


Q ss_pred             hhHHHHHHHHHHHHHHHHhhC
Q psy5231         128 DKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       128 ~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ..+..|+.+|+.+|.+|..+|
T Consensus       374 ~~i~~a~~~g~~aa~~i~~~l  394 (460)
T 1cjc_A          374 GVITTTMTDSFLTGQILLQDL  394 (460)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHH
Confidence            246789999999999997653

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.59  E-value=2.3e-15  Score=119.61  Aligned_cols=128  Identities=15%  Similarity=0.073  Sum_probs=89.4

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhc--------------------C-CeEEEEEeCCCCCc--h-------------
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNI--------------------A-KKVTLIHRNEKLRC--E-------------   53 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~--------------------g-~~Vtlv~~~~~~~~--~-------------   53 (148)
                      .++++    +|||+|++|+|+|..|++.                    + ++|++++|++.+..  .             
T Consensus       146 ~~~~v----vVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~  221 (456)
T 1lqt_A          146 SGARA----VVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGV  221 (456)
T ss_dssp             CSSEE----EEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTE
T ss_pred             CCCEE----EEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCc
Confidence            45566    9999999999999999974                    4 59999999765421  0             


Q ss_pred             ------HHH------------------HHHHHhHHhc------CCcEEEcCceEEEEecCCe-----e------------
Q psy5231          54 ------KIL------------------IDRLMQKVNE------GKIDIKLKHIVHKIIGNNT-----V------------   86 (148)
Q Consensus        54 ------~~~------------------~~~l~~~l~~------~~v~i~~~~~v~~i~~~~~-----~------------   86 (148)
                            +++                  .+.+.+.+++      .||++++++.+.++.+++.     +            
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~  301 (456)
T 1lqt_A          222 DVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGR  301 (456)
T ss_dssp             EEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSS
T ss_pred             eeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCccc
Confidence                  010                  2334444444      6899999988887754310     0            


Q ss_pred             ------------------------e---cceeecC-CeEEecCCCCccccc-CCCCCeEEecccCccccchhHHHHHHHH
Q psy5231          87 ------------------------T---GQLEMND-GYIKTKLNKKTGYTS-TNISGVFCRWRCTRLYFIDKQLLALGSG  137 (148)
Q Consensus        87 ------------------------~---~~~~~~~-g~i~vd~~~~~~~~~-t~~~~vya~GD~~~~~~~~~~~~A~~~G  137 (148)
                                              .   .++.++. +++.+|+.     ++ |+.|+|||+|||+..+ ...+..|..+|
T Consensus       302 ~~~~~~g~~~~i~~d~vi~a~G~~p~~l~gl~~d~~g~i~vn~~-----~rvt~~pgvya~GD~~~gp-~~~i~~a~~~g  375 (456)
T 1lqt_A          302 VAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTIPNVG-----GRINGSPNEYVVGWIKRGP-TGVIGTNKKDA  375 (456)
T ss_dssp             EEEEEEEEEEEEECSEEEECSCEECCCCTTSCCBTTTTBCCEET-----TEETTCSSEEECTHHHHCS-CSCTTHHHHHH
T ss_pred             ccccCCCceEEEEcCEEEEccccccCCCCCCcccCCCCeeECCC-----CcCCCCCCEEEEeccCCCC-chhHHHHHHHH
Confidence                                    0   0233442 55666766     67 8999999999998765 22456899999


Q ss_pred             HHHHHHHHhh
Q psy5231         138 CMAALDAQRY  147 (148)
Q Consensus       138 ~~aA~~i~~~  147 (148)
                      ..+|.+|..+
T Consensus       376 ~~~a~~i~~~  385 (456)
T 1lqt_A          376 QDTVDTLIKN  385 (456)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999765

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.58  E-value=1.5e-14  Score=123.95  Aligned_cols=120  Identities=13%  Similarity=0.106  Sum_probs=92.0

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEec--CCe--
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIG--NNT--   85 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~--~~~--   85 (148)
                      .++++    +|||+|++|+|+|..|++.|.+|+++++.+.+...       .+.|++.||++++++.+.++.+  ++.  
T Consensus       283 ~gk~v----vViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~-------~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  351 (965)
T 2gag_A          283 AGARI----AVATTNDSAYELVRELAATGGVVAVIDARSSISAA-------AAQAVADGVQVISGSVVVDTEADENGELS  351 (965)
T ss_dssp             SCSSE----EEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHH-------HHHHHHTTCCEEETEEEEEEEECTTSCEE
T ss_pred             CCCeE----EEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchh-------HHHHHhCCeEEEeCCEeEEEeccCCCCEE
Confidence            45666    99999999999999999999999999998876432       2344578999999999988875  211  


Q ss_pred             ---ee----------------------cceee-------cCCeEEecCCCCccccc-----CCCCCeEEecccCccccch
Q psy5231          86 ---VT----------------------GQLEM-------NDGYIKTKLNKKTGYTS-----TNISGVFCRWRCTRLYFID  128 (148)
Q Consensus        86 ---~~----------------------~~~~~-------~~g~i~vd~~~~~~~~~-----t~~~~vya~GD~~~~~~~~  128 (148)
                         +.                      .+...       ..+.+.+|+.     ++     |+.|+||++|||++.+   
T Consensus       352 ~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~~g~i~vd~~-----~~~~v~~ts~p~IyAaGD~a~~~---  423 (965)
T 2gag_A          352 AIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQRQGKLDWDTT-----IHAFVPADAVANQHLAGAMTGRL---  423 (965)
T ss_dssp             EEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHTTCCEEEETT-----TTEEEECSCCTTEEECGGGGTCC---
T ss_pred             EEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhCCCcEEEcCc-----ccccccCCCCCCEEEEEecCCch---
Confidence               11                      01111       1256777876     55     8999999999999775   


Q ss_pred             hHHHHHHHHHHHHHHHHhhC
Q psy5231         129 KQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       129 ~~~~A~~~G~~aA~~i~~~l  148 (148)
                      .+..|..+|+.||.+|..+|
T Consensus       424 ~l~~A~~~G~~aA~~i~~~l  443 (965)
T 2gag_A          424 DTASALSTGAATGAAAATAA  443 (965)
T ss_dssp             SHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHc
Confidence            45689999999999998764

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.57  E-value=1.2e-13  Score=100.45  Aligned_cols=65  Identities=12%  Similarity=0.143  Sum_probs=49.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC-CC-------------------------chHHHHHHHHhHHhcC-Cc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK-LR-------------------------CEKILIDRLMQKVNEG-KI   69 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~~-------------------------~~~~~~~~l~~~l~~~-~v   69 (148)
                      +|+|||||++|+++|..|++.|.+|+++++... +.                         ....+.+.+.+.+++. |+
T Consensus         5 dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~gv   84 (232)
T 2cul_A            5 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   84 (232)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCCc
Confidence            359999999999999999999999999998621 00                         0124556667777776 99


Q ss_pred             EEEcCceEEEEec
Q psy5231          70 DIKLKHIVHKIIG   82 (148)
Q Consensus        70 ~i~~~~~v~~i~~   82 (148)
                      +++ ++++.++..
T Consensus        85 ~i~-~~~v~~i~~   96 (232)
T 2cul_A           85 HLF-QATATGLLL   96 (232)
T ss_dssp             EEE-ECCEEEEEE
T ss_pred             EEE-EeEEEEEEE
Confidence            998 467877754

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.47  E-value=1.1e-13  Score=107.50  Aligned_cols=119  Identities=13%  Similarity=0.075  Sum_probs=82.7

Q ss_pred             HHHHHHHHHhhcC--CeEEEEEeCCCCCch----HHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-----------e--
Q psy5231          26 TAVEEALYLSNIA--KKVTLIHRNEKLRCE----KILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-----------V--   86 (148)
Q Consensus        26 ~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~----~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-----------~--   86 (148)
                      .++++|..+.+.+  .+|+++++.+.+...    +.+.+.+.+.|++.+|++++++++..++.+..           +  
T Consensus       168 ~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~  247 (401)
T 3vrd_B          168 RASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKA  247 (401)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEEC
T ss_pred             HHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEe
Confidence            4456666666554  789999988776443    33444455566788999999887766653221           0  


Q ss_pred             ----------------ecceeecCCeEEecCCCCcccc-cCCCCCeEEecccCcc-ccchhHHHHHHHHHHHHHHHHhhC
Q psy5231          87 ----------------TGQLEMNDGYIKTKLNKKTGYT-STNISGVFCRWRCTRL-YFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus        87 ----------------~~~~~~~~g~i~vd~~~~~~~~-~t~~~~vya~GD~~~~-~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                                      ..++..+.|+|.||+.+    + .|+.|||||+|||++. +..+....|..||..+|.||.+.|
T Consensus       248 D~vi~~~g~~~~~~~~~~gl~~~~G~i~VD~~t----l~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l  323 (401)
T 3vrd_B          248 AVINLIPPQRAGKIAQSASLTNDSGWCPVDIRT----FESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALL  323 (401)
T ss_dssp             SEEEECCCEEECHHHHHTTCCCTTSSBCBCTTT----CBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCcCCchhHhhccccccCCCEEECCCc----ceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence                            01333235899999874    5 5899999999999864 213577889999999999998753

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.46  E-value=5.4e-13  Score=105.04  Aligned_cols=105  Identities=10%  Similarity=-0.016  Sum_probs=74.5

Q ss_pred             CeEEEEEeCCCCCc-----hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe------------------e---------
Q psy5231          39 KKVTLIHRNEKLRC-----EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------------------V---------   86 (148)
Q Consensus        39 ~~Vtlv~~~~~~~~-----~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------------------~---------   86 (148)
                      .+|++++..+.+..     .+...+.+.+.|++.||++++++.|++++.+..                  +         
T Consensus       180 v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~~~  259 (430)
T 3hyw_A          180 VPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGPEV  259 (430)
T ss_dssp             CCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECCHH
T ss_pred             ceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCchH
Confidence            46888887654421     234555666667789999999999999875432                  0         


Q ss_pred             --ecc--eeecC-CeEEecCCCCccccc-CCCCCeEEecccCcccc----------chhHHHHHHHHHHHHHHHHhhC
Q psy5231          87 --TGQ--LEMND-GYIKTKLNKKTGYTS-TNISGVFCRWRCTRLYF----------IDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus        87 --~~~--~~~~~-g~i~vd~~~~~~~~~-t~~~~vya~GD~~~~~~----------~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                        ..+  +..+. +++.+|++     ++ |+.|+|||+|||+..+.          ++....|..+|..+|.||.+.|
T Consensus       260 ~~~~~~~l~~~~~g~i~vd~~-----lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l  332 (430)
T 3hyw_A          260 VASAGDKVANPANKMVIVNRC-----FQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDI  332 (430)
T ss_dssp             HHTTCTTTBCTTTCCBCCCTT-----SBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccccccCCceEEEeccc-----ccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHh
Confidence              011  22233 67888988     77 89999999999986431          2456789999999999998653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.42  E-value=9.7e-13  Score=104.63  Aligned_cols=120  Identities=11%  Similarity=-0.034  Sum_probs=82.3

Q ss_pred             hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231           3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      |+....+.+|+|    +|||+|.+|+|+|..|++.|++|+++++++.+....         + ..||+++  ..|.++.+
T Consensus       189 ~~~~~~~~~k~V----vVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~---------~-~~~V~~~--~~V~~i~~  252 (464)
T 2xve_A          189 FRDALEFKDKTV----LLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYK---------W-PENWDER--PNLVRVDT  252 (464)
T ss_dssp             CCCGGGGTTSEE----EEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCC---------C-CTTEEEC--SCEEEECS
T ss_pred             hCCHhHcCCCEE----EEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCC---------C-CCceEEc--CCeEEEeC
Confidence            445555677777    999999999999999999999999999987653321         1 2467766  45666654


Q ss_pred             CCe-------------------------eec--ceeecCC-eE-EecCCCCcccccCCCCCeEEecccCccccchhHHHH
Q psy5231          83 NNT-------------------------VTG--QLEMNDG-YI-KTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLA  133 (148)
Q Consensus        83 ~~~-------------------------~~~--~~~~~~g-~i-~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A  133 (148)
                      +..                         +..  ++.++++ ++ ......    +.|+.|+||++||+....   ....|
T Consensus       253 ~~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v~~~~~~~----~~t~~p~i~aiGd~~~~~---~~~~a  325 (464)
T 2xve_A          253 ENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGV----VWEDNPKFFYIGMQDQWY---SFNMF  325 (464)
T ss_dssp             SEEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCCSSEETTT----EESSSTTEEECSCSCCSS---CHHHH
T ss_pred             CEEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcccccccceE----ecCCCCCEEEEeCccccc---chHHH
Confidence            321                         111  2223322 32 111121    679999999999997654   57888


Q ss_pred             HHHHHHHHHHHH
Q psy5231         134 LGSGCMAALDAQ  145 (148)
Q Consensus       134 ~~~G~~aA~~i~  145 (148)
                      ..+|+.+|.++.
T Consensus       326 ~~qa~~~a~~l~  337 (464)
T 2xve_A          326 DAQAWYARDVIM  337 (464)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            899999998875

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.41  E-value=1.6e-12  Score=107.60  Aligned_cols=129  Identities=16%  Similarity=0.116  Sum_probs=84.9

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCC-------------------------------------eEEEEEeCCCCC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-------------------------------------KVTLIHRNEKLR   51 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-------------------------------------~Vtlv~~~~~~~   51 (148)
                      ..+++|    +|||||++|+|+|..|++.|.                                     +|+++++.+...
T Consensus       492 ~~~~~V----vVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l  567 (671)
T 1ps9_A          492 PVGNKV----AIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKP  567 (671)
T ss_dssp             CCCSEE----EEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCT
T ss_pred             CCCCeE----EEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhh
Confidence            345566    999999999999999998773                                     566777654322


Q ss_pred             c---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-e-ecc----eeec-----CCeEEecCCCCcccccCCCCCeEE
Q psy5231          52 C---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-V-TGQ----LEMN-----DGYIKTKLNKKTGYTSTNISGVFC  117 (148)
Q Consensus        52 ~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-~-~~~----~~~~-----~g~i~vd~~~~~~~~~t~~~~vya  117 (148)
                      .   .+.....+++.|++.||++++++++.++.+++. + .++    ++.|     .|+....+..  ..+++..++||+
T Consensus       568 ~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~l~--~~l~~~g~~v~a  645 (671)
T 1ps9_A          568 GQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPNRALA--QPLIDSGKTVHL  645 (671)
T ss_dssp             TTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCEEECCTTH--HHHHTTTCCEEE
T ss_pred             ccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCccccHHHH--HHHHhcCCCEEE
Confidence            1   223334445556679999999999999876432 2 111    2222     2332211110  013445689999


Q ss_pred             ecccCccccchhHHHHHHHHHHHHHHH
Q psy5231         118 RWRCTRLYFIDKQLLALGSGCMAALDA  144 (148)
Q Consensus       118 ~GD~~~~~~~~~~~~A~~~G~~aA~~i  144 (148)
                      +|||+... ...+..|+.+|..||.+|
T Consensus       646 iGD~~~~~-~~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          646 IGGCDVAM-ELDARRAIAQGTRLALEI  671 (671)
T ss_dssp             CGGGTCCS-SCCHHHHHHHHHHHHHHC
T ss_pred             ECCcCccC-chhHHHHHHHHHHHHHhC
Confidence            99998765 236899999999999875

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=99.41  E-value=1e-14  Score=110.79  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhh--cCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN--IAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+-+|..|++  .|.+|+|+++.+.+
T Consensus        67 DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            45999999999999999975  59999999987654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.39  E-value=5.1e-12  Score=90.39  Aligned_cols=38  Identities=21%  Similarity=-0.080  Sum_probs=33.6

Q ss_pred             ccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         108 TSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       108 ~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +.++.++||++||++.++   .+..|+.+|+.||..|.++|
T Consensus       290 ~~~~~~~v~l~GDa~~g~---gv~~A~~sG~~aA~~I~~~L  327 (336)
T 3kkj_A          290 LSDADLGIYVCGDWCLSG---RVEGAWLSGQEAARRLLEHL  327 (336)
T ss_dssp             EEETTTTEEECCGGGTTS---SHHHHHHHHHHHHHHHHHHT
T ss_pred             eeeCCCCEEEEecccCCc---CHHHHHHHHHHHHHHHHHHh
Confidence            567889999999998765   58899999999999999886

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.29  E-value=1.4e-11  Score=97.33  Aligned_cols=37  Identities=27%  Similarity=0.437  Sum_probs=32.7

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKL   50 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~   50 (148)
                      .+++|    +|||||.+|+|+|..|++.  +.+|++++|++.+
T Consensus       226 ~~~~v----vVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          226 KPMKI----AIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             -CEEE----EEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCCeE----EEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            35566    9999999999999999999  9999999998765

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.27  E-value=2.7e-11  Score=95.56  Aligned_cols=122  Identities=10%  Similarity=-0.010  Sum_probs=81.6

Q ss_pred             hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCe-EEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231           3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKK-VTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKII   81 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~   81 (148)
                      |+....+.+|+|    +|||+|++|+|+|..|++.+++ |++++|++.+             ++..||.+.  ..|.++.
T Consensus       204 ~~~~~~~~~k~V----vVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~-------------l~~~~i~~~--~~v~~~~  264 (447)
T 2gv8_A          204 FREPELFVGESV----LVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD-------------IQNESLQQV--PEITKFD  264 (447)
T ss_dssp             CCCGGGGTTCCE----EEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS-------------CBCSSEEEE--CCEEEEE
T ss_pred             cCChhhcCCCEE----EEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc-------------CCCCCeEEe--cCeEEEe
Confidence            555566678888    9999999999999999999999 9999998765             235677643  5666664


Q ss_pred             cCC--e-eec--------------c----eee------c--CCeEEecCCCCcc----cccCCCCCeEEecccCccccch
Q psy5231          82 GNN--T-VTG--------------Q----LEM------N--DGYIKTKLNKKTG----YTSTNISGVFCRWRCTRLYFID  128 (148)
Q Consensus        82 ~~~--~-~~~--------------~----~~~------~--~g~i~vd~~~~~~----~~~t~~~~vya~GD~~~~~~~~  128 (148)
                      .++  . +.+              +    .++      +  .+.+.+|.....+    -+.++.|++|++||+....   
T Consensus       265 ~~~~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~---  341 (447)
T 2gv8_A          265 PTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV---  341 (447)
T ss_dssp             TTTTEEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSC---
T ss_pred             cCCCEEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEecccccc---
Confidence            321  1 100              0    011      1  1123333321111    1237899999999997654   


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q psy5231         129 KQLLALGSGCMAALDAQR  146 (148)
Q Consensus       129 ~~~~A~~~G~~aA~~i~~  146 (148)
                      ....|..+|+.+|.++..
T Consensus       342 ~~~~a~~qa~~~a~~~~g  359 (447)
T 2gv8_A          342 PFPTSQAQAAFLARVWSG  359 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             CchHHHHHHHHHHHHHcC
Confidence            678889999999998853

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.18  E-value=7.1e-11  Score=94.50  Aligned_cols=46  Identities=7%  Similarity=0.005  Sum_probs=39.4

Q ss_pred             CCeEE-ecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231          94 DGYIK-TKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus        94 ~g~i~-vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      .|++. +|++     ++ +.|+||++|||++.+   .+..|..+|+.||.+|..+|
T Consensus       330 ~g~i~~vd~~-----~~-s~~~vya~GD~~~~~---~~~~A~~~g~~aa~~i~~~l  376 (493)
T 1y56_A          330 GYYSPVLDEY-----HR-IKDGIYVAGSAVSIK---PHYANYLEGKLVGAYILKEF  376 (493)
T ss_dssp             TEEEECCCTT-----SE-EETTEEECSTTTCCC---CHHHHHHHHHHHHHHHHHHT
T ss_pred             Cceeeccccc-----cC-cCCCEEEEeccCCcc---CHHHHHHHHHHHHHHHHHHc
Confidence            47776 7888     88 999999999998765   68899999999999998754

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.17  E-value=1.9e-10  Score=85.84  Aligned_cols=66  Identities=15%  Similarity=0.205  Sum_probs=50.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-CCeEEEEEeCCCCC----------------------------------------chHH
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHRNEKLR----------------------------------------CEKI   55 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~~----------------------------------------~~~~   55 (148)
                      +|+|||||++|+.+|..|++. |.+|+|+++.+.+.                                        ....
T Consensus        41 dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~  120 (284)
T 1rp0_A           41 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAAL  120 (284)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHHH
T ss_pred             CEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHHH
Confidence            349999999999999999997 99999999875432                                        1123


Q ss_pred             HHHHHHhHHhc-CCcEEEcCceEEEEec
Q psy5231          56 LIDRLMQKVNE-GKIDIKLKHIVHKIIG   82 (148)
Q Consensus        56 ~~~~l~~~l~~-~~v~i~~~~~v~~i~~   82 (148)
                      +...+.+.+.+ .|+++++++.+.++..
T Consensus       121 ~~~~l~~~~~~~~gv~i~~~~~V~~i~~  148 (284)
T 1rp0_A          121 FTSTIMSKLLARPNVKLFNAVAAEDLIV  148 (284)
T ss_dssp             HHHHHHHHHHTSTTEEEEETEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCEEEcCcEEEEEEe
Confidence            44455555544 7999999999988753

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.14  E-value=2e-10  Score=93.17  Aligned_cols=45  Identities=20%  Similarity=0.100  Sum_probs=39.1

Q ss_pred             EEecCCCCcccccC-CCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231          97 IKTKLNKKTGYTST-NISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus        97 i~vd~~~~~~~~~t-~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      |..|+.     ++| +++|+|+|||.+++.  ..+..|+.+|.++|..|.++|
T Consensus       497 i~~~~~-----~~~~~~~gly~~GegaG~a--~gi~~Aa~~G~~~a~~i~~~~  542 (549)
T 3nlc_A          497 IKRGKD-----FQSVNLKGFYPAGEGAGYA--GGILSAGIDGIKVAEAVARDI  542 (549)
T ss_dssp             CCCTTT-----TSCTTCBTEEECHHHHTSC--CSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCC-----ceECCcCCEEEccccCChh--hHHHHHHHHHHHHHHHHHHHh
Confidence            556666     888 899999999999987  689999999999999998764

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.95  E-value=8.4e-09  Score=78.76  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=29.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~   37 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46999999999999999999999999999854

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.78  E-value=9.7e-08  Score=76.00  Aligned_cols=31  Identities=32%  Similarity=0.498  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..|++.|.+|+|+++.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3599999999999999999999999999985

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.69  E-value=1.4e-07  Score=76.36  Aligned_cols=40  Identities=25%  Similarity=0.278  Sum_probs=35.1

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      .....+|+|    +|||+|.+|+|+|..|++.+.+||+++|.+.
T Consensus       173 ~~~~~~krV----~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          173 GKSLAGRRV----GVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             SCCCTTSEE----EEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ccccccceE----EEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            344566777    9999999999999999999999999999876

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.63  E-value=1.8e-07  Score=69.96  Aligned_cols=67  Identities=22%  Similarity=0.268  Sum_probs=55.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---------------------hHHHHHHHHhHHhcCCcEEEcCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---------------------EKILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~~~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      +|+|||||+.|+.+|..|++.|.+|+++++.+.+.+                     ...+...+.+.+++.++++++++
T Consensus         9 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (332)
T 3lzw_A            9 DITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLEQ   88 (332)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEccC
Confidence            459999999999999999999999999999764321                     23556677777777899999999


Q ss_pred             eEEEEecC
Q psy5231          76 IVHKIIGN   83 (148)
Q Consensus        76 ~v~~i~~~   83 (148)
                      +|.++..+
T Consensus        89 ~v~~i~~~   96 (332)
T 3lzw_A           89 AVESVEKQ   96 (332)
T ss_dssp             CEEEEEEC
T ss_pred             EEEEEEEC
Confidence            99988754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.59  E-value=1.9e-07  Score=70.33  Aligned_cols=67  Identities=13%  Similarity=0.151  Sum_probs=54.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc----------------------------------hHHHHHHHHh
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC----------------------------------EKILIDRLMQ   62 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------------------~~~~~~~l~~   62 (148)
                      +|+|||||+.|+.+|..|++.|.+|+++++.+.+.+                                  ...+.+.+.+
T Consensus         5 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (357)
T 4a9w_A            5 DVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLAQ   84 (357)
T ss_dssp             EEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHHH
Confidence            459999999999999999999999999998754210                                  0456666777


Q ss_pred             HHhcCCcEEEcCceEEEEecC
Q psy5231          63 KVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus        63 ~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      .+++.|++++++++|.++..+
T Consensus        85 ~~~~~~~~~~~~~~v~~i~~~  105 (357)
T 4a9w_A           85 YEQKYALPVLRPIRVQRVSHF  105 (357)
T ss_dssp             HHHHTTCCEECSCCEEEEEEE
T ss_pred             HHHHcCCEEEcCCEEEEEEEC
Confidence            777889999999999887653

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.54  E-value=6e-07  Score=71.87  Aligned_cols=67  Identities=16%  Similarity=0.134  Sum_probs=53.5

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc------h-----------------------------HHHHHHH
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC------E-----------------------------KILIDRL   60 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------~-----------------------------~~~~~~l   60 (148)
                      .+|+|||||++|+.+|..|++.|.+|+|+++.+.+..      .                             ..+.+.+
T Consensus        93 ~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L  172 (497)
T 2bry_A           93 TKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLL  172 (497)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHH
Confidence            3559999999999999999999999999998765421      0                             2344556


Q ss_pred             HhHHhcCCcEEEcCceEEEEec
Q psy5231          61 MQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus        61 ~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      .+.+++.|+++++++++.++..
T Consensus       173 ~~~~~~~gv~v~~~~~v~~i~~  194 (497)
T 2bry_A          173 LKVALLLGVEIHWGVKFTGLQP  194 (497)
T ss_dssp             HHHHHHTTCEEEESCEEEEEEC
T ss_pred             HHHHHhCCCEEEeCCEEEEEEE
Confidence            6666678999999999998864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.49  E-value=6.2e-07  Score=67.14  Aligned_cols=69  Identities=23%  Similarity=0.233  Sum_probs=54.0

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC----C----------------CC---chHHHHHHHHhHHhcCCcE
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE----K----------------LR---CEKILIDRLMQKVNEGKID   70 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~----~----------------~~---~~~~~~~~l~~~l~~~~v~   70 (148)
                      ..++|+|||||+.|+.+|..|++.|.+|+|+++.+    .                +.   ...++.+.+.+.+++.|++
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  100 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE  100 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence            34567999999999999999999999999999843    1                11   1235667777777788999


Q ss_pred             EEcCceEEEEecC
Q psy5231          71 IKLKHIVHKIIGN   83 (148)
Q Consensus        71 i~~~~~v~~i~~~   83 (148)
                      +++++ +.++..+
T Consensus       101 i~~~~-v~~i~~~  112 (338)
T 3itj_A          101 IITET-VSKVDLS  112 (338)
T ss_dssp             EECSC-EEEEECS
T ss_pred             EEEeE-EEEEEEc
Confidence            99887 8787654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.43  E-value=1.2e-06  Score=65.82  Aligned_cols=67  Identities=13%  Similarity=0.117  Sum_probs=53.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---------------------hHHHHHHHHhHHhcCCcEEEcCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---------------------EKILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~~~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+.+.+                     ...+.+.+.+.+++.++++++++
T Consensus         7 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   86 (335)
T 2zbw_A            7 DVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLGE   86 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEESC
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCC
Confidence            459999999999999999999999999998654321                     13455666666777889999899


Q ss_pred             eEEEEecC
Q psy5231          76 IVHKIIGN   83 (148)
Q Consensus        76 ~v~~i~~~   83 (148)
                      .|.++..+
T Consensus        87 ~v~~i~~~   94 (335)
T 2zbw_A           87 RAETLERE   94 (335)
T ss_dssp             CEEEEEEE
T ss_pred             EEEEEEEC
Confidence            99887654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.39  E-value=1.7e-06  Score=65.80  Aligned_cols=67  Identities=21%  Similarity=0.193  Sum_probs=53.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---------------------hHHHHHHHHhHHhcCCcEEEcCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---------------------EKILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~~~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+.+.+                     ...+.+.+.+.+++.++++++++
T Consensus        16 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   95 (360)
T 3ab1_A           16 DLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVLNE   95 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEECSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEcCC
Confidence            459999999999999999999999999998654311                     13455667777777899999999


Q ss_pred             eEEEEecC
Q psy5231          76 IVHKIIGN   83 (148)
Q Consensus        76 ~v~~i~~~   83 (148)
                      .|.++..+
T Consensus        96 ~v~~i~~~  103 (360)
T 3ab1_A           96 TVTKYTKL  103 (360)
T ss_dssp             CEEEEEEC
T ss_pred             EEEEEEEC
Confidence            99888754

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.36  E-value=2.1e-06  Score=65.91  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=30.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+.+|..|++.|.+|+|+++.+.+
T Consensus        13 dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~   46 (379)
T 3alj_A           13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL   46 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            3499999999999999999999999999986543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.34  E-value=2.7e-06  Score=63.18  Aligned_cols=66  Identities=21%  Similarity=0.241  Sum_probs=51.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC--CC---------CCc-----hHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN--EK---------LRC-----EKILIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~---------~~~-----~~~~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.  ..         +..     ...+.+.+.+.+++.|+++++ +.+.++
T Consensus        17 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i   95 (323)
T 3f8d_A           17 DVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEKI   95 (323)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEEE
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEEE
Confidence            5599999999999999999999999999985  10         111     235666677777788999998 788887


Q ss_pred             ecC
Q psy5231          81 IGN   83 (148)
Q Consensus        81 ~~~   83 (148)
                      ..+
T Consensus        96 ~~~   98 (323)
T 3f8d_A           96 ENR   98 (323)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.33  E-value=1.4e-06  Score=68.44  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+.+|..|++.|.+|+|+++.+.
T Consensus        29 dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~   61 (417)
T 3v76_A           29 DVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA   61 (417)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            349999999999999999999999999998654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.30  E-value=1.5e-06  Score=69.03  Aligned_cols=62  Identities=19%  Similarity=0.282  Sum_probs=49.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      ++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.+           ...+.++..+.+++.|+++++++.+
T Consensus       123 ~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  195 (456)
T 2vdc_G          123 LSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEV  195 (456)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCB
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEe
Confidence            3459999999999999999999999999999765421           2345566666777899999998765

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.28  E-value=4.6e-06  Score=63.32  Aligned_cols=66  Identities=17%  Similarity=0.289  Sum_probs=50.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCCC--------------------------------------------
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKLR--------------------------------------------   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~--------------------------------------------   51 (148)
                      +|+|||||++|+.+|..|++.|. +|+|+++.+ +.                                            
T Consensus         6 ~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   84 (369)
T 3d1c_A            6 KVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH   84 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence            45999999999999999999998 999999864 10                                            


Q ss_pred             -chHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231          52 -CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus        52 -~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                       ....+...+.+.+++.|+++++++.|.++..+
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~  117 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISAD  117 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEC
Confidence             00223344555556789999999999888654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.23  E-value=4.3e-06  Score=65.19  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+.+|..|++.|.+|+|+++.+.
T Consensus         6 dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~   38 (401)
T 2gqf_A            6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (401)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            359999999999999999999999999998654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.21  E-value=6.3e-06  Score=61.15  Aligned_cols=66  Identities=18%  Similarity=0.206  Sum_probs=51.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC-----------CCC-----chHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE-----------KLR-----CEKILIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-----------~~~-----~~~~~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      +|+|||||+.|+.+|..|++.|.+|+++++..           .+.     ..+.+.+.+.+.+++.+++++.++++..+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            46999999999999999999999999997531           011     12355666777777889999999889888


Q ss_pred             ec
Q psy5231          81 IG   82 (148)
Q Consensus        81 ~~   82 (148)
                      ..
T Consensus        83 ~~   84 (310)
T 1fl2_A           83 IP   84 (310)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.19  E-value=7.7e-06  Score=60.03  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=49.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC----------CCc-----hHHHHHHHHhHHhcC-CcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK----------LRC-----EKILIDRLMQKVNEG-KIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~----------~~~-----~~~~~~~l~~~l~~~-~v~i~~~~~v~~i   80 (148)
                      +|+|||||+.|+.+|..|++.|.+|+++++.+.          +..     ...+.+.+.+.+++. ++.++. +++.++
T Consensus         4 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i   82 (297)
T 3fbs_A            4 DVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVE-GRVTDA   82 (297)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEE-SCEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEE-eEEEEE
Confidence            459999999999999999999999999997431          111     135566677777665 788875 477777


Q ss_pred             ecC
Q psy5231          81 IGN   83 (148)
Q Consensus        81 ~~~   83 (148)
                      ..+
T Consensus        83 ~~~   85 (297)
T 3fbs_A           83 KGS   85 (297)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            644

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.18  E-value=6.2e-06  Score=61.04  Aligned_cols=63  Identities=14%  Similarity=0.184  Sum_probs=50.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEE-EEeCCCC-------------Cc------hHHHHHHHHhHHhcCCcEEEcCc
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTL-IHRNEKL-------------RC------EKILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtl-v~~~~~~-------------~~------~~~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      ++|+|||||+.|+.+|..|++.|.+|++ +++. .+             +.      ..++...+.+.+++.+++++.+ 
T Consensus         5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-   82 (315)
T 3r9u_A            5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV-   82 (315)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC-
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE-
Confidence            3569999999999999999999999999 9873 21             11      1356677777777889999987 


Q ss_pred             eEEEE
Q psy5231          76 IVHKI   80 (148)
Q Consensus        76 ~v~~i   80 (148)
                      ++.++
T Consensus        83 ~v~~i   87 (315)
T 3r9u_A           83 GVEQI   87 (315)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            67777

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.16  E-value=1.2e-06  Score=67.90  Aligned_cols=67  Identities=22%  Similarity=0.161  Sum_probs=49.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhh---cCCeEEEEEeCCCCCc-------------hHHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSN---IAKKVTLIHRNEKLRC-------------EKILIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~---~g~~Vtlv~~~~~~~~-------------~~~~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      ++|+|||||.+|+.+|..|++   .|.+|+|+++.+.+..             .+++...+.+.+++.|++++.+ ++.+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            456999999999999999999   8999999998754310             1112223444445689999976 7888


Q ss_pred             EecC
Q psy5231          80 IIGN   83 (148)
Q Consensus        80 i~~~   83 (148)
                      +..+
T Consensus        81 i~~~   84 (409)
T 3h8l_A           81 IDAK   84 (409)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            7654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.15  E-value=1.1e-05  Score=59.85  Aligned_cols=65  Identities=12%  Similarity=0.190  Sum_probs=50.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCC------------CCc------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEK------------LRC------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~------------~~~------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      +|+|||||+.|+.+|..|++.|. +|+++++...            +..      ...+.+.+.+.+++.|++++. +++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            56999999999999999999999 9999998421            111      134566676677788999987 677


Q ss_pred             EEEec
Q psy5231          78 HKIIG   82 (148)
Q Consensus        78 ~~i~~   82 (148)
                      .++..
T Consensus        82 ~~i~~   86 (311)
T 2q0l_A           82 QRVSK   86 (311)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.14  E-value=1.4e-06  Score=69.02  Aligned_cols=35  Identities=29%  Similarity=0.306  Sum_probs=30.4

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      |+|+|||+|..|+-+|..|++.|++|+|+|+.+.+
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~   36 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP   36 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence            56799999999999999999999999999997654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.14  E-value=1.3e-05  Score=61.77  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+.+|..|++.|.+|+|+++.+.
T Consensus         8 dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~   40 (399)
T 2x3n_A            8 DVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR   40 (399)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            459999999999999999999999999998643

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.14  E-value=1.4e-05  Score=59.66  Aligned_cols=65  Identities=12%  Similarity=0.069  Sum_probs=49.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC------------CCc-----hHHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK------------LRC-----EKILIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~------------~~~-----~~~~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++...            +..     ...+.+.+.+.+++.+++++. +++.+
T Consensus        18 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   96 (319)
T 3cty_A           18 DVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVRS   96 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEEE
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEEE
Confidence            459999999999999999999999999998421            111     134556666667778999987 67777


Q ss_pred             Eec
Q psy5231          80 IIG   82 (148)
Q Consensus        80 i~~   82 (148)
                      +..
T Consensus        97 i~~   99 (319)
T 3cty_A           97 IKK   99 (319)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.13  E-value=1.9e-06  Score=67.62  Aligned_cols=68  Identities=16%  Similarity=0.197  Sum_probs=49.7

Q ss_pred             ceEEEEcCchHHHHHHHHHhh---cCCeEEEEEeCCCCCch-------------HHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSN---IAKKVTLIHRNEKLRCE-------------KILIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~---~g~~Vtlv~~~~~~~~~-------------~~~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      ++|+|||||+.|+.+|..|++   .+.+||||++.+.+...             .++...+.+.+++.|++++. .++.+
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            345999999999999999999   79999999987754211             12222234455578999984 67888


Q ss_pred             EecCC
Q psy5231          80 IIGNN   84 (148)
Q Consensus        80 i~~~~   84 (148)
                      +..+.
T Consensus        84 id~~~   88 (437)
T 3sx6_A           84 IDAEA   88 (437)
T ss_dssp             EETTT
T ss_pred             EEcCC
Confidence            87543

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.13  E-value=2.1e-05  Score=63.50  Aligned_cols=39  Identities=18%  Similarity=0.262  Sum_probs=33.8

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      .+.+|+|    +|||+|.+|+|+|..|++.+.+|+++.|.+.+
T Consensus       183 ~~~gk~V----~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          183 DFSGQRV----GVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             CCBTCEE----EEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             ccCCCEE----EEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            3456777    99999999999999999999999999987643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.11  E-value=1.6e-05  Score=59.46  Aligned_cols=66  Identities=15%  Similarity=0.257  Sum_probs=50.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC------------CCc------hHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK------------LRC------EKILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~------------~~~------~~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++...            +..      ...+.+.+.+.+++.|++++. +++.
T Consensus        10 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   88 (325)
T 2q7v_A           10 DVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEVQ   88 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeEE
Confidence            459999999999999999999999999998621            111      134556666667778999987 5777


Q ss_pred             EEecC
Q psy5231          79 KIIGN   83 (148)
Q Consensus        79 ~i~~~   83 (148)
                      ++..+
T Consensus        89 ~i~~~   93 (325)
T 2q7v_A           89 GVQHD   93 (325)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            77643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.11  E-value=6.5e-06  Score=68.30  Aligned_cols=62  Identities=18%  Similarity=0.098  Sum_probs=48.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-------------hHHHHHHHHhHHhcC-CcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-------------EKILIDRLMQKVNEG-KIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------~~~~~~~l~~~l~~~-~v~i~~~~~v   77 (148)
                      ++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.+             ...+.+.+.+.+++. ++++++++.+
T Consensus       392 ~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v  467 (690)
T 3k30_A          392 ARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPM  467 (690)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCC
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCee
Confidence            4569999999999999999999999999999765532             123455566666676 9999988765

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.11  E-value=9e-06  Score=60.91  Aligned_cols=65  Identities=18%  Similarity=0.126  Sum_probs=49.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe----CCCCC-------------------chHHHHHHHHhHHhcCCcEEEc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR----NEKLR-------------------CEKILIDRLMQKVNEGKIDIKL   73 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~----~~~~~-------------------~~~~~~~~l~~~l~~~~v~i~~   73 (148)
                      +|+|||||+.|+.+|..|++.|.+|+++++    ...+.                   ....+.+.+.+.+++.+++++.
T Consensus        10 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~   89 (333)
T 1vdc_A           10 RLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFT   89 (333)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEEE
Confidence            459999999999999999999999999997    22110                   0134556666667778999998


Q ss_pred             CceEEEEec
Q psy5231          74 KHIVHKIIG   82 (148)
Q Consensus        74 ~~~v~~i~~   82 (148)
                      ++ +..+..
T Consensus        90 ~~-v~~i~~   97 (333)
T 1vdc_A           90 ET-VTKVDF   97 (333)
T ss_dssp             CC-CCEEEC
T ss_pred             eE-EEEEEE
Confidence            76 767654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.10  E-value=3.5e-06  Score=66.36  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCch---------H------HHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRCE---------K------ILIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~---------~------~~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      +|+|||||+.|+.+|..|++.  +.+|+++++.+.+...         .      .+.....+.+++.++++++++.+.+
T Consensus         4 ~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~~   83 (452)
T 3oc4_A            4 KIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVVA   83 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEEE
Confidence            459999999999999999998  8999999987654310         0      0101123445578999999999988


Q ss_pred             EecCC
Q psy5231          80 IIGNN   84 (148)
Q Consensus        80 i~~~~   84 (148)
                      +..+.
T Consensus        84 id~~~   88 (452)
T 3oc4_A           84 MDVEN   88 (452)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            87543

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.08  E-value=7e-06  Score=64.55  Aligned_cols=67  Identities=18%  Similarity=0.205  Sum_probs=46.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCch--------------HHHHHHHHhHH-hcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRCE--------------KILIDRLMQKV-NEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~--------------~~~~~~l~~~l-~~~~v~i~~~~~v~~   79 (148)
                      +|+|||||+.|+.+|..|++.  +.+|+++++.+.+...              ..+.....+.+ ++.++++++++++.+
T Consensus         5 ~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v~~   84 (449)
T 3kd9_A            5 KVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEVIE   84 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEEEE
T ss_pred             cEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEEEE
Confidence            459999999999999999998  7899999997643211              11112222233 468999999999988


Q ss_pred             EecC
Q psy5231          80 IIGN   83 (148)
Q Consensus        80 i~~~   83 (148)
                      +..+
T Consensus        85 i~~~   88 (449)
T 3kd9_A           85 VDTG   88 (449)
T ss_dssp             ECSS
T ss_pred             EecC
Confidence            7654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.08  E-value=1e-05  Score=64.13  Aligned_cols=33  Identities=6%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhh---cCCe---EEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN---IAKK---VTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~---~g~~---Vtlv~~~~~   49 (148)
                      +|+|||||++|+.+|..|++   .|.+   |+++++.+.
T Consensus         4 ~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~   42 (464)
T 2xve_A            4 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQAD   42 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSS
T ss_pred             cEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCC
Confidence            45999999999999999999   9999   999998654

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.07  E-value=1.5e-05  Score=62.78  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+.+|..|++.|.+|+|+++.+
T Consensus        28 dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~   59 (447)
T 2i0z_A           28 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   59 (447)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            45999999999999999999999999999865

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.06  E-value=1.8e-05  Score=64.13  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=30.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|.+|+.+|..|++.|.+|+|+++.+.
T Consensus       128 DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~  160 (571)
T 1y0p_A          128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV  160 (571)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            469999999999999999999999999998643

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.06  E-value=2.4e-05  Score=58.15  Aligned_cols=65  Identities=20%  Similarity=0.290  Sum_probs=49.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC---------------CC---chHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK---------------LR---CEKILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---------------~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      +|+|||||+.|+.+|..|++.|.+|+++++...               +.   ..+.+.+.+.+.+++.+++++.++ +.
T Consensus         7 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~   85 (320)
T 1trb_A            7 KLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-IN   85 (320)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-EE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-ee
Confidence            459999999999999999999999999996310               10   123556666666777899999876 77


Q ss_pred             EEec
Q psy5231          79 KIIG   82 (148)
Q Consensus        79 ~i~~   82 (148)
                      .+..
T Consensus        86 ~i~~   89 (320)
T 1trb_A           86 KVDL   89 (320)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.06  E-value=1e-05  Score=64.20  Aligned_cols=61  Identities=16%  Similarity=0.076  Sum_probs=48.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCCc------------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLRC------------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~------------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      +|+|||||++|+.+|..|++.+  .+|+++++.+.+.+            ...+...+.+.+++.|++++.++.+
T Consensus         8 ~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   82 (460)
T 1cjc_A            8 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEV   82 (460)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCB
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEE
Confidence            4599999999999999999998  99999998765421            1234555666677889999988765

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.05  E-value=1.6e-05  Score=64.43  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=30.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|.+|+.+|..|++.|.+|+|+++.+.
T Consensus       123 DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~  155 (566)
T 1qo8_A          123 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPF  155 (566)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            569999999999999999999999999998653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.02  E-value=1.8e-05  Score=62.15  Aligned_cols=32  Identities=28%  Similarity=0.321  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC--eEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK--KVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~   48 (148)
                      +|+|||||++|+.+|..|++.|.  +|+++++.+
T Consensus         8 dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~   41 (447)
T 2gv8_A            8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   41 (447)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             EEEEECccHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence            45999999999999999999999  999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.02  E-value=5.3e-06  Score=64.31  Aligned_cols=68  Identities=16%  Similarity=0.121  Sum_probs=50.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch-HHHH-------------HHHHhHHhcCCcEEEcCceEEEEec
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE-KILI-------------DRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-~~~~-------------~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      +|+|||||+.|+.+|..|...+.+|+|+++.+.+... +.+.             .+..+.+++.++++++++++.++..
T Consensus        11 ~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id~   90 (385)
T 3klj_A           11 KILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSIDP   90 (385)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEET
T ss_pred             CEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEEC
Confidence            3499999999999999998889999999987664321 1111             1123334568999999999999876


Q ss_pred             CC
Q psy5231          83 NN   84 (148)
Q Consensus        83 ~~   84 (148)
                      +.
T Consensus        91 ~~   92 (385)
T 3klj_A           91 NN   92 (385)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.01  E-value=1.3e-05  Score=66.31  Aligned_cols=63  Identities=17%  Similarity=0.241  Sum_probs=48.6

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch-------------HHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE-------------KILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      ++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.+.             ....+.+.+.+++.|+++++++.+.
T Consensus       374 ~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  449 (671)
T 1ps9_A          374 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT  449 (671)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEec
Confidence            45699999999999999999999999999997655321             1233445556667899999888654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.01  E-value=2.4e-05  Score=58.03  Aligned_cols=59  Identities=17%  Similarity=0.127  Sum_probs=45.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC----C-------------Cc------hHHHHHHHHhHHhcCCcEEEc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK----L-------------RC------EKILIDRLMQKVNEGKIDIKL   73 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~----~-------------~~------~~~~~~~l~~~l~~~~v~i~~   73 (148)
                      +|+|||||+.|+.+|..|++.|.+|+++++...    +             .+      .+++.+++.+.+++.++.+..
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~   85 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT   85 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence            469999999999999999999999999997431    0             00      134566666677778888876


Q ss_pred             Cc
Q psy5231          74 KH   75 (148)
Q Consensus        74 ~~   75 (148)
                      .+
T Consensus        86 ~~   87 (314)
T 4a5l_A           86 ET   87 (314)
T ss_dssp             CC
T ss_pred             eE
Confidence            54

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.00  E-value=1.5e-05  Score=61.20  Aligned_cols=32  Identities=16%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+.+|..|++.|.+|+|+|+.+
T Consensus         4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45999999999999999999999999999865

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.00  E-value=2.3e-05  Score=63.35  Aligned_cols=66  Identities=14%  Similarity=0.117  Sum_probs=50.9

Q ss_pred             eEEEEcCchHHHHHHHHHh-hcCCeEEEEEeCCCCCc---------------------------------------hHHH
Q psy5231          17 FTDVIGGGNTAVEEALYLS-NIAKKVTLIHRNEKLRC---------------------------------------EKIL   56 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~-~~g~~Vtlv~~~~~~~~---------------------------------------~~~~   56 (148)
                      +|+|||||.+|+.+|..|+ +.|.+|+|+++.+.+.+                                       .+++
T Consensus        10 dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~ei   89 (540)
T 3gwf_A           10 DAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEI   89 (540)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHHH
Confidence            4599999999999999999 89999999998653321                                       1244


Q ss_pred             HHHHHhHHhcCCc--EEEcCceEEEEec
Q psy5231          57 IDRLMQKVNEGKI--DIKLKHIVHKIIG   82 (148)
Q Consensus        57 ~~~l~~~l~~~~v--~i~~~~~v~~i~~   82 (148)
                      .+.+.+..++.++  .++++++|.++..
T Consensus        90 ~~~l~~~~~~~g~~~~i~~~~~V~~i~~  117 (540)
T 3gwf_A           90 LEYLEDVVDRFDLRRHFKFGTEVTSALY  117 (540)
T ss_dssp             HHHHHHHHHHTTCGGGEEESCCEEEEEE
T ss_pred             HHHHHHHHHHcCCcceeEeccEEEEEEE
Confidence            5556655667787  7888999988764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.99  E-value=3e-05  Score=62.34  Aligned_cols=66  Identities=15%  Similarity=0.195  Sum_probs=51.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC--C---------CC-----chHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE--K---------LR-----CEKILIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~--~---------~~-----~~~~~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      +|+|||||+.|+.+|..|++.|.+|+++++..  .         +.     ..+.+.+.+.+.+++.|++++.++++.++
T Consensus       214 dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i  293 (521)
T 1hyu_A          214 DVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKL  293 (521)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence            46999999999999999999999999997531  0         00     12355666777777889999999899888


Q ss_pred             ec
Q psy5231          81 IG   82 (148)
Q Consensus        81 ~~   82 (148)
                      ..
T Consensus       294 ~~  295 (521)
T 1hyu_A          294 VP  295 (521)
T ss_dssp             EC
T ss_pred             Ee
Confidence            53

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.98  E-value=2.3e-05  Score=63.55  Aligned_cols=66  Identities=12%  Similarity=0.120  Sum_probs=51.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---------------------------------------chHHHH
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---------------------------------------CEKILI   57 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------------------------------------~~~~~~   57 (148)
                      +|+|||||.+|+.+|..|++.|.+|+|+++.+.+.                                       ..+++.
T Consensus        23 dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei~  102 (549)
T 4ap3_A           23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEIL  102 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHHH
T ss_pred             CEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHHH
Confidence            46999999999999999999999999999854321                                       113455


Q ss_pred             HHHHhHHhcCCc--EEEcCceEEEEec
Q psy5231          58 DRLMQKVNEGKI--DIKLKHIVHKIIG   82 (148)
Q Consensus        58 ~~l~~~l~~~~v--~i~~~~~v~~i~~   82 (148)
                      +.+.+..++.++  .++++++|.++..
T Consensus       103 ~yl~~~~~~~g~~~~i~~~~~V~~i~~  129 (549)
T 4ap3_A          103 AYLEHVADRFDLRRDIRFDTRVTSAVL  129 (549)
T ss_dssp             HHHHHHHHHTTCGGGEECSCCEEEEEE
T ss_pred             HHHHHHHHHcCCCccEEECCEEEEEEE
Confidence            556655667787  7888999988863

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.97  E-value=1.3e-05  Score=63.34  Aligned_cols=68  Identities=16%  Similarity=0.179  Sum_probs=42.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCc---------------hHHH------HHHHHhHHh-cCCcEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRC---------------EKIL------IDRLMQKVN-EGKIDIK   72 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~---------------~~~~------~~~l~~~l~-~~~v~i~   72 (148)
                      +|+|||||+.|+.+|..|++.  +.+|+|+++.+.+..               ...+      ..+..+.+. ..+++++
T Consensus         5 ~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~   84 (472)
T 3iwa_A            5 HVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVEAL   84 (472)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CEEE
T ss_pred             cEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcEEE
Confidence            459999999999999999998  899999999765311               0111      111112222 4789999


Q ss_pred             cCceEEEEecCC
Q psy5231          73 LKHIVHKIIGNN   84 (148)
Q Consensus        73 ~~~~v~~i~~~~   84 (148)
                      +++++.++..+.
T Consensus        85 ~~~~V~~id~~~   96 (472)
T 3iwa_A           85 VETRAHAIDRAA   96 (472)
T ss_dssp             CSEEEEEEETTT
T ss_pred             ECCEEEEEECCC
Confidence            999998887543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.96  E-value=9.6e-06  Score=65.89  Aligned_cols=69  Identities=19%  Similarity=0.245  Sum_probs=50.1

Q ss_pred             ceEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCch---------------HH-HHHHHHhHHhcCCcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRCE---------------KI-LIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~---------------~~-~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      ++|+|||||+.|+.+|..|++.  +.+|+++++.+.+...               .. +...+....++.++++++++.+
T Consensus        37 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~~V  116 (588)
T 3ics_A           37 RKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLSEV  116 (588)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            3459999999999999999998  8999999997764210               00 1112222333689999999999


Q ss_pred             EEEecCC
Q psy5231          78 HKIIGNN   84 (148)
Q Consensus        78 ~~i~~~~   84 (148)
                      .++..+.
T Consensus       117 ~~id~~~  123 (588)
T 3ics_A          117 VKINKEE  123 (588)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            9887543

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.96  E-value=2.2e-05  Score=61.66  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-----CeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-----KKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-----~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+.+|..|++.|     .+|+++++.+.
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~   69 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGD   69 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSS
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCC
Confidence            4599999999999999999999     89999998763

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.94  E-value=3.4e-05  Score=58.02  Aligned_cols=65  Identities=18%  Similarity=0.222  Sum_probs=49.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC---------------CC---chHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK---------------LR---CEKILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---------------~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      +|+|||||+.|+.+|..|++.|.+|+++++...               +.   ..+.+.+.+.+.+++.+++++.++ +.
T Consensus        16 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~   94 (335)
T 2a87_A           16 DVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-VE   94 (335)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-EE
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-EE
Confidence            459999999999999999999999999996310               10   123556666666777899999876 76


Q ss_pred             EEec
Q psy5231          79 KIIG   82 (148)
Q Consensus        79 ~i~~   82 (148)
                      ++..
T Consensus        95 ~i~~   98 (335)
T 2a87_A           95 SVSL   98 (335)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.92  E-value=5.1e-05  Score=60.90  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus         7 dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~   38 (535)
T 3ihg_A            7 DVLVVGAGLGGLSTAMFLARQGVRVLVVERRP   38 (535)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45999999999999999999999999999853

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.91  E-value=3.4e-05  Score=60.00  Aligned_cols=68  Identities=19%  Similarity=0.172  Sum_probs=49.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCe--EEEEEeCCCCCch-HHHHH-------------HHHhHHhcCCcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKK--VTLIHRNEKLRCE-KILID-------------RLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~--Vtlv~~~~~~~~~-~~~~~-------------~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      +|+|||||+.|+.+|..|++.|.+  |+++++.+.+... +.+..             +..+.+++.+++++.++++..+
T Consensus         4 ~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i   83 (410)
T 3ef6_A            4 HVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTAL   83 (410)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEEE
T ss_pred             CEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEEE
Confidence            459999999999999999999987  9999987654321 11111             1122334679999999899888


Q ss_pred             ecCC
Q psy5231          81 IGNN   84 (148)
Q Consensus        81 ~~~~   84 (148)
                      ..+.
T Consensus        84 d~~~   87 (410)
T 3ef6_A           84 DVQT   87 (410)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            7543

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.91  E-value=1.4e-05  Score=62.23  Aligned_cols=68  Identities=19%  Similarity=0.209  Sum_probs=49.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCe--EEEEEeCCCCCch---------------HHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKK--VTLIHRNEKLRCE---------------KILIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~--Vtlv~~~~~~~~~---------------~~~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      +|+|||||+.|+.+|..|++.|.+  |+++++.+.+...               ..+..+..+.+++.+++++.++++..
T Consensus        11 ~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   90 (415)
T 3lxd_A           11 DVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVVS   90 (415)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCEEE
T ss_pred             cEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEEEE
Confidence            459999999999999999999987  9999986543210               01111122334468999999989988


Q ss_pred             EecCC
Q psy5231          80 IIGNN   84 (148)
Q Consensus        80 i~~~~   84 (148)
                      +..+.
T Consensus        91 id~~~   95 (415)
T 3lxd_A           91 LDPAA   95 (415)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            87653

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.90  E-value=5.7e-05  Score=57.53  Aligned_cols=66  Identities=15%  Similarity=0.250  Sum_probs=49.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCc----------------------------------------hH
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRC----------------------------------------EK   54 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~----------------------------------------~~   54 (148)
                      +|+|||||++|+.+|..|++.  |.+|+|+++.+...+                                        ..
T Consensus        67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~~  146 (326)
T 2gjc_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAA  146 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCHH
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcchH
Confidence            569999999999999999998  999999998544320                                        11


Q ss_pred             HHHHHHHhHHhc-CCcEEEcCceEEEEec
Q psy5231          55 ILIDRLMQKVNE-GKIDIKLKHIVHKIIG   82 (148)
Q Consensus        55 ~~~~~l~~~l~~-~~v~i~~~~~v~~i~~   82 (148)
                      .....+.+.+.+ .|++++.++.+.++..
T Consensus       147 ~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~  175 (326)
T 2gjc_A          147 LFISTVLSKVLQLPNVKLFNATCVEDLVT  175 (326)
T ss_dssp             HHHHHHHHHHHTSTTEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCcEEEecceeeeeee
Confidence            223445555545 5999999999988753

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.90  E-value=6.7e-05  Score=55.75  Aligned_cols=31  Identities=29%  Similarity=0.473  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..+++.|.+|+|+++.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~   38 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNN   38 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4699999999999999999999999999974

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.90  E-value=1.1e-05  Score=65.11  Aligned_cols=69  Identities=14%  Similarity=0.162  Sum_probs=49.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCch----HH------------HHHHHHhHHhcCCcEEEcCceE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRCE----KI------------LIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~----~~------------~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      ++|+|||||+.|+.+|..|++.  +.+|+++++.+.+...    +.            ....+....++.+++++++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            4569999999999999999998  8899999997654211    10            0011111112478999999999


Q ss_pred             EEEecCC
Q psy5231          78 HKIIGNN   84 (148)
Q Consensus        78 ~~i~~~~   84 (148)
                      .++..+.
T Consensus        82 ~~id~~~   88 (565)
T 3ntd_A           82 VAIDRAA   88 (565)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            9887543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.89  E-value=3.1e-05  Score=66.98  Aligned_cols=61  Identities=11%  Similarity=0.226  Sum_probs=48.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      +|+|||||+.|+.+|..|++.|+ +|+|+++.+.+.+           .....+...+.+++.||++++++.+
T Consensus       189 ~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v  261 (1025)
T 1gte_A          189 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSL  261 (1025)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCB
T ss_pred             EEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEe
Confidence            45999999999999999999999 7999999765432           2334455556677899999988766

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.89  E-value=6.8e-05  Score=55.74  Aligned_cols=63  Identities=17%  Similarity=0.200  Sum_probs=43.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC------------CCc-----hHHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK------------LRC-----EKILIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~------------~~~-----~~~~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++...            ++.     .+++..+....+.+.+..+........
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            459999999999999999999999999997421            010     134445554455566666665554443

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.89  E-value=1.3e-05  Score=61.32  Aligned_cols=33  Identities=30%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            469999999999999999999999999998654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.88  E-value=1.9e-05  Score=61.94  Aligned_cols=67  Identities=19%  Similarity=0.132  Sum_probs=47.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC--eEEEEEeCCCCCch-----H----------HHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK--KVTLIHRNEKLRCE-----K----------ILIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~~-----~----------~~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      +|+|||||+.|+.+|..|++.|.  +|+++++.+.+...     .          .+.....+.+++.|+++++++.+..
T Consensus         6 ~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~   85 (431)
T 1q1r_A            6 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTA   85 (431)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCEEE
T ss_pred             cEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEEEE
Confidence            45999999999999999999998  79999986543210     0          0000112334468999999998888


Q ss_pred             EecC
Q psy5231          80 IIGN   83 (148)
Q Consensus        80 i~~~   83 (148)
                      +..+
T Consensus        86 i~~~   89 (431)
T 1q1r_A           86 INRD   89 (431)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            7653

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.88  E-value=2.5e-05  Score=61.86  Aligned_cols=60  Identities=12%  Similarity=0.139  Sum_probs=47.1

Q ss_pred             eEEEEcCchHHHHHHHHHhh-c------CCeEEEEEeCCCCCc------------hHHHHHHHHhHHhcCCcEEEcCce
Q psy5231          17 FTDVIGGGNTAVEEALYLSN-I------AKKVTLIHRNEKLRC------------EKILIDRLMQKVNEGKIDIKLKHI   76 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~-~------g~~Vtlv~~~~~~~~------------~~~~~~~l~~~l~~~~v~i~~~~~   76 (148)
                      +|+|||||+.|+.+|..|++ .      +.+|++|++.+.+.+            ...+...+.+.+++.+++++.+..
T Consensus         5 ~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v~   83 (456)
T 1lqt_A            5 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVV   83 (456)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESCC
T ss_pred             EEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeEE
Confidence            45999999999999999999 7      999999999755421            123455666667788999998754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.86  E-value=3.7e-05  Score=62.23  Aligned_cols=66  Identities=17%  Similarity=0.191  Sum_probs=49.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---------------------------------------chHHHH
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---------------------------------------CEKILI   57 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------------------------------------~~~~~~   57 (148)
                      +|+|||||.+|+.+|..|++.|.+|+|+++.+.+.                                       ..+++.
T Consensus        11 dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei~   90 (545)
T 3uox_A           11 DAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEML   90 (545)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHHH
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHHH
Confidence            45999999999999999999999999999865321                                       123445


Q ss_pred             HHHHhHHhcCCc--EEEcCceEEEEec
Q psy5231          58 DRLMQKVNEGKI--DIKLKHIVHKIIG   82 (148)
Q Consensus        58 ~~l~~~l~~~~v--~i~~~~~v~~i~~   82 (148)
                      +.+.+..++.++  .+.++++|.++..
T Consensus        91 ~yl~~~~~~~~l~~~i~~~~~V~~~~~  117 (545)
T 3uox_A           91 RYVNRAADAMDVRKHYRFNTRVTAARY  117 (545)
T ss_dssp             HHHHHHHHHHTCGGGEECSCCEEEEEE
T ss_pred             HHHHHHHHHcCCcCcEEECCEEEEEEE
Confidence            555555555666  6788888888753

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.86  E-value=3e-05  Score=60.75  Aligned_cols=68  Identities=22%  Similarity=0.209  Sum_probs=47.4

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCCchHH-------------HHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLRCEKI-------------LIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~~~-------------~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      |+|+|||||+.|+.+|..|++.+  .+||||++++.+...+.             +...+.+.+++.||+++.+ ++.+|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence            45699999999999999999875  78999998765321111             1111233445679999865 68888


Q ss_pred             ecCC
Q psy5231          81 IGNN   84 (148)
Q Consensus        81 ~~~~   84 (148)
                      ..+.
T Consensus        82 d~~~   85 (430)
T 3hyw_A           82 DPDA   85 (430)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            7554

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.86  E-value=7.3e-05  Score=57.32  Aligned_cols=65  Identities=15%  Similarity=0.275  Sum_probs=49.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCc----------------------------------------hH
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRC----------------------------------------EK   54 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~----------------------------------------~~   54 (148)
                      +|+|||||++|+.+|..|++.  |.+|+|+++.+.+.+                                        ..
T Consensus        81 DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~~  160 (344)
T 3jsk_A           81 DIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHAA  160 (344)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecHH
Confidence            349999999999999999997  999999998643320                                        11


Q ss_pred             HHHHHHHhHHhc-CCcEEEcCceEEEEe
Q psy5231          55 ILIDRLMQKVNE-GKIDIKLKHIVHKII   81 (148)
Q Consensus        55 ~~~~~l~~~l~~-~~v~i~~~~~v~~i~   81 (148)
                      +..+.|.+.+++ .|++++.++.+.++.
T Consensus       161 d~~~~L~~~a~~~~gV~i~~~~~V~dLi  188 (344)
T 3jsk_A          161 LFTSTVLSKVLQRPNVKLFNATTVEDLI  188 (344)
T ss_dssp             HHHHHHHHHHHTCTTEEEEETEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCEEEeCCEEEEEE
Confidence            233445555555 699999999988775

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.85  E-value=1.2e-05  Score=61.93  Aligned_cols=69  Identities=22%  Similarity=0.176  Sum_probs=48.1

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch--------------HHHHHHHHhHHhcCCcEEEcCc
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE--------------KILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------------~~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      .|.++    +|||||+.|+.+|..|++.| +|+|+++.+.+...              +.+.....+.+++.|++++.++
T Consensus         7 ~~~~v----vIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~   81 (367)
T 1xhc_A            7 HGSKV----VIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAE   81 (367)
T ss_dssp             --CEE----EEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSC
T ss_pred             CCCcE----EEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECC
Confidence            45666    99999999999999999999 99999986542110              0111112233446799999988


Q ss_pred             eEEEEecC
Q psy5231          76 IVHKIIGN   83 (148)
Q Consensus        76 ~v~~i~~~   83 (148)
                      .+..+..+
T Consensus        82 ~v~~id~~   89 (367)
T 1xhc_A           82 EAKLIDRG   89 (367)
T ss_dssp             CEEEEETT
T ss_pred             EEEEEECC
Confidence            88877654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.84  E-value=1.3e-05  Score=62.24  Aligned_cols=68  Identities=16%  Similarity=0.194  Sum_probs=48.2

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCC--eEEEEEeCCCCCch---------------HHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAK--KVTLIHRNEKLRCE---------------KILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~~---------------~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      ++|+|||||+.|+.+|..|++.|.  +|+++++.+.+...               ..+..+..+.+++.+++++. +++.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence            345999999999999999999998  89999986543210               00111122333468999998 8888


Q ss_pred             EEecCC
Q psy5231          79 KIIGNN   84 (148)
Q Consensus        79 ~i~~~~   84 (148)
                      ++..+.
T Consensus        81 ~id~~~   86 (404)
T 3fg2_P           81 SIDREG   86 (404)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            887553

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.83  E-value=2.1e-05  Score=61.83  Aligned_cols=67  Identities=10%  Similarity=0.081  Sum_probs=48.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCch---------------HHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRCE---------------KILIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~---------------~~~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      +|+|||||+.|+.+|..|++.  |.+|+|+++.+.+...               ..+.....+.+++.|++++.++.+..
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~   81 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEEE
Confidence            569999999999999999998  9999999987653210               01111123344567999988988887


Q ss_pred             EecC
Q psy5231          80 IIGN   83 (148)
Q Consensus        80 i~~~   83 (148)
                      +..+
T Consensus        82 i~~~   85 (447)
T 1nhp_A           82 IQPK   85 (447)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            7543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.83  E-value=6.4e-05  Score=59.40  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=31.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      +|+|||||+.|+.+|..|++.|.+|+||++.+.+.
T Consensus         6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~G   40 (466)
T 3l8k_A            6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELG   40 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence            46999999999999999999999999999766653

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.82  E-value=2.1e-05  Score=61.05  Aligned_cols=34  Identities=12%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            5699999999999999999999999999987654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.81  E-value=2e-05  Score=63.86  Aligned_cols=41  Identities=22%  Similarity=0.367  Sum_probs=35.7

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      .....+|+|    +|||+|.+|+|+|..|++.+.+||+++|.+.+
T Consensus       186 ~~~~~~krV----~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          186 GVDFTGKRV----GVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             CCCCBTCEE----EEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             ccccCCCEE----EEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            334567777    99999999999999999999999999998764

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.81  E-value=1.9e-05  Score=62.45  Aligned_cols=36  Identities=28%  Similarity=0.269  Sum_probs=31.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-CCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~   52 (148)
                      +|+|||||.+|+-+|..|++. |.+|+|+|+++++.+
T Consensus        12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A           12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG   48 (513)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCG
T ss_pred             CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcC
Confidence            469999999999999999974 999999999877644

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.80  E-value=4e-05  Score=59.06  Aligned_cols=69  Identities=22%  Similarity=0.224  Sum_probs=45.7

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCCc---hHHH---------HHHHHhHHhcCCcEEEcCce
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLRC---EKIL---------IDRLMQKVNEGKIDIKLKHI   76 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~---~~~~---------~~~l~~~l~~~~v~i~~~~~   76 (148)
                      ||+|    +|||||+.|+.+|..|++.+  .+||||++.+.+..   ....         ..+-.+.+.+.|++++. .+
T Consensus         2 GKkV----vIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~-~~   76 (401)
T 3vrd_B            2 GRKV----VVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVH-DS   76 (401)
T ss_dssp             CCEE----EEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEEC-SC
T ss_pred             cCEE----EEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEE-eE
Confidence            5566    99999999999999998875  58999998764211   0000         00001223357999985 46


Q ss_pred             EEEEecCC
Q psy5231          77 VHKIIGNN   84 (148)
Q Consensus        77 v~~i~~~~   84 (148)
                      +.+|..+.
T Consensus        77 v~~id~~~   84 (401)
T 3vrd_B           77 ALGIDPDK   84 (401)
T ss_dssp             EEEEETTT
T ss_pred             EEEEEccC
Confidence            77887654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=97.76  E-value=2.6e-05  Score=60.35  Aligned_cols=34  Identities=29%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT   35 (425)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence            5699999999999999999999999999997654

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.75  E-value=0.00013  Score=59.37  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+.+|..|++.|.+|+++++.+
T Consensus       128 ~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~  159 (572)
T 1d4d_A          128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP  159 (572)
T ss_dssp             SEEEECCSHHHHHHHHHHHSSSCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            45999999999999999999999999999854

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=97.73  E-value=2.8e-05  Score=60.35  Aligned_cols=34  Identities=38%  Similarity=0.514  Sum_probs=30.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+++.+
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            5699999999999999999999999999986543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.72  E-value=3.5e-05  Score=60.59  Aligned_cols=66  Identities=12%  Similarity=0.052  Sum_probs=48.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCch----------------H-HHHHHHHhHHhcCCcEEEcCceE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRCE----------------K-ILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~----------------~-~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      +|+|||||+.|+.+|..|++.  |.+|+|+++.+.+...                + .+...+.+.+++.|++++.++.+
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   81 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV   81 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence            469999999999999999998  9999999997643110                0 01111223445689999888888


Q ss_pred             EEEec
Q psy5231          78 HKIIG   82 (148)
Q Consensus        78 ~~i~~   82 (148)
                      ..+..
T Consensus        82 ~~i~~   86 (452)
T 2cdu_A           82 TNVDP   86 (452)
T ss_dssp             EEEEG
T ss_pred             EEEEc
Confidence            88764

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.71  E-value=7.9e-05  Score=57.95  Aligned_cols=66  Identities=12%  Similarity=0.094  Sum_probs=47.5

Q ss_pred             EEEEcCchHHHHHHHHHhhcCC--eEEEEEeCCCCCch-----HHHHHH-HHh-----HHhcCCcEEEcCceEEEEecC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAK--KVTLIHRNEKLRCE-----KILIDR-LMQ-----KVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~~-----~~~~~~-l~~-----~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      |+|||||+.|+.+|..|++.|.  +|+++++.+.+...     ...... ..+     .+++.+++++.++++..+..+
T Consensus        10 vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~   88 (408)
T 2gqw_A           10 VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQ   88 (408)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEETT
T ss_pred             EEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEECC
Confidence            4999999999999999999987  49999987654321     111110 000     345679999999888888653

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=97.70  E-value=3.8e-05  Score=57.92  Aligned_cols=32  Identities=25%  Similarity=0.174  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus         6 dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            6 DCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            45999999999999999999999999999975

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.70  E-value=3.5e-05  Score=60.56  Aligned_cols=34  Identities=32%  Similarity=0.482  Sum_probs=30.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC--eEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK--KVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~   50 (148)
                      +|+|||||.+|+-+|..|++.|.  +|+|+|+++++
T Consensus         4 dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            4 TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             EEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            45999999999999999999999  99999986544

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.70  E-value=3.5e-05  Score=60.31  Aligned_cols=33  Identities=18%  Similarity=0.339  Sum_probs=30.2

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|+|||||++|+.+|..|++.|.+|+|+++.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            345999999999999999999999999999864

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.70  E-value=3.3e-05  Score=61.25  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      ++|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus        34 ~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~   68 (498)
T 2iid_A           34 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   68 (498)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence            45599999999999999999999999999987665

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.70  E-value=4.2e-05  Score=61.03  Aligned_cols=64  Identities=23%  Similarity=0.344  Sum_probs=47.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---------------hHHHHHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---------------EKILIDRLMQKVNEGKIDIKLKHIVHKII   81 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------~~~~~~~l~~~l~~~~v~i~~~~~v~~i~   81 (148)
                      +|+|||||+.|+.+|..|++. .+|+|+++.+.+.+               ..++...+.+.+ ..++++++++.+.++.
T Consensus       110 dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i~  187 (493)
T 1y56_A          110 DVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGVF  187 (493)
T ss_dssp             SCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCCE
T ss_pred             CEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEEE
Confidence            459999999999999999999 99999998765421               123344555545 5699999888876654


Q ss_pred             c
Q psy5231          82 G   82 (148)
Q Consensus        82 ~   82 (148)
                      .
T Consensus       188 ~  188 (493)
T 1y56_A          188 D  188 (493)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.70  E-value=4.5e-05  Score=58.93  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=30.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus        25 dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            459999999999999999999999999999654

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.69  E-value=0.00015  Score=62.48  Aligned_cols=66  Identities=15%  Similarity=0.161  Sum_probs=50.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--------------hHHHHHHHHhHHhc-CCcEEEcCceEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--------------EKILIDRLMQKVNE-GKIDIKLKHIVHKII   81 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------------~~~~~~~l~~~l~~-~~v~i~~~~~v~~i~   81 (148)
                      +|+|||+|+.|+.+|..|++.|.+|+||++.+.+.+              ..++...+.+.+.+ .+++++.++.+.++.
T Consensus       130 dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i~  209 (965)
T 2gag_A          130 DVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFGSY  209 (965)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEeee
Confidence            469999999999999999999999999998654421              12334444445555 499999998888765


Q ss_pred             c
Q psy5231          82 G   82 (148)
Q Consensus        82 ~   82 (148)
                      .
T Consensus       210 ~  210 (965)
T 2gag_A          210 D  210 (965)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.66  E-value=4e-05  Score=61.27  Aligned_cols=36  Identities=14%  Similarity=0.235  Sum_probs=32.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~   52 (148)
                      +|+|||||.+|+-+|..|++.| .+|+|+|+++++.+
T Consensus        10 ~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGG   46 (516)
T 1rsg_A           10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG   46 (516)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBT
T ss_pred             cEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence            4599999999999999999999 99999999877644

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.66  E-value=5.8e-05  Score=58.23  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=30.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+.+|..|++.|.+|+|+|+.+.
T Consensus        28 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   60 (398)
T 2xdo_A           28 NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND   60 (398)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            459999999999999999999999999998653

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.66  E-value=4.6e-05  Score=59.06  Aligned_cols=34  Identities=21%  Similarity=0.522  Sum_probs=30.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~   50 (148)
                      +|+|||||.+|+-+|..|++.| .+|+|+|+.+++
T Consensus         8 ~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            8 RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            3499999999999999999999 899999987654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.65  E-value=4.9e-05  Score=58.41  Aligned_cols=32  Identities=22%  Similarity=0.400  Sum_probs=29.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus         6 DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            6 DVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            45999999999999999999999999999854

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.65  E-value=2.9e-05  Score=60.70  Aligned_cols=34  Identities=26%  Similarity=0.526  Sum_probs=31.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC------CeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA------KKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g------~~Vtlv~~~~~~   50 (148)
                      +|+|||||.+|+-+|..|++.|      .+|+|+|+.+++
T Consensus         7 dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            7 HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            4599999999999999999999      999999997654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.65  E-value=4e-05  Score=62.03  Aligned_cols=39  Identities=28%  Similarity=0.292  Sum_probs=34.6

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ....+|+|    +|||+|.+|+|+|..|++.+.+||+++|.+.
T Consensus       181 ~~~~~krV----~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          181 VDFTGKRV----GVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             CCCBTCEE----EEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             cccCCCeE----EEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            34456777    9999999999999999999999999999876

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.65  E-value=0.0002  Score=57.43  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=30.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+.+|..|++.|.+|+||++.+.+
T Consensus        45 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   78 (523)
T 1mo9_A           45 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   78 (523)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4599999999999999999999999999997643

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.64  E-value=0.00012  Score=57.52  Aligned_cols=68  Identities=13%  Similarity=0.146  Sum_probs=47.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCCch----HHHH------------HHHHhHHhcCCcEEEcCceEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLRCE----KILI------------DRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~----~~~~------------~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      +|+|||||+.|+.+|..|++.|  .+|+||++.+.+...    +...            ....+.+++.+++++.++++.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            4699999999999999999987  469999986543211    1000            001112235789999999998


Q ss_pred             EEecCC
Q psy5231          79 KIIGNN   84 (148)
Q Consensus        79 ~i~~~~   84 (148)
                      ++..+.
T Consensus        82 ~id~~~   87 (437)
T 4eqs_A           82 AINDER   87 (437)
T ss_dssp             EEETTT
T ss_pred             EEEccC
Confidence            887554

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.63  E-value=5.2e-05  Score=59.80  Aligned_cols=36  Identities=28%  Similarity=0.153  Sum_probs=32.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +|+|||+|..|+-+|..|++.|++|+++|+.+.+.+
T Consensus        13 dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   48 (453)
T 2bcg_G           13 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   48 (453)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence            349999999999999999999999999999887754

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.62  E-value=5.2e-05  Score=57.25  Aligned_cols=33  Identities=15%  Similarity=0.116  Sum_probs=30.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhh---cCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSN---IAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~---~g~~Vtlv~~~~   48 (148)
                      ++|+|||||.+|+-+|..|++   .|.+|+|+|+.+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            356999999999999999999   899999999864

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.62  E-value=5.3e-05  Score=58.19  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=30.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+.+|..|++.  |.+|+|+|+.+.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            569999999999999999999  9999999986543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.62  E-value=5.6e-05  Score=58.29  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=30.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+.+|..|++.|.+|+|+|+.+.
T Consensus         7 ~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            7 RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            459999999999999999999999999998654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.60  E-value=7.1e-05  Score=59.15  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=32.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+.+++.+
T Consensus        13 ~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A           13 SVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG   48 (489)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            449999999999999999999999999999776543

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.59  E-value=0.00023  Score=57.38  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+.+|..|++.|.+|+++++.+.
T Consensus        18 dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~   50 (542)
T 1w4x_A           18 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   50 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            469999999999999999999999999998643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=97.59  E-value=5.6e-05  Score=57.58  Aligned_cols=32  Identities=31%  Similarity=0.393  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+.+|..|++.|.+|+|+++.+
T Consensus        19 dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           19 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            56999999999999999999999999999853

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=97.59  E-value=5.6e-05  Score=58.37  Aligned_cols=32  Identities=22%  Similarity=0.290  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+++.+
T Consensus         7 dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            7 DVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            45999999999999999999999999999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.58  E-value=8e-05  Score=59.10  Aligned_cols=67  Identities=22%  Similarity=0.292  Sum_probs=47.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCc----hHH-----------HHHHHHhHH-hcCCcEEEcCceEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRC----EKI-----------LIDRLMQKV-NEGKIDIKLKHIVH   78 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~----~~~-----------~~~~l~~~l-~~~~v~i~~~~~v~   78 (148)
                      +|+|||||+.|+.+|..|++.  |.+|+|+++.+.+..    .+.           +..+..+.+ +..|++++.++.+.
T Consensus        38 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v~  117 (480)
T 3cgb_A           38 NYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVT  117 (480)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEEE
Confidence            569999999999999999986  899999998765321    111           111112233 24599999988888


Q ss_pred             EEecC
Q psy5231          79 KIIGN   83 (148)
Q Consensus        79 ~i~~~   83 (148)
                      .+..+
T Consensus       118 ~i~~~  122 (480)
T 3cgb_A          118 KVDTE  122 (480)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            87643

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.58  E-value=8.1e-05  Score=57.62  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=30.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCe-EEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKK-VTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~   50 (148)
                      +|+|||||++|+.+|..|++.|.+ |+|+++.+.+
T Consensus         6 dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            6 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   40 (410)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence            359999999999999999999999 9999986543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.57  E-value=0.00021  Score=56.94  Aligned_cols=32  Identities=28%  Similarity=0.354  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus         4 dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            4 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            45999999999999999999999999999863

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.56  E-value=4.7e-05  Score=57.81  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+.+|..|++.|.+|+|+++.+
T Consensus         4 dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            4 DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            46999999999999999999999999999854

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.56  E-value=6.4e-05  Score=60.03  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=31.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+++++
T Consensus         6 ~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            6 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3499999999999999999999999999987655

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.56  E-value=6.3e-05  Score=57.05  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=29.7

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      ++|+|||||.+|+-+|..|+ .|.+|+|+++.+.+
T Consensus        10 ~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~   43 (381)
T 3nyc_A           10 ADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP   43 (381)
T ss_dssp             CSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred             CCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence            34599999999999999999 59999999987543

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=97.56  E-value=6.8e-05  Score=57.20  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+.+|..|++.|.+|+|+++.+
T Consensus         5 dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            46999999999999999999999999999854

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.55  E-value=9.1e-05  Score=56.26  Aligned_cols=31  Identities=26%  Similarity=0.387  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus         8 dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            8 RVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            4599999999999999999999999999974

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.55  E-value=8.3e-05  Score=58.08  Aligned_cols=34  Identities=18%  Similarity=0.357  Sum_probs=31.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus         7 ~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            4599999999999999999999999999987655

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.55  E-value=0.00034  Score=55.00  Aligned_cols=31  Identities=26%  Similarity=0.405  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.
T Consensus         5 dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            4599999999999999999999999999986

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.54  E-value=7.3e-05  Score=58.79  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=31.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus        18 ~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           18 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   51 (478)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            3499999999999999999999999999997765

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.54  E-value=8.4e-05  Score=59.04  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=31.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      +|+|||||+.|+.+|..|++.|.+|+||++.+.+.
T Consensus        27 dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~G   61 (491)
T 3urh_A           27 DLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYG   61 (491)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            34999999999999999999999999999876654

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.54  E-value=9.3e-05  Score=58.03  Aligned_cols=33  Identities=24%  Similarity=0.273  Sum_probs=30.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|+|||||..|+++|..+++.|.+|+|+++++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            356999999999999999999999999999753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.52  E-value=0.00039  Score=54.92  Aligned_cols=31  Identities=29%  Similarity=0.345  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..|++.|.+|+||++.
T Consensus         6 dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (463)
T 2r9z_A            6 DLIAIGGGSGGLAVAEKAAAFGKRVALIESK   36 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEcCC
Confidence            4599999999999999999999999999986

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.52  E-value=9.3e-05  Score=61.82  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=31.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      ++|+|||||+.|+.+|..|++.|.+|+|+++.+.+
T Consensus       390 ~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~  424 (729)
T 1o94_A          390 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI  424 (729)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            45699999999999999999999999999997655

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.52  E-value=7.6e-05  Score=56.89  Aligned_cols=31  Identities=35%  Similarity=0.403  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||.+|+.+|..|++.|.+|+|+++.
T Consensus         7 dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~   37 (382)
T 1y56_B            7 EIVVIGGGIVGVTIAHELAKRGEEVTVIEKR   37 (382)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4599999999999999999999999999986

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.51  E-value=0.00011  Score=58.29  Aligned_cols=35  Identities=26%  Similarity=0.263  Sum_probs=31.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+.+.+.
T Consensus        15 ~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   49 (504)
T 1sez_A           15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   49 (504)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            34999999999999999999999999999977653

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.51  E-value=0.00013  Score=56.39  Aligned_cols=36  Identities=14%  Similarity=0.230  Sum_probs=32.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +++|||+|.+|+.+|..|++.|.+|+++|+.+.+.+
T Consensus         5 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG   40 (384)
T 2bi7_A            5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   40 (384)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCC
Confidence            459999999999999999999999999999876643

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.49  E-value=0.00011  Score=56.89  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC-CCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN-EKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~   50 (148)
                      +|+|||+|.+|+-+|..|.+.|.+|+|+|+. +++
T Consensus        46 ~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           46 RILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            5599999999999999999999999999987 543

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=97.47  E-value=0.00014  Score=56.61  Aligned_cols=33  Identities=21%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~   49 (148)
                      +|+|||||.+|+-+|..|++.|. +|+|+++.+.
T Consensus         8 dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            8 SLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            45999999999999999999999 9999998653

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.44  E-value=0.00011  Score=56.93  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=32.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-CCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~   52 (148)
                      +|+|||||.+|+-+|..|++. |.+|+|+|+++.+.+
T Consensus         9 ~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG   45 (399)
T 1v0j_A            9 DLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGG   45 (399)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSG
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            349999999999999999999 999999999877654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.43  E-value=0.00011  Score=55.57  Aligned_cols=32  Identities=19%  Similarity=0.183  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC------CeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA------KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g------~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|      .+|+|+++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            5699999999999999999998      8999999853

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.43  E-value=0.00062  Score=54.16  Aligned_cols=29  Identities=28%  Similarity=0.355  Sum_probs=27.7

Q ss_pred             eEEEEcCchHHHHHHHHHhh-cCCeEEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSN-IAKKVTLIH   45 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~   45 (148)
                      +|+|||||+.|+.+|..|++ .|.+|+||+
T Consensus         5 dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            5 DLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            46999999999999999999 999999999

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=97.43  E-value=0.00011  Score=56.35  Aligned_cols=32  Identities=19%  Similarity=0.428  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhh-cC-CeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN-IA-KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~-~g-~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+.+|..|++ .| .+|+|+++.+
T Consensus        23 dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           23 DAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            46999999999999999999 99 9999999864

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.43  E-value=0.00012  Score=57.82  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=31.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      +|+|||+|.+|+-+|..|++.|.+|+|+|+.+++.
T Consensus        41 ~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   75 (495)
T 2vvm_A           41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIG   75 (495)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSB
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            56999999999999999999999999999977653

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.42  E-value=0.00016  Score=57.82  Aligned_cols=32  Identities=19%  Similarity=0.080  Sum_probs=29.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus        14 dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~   45 (499)
T 2qa2_A           14 SVIVVGAGPAGLMLAGELRLGGVDVMVLEQLP   45 (499)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            46999999999999999999999999999854

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.42  E-value=0.00015  Score=55.62  Aligned_cols=36  Identities=22%  Similarity=0.217  Sum_probs=32.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +++|||||.+|+-+|..|++.|.+|+++|+.+.+.+
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG   38 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence            459999999999999999999999999999776644

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.42  E-value=0.00016  Score=59.71  Aligned_cols=32  Identities=31%  Similarity=0.324  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus       274 DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  305 (676)
T 3ps9_A          274 EAAIIGGGIASALLSLALLRRGWQVTLYCADE  305 (676)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            56999999999999999999999999999854

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.41  E-value=0.00015  Score=57.93  Aligned_cols=32  Identities=22%  Similarity=0.154  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus        13 dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~   44 (500)
T 2qa1_A           13 AVIVVGAGPAGMMLAGELRLAGVEVVVLERLV   44 (500)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            34999999999999999999999999999854

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.41  E-value=0.00011  Score=57.86  Aligned_cols=32  Identities=28%  Similarity=0.328  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+.+|..|++.|.+|+|+++.+
T Consensus         8 dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~   39 (453)
T 3atr_A            8 DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP   39 (453)
T ss_dssp             SEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            35999999999999999999999999999864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.41  E-value=0.00016  Score=56.44  Aligned_cols=36  Identities=17%  Similarity=0.204  Sum_probs=32.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +++|||||.+|+-+|..|++.|.+|+|+++++.+.+
T Consensus        31 dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG   66 (397)
T 3hdq_A           31 DYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG   66 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCC
Confidence            469999999999999999999999999998776543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.41  E-value=0.00016  Score=56.98  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=31.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+.+
T Consensus         4 dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~   37 (468)
T 2qae_A            4 DVVVIGGGPGGYVASIKAAQLGMKTACVEKRGAL   37 (468)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            4599999999999999999999999999997655

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.40  E-value=0.00014  Score=57.14  Aligned_cols=34  Identities=29%  Similarity=0.477  Sum_probs=30.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~   50 (148)
                      +|+|||||.+|+-+|..|++.|  .+|+|+|+.+.+
T Consensus         6 ~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            6 RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             EEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            4599999999999999999999  999999986654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.38  E-value=0.00013  Score=58.03  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=29.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhh---cCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSN---IAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~---~g~~Vtlv~~~~   48 (148)
                      .+|+|||||.+|+-+|..|++   .|.+|+|+|+.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            356999999999999999999   999999999853

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.38  E-value=0.00018  Score=57.12  Aligned_cols=31  Identities=26%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.
T Consensus        28 DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           28 DLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            4599999999999999999999999999983

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.38  E-value=0.00019  Score=57.66  Aligned_cols=31  Identities=29%  Similarity=0.427  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhh---cCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN---IAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~---~g~~Vtlv~~~   47 (148)
                      +|+|||||.+|+-+|..|++   .|.+|+|+++.
T Consensus         7 dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~   40 (538)
T 2aqj_A            7 NIVIVGGGTAGWMAASYLVRALQQQANITLIESA   40 (538)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCC
Confidence            45999999999999999999   99999999984

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.38  E-value=0.00017  Score=59.74  Aligned_cols=32  Identities=31%  Similarity=0.326  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus       266 DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  297 (689)
T 3pvc_A          266 DIAIIGGGIVSALTALALQRRGAVVTLYCADA  297 (689)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            55999999999999999999999999999854

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.37  E-value=0.00015  Score=57.91  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=29.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+++.+
T Consensus         9 dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            9 DLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            45999999999999999999999999999864

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.37  E-value=0.0002  Score=56.62  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=31.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+.+
T Consensus         7 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   40 (478)
T 1v59_A            7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence            4599999999999999999999999999996555

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.36  E-value=0.00017  Score=58.21  Aligned_cols=34  Identities=18%  Similarity=0.241  Sum_probs=30.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+..
T Consensus        28 dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           28 DVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4599999999999999999999999999986543

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.36  E-value=0.0002  Score=56.48  Aligned_cols=30  Identities=30%  Similarity=0.397  Sum_probs=28.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++
T Consensus         7 DVvVIGaG~aGl~aA~~la~~G~~V~liEk   36 (463)
T 4dna_A            7 DLFVIGGGSGGVRSGRLAAALGKKVAIAEE   36 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEES
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCEEEEEeC
Confidence            459999999999999999999999999998

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.35  E-value=0.00021  Score=56.41  Aligned_cols=34  Identities=29%  Similarity=0.354  Sum_probs=31.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+.+
T Consensus         8 dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (474)
T 1zmd_A            8 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL   41 (474)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4599999999999999999999999999997655

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.35  E-value=0.00016  Score=57.76  Aligned_cols=32  Identities=22%  Similarity=0.190  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+.+|..|++.|.+|+|+++.+
T Consensus         5 DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~   36 (501)
T 2qcu_A            5 DLIVIGGGINGAGIAADAAGRGLSVLMLEAQD   36 (501)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            45999999999999999999999999999853

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.34  E-value=0.00023  Score=57.45  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=30.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhh---cCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSN---IAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~---~g~~Vtlv~~~~   48 (148)
                      .+|+|||||.+|+-+|..|++   .|.+|+||++.+
T Consensus        26 ~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           26 DKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            356999999999999999999   899999999853

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.34  E-value=0.00023  Score=55.96  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+.+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~   36 (455)
T 2yqu_A            3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKAL   36 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            4699999999999999999999999999987654

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.33  E-value=0.0002  Score=58.31  Aligned_cols=32  Identities=19%  Similarity=0.097  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus        51 DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~   82 (570)
T 3fmw_A           51 DVVVVGGGPVGLMLAGELRAGGVGALVLEKLV   82 (570)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            45999999999999999999999999999854

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.33  E-value=0.00016  Score=55.94  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~   47 (148)
                      +|+|||||.+|+-+|..|++.  |.+|+|+++.
T Consensus        38 dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~   70 (405)
T 3c4n_A           38 DIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG   70 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            469999999999999999999  9999999984

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.31  E-value=0.00024  Score=56.82  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=30.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||+|..|+-+|..|++.|.+|+|+|+.+..
T Consensus        43 DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~   76 (510)
T 4at0_A           43 DVVVAGYGIAGVAASIEAARAGADVLVLERTSGW   76 (510)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4699999999999999999999999999986543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.31  E-value=0.00025  Score=55.86  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=31.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+.+|..|++.|.+|+++++.+.+
T Consensus         8 dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (470)
T 1dxl_A            8 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   41 (470)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            4599999999999999999999999999997655

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.31  E-value=0.00023  Score=57.11  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhh------------cCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN------------IAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~------------~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++            .|.+|+|+|+.+
T Consensus         9 dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            9 EIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            45999999999999999999            899999999853

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.30  E-value=0.00023  Score=58.84  Aligned_cols=31  Identities=26%  Similarity=0.467  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||.+|+++|..+++.|.+|+|+++.
T Consensus        30 DVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~   60 (651)
T 3ces_A           30 DVIIIGGGHAGTEAAMAAARMGQQTLLLTHN   60 (651)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEECChHHHHHHHHHHHhCCCCEEEEeec
Confidence            4599999999999999999999999999986

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.30  E-value=0.00024  Score=57.67  Aligned_cols=32  Identities=31%  Similarity=0.244  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus        20 DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d   51 (561)
T 3da1_A           20 DLLVIGGGITGAGIALDAQVRGIQTGLVEMND   51 (561)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            56999999999999999999999999999863

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.29  E-value=0.00023  Score=58.16  Aligned_cols=31  Identities=29%  Similarity=0.498  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus        25 DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~   55 (591)
T 3i3l_A           25 KVAIIGGGPAGSVAGLTLHKLGHDVTIYERS   55 (591)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHcCCCCEEEEcCC
Confidence            4599999999999999999999999999986

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.29  E-value=0.00023  Score=56.96  Aligned_cols=39  Identities=26%  Similarity=0.256  Sum_probs=33.6

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEK   49 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~   49 (148)
                      ..+.||+|    +|||+|.+|+|++..|++.  +.+|+++.|+..
T Consensus       242 ~~~~gKrV----~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          242 DKSKPYNI----AVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             CTTSCCEE----EEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred             cccCCcEE----EEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            34778888    9999999999999999875  789999999754

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.28  E-value=0.0002  Score=58.20  Aligned_cols=32  Identities=28%  Similarity=0.268  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus        34 DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           34 DLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            45999999999999999999999999999854

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.28  E-value=0.00028  Score=55.94  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=30.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+.+
T Consensus         8 dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~   41 (482)
T 1ojt_A            8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4599999999999999999999999999986554

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.25  E-value=0.00024  Score=56.16  Aligned_cols=32  Identities=25%  Similarity=0.283  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+.+|..|++.|.+|+||++.+
T Consensus         5 DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~   36 (476)
T 3lad_A            5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (476)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            45999999999999999999999999999875

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=97.25  E-value=0.00018  Score=56.20  Aligned_cols=30  Identities=23%  Similarity=0.315  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~   46 (148)
                      +|+|||||.+|+.+|..|++.| .+|+|+++
T Consensus        25 dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           25 DYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            4699999999999999999999 99999998

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.0003  Score=55.74  Aligned_cols=31  Identities=29%  Similarity=0.312  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..|++.|.+|+||++.
T Consensus        13 dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~   43 (479)
T 2hqm_A           13 DYLVIGGGSGGVASARRAASYGAKTLLVEAK   43 (479)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTSCCEEEEESS
T ss_pred             CEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4599999999999999999999999999986

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.25  E-value=0.00027  Score=58.25  Aligned_cols=31  Identities=32%  Similarity=0.463  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||.+|+++|..+++.|.+|+|+++.
T Consensus        29 DVIVIGgG~AGl~AAlalAr~G~kVlLIEk~   59 (637)
T 2zxi_A           29 DVVVIGGGHAGIEAALAAARMGAKTAMFVLN   59 (637)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEec
Confidence            3599999999999999999999999999986

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.24  E-value=0.00035  Score=55.59  Aligned_cols=34  Identities=26%  Similarity=0.355  Sum_probs=30.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~   50 (148)
                      +++|||||.+|+-+|..|++.| .+|+++|+.+.+
T Consensus        11 ~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A           11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            3499999999999999999998 899999997655

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.24  E-value=0.00034  Score=55.14  Aligned_cols=31  Identities=39%  Similarity=0.487  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..|++.|.+|+||++.
T Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   36 (467)
T 1zk7_A            6 QVAVIGSGGAAMAAALKAVEQGAQVTLIERG   36 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4599999999999999999999999999986

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.23  E-value=0.00031  Score=58.05  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=32.3

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      ++|+|||+|.+|+.+|..|++.|.+|+++++.+++.
T Consensus       108 ~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g  143 (662)
T 2z3y_A          108 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  143 (662)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            355999999999999999999999999999977654

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.23  E-value=0.00031  Score=57.95  Aligned_cols=31  Identities=26%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||..|+++|..|++.|.+|+|+++.
T Consensus        23 DVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~   53 (641)
T 3cp8_A           23 DVIVVGAGHAGCEAALAVARGGLHCLLITSD   53 (641)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEEec
Confidence            4599999999999999999999999999986

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.22  E-value=0.00035  Score=59.48  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      ++|+|||+|.+|+.+|..|++.|.+|+|+++.+++.+
T Consensus       279 ~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          279 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  315 (852)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCC
Confidence            3459999999999999999999999999999877643

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.22  E-value=0.00023  Score=56.98  Aligned_cols=33  Identities=15%  Similarity=0.133  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|||||||..|+.+|..|.+.+.+||||++.+.
T Consensus        44 rVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           44 NVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             EEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            349999999999999999999999999998754

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.21  E-value=0.00034  Score=55.34  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.
T Consensus        22 dVvIIGgG~aGl~aA~~la~~G~~V~liE~~   52 (478)
T 3dk9_A           22 DYLVIGGGSGGLASARRAAELGARAAVVESH   52 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4599999999999999999999999999975

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.21  E-value=0.00036  Score=54.85  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.
T Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (450)
T 1ges_A            6 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   36 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEcCC
Confidence            4599999999999999999999999999986

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.19  E-value=0.00031  Score=57.27  Aligned_cols=34  Identities=18%  Similarity=0.375  Sum_probs=30.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhc------CCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI------AKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~------g~~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+.+|..|++.      |.+|+|+|+.+.+
T Consensus        37 DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~   76 (584)
T 2gmh_A           37 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   76 (584)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCC
Confidence            459999999999999999999      9999999986543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.19  E-value=0.00038  Score=55.45  Aligned_cols=32  Identities=22%  Similarity=0.243  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+.+|..|++.|.+|+||++..
T Consensus        10 DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A           10 DVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            45999999999999999999999999999853

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.16  E-value=0.00034  Score=57.55  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=30.3

Q ss_pred             eEEEEcCchHHHHHHHHHhh-cCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN-IAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..|++ .|.+|+|+|+.+.
T Consensus        34 dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~   67 (639)
T 2dkh_A           34 DVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG   67 (639)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            56999999999999999999 9999999998643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.14  E-value=0.0018  Score=42.80  Aligned_cols=47  Identities=17%  Similarity=0.159  Sum_probs=36.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKL   73 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~   73 (148)
                      +++|+|.|..|..+|..|.+.|.+|+++++.      ++..+.+.    +.|+.++.
T Consensus         9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~~------~~~~~~~~----~~g~~~i~   55 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLASDIPLVVIETS------RTRVDELR----ERGVRAVL   55 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESC------HHHHHHHH----HTTCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECC------HHHHHHHH----HcCCCEEE
Confidence            4499999999999999999999999999975      33344444    35666553

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.09  E-value=0.00056  Score=54.00  Aligned_cols=32  Identities=25%  Similarity=0.251  Sum_probs=29.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus         8 dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            8 DLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            45999999999999999999999999999864

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.09  E-value=0.00041  Score=54.69  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +++|||||+.|+.+|..|++.|.+|+|+++ +.+
T Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~   39 (458)
T 1lvl_A            7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QAL   39 (458)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCC
Confidence            459999999999999999999999999998 444

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.08  E-value=0.00058  Score=54.47  Aligned_cols=36  Identities=22%  Similarity=0.199  Sum_probs=32.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +|+|||+|..|+-+|..|++.|++|+++++.+.+.+
T Consensus        22 dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg   57 (475)
T 3p1w_A           22 DVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGG   57 (475)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            459999999999999999999999999999877754

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.08  E-value=0.00053  Score=54.32  Aligned_cols=30  Identities=23%  Similarity=0.150  Sum_probs=28.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|||||+.|+.+|..|++.|.+|+||++
T Consensus        11 DvvVIGgG~aGl~aA~~la~~G~~V~liEk   40 (483)
T 3dgh_A           11 DLIVIGGGSAGLACAKEAVLNGARVACLDF   40 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCEEEEEEe
Confidence            459999999999999999999999999984

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.08  E-value=0.00056  Score=53.60  Aligned_cols=35  Identities=29%  Similarity=0.168  Sum_probs=31.7

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      ++|||+|..|+-+|..|++.|.+|+++++.+.+.+
T Consensus         9 v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg   43 (433)
T 1d5t_A            9 VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG   43 (433)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccc
Confidence            49999999999999999999999999999776643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.08  E-value=0.00046  Score=54.35  Aligned_cols=31  Identities=13%  Similarity=0.218  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.
T Consensus         5 dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~   35 (464)
T 2a8x_A            5 DVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK   35 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4599999999999999999999999999986

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.08  E-value=0.00045  Score=54.99  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhc---CCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI---AKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~---g~~Vtlv~~~~   48 (148)
                      +|+|||||+.|+.+|..|++.   |.+|+||++.+
T Consensus         4 dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            4 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            459999999999999999999   99999999874

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.06  E-value=0.00064  Score=53.94  Aligned_cols=30  Identities=30%  Similarity=0.313  Sum_probs=28.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|||||+.|+.+|..|++.|.+|+||++
T Consensus         8 DvvVIG~G~aGl~aA~~la~~G~~V~liEk   37 (488)
T 3dgz_A            8 DLLVIGGGSGGLACAKEAAQLGKKVAVADY   37 (488)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEEe
Confidence            469999999999999999999999999996

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.04  E-value=0.00069  Score=54.31  Aligned_cols=31  Identities=26%  Similarity=0.283  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+.+|..|++.|.+|+||++.
T Consensus        34 DVvVIGgGpaGl~aA~~la~~G~~V~liEk~   64 (519)
T 3qfa_A           34 DLIIIGGGSGGLAAAKEAAQYGKKVMVLDFV   64 (519)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            5699999999999999999999999999984

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.02  E-value=0.0005  Score=56.94  Aligned_cols=41  Identities=10%  Similarity=0.005  Sum_probs=32.3

Q ss_pred             ccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         108 TSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       108 ~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ++|++||+||+|||+..........+..+|.+|+.++.+|+
T Consensus       448 ~~t~v~gl~a~Ge~~~~~~hg~~~~sl~~g~~ag~~a~~~~  488 (662)
T 3gyx_A          448 RMTTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWY  488 (662)
T ss_dssp             TBCSSBTEECCSSSBCSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccCCeEeCccccccccCccHhHHHHHHHHHHHHHHHHH
Confidence            89999999999999753312236778889999999888763

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.00  E-value=0.00055  Score=57.83  Aligned_cols=32  Identities=19%  Similarity=0.174  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~   48 (148)
                      +|+|||||.+|+.+|..|++.|. +|+|+++.+
T Consensus         6 dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~   38 (830)
T 1pj5_A            6 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   38 (830)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence            45999999999999999999998 999999864

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=96.99  E-value=0.00074  Score=55.10  Aligned_cols=31  Identities=26%  Similarity=0.390  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         9 DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~   39 (588)
T 2wdq_A            9 DAVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4599999999999999999999999999985

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.99  E-value=0.00066  Score=56.16  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhh-----cCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN-----IAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~-----~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..|++     .|.+|+|+++.+.
T Consensus        10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A           10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            45999999999999999999     9999999998643

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.99  E-value=0.00071  Score=57.02  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=30.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||+|.+|+.+|..|++.|.+|+|+++.+.+
T Consensus       338 ~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~  371 (776)
T 4gut_A          338 SVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI  371 (776)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence            4599999999999999999999999999986544

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.96  E-value=0.0007  Score=53.97  Aligned_cols=29  Identities=24%  Similarity=0.368  Sum_probs=27.7

Q ss_pred             eEEEEcCchHHHHHHHHHhh-cCCeEEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSN-IAKKVTLIH   45 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~   45 (148)
                      +|+|||||+.|+.+|..|++ .|.+|+||+
T Consensus         9 dvvVIGgG~aGl~aA~~la~~~G~~V~liE   38 (495)
T 2wpf_A            9 DLVVIGAGSGGLEAGWNAATLYGKRVAVVD   38 (495)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CEEEECCChhHHHHHHHHHHhcCCeEEEEe
Confidence            45999999999999999999 999999999

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.95  E-value=0.0034  Score=41.19  Aligned_cols=30  Identities=27%  Similarity=0.257  Sum_probs=28.0

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         9 v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            9 YIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            399999999999999999999999999874

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.91  E-value=0.00089  Score=55.07  Aligned_cols=32  Identities=19%  Similarity=0.205  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|.+|+-+|..|++.|.+|+|+++..
T Consensus        20 DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~   51 (621)
T 2h88_A           20 DAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF   51 (621)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            46999999999999999999999999999853

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.90  E-value=0.00083  Score=54.25  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||+|.+|+-+|..|++ |.+|+|+++.+.
T Consensus        10 DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~   41 (540)
T 1chu_A           10 DVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV   41 (540)
T ss_dssp             SEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred             CEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence            45999999999999999999 999999998654

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=96.90  E-value=0.0011  Score=54.58  Aligned_cols=34  Identities=21%  Similarity=0.139  Sum_probs=30.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||..|+.+|..|++.|.+|+|+++.+..
T Consensus        48 dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~   81 (623)
T 3pl8_A           48 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   81 (623)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCC
Confidence            4599999999999999999999999999986543

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.89  E-value=0.00094  Score=52.58  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKLR   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~   51 (148)
                      +|+|||+|.+|+-+|..|++.|. +|+++|+.+.+.
T Consensus         6 ~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~g   41 (472)
T 1b37_A            6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   41 (472)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCC
Confidence            35999999999999999999998 899999876653

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=96.87  E-value=0.00094  Score=54.64  Aligned_cols=31  Identities=19%  Similarity=0.375  Sum_probs=28.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~   47 (148)
                      +|+|||||.+|+-+|..|++.|  .+|+|+++.
T Consensus         7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~   39 (602)
T 1kf6_A            7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKV   39 (602)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            4599999999999999999999  999999985

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.87  E-value=0.0012  Score=52.49  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~   50 (148)
                      +|+|||||+.|+.+|..|++.  +.+|+||++.+.+
T Consensus        13 ~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A           13 PFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            459999999999999999877  8999999987654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.83  E-value=0.00097  Score=54.22  Aligned_cols=30  Identities=20%  Similarity=0.252  Sum_probs=28.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|||||+.|+.+|..|++.|.+|+++++
T Consensus       109 dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A          109 DLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             cEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            569999999999999999999999999996

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.82  E-value=0.001  Score=55.13  Aligned_cols=31  Identities=19%  Similarity=0.188  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus         7 DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~   37 (660)
T 2bs2_A            7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLI   37 (660)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECchHHHHHHHHHHHHCCCcEEEEecc
Confidence            4599999999999999999999999999984

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.79  E-value=0.0046  Score=44.51  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=39.7

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEc
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKL   73 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~   73 (148)
                      ..|++|    +|||||.+|...+..|.+.|.+|+++.+.  +  .+.+. .+.+   ..++.++.
T Consensus        29 L~gk~V----LVVGgG~va~~ka~~Ll~~GA~VtVvap~--~--~~~l~-~l~~---~~~i~~i~   81 (223)
T 3dfz_A           29 LKGRSV----LVVGGGTIATRRIKGFLQEGAAITVVAPT--V--SAEIN-EWEA---KGQLRVKR   81 (223)
T ss_dssp             CTTCCE----EEECCSHHHHHHHHHHGGGCCCEEEECSS--C--CHHHH-HHHH---TTSCEEEC
T ss_pred             cCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEECCC--C--CHHHH-HHHH---cCCcEEEE
Confidence            568888    99999999999999999999999999753  2  23332 3322   45677653

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=96.76  E-value=0.0013  Score=53.90  Aligned_cols=49  Identities=24%  Similarity=0.224  Sum_probs=38.2

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|..     .+|++||+||+|+|+..  .+     -..+..++-.|++|+.++.++
T Consensus       359 ~GGi~vd~~-----~~~~IpGLyAaGe~a~~g~hGanrl~gnsl~~~~vfGr~Ag~~aa~~  414 (602)
T 1kf6_A          359 MGGIETDQN-----CETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATER  414 (602)
T ss_dssp             CCEEECCTT-----SBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEECCC-----CccccCCEEEccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            488999999     99999999999999631  10     124567778899999988765

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.73  E-value=0.002  Score=43.21  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +++|+|+|.+|..+|..|.+.|.+|+++++.+
T Consensus        21 ~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           21 YIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            34999999999999999999999999998753

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.70  E-value=0.0016  Score=50.00  Aligned_cols=66  Identities=14%  Similarity=0.001  Sum_probs=44.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCC-----------Cc--h-HHHHH-HHHhHHhcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKL-----------RC--E-KILID-RLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~-----------~~--~-~~~~~-~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      +|+|||||+.|+.+|..|++.|  .+|+++++.+..           ..  . ..+.. .+.+.+++.+++++.++.+..
T Consensus         6 dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~   85 (384)
T 2v3a_A            6 PLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVTG   85 (384)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCCCE
T ss_pred             cEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEEEE
Confidence            3499999999999999999998  468999875311           00  0 11111 122233468999998887777


Q ss_pred             Eec
Q psy5231          80 IIG   82 (148)
Q Consensus        80 i~~   82 (148)
                      +..
T Consensus        86 i~~   88 (384)
T 2v3a_A           86 IDP   88 (384)
T ss_dssp             EEG
T ss_pred             EEC
Confidence            654

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.68  E-value=0.00096  Score=55.76  Aligned_cols=35  Identities=17%  Similarity=0.353  Sum_probs=31.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcC--------CeEEEEEeCC-CC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIA--------KKVTLIHRNE-KL   50 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g--------~~Vtlv~~~~-~~   50 (148)
                      ++|+|||+|.+|+-+|..|.+.|        .+|+|+|+++ ++
T Consensus        57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            45699999999999999999988        8999999987 76

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.64  E-value=0.0022  Score=51.76  Aligned_cols=49  Identities=20%  Similarity=0.105  Sum_probs=38.5

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCccc--c-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY--F-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~--~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|..     .+|++||+||+|+|+...  +     -..+..|+-.|++|+.++.++
T Consensus       354 ~GGi~vd~~-----~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~  409 (540)
T 1chu_A          354 CGGVMVDDH-----GRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRR  409 (540)
T ss_dssp             SCEEECCTT-----CBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcEEECCC-----CCCccCCEEeccccccccccCCCcCcchhHHHHHHHHHHHHHHHHHh
Confidence            488999999     899999999999997311  0     125677888899999988765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.64  E-value=0.004  Score=49.12  Aligned_cols=58  Identities=21%  Similarity=0.102  Sum_probs=44.4

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCce
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHI   76 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~   76 (148)
                      +.+|++    .|||.|.+|+.+|..|.+.|++|++.++++.-  .+...+.|.    +.|++++.+..
T Consensus         7 ~~~k~v----~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~--~~~~~~~L~----~~gi~~~~g~~   64 (451)
T 3lk7_A            7 FENKKV----LVLGLARSGEAAARLLAKLGAIVTVNDGKPFD--ENPTAQSLL----EEGIKVVCGSH   64 (451)
T ss_dssp             TTTCEE----EEECCTTTHHHHHHHHHHTTCEEEEEESSCGG--GCHHHHHHH----HTTCEEEESCC
T ss_pred             cCCCEE----EEEeeCHHHHHHHHHHHhCCCEEEEEeCCccc--CChHHHHHH----hCCCEEEECCC
Confidence            457777    99999999999999999999999999876421  123334444    57999987654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.61  E-value=0.0034  Score=40.70  Aligned_cols=30  Identities=23%  Similarity=0.221  Sum_probs=27.8

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         7 i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            7 IIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            499999999999999999999999999874

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.59  E-value=0.0018  Score=53.28  Aligned_cols=32  Identities=28%  Similarity=0.306  Sum_probs=28.7

Q ss_pred             eEEEEcCchHHHHHHHHHh---h-cCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLS---N-IAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~---~-~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..++   + .|.+|+|+++..
T Consensus        24 DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           24 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            4699999999999999999   5 899999999753

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.58  E-value=0.0021  Score=47.74  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=32.7

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ...|++|    +|||||.+|...+..|.+.|.+|+++...
T Consensus        10 ~l~~k~V----LVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           10 QLKDKRI----LLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             CCTTCEE----EEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             EcCCCEE----EEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            4568888    99999999999999999999999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.56  E-value=0.0036  Score=41.79  Aligned_cols=30  Identities=27%  Similarity=0.228  Sum_probs=28.2

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         6 vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            6 FIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            499999999999999999999999999975

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.56  E-value=0.0032  Score=39.58  Aligned_cols=31  Identities=23%  Similarity=0.228  Sum_probs=27.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~   47 (148)
                      +++|+|+|.+|..++..|.+.| .+|+++.|.
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            3499999999999999999999 899998874

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.54  E-value=0.0029  Score=49.68  Aligned_cols=54  Identities=13%  Similarity=0.032  Sum_probs=41.2

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCc
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      +.+|++    .|||.|.+|+.+|..|.+.|.+|++.+.++.....        ..|+ .|+++..++
T Consensus         3 ~~~~~v----~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~--------~~l~-~G~~~~~g~   56 (439)
T 2x5o_A            3 YQGKNV----VIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL--------DKLP-EAVERHTGS   56 (439)
T ss_dssp             CTTCCE----EEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTG--------GGSC-TTSCEEESS
T ss_pred             CCCCEE----EEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchh--------HHhh-CCCEEEECC
Confidence            356777    99999999999999999999999999876543221        3344 677776554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.52  E-value=0.0081  Score=45.32  Aligned_cols=53  Identities=17%  Similarity=0.025  Sum_probs=40.0

Q ss_pred             ceEEEEcCchHHHH-HHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCce
Q psy5231          16 IFTDVIGGGNTAVE-EALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHI   76 (148)
Q Consensus        16 ~~v~ViGgG~~g~e-~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~   76 (148)
                      +++.|||.|-+|+. +|..|.++|.+|++.++++.    +...++|.    +.|++++.+..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~----~~~~~~L~----~~gi~v~~g~~   58 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY----PPMSTQLE----ALGIDVYEGFD   58 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC----TTHHHHHH----HTTCEEEESCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC----cHHHHHHH----hCCCEEECCCC
Confidence            45599999999996 89999999999999987643    12233444    57899886543

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.50  E-value=0.002  Score=53.38  Aligned_cols=31  Identities=19%  Similarity=0.247  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhc------CCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI------AKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~------g~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..|++.      |.+|+|+++.
T Consensus        24 DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           24 DLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            469999999999999999998      9999999974

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.44  E-value=0.0028  Score=52.43  Aligned_cols=49  Identities=14%  Similarity=0.053  Sum_probs=38.0

Q ss_pred             CCeEEecCCCCcccccCCCCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|..     .+|++||+||+|+|+..  .+     -..+..++-.|++|+.++.++
T Consensus       372 ~GGi~vd~~-----~~v~IpGLYAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~  427 (660)
T 2bs2_A          372 MGGIRTDYR-----GEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEH  427 (660)
T ss_dssp             CCEEECCTT-----SBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEECCC-----CceecCCEEeccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            488999999     99999999999997521  11     125677788899999888664

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.42  E-value=0.0031  Score=51.92  Aligned_cols=40  Identities=23%  Similarity=0.247  Sum_probs=30.5

Q ss_pred             ccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231         108 TSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       108 ~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      ..|++||+||+|+|++.........+..+|++|+.++.++
T Consensus       427 ~~t~I~GLyAaGe~a~~~~~r~~~~sl~~G~~ag~~aa~~  466 (643)
T 1jnr_A          427 RMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRF  466 (643)
T ss_dssp             TBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceeCCEEeeeccccccccccchhHHHHHHHHHHHHHHH
Confidence            4689999999999976432234556788899998887765

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.39  E-value=0.0099  Score=41.95  Aligned_cols=31  Identities=26%  Similarity=0.232  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~   32 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKD   32 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            3599999999999999999999999999874

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=96.39  E-value=0.0033  Score=50.88  Aligned_cols=31  Identities=26%  Similarity=0.212  Sum_probs=28.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|||+|+.|..+|..+++.|.+|.|||+.
T Consensus        44 DviVIG~GpaG~~aA~~aa~~G~kValIE~~   74 (542)
T 4b1b_A           44 DYVVIGGGPGGMASAKEAAAHGARVLLFDYV   74 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3699999999999999999999999999963

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.37  E-value=0.0033  Score=50.59  Aligned_cols=33  Identities=30%  Similarity=0.319  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +++|||+|..|+-+|..|++.|.+|.++|+...
T Consensus         9 D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            9 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            459999999999999999999999999998753

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.23  E-value=0.0055  Score=39.80  Aligned_cols=34  Identities=24%  Similarity=0.168  Sum_probs=29.6

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .++++    +|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         5 ~~~~v----~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            5 KNKQF----AVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             -CCSE----EEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             cCCcE----EEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34556    99999999999999999999999999874

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.18  E-value=0.0042  Score=49.44  Aligned_cols=33  Identities=30%  Similarity=0.354  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhh-cCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN-IAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~   49 (148)
                      +++|||+|..|+-+|..|++ .+.+|.|+|+.+.
T Consensus        19 D~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             eEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            45999999999999999998 5789999999754

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=95.99  E-value=0.0093  Score=47.59  Aligned_cols=34  Identities=24%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +++|||+|..|+-+|..|++.|.+|.++|+...+
T Consensus         7 d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   40 (504)
T 1n4w_A            7 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW   40 (504)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4599999999999999999999999999987644

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=95.99  E-value=0.0044  Score=49.93  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +++|||+|..|+-+|..|++ +.+|.|+|+...
T Consensus        28 D~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           28 DYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             cEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            45999999999999999999 999999999754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.92  E-value=0.009  Score=44.83  Aligned_cols=31  Identities=23%  Similarity=0.237  Sum_probs=28.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|.+|.-+|..|++.|.+|+++.|+
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAKTGHCVSVVSRS   34 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4599999999999999999999999999885

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.88  E-value=0.015  Score=46.13  Aligned_cols=31  Identities=16%  Similarity=0.256  Sum_probs=28.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|+|+|.+|..+|..|...|++|+++++.
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~~~~v~vId~d   35 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGENNDITIVDKD   35 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCSTTEEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            3599999999999999999999999999874

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.86  E-value=0.0098  Score=43.89  Aligned_cols=33  Identities=21%  Similarity=0.096  Sum_probs=29.5

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|.|||+|..|..+|..|++.|.+|+++.+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            345999999999999999999999999998753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.85  E-value=0.009  Score=40.92  Aligned_cols=30  Identities=17%  Similarity=0.007  Sum_probs=27.9

Q ss_pred             EEEEcCchHHHHHHHHHhhc-CCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNI-AKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~   47 (148)
                      ++|+|.|.+|..+|..|.+. |.+|+++++.
T Consensus        42 v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~   72 (183)
T 3c85_A           42 VLILGMGRIGTGAYDELRARYGKISLGIEIR   72 (183)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred             EEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence            49999999999999999999 9999999874

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.80  E-value=0.0099  Score=45.00  Aligned_cols=33  Identities=15%  Similarity=0.083  Sum_probs=29.7

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|+|||+|..|..+|..++..|.+|++++..+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            456999999999999999999999999998753

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=95.71  E-value=0.011  Score=47.12  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=30.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +++|||+|..|+-+|..|++.+.+|.++|+....
T Consensus        13 d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A           13 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            4599999999999999999999999999987543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.69  E-value=0.013  Score=43.56  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=29.4

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|.|||+|..|..+|..|++.|.+|+++.+.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            345999999999999999999999999998753

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.68  E-value=0.014  Score=42.58  Aligned_cols=32  Identities=19%  Similarity=0.020  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|.|||+|..|.-+|..|++.|.+|+++.|++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            45999999999999999999999999998754

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.65  E-value=0.0091  Score=44.65  Aligned_cols=31  Identities=16%  Similarity=0.284  Sum_probs=28.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|.+|.-+|..|++.|.+|+++.|+
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRSGEDVHFLLRR   34 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence            4599999999999999999999999999875

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.61  E-value=0.017  Score=45.91  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ++|.|||+|..|.-+|..|++.|.+|+++.++++
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            5669999999999999999999999999988654

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=95.56  E-value=0.019  Score=43.52  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=29.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|+|+|||..|.+++..+.+.|.+|++++..+
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~   34 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNP   34 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            667999999999999999999999999998643

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=95.53  E-value=0.0096  Score=48.11  Aligned_cols=49  Identities=18%  Similarity=0.056  Sum_probs=37.8

Q ss_pred             CCeEEecCCCCccccc------CCCCCeEEecccCccc------cchhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTS------TNISGVFCRWRCTRLY------FIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~------t~~~~vya~GD~~~~~------~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|..     ++      |.+||+||+|++++..      +-..+..++-.|++|+.++.++
T Consensus       502 ~GGl~vd~~-----~~vl~~~g~~I~GLyAaGe~~~g~~g~~~~~g~sl~~~~v~Gr~Ag~~aa~~  562 (566)
T 1qo8_A          502 MGGVAINTT-----ASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKH  562 (566)
T ss_dssp             CCEECBCTT-----CEEEBTTSCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccEEECCC-----CeEECCCCCEeCCEEecccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            477888888     66      7899999999997531      0125678888999999998765

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=95.52  E-value=0.0098  Score=48.09  Aligned_cols=49  Identities=16%  Similarity=0.083  Sum_probs=38.4

Q ss_pred             CCeEEecCCCCccccc------CCCCCeEEecccCccc------cchhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTS------TNISGVFCRWRCTRLY------FIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~------t~~~~vya~GD~~~~~------~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|..     .+      |.+||+||+|.+++..      +-..+..++-.|++|+.++.++
T Consensus       507 ~GGl~id~~-----~~vl~~~g~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~~fGr~Ag~~aa~~  567 (571)
T 1y0p_A          507 MGGVMIDTK-----AEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKY  567 (571)
T ss_dssp             CCEEEBCTT-----CEEECTTSCEEEEEEECSTTEESSSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEECCC-----ceEECCCCCCcCCcEeceEcCCCCcCCCCCchHhHHHHHHHHHHHHHHHHHH
Confidence            478888888     66      7899999999996531      0125678889999999998765

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=95.47  E-value=0.01  Score=48.06  Aligned_cols=50  Identities=14%  Similarity=0.078  Sum_probs=38.3

Q ss_pred             CCeEEecCCCCccccc-------CCCCCeEEecccCccc------cchhHHHHHHHHHHHHHHHHhhC
Q psy5231          94 DGYIKTKLNKKTGYTS-------TNISGVFCRWRCTRLY------FIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~-------t~~~~vya~GD~~~~~------~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      -|.|.+|..     .+       |.+||+||+|.+++..      +-..+..++-.|++|+.++.+++
T Consensus       507 ~GGl~id~~-----~~Vl~~~g~~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~~~  569 (572)
T 1d4d_A          507 MGGLVIDTK-----AEVKSEKTAKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFA  569 (572)
T ss_dssp             CCEEEBCTT-----CEEEBSSSSSEEEEEEECSTTEESTTTTSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCeEECCC-----CeEEcCCCCcccCCeeECeecccCCCCCCCCchHhHHHHHHHHHHHHHHHHHHh
Confidence            477888887     54       8899999999997431      11256788899999999988753

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=95.44  E-value=0.014  Score=47.52  Aligned_cols=33  Identities=18%  Similarity=0.167  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~   49 (148)
                      +++|||||..|+-+|..|++.+ .+|.|+|..+.
T Consensus         8 DyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            8 DFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4599999999999999999987 69999998754

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=95.41  E-value=0.019  Score=46.82  Aligned_cols=34  Identities=26%  Similarity=0.177  Sum_probs=30.7

Q ss_pred             eEEEEcCchHHHHHHHHHhh-cCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN-IAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~   50 (148)
                      +++|||+|..|+-+|..|++ .+.+|.++|+....
T Consensus        26 d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            45999999999999999999 79999999997654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.40  E-value=0.015  Score=46.05  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=32.6

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ...|++|    +|+|||.+|...+..|.+.|.+|+++...
T Consensus         9 ~l~~~~v----lVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A            9 QLRDRDC----LIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             CCBTCEE----EEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             ECCCCEE----EEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            3568888    99999999999999999999999999863

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.40  E-value=0.016  Score=42.49  Aligned_cols=38  Identities=21%  Similarity=0.231  Sum_probs=32.5

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +....++++    +|+|+|.+|..+|..|++.|.+|+++.|+
T Consensus       114 ~~~l~~k~v----lViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          114 SFIRPGLRI----LLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             TCCCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcCcCCCEE----EEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            334567777    99999999999999999999999998775

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=95.36  E-value=0.0098  Score=48.89  Aligned_cols=54  Identities=15%  Similarity=0.074  Sum_probs=36.2

Q ss_pred             CCeEEecCCCCc----ccccCCCCCeEEecccCc--ccc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKT----GYTSTNISGVFCRWRCTR--LYF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~----~~~~t~~~~vya~GD~~~--~~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|.....    ....|++||+||+|+|+.  ..+     -..+..++-.|++|+.++.++
T Consensus       367 mGGi~~d~~~~Vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~  431 (621)
T 2h88_A          367 MGGIPTNYKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALTIAET  431 (621)
T ss_dssp             SCBEEBCTTSEEEEEETTEEEEEEEEEECGGGEECSSSTTSCCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcEeECCCCeEeecccCCCcccCceEEccccccccccCCCCCchHhHHHHHHHHHHHHHHHHHh
Confidence            377888876100    002378999999999853  110     125678888899999988765

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.35  E-value=0.014  Score=43.21  Aligned_cols=32  Identities=28%  Similarity=0.310  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|.+|.-+|..|++.|.+|+++.|+.
T Consensus         4 kI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            45999999999999999999999999999863

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.32  E-value=0.023  Score=42.65  Aligned_cols=29  Identities=21%  Similarity=0.313  Sum_probs=26.8

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+|||+|.+|.-+|..|++.|.+|+++ ++
T Consensus        22 I~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           22 VAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             EEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            399999999999999999999999999 54

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=95.31  E-value=0.017  Score=46.66  Aligned_cols=34  Identities=29%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-CCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~   50 (148)
                      +++|||+|..|+-+|..|++. +.+|.++|+....
T Consensus        15 d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           15 DYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            459999999999999999998 8999999997544

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.26  E-value=0.036  Score=43.30  Aligned_cols=30  Identities=13%  Similarity=0.130  Sum_probs=28.3

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+|+|.|..|..+|..|.+.|.+|+++++.
T Consensus         7 viIiG~Gr~G~~va~~L~~~g~~vvvId~d   36 (413)
T 3l9w_A            7 VIIAGFGRFGQITGRLLLSSGVKMVVLDHD   36 (413)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            499999999999999999999999999975

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.26  E-value=0.038  Score=41.67  Aligned_cols=39  Identities=15%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~   48 (148)
                      ++...||++    +|+|+|-+|-.+|..|++.|. +|+++.|.+
T Consensus       149 ~~~l~gk~~----lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          149 GHDIIGKKM----TICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TCCCTTSEE----EEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCccCCEE----EEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            445567888    999999999999999999997 899999864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.24  E-value=0.022  Score=40.16  Aligned_cols=36  Identities=14%  Similarity=0.129  Sum_probs=29.9

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ....++    .|||.|..|..+|..|++.|.+|+++.|.+
T Consensus        17 ~~~~~I----~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           17 FQGMEI----TIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             ---CEE----EEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            344555    999999999999999999999999998764

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.19  E-value=0.017  Score=43.30  Aligned_cols=38  Identities=18%  Similarity=0.101  Sum_probs=33.3

Q ss_pred             hhhhcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +....|+++    +|||+|. +|.-+|..|...|..||++++.
T Consensus       160 ~i~l~gk~v----vVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          160 GVPIAGRHA----VVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             TCCCTTCEE----EEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCCCCEE----EEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            456778888    9999995 7999999999999999999764

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.17  E-value=0.018  Score=42.88  Aligned_cols=40  Identities=23%  Similarity=0.175  Sum_probs=34.3

Q ss_pred             hhhhhcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           5 FGILALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .+....|+++    +|||+|. +|.-+|..|...|..||++++..
T Consensus       153 ~~i~l~gk~v----vVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t  193 (288)
T 1b0a_A          153 YNIDTFGLNA----VVIGASNIVGRPMSMELLLAGCTTTVTHRFT  193 (288)
T ss_dssp             TTCCCTTCEE----EEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cCCCCCCCEE----EEECCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            3456778888    9999996 69999999999999999998654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.16  E-value=0.024  Score=41.78  Aligned_cols=31  Identities=23%  Similarity=0.272  Sum_probs=28.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||+|.+|.-+|..|++.|.+|+++.|+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4599999999999999999999999999774

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.12  E-value=0.021  Score=43.12  Aligned_cols=30  Identities=13%  Similarity=0.185  Sum_probs=27.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|||+|.+|.-+|..|++.|.+|+++.|
T Consensus         5 kI~IiGaG~~G~~~a~~L~~~g~~V~~~~r   34 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLALAGEAINVLAR   34 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHHTTCCEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEEEC
Confidence            359999999999999999999999999986

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=95.10  E-value=0.011  Score=48.28  Aligned_cols=49  Identities=22%  Similarity=0.109  Sum_probs=36.4

Q ss_pred             CCeEEecCCCCcccccC----------CCCCeEEecccCc--ccc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTST----------NISGVFCRWRCTR--LYF-----IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~t----------~~~~vya~GD~~~--~~~-----~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.|.+|..     .++          ++||+||+|+|+.  ..+     -..+..++-.|++|+.++.++
T Consensus       357 ~GGi~vd~~-----~~vl~~~~~~~g~~I~GLyAaGe~a~~g~hG~nrl~gnsl~~~~vfG~~Ag~~aa~~  422 (588)
T 2wdq_A          357 MGGIPTKVT-----GQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQES  422 (588)
T ss_dssp             CCBEEBCTT-----CEEEEECTTSCEEEEEEEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHTHHHH
T ss_pred             CceEEECCC-----CCCcccccccCCCeeCCceeCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Confidence            478899988     777          8999999999753  110     124677788899999887654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=95.06  E-value=0.078  Score=42.21  Aligned_cols=21  Identities=19%  Similarity=0.151  Sum_probs=18.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI   37 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~   37 (148)
                      +|+|||+|++|+.+|..|.+.
T Consensus        41 Dvi~IGaGp~gLa~A~~L~~~   61 (501)
T 4b63_A           41 DLLCVGFGPASLAIAIALHDA   61 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH
T ss_pred             cEEEEcccHHHHHHHHHHHhc
Confidence            469999999999999998764

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.01  E-value=0.02  Score=42.94  Aligned_cols=40  Identities=28%  Similarity=0.281  Sum_probs=33.9

Q ss_pred             hhhhhcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           5 FGILALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .+....|+++    +|||.|. +|.-+|..|.+.|..||+++++.
T Consensus       159 ~~i~l~Gk~v----vVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T  199 (300)
T 4a26_A          159 CGIEMAGKRA----VVLGRSNIVGAPVAALLMKENATVTIVHSGT  199 (300)
T ss_dssp             HTCCCTTCEE----EEECCCTTTHHHHHHHHHHTTCEEEEECTTS
T ss_pred             cCCCCCCCEE----EEECCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3456788898    9999765 89999999999999999998753

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.01  E-value=0.021  Score=42.53  Aligned_cols=40  Identities=25%  Similarity=0.217  Sum_probs=33.9

Q ss_pred             hhhhhcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           5 FGILALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .+....|+++    +|||.|. +|.-+|..|.+.|..||++++..
T Consensus       154 ~~i~l~Gk~v----vVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t  194 (285)
T 3p2o_A          154 YEIDLEGKDA----VIIGASNIVGRPMATMLLNAGATVSVCHIKT  194 (285)
T ss_dssp             TTCCCTTCEE----EEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             hCCCCCCCEE----EEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence            3456788888    9999765 79999999999999999998753

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.99  E-value=0.028  Score=41.93  Aligned_cols=31  Identities=23%  Similarity=0.201  Sum_probs=28.3

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+|.|||.|..|..+|..|+ .|.+|+++.++
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~   43 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVS   43 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSC
T ss_pred             CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECC
Confidence            45599999999999999999 99999999875

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=94.98  E-value=0.023  Score=46.36  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-CCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~   48 (148)
                      +++|||||..|+-+|..|++. +.+|.|+|..+
T Consensus        21 DyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           21 DYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            469999999999999999975 78999999876

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.97  E-value=0.02  Score=42.60  Aligned_cols=40  Identities=25%  Similarity=0.058  Sum_probs=33.9

Q ss_pred             hhhhhcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           5 FGILALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .+....|+++    +|||.| .+|.-+|..|...|..||+++++.
T Consensus       155 ~~i~l~Gk~v----vVvGrs~iVG~plA~lL~~~gAtVtv~hs~T  195 (286)
T 4a5o_A          155 TGADLYGMDA----VVVGASNIVGRPMALELLLGGCTVTVTHRFT  195 (286)
T ss_dssp             TTCCCTTCEE----EEECTTSTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             hCCCCCCCEE----EEECCCchhHHHHHHHHHHCCCeEEEEeCCC
Confidence            3456788998    999965 589999999999999999998753

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=94.97  E-value=0.03  Score=39.58  Aligned_cols=36  Identities=28%  Similarity=0.153  Sum_probs=30.8

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +.|+++    +|.|+ |.+|..++..|.+.|.+|+++.|+.
T Consensus        19 l~~~~i----lVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           19 FQGMRV----LVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             --CCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCeE----EEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            457777    99998 9999999999999999999999863

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.96  E-value=0.015  Score=38.32  Aligned_cols=33  Identities=36%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++++    +|+|+|.+|..++..|...|.+|+++.|.
T Consensus        21 ~~~v----~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           21 GNKI----LLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CCEE----EEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             CCEE----EEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            6666    99999999999999999999998888774

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.95  E-value=0.028  Score=41.33  Aligned_cols=32  Identities=25%  Similarity=0.153  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|.|||.|..|..+|..|++.|.+|+++.|++
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            56999999999999999999999999998753

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=94.94  E-value=0.033  Score=43.12  Aligned_cols=38  Identities=18%  Similarity=0.144  Sum_probs=30.9

Q ss_pred             cc-CCCCCeEEecccCccc----cchhHHHHHHHHHHHHHHHHh
Q psy5231         108 TS-TNISGVFCRWRCTRLY----FIDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus       108 ~~-t~~~~vya~GD~~~~~----~~~~~~~A~~~G~~aA~~i~~  146 (148)
                      |+ +.+||+|++|++.+..    ++ ++..|...|+.|+.++.+
T Consensus       358 mes~~~~gly~~GE~ldv~g~~GGy-nlq~a~~sg~~ag~~~~~  400 (401)
T 2gqf_A          358 MESNQVSGLYFIGEVLDVTGWLGGY-NFQWAWSSAYACALSISR  400 (401)
T ss_dssp             CBBSSSTTEEECGGGBSCEECTTTH-HHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCCEEEEEEeEEeccCCCCH-HHHHHHHHHHHHHHHHhc
Confidence            77 4899999999987642    23 778899999999998854

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=94.94  E-value=0.023  Score=42.36  Aligned_cols=39  Identities=28%  Similarity=0.255  Sum_probs=33.4

Q ss_pred             hhhhhcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeC
Q psy5231           5 FGILALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++....|+++    +|||.|. +|--+|..|...|..||++++.
T Consensus       155 ~~i~l~Gk~v----vVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  194 (285)
T 3l07_A          155 YGIKTEGAYA----VVVGASNVVGKPVSQLLLNAKATVTTCHRF  194 (285)
T ss_dssp             TTCCCTTCEE----EEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             hCCCCCCCEE----EEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            3456778888    9999765 7999999999999999999875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=94.93  E-value=0.021  Score=41.94  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=32.2

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +...++++    +|+|+|..|..+|..|.+.|.+|+++.|+
T Consensus       115 ~~~~~~~v----lvlGaGg~g~a~a~~L~~~G~~v~v~~R~  151 (272)
T 1p77_A          115 WLRPNQHV----LILGAGGATKGVLLPLLQAQQNIVLANRT  151 (272)
T ss_dssp             CCCTTCEE----EEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCcCCCEE----EEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            34457777    99999999999999999999999999885

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.90  E-value=0.03  Score=41.80  Aligned_cols=30  Identities=37%  Similarity=0.602  Sum_probs=27.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|.+|.-+|..|+ .|.+|+++.|+
T Consensus         4 kI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~   33 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS-LYHDVTVVTRR   33 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH-TTSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHh-cCCceEEEECC
Confidence            4599999999999999999 89999999875

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.89  E-value=0.032  Score=41.46  Aligned_cols=38  Identities=21%  Similarity=0.190  Sum_probs=32.9

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +....|+++    .|||.|.+|..+|..|..+|.+|+++.|.
T Consensus       152 ~~~l~g~~v----~IiG~G~iG~~~a~~l~~~G~~V~~~d~~  189 (300)
T 2rir_A          152 DYTIHGSQV----AVLGLGRTGMTIARTFAALGANVKVGARS  189 (300)
T ss_dssp             SSCSTTSEE----EEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCCEE----EEEcccHHHHHHHHHHHHCCCEEEEEECC
Confidence            344567777    99999999999999999999999999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.89  E-value=0.037  Score=40.14  Aligned_cols=32  Identities=22%  Similarity=0.056  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|.|+|.+|-.++..|.+.|.+|+.+.|++
T Consensus         7 ~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            7 TLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             EEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            44999999999999999999999999998864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.87  E-value=0.031  Score=40.58  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=29.8

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      .+++|    +|+|.|-+|.++|..|++.|. +++++.+.
T Consensus        30 ~~~~V----lVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           30 KDSRV----LIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HHCEE----EEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCeE----EEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            45666    999999999999999999996 89999874

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=94.87  E-value=0.033  Score=41.30  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=32.6

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ....|+++    .|||.|.+|..+|..|..+|.+|+++.|.
T Consensus       151 ~~l~g~~v----~IiG~G~iG~~~a~~l~~~G~~V~~~dr~  187 (293)
T 3d4o_A          151 FTIHGANV----AVLGLGRVGMSVARKFAALGAKVKVGARE  187 (293)
T ss_dssp             SCSTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEE----EEEeeCHHHHHHHHHHHhCCCEEEEEECC
Confidence            34567777    99999999999999999999999998875

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.84  E-value=0.032  Score=41.99  Aligned_cols=31  Identities=26%  Similarity=0.199  Sum_probs=28.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|.+|..+|..|++.|.+|+++.|+
T Consensus         6 ki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            6 TYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4599999999999999999999999999764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.81  E-value=0.034  Score=43.91  Aligned_cols=33  Identities=15%  Similarity=0.348  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +++|||.|.+|.-+|..|++.|.+|+++.+.++
T Consensus        10 ~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A           10 RIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             EEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            459999999999999999999999999988643

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=94.80  E-value=0.033  Score=46.09  Aligned_cols=36  Identities=19%  Similarity=0.037  Sum_probs=33.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +++|+|+|..++-+|..|++.|++|.++++++.+.+
T Consensus        10 D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg   45 (650)
T 1vg0_A           10 DVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGG   45 (650)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccC
Confidence            459999999999999999999999999999988865

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.80  E-value=0.044  Score=37.49  Aligned_cols=31  Identities=19%  Similarity=0.335  Sum_probs=28.3

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|.|+ |.+|-.++..|.+.|.+|+++.|++
T Consensus         6 ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             EEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            499998 9999999999999999999998853

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.72  E-value=0.034  Score=41.47  Aligned_cols=33  Identities=21%  Similarity=0.165  Sum_probs=29.7

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .+|.|||.|..|..+|..|++.|.+|+++.|.+
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            356999999999999999999999999998754

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.71  E-value=0.038  Score=41.59  Aligned_cols=33  Identities=24%  Similarity=0.169  Sum_probs=29.6

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +.+|.|||.|..|.-+|..|++.|.+|+++.|.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            345699999999999999999999999999874

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.69  E-value=0.032  Score=42.67  Aligned_cols=31  Identities=26%  Similarity=0.304  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|..|.-+|..|++.|.+|+++.|+
T Consensus        31 kI~VIGaG~mG~alA~~La~~G~~V~l~~r~   61 (356)
T 3k96_A           31 PIAILGAGSWGTALALVLARKGQKVRLWSYE   61 (356)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred             eEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3599999999999999999999999999874

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=94.67  E-value=0.03  Score=41.50  Aligned_cols=39  Identities=18%  Similarity=0.086  Sum_probs=33.4

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~   48 (148)
                      ++...++++    +|+|+|-.|-.+|..|.+.|. +|+++.|..
T Consensus       112 ~~~l~~k~v----lvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          112 YEGIEDAYI----LILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             STTGGGCCE----EEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CCCcCCCEE----EEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            344567888    999999999999999999997 899998863

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.66  E-value=0.038  Score=41.15  Aligned_cols=31  Identities=19%  Similarity=0.159  Sum_probs=28.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC--eEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK--KVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~   47 (148)
                      +|+|||+|.+|.-+|..|+..|.  +|+++.+.
T Consensus         9 kI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            9 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            45999999999999999999998  99999875

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.63  E-value=0.053  Score=39.71  Aligned_cols=32  Identities=28%  Similarity=0.281  Sum_probs=28.9

Q ss_pred             eEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|.|| |.+|-.++..|.+.|++|+.+.|++
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~   34 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKP   34 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            3589998 9999999999999999999998854

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.62  E-value=0.038  Score=43.75  Aligned_cols=33  Identities=15%  Similarity=0.213  Sum_probs=29.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|.|||+|..|.-+|..|++.|.+|+++.+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            457999999999999999999999999998753

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.59  E-value=0.023  Score=41.80  Aligned_cols=32  Identities=25%  Similarity=0.149  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|.|||.|..|..+|..|++.|.+|+++.|++
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            46999999999999999999999999998854

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=94.58  E-value=0.029  Score=46.28  Aligned_cols=37  Identities=24%  Similarity=0.219  Sum_probs=31.9

Q ss_pred             ccCC-CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231         108 TSTN-ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       108 ~~t~-~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      ++|. +||+|.+|.+++..   ....|+++|.+|+.|+.++
T Consensus       384 Le~k~~~gLf~AGqinGt~---GyeEAaaqGl~AG~nAa~~  421 (637)
T 2zxi_A          384 LETKKIRGLFHAGNFNGTT---GYEEAAGQGIVAGINAALR  421 (637)
T ss_dssp             SBBSSSBTEEECGGGGTBC---SHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCEEEeeecCCcc---hHHHHHHHHHHHHHHHHHH
Confidence            7776 89999999998876   4469999999999999875

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.57  E-value=0.039  Score=43.94  Aligned_cols=31  Identities=19%  Similarity=0.349  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||.|.+|.-+|..|++.|.+|+++.+.
T Consensus        10 ~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~   40 (478)
T 2y0c_A           10 NLTIIGSGSVGLVTGACLADIGHDVFCLDVD   40 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence            3599999999999999999999999999874

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.57  E-value=0.058  Score=42.99  Aligned_cols=50  Identities=16%  Similarity=0.147  Sum_probs=38.0

Q ss_pred             eEEEEcCchHHHH-HHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCc
Q psy5231          17 FTDVIGGGNTAVE-EALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus        17 ~v~ViGgG~~g~e-~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      +|.|||-|-+|+. +|..|.+.|.+|+..+..+     +...++|.    +.|++++.+.
T Consensus        24 ~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~-----~~~~~~l~----~~gi~~~~g~   74 (494)
T 4hv4_A           24 HIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP-----NSVTQHLT----ALGAQIYFHH   74 (494)
T ss_dssp             EEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC-----CHHHHHHH----HTTCEEESSC
T ss_pred             EEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC-----CHHHHHHH----HCCCEEECCC
Confidence            3499999999996 7999999999999987542     12233343    5799988764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=94.53  E-value=0.035  Score=44.38  Aligned_cols=37  Identities=19%  Similarity=0.155  Sum_probs=32.2

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ....||.+    +|+|+|.+|..+|..|+..|.+|+++++.
T Consensus       261 ~~L~GKtV----vVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          261 VMIAGKVA----VVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             CCCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcccCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            34568888    99999999999999999999999888653

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=94.53  E-value=0.033  Score=41.15  Aligned_cols=37  Identities=19%  Similarity=0.149  Sum_probs=31.6

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++...++++    +|+|+|-+|..+|..|++.| +|+++.|+
T Consensus       123 ~~~l~~k~v----lV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          123 IGRVKDKNI----VIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             HCCCCSCEE----EEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCCcCCCEE----EEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            334567777    99999999999999999999 99998774

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.52  E-value=0.051  Score=39.12  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=30.3

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .++++    .|||.|..|.-+|..|++.|.+|+++.|.+
T Consensus        18 ~~~kI----giIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           18 QGMKI----AVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             -CCEE----EEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCeE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            34555    999999999999999999999999998753

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=94.49  E-value=0.019  Score=46.63  Aligned_cols=34  Identities=21%  Similarity=0.122  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhh-cCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN-IAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~   50 (148)
                      +++|||||..|+-+|..|++ .+.+|.|+|+.+..
T Consensus         4 D~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            4 DYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             EEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            45899999999999999998 68999999987543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.49  E-value=0.14  Score=37.39  Aligned_cols=31  Identities=19%  Similarity=0.192  Sum_probs=28.2

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|.|+ |.+|-.++..|.+.|.+|+++.|..
T Consensus         7 ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            7 ILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             EEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             EEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            499997 9999999999999999999998864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.47  E-value=0.041  Score=43.33  Aligned_cols=30  Identities=10%  Similarity=0.232  Sum_probs=27.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||.|.+|.-+|..|++ |.+|+++.+.
T Consensus        38 kIaVIGlG~mG~~lA~~La~-G~~V~~~D~~   67 (432)
T 3pid_A           38 KITISGTGYVGLSNGVLIAQ-NHEVVALDIV   67 (432)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TSEEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHc-CCeEEEEecC
Confidence            67999999999999999998 9999999875

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=94.45  E-value=0.032  Score=41.46  Aligned_cols=39  Identities=31%  Similarity=0.252  Sum_probs=33.7

Q ss_pred             hhhhcCCcccceEEEEcCch-HHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGN-TAVEEALYLSNI--AKKVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~--g~~Vtlv~~~~   48 (148)
                      +....|+++    +|||.|. +|.-+|..|.+.  +..||+.++..
T Consensus       153 ~i~l~gk~v----vVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t  194 (281)
T 2c2x_A          153 DISIAGAHV----VVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT  194 (281)
T ss_dssp             TCCCTTCEE----EEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC
T ss_pred             CCCCCCCEE----EEECCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence            556788888    9999996 599999999999  89999998654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.43  E-value=0.044  Score=43.28  Aligned_cols=31  Identities=19%  Similarity=0.275  Sum_probs=28.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||.|.+|.-+|..|++.|.+|+++.+.
T Consensus         4 kI~VIG~G~vG~~lA~~La~~G~~V~~~D~~   34 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAELGANVRCIDTD   34 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCCEEEEEECC
Confidence            4599999999999999999999999999875

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.43  E-value=0.06  Score=39.11  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=28.7

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|.|+|.+|-.++..|.+.|.+|+.+.|..
T Consensus         6 ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   36 (286)
T 3gpi_A            6 ILIAGCGDLGLELARRLTAQGHEVTGLRRSA   36 (286)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4999999999999999999999999999864

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=94.42  E-value=0.045  Score=41.99  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ...|+++    +|+|+|.+|..++..+.+.|.+|.++...
T Consensus        11 ~~~~k~I----lIlG~G~~g~~la~aa~~~G~~vi~~d~~   46 (389)
T 3q2o_A           11 ILPGKTI----GIIGGGQLGRMMALAAKEMGYKIAVLDPT   46 (389)
T ss_dssp             CCTTSEE----EEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEE----EEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4567777    99999999999999999999999999764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.41  E-value=0.05  Score=40.36  Aligned_cols=31  Identities=13%  Similarity=0.030  Sum_probs=28.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||.|..|.-+|..|++.|.+|+++.|+
T Consensus         9 ~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   39 (303)
T 3g0o_A            9 HVGIVGLGSMGMGAARSCLRAGLSTWGADLN   39 (303)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            3499999999999999999999999999774

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.40  E-value=0.034  Score=41.21  Aligned_cols=32  Identities=22%  Similarity=0.126  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|.|||.|..|..+|..|++.|.+|+++.|++
T Consensus        17 ~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~   48 (296)
T 3qha_A           17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRI   48 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHTTSTTCEEEECSST
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            34999999999999999999999999998864

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.40  E-value=0.041  Score=41.05  Aligned_cols=30  Identities=13%  Similarity=0.271  Sum_probs=28.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|.|||+|..|.-+|..|++.|.+|+++.|
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            459999999999999999999999999987

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=94.40  E-value=0.063  Score=37.39  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=28.3

Q ss_pred             eEEEEc-CchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIG-GGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|+| +|.+|..+|..|.+.|.+|+++.|.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            459999 9999999999999999999999875

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.34  E-value=0.02  Score=40.81  Aligned_cols=30  Identities=13%  Similarity=0.072  Sum_probs=26.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|+|+|.+|..+|..|.+.|. |+++++.
T Consensus        11 ~viI~G~G~~G~~la~~L~~~g~-v~vid~~   40 (234)
T 2aef_A           11 HVVICGWSESTLECLRELRGSEV-FVLAEDE   40 (234)
T ss_dssp             EEEEESCCHHHHHHHHHSTTSEE-EEEESCG
T ss_pred             EEEEECCChHHHHHHHHHHhCCe-EEEEECC
Confidence            34999999999999999999998 9999764

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=94.34  E-value=0.045  Score=40.20  Aligned_cols=38  Identities=24%  Similarity=0.155  Sum_probs=32.3

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++...++++    +|||+|..|-.+|..|.+.|.+|+++.|.
T Consensus       124 ~~~~~~~~v----~iiGaG~~g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A          124 IPEVKEKSI----LVLGAGGASRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             CTTGGGSEE----EEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCCcCCCEE----EEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence            445567777    99999999999999999999989888764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.33  E-value=0.049  Score=40.79  Aligned_cols=32  Identities=25%  Similarity=0.221  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~   48 (148)
                      +|+|||+|.+|.-+|..|+..|. +|+++.+.+
T Consensus         6 kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            6 KIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            45999999999999999999998 999998764

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=94.32  E-value=0.046  Score=41.40  Aligned_cols=38  Identities=16%  Similarity=0.139  Sum_probs=32.6

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ....|+++    .|||.|.+|..+|..|+.+|.+|+++.+..
T Consensus       146 ~~l~g~~v----gIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  183 (334)
T 2dbq_A          146 YDVYGKTI----GIIGLGRIGQAIAKRAKGFNMRILYYSRTR  183 (334)
T ss_dssp             CCCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCCCCEE----EEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            34556666    999999999999999999999999988754

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.30  E-value=0.044  Score=43.70  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-CC-eEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-AK-KVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-g~-~Vtlv~~~~~   49 (148)
                      +|+|||.|.+|.-+|..|++. |. +|+++.+.+.
T Consensus        20 kIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           20 KIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             EEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             EEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            459999999999999999999 99 9999988654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.29  E-value=0.073  Score=36.83  Aligned_cols=32  Identities=28%  Similarity=0.275  Sum_probs=28.6

Q ss_pred             eEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|.|+ |.+|-.++..|.+.|.+|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            3599995 9999999999999999999999863

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=94.29  E-value=0.038  Score=41.85  Aligned_cols=39  Identities=23%  Similarity=0.048  Sum_probs=33.4

Q ss_pred             hhhhhcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeC
Q psy5231           5 FGILALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|....|+++    +|||+|. +|--+|..|...|..||++.|.
T Consensus       171 ~g~~l~gk~v----vVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          171 EGNRLYGKKC----IVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTCTTTTCEE----EEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             cCCCCCCCEE----EEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            4667788888    9999995 5999999999999999988653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.28  E-value=0.058  Score=41.34  Aligned_cols=36  Identities=22%  Similarity=0.365  Sum_probs=31.1

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ..++++    +|+|+|.+|..+|..+...|.+|+++.+++
T Consensus       164 l~~~~V----~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          164 VAPASV----VILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             BCCCEE----EEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEE----EEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            345566    999999999999999999999999998753

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.28  E-value=0.11  Score=40.93  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=28.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+|+|||-|.+|+-+|..|++.|.+|+.+...
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did   53 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVN   53 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECC
Confidence            45699999999999999999999999999753

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=94.22  E-value=0.055  Score=40.89  Aligned_cols=38  Identities=18%  Similarity=0.079  Sum_probs=32.8

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ....|+++    .|||.|.+|..+|..|..+|.+|+++.+..
T Consensus       151 ~~l~g~~v----gIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          151 YGLTQSTV----GIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             CCCTTCEE----EEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             cCCCCCEE----EEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            34566777    999999999999999999999999998754

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=94.21  E-value=0.035  Score=43.99  Aligned_cols=38  Identities=18%  Similarity=0.193  Sum_probs=33.3

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +.+..||.+    +|+|.|.+|..+|..+..+|.+|++.++.
T Consensus       242 g~~L~GKTV----gVIG~G~IGr~vA~~lrafGa~Viv~d~d  279 (464)
T 3n58_A          242 DVMMAGKVA----VVCGYGDVGKGSAQSLAGAGARVKVTEVD  279 (464)
T ss_dssp             CCCCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcccCCEE----EEECcCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            345678888    99999999999999999999999988764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.19  E-value=0.05  Score=40.51  Aligned_cols=37  Identities=27%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      +...++++    +|+|+|..|..+|..|.+.|. +|+++.|.
T Consensus       137 ~~l~~~~v----lVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          137 ITLDGKRI----LVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             CCCTTCEE----EEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCCCCCEE----EEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            34567777    999999999999999999997 89998875

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=94.19  E-value=0.049  Score=40.17  Aligned_cols=38  Identities=16%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~   47 (148)
                      ++...++++    +|+|+|-.|-.++..|.+.| .+|+++.|.
T Consensus       115 ~~~l~~k~~----lvlGaGg~~~aia~~L~~~G~~~v~i~~R~  153 (272)
T 3pwz_A          115 GEPLRNRRV----LLLGAGGAVRGALLPFLQAGPSELVIANRD  153 (272)
T ss_dssp             CCCCTTSEE----EEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCccCCEE----EEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            344567777    99999999999999999999 499999875

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=94.19  E-value=0.036  Score=43.62  Aligned_cols=37  Identities=19%  Similarity=0.091  Sum_probs=32.5

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ....|+++    +|+|.|.+|..+|..|..+|.+|+++++.
T Consensus       216 ~~L~GktV----~ViG~G~IGk~vA~~Lra~Ga~Viv~D~d  252 (435)
T 3gvp_A          216 MMFGGKQV----VVCGYGEVGKGCCAALKAMGSIVYVTEID  252 (435)
T ss_dssp             CCCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             ceecCCEE----EEEeeCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34568888    99999999999999999999999988764

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=94.17  E-value=0.04  Score=45.52  Aligned_cols=37  Identities=22%  Similarity=0.139  Sum_probs=31.6

Q ss_pred             ccC-CCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231         108 TST-NISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       108 ~~t-~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      ++| .+||+|++|++++..+   ...|+.+|.+|+.|+.++
T Consensus       373 le~k~~~gLf~AGqi~g~~G---y~eA~a~G~~AG~naa~~  410 (641)
T 3cp8_A          373 METRPVENLFFAGQINGTSG---YEEAAAQGLMAGINAVRK  410 (641)
T ss_dssp             SBBSSSBTEEECSGGGTBCC---HHHHHHHHHHHHHHHHHH
T ss_pred             ccccCcCCEEEEEeecCCcc---HHHHHHHHHHHHHHHHHH
Confidence            787 5999999999998763   349999999999999765

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.15  E-value=0.051  Score=40.36  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=32.7

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      ++...++++    +|+|+|-+|-.++..|.+.|. +|+++.|.
T Consensus       117 ~~~~~~k~v----lvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          117 RVEIKNNIC----VVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             TCCCTTSEE----EEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCccCCEE----EEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            445567787    999999999999999999997 89999885

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.14  E-value=0.065  Score=39.72  Aligned_cols=38  Identities=21%  Similarity=0.209  Sum_probs=32.2

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      ++...++++    +|+|+|-.|-.++..|.+.|. +|+++.|.
T Consensus       121 ~~~l~~k~v----lvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          121 QVLLKGATI----LLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             TCCCTTCEE----EEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             CCCccCCEE----EEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            344567777    999999999999999999994 99999885

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=94.12  E-value=0.051  Score=42.09  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEE
Q psy5231           3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIH   45 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~   45 (148)
                      |-.+.++.++++    .|+|||..|..++..+.+.|.+|.++.
T Consensus        16 ~~~~~mm~~~~I----~ilGgG~lg~~l~~aa~~lG~~v~~~d   54 (403)
T 3k5i_A           16 YFQGHMWNSRKV----GVLGGGQLGRMLVESANRLNIQVNVLD   54 (403)
T ss_dssp             -----CCSCCEE----EEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             eEeccCCCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            455666677888    999999999999999999999999998

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.07  E-value=0.055  Score=40.91  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=28.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~   48 (148)
                      +|+|||+|.+|.-+|..|+..|. +|+++.+.+
T Consensus        16 kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           16 KISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            45999999999999999999998 899998754

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.06  E-value=0.058  Score=40.80  Aligned_cols=32  Identities=16%  Similarity=0.056  Sum_probs=28.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~   48 (148)
                      +|+|||+|.+|.-+|..|+..|. +|+++.+.+
T Consensus        11 kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           11 KVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            45999999999999999999987 899998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.03  E-value=0.047  Score=42.32  Aligned_cols=35  Identities=14%  Similarity=0.064  Sum_probs=30.6

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .+.+|    +|+|+|.+|..+|..+..+|.+|+++.++.
T Consensus       183 ~~~kV----~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASA----LVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEE----EEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCCEE----EEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34555    999999999999999999999999998754

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.01  E-value=0.058  Score=39.98  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             eEEEEc-CchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIG-GGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|.||| .|.+|..+|..|++.|.+|+++.+.+
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            459999 99999999999999999999998754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.00  E-value=0.07  Score=41.05  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..|++|    +|+|+|.+|..+|..+..+|.+|+++.++
T Consensus       166 l~g~~V----~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~  200 (377)
T 2vhw_A          166 VEPADV----VVIGAGTAGYNAARIANGMGATVTVLDIN  200 (377)
T ss_dssp             BCCCEE----EEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            456666    99999999999999999999999999875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.00  E-value=0.086  Score=36.65  Aligned_cols=30  Identities=17%  Similarity=0.231  Sum_probs=27.9

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+|.|+ |.+|..++..|.+.|.+|+++.|+
T Consensus         3 ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (224)
T 3h2s_A            3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRD   33 (224)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEcCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            599998 999999999999999999999885

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.00  E-value=0.071  Score=40.15  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=33.2

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~   48 (148)
                      ++...++++    +|+|+|-+|-.++..|.+.|. +|+++.|.+
T Consensus       143 ~~~l~gk~~----lVlGAGGaaraia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          143 GFDMRGKTM----VLLGAGGAATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             TCCCTTCEE----EEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCcCCCEE----EEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            445567788    999999999999999999997 899998863

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.98  E-value=0.069  Score=39.40  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=30.4

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++++    +|+|+|-.|--++..|.+.|.+|+++.|..
T Consensus       118 ~k~v----lvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNA----LILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5666    999999999999999999999999998864

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=93.98  E-value=0.058  Score=40.95  Aligned_cols=38  Identities=18%  Similarity=0.144  Sum_probs=33.0

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ....|+++    .|||.|.+|-.+|..|..+|.+|+++.+..
T Consensus       160 ~~l~g~~v----gIIG~G~iG~~vA~~l~~~G~~V~~~dr~~  197 (333)
T 3ba1_A          160 TKFSGKRV----GIIGLGRIGLAVAERAEAFDCPISYFSRSK  197 (333)
T ss_dssp             CCCTTCCE----EEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cccCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            34567777    999999999999999999999999988754

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=93.97  E-value=0.04  Score=41.87  Aligned_cols=31  Identities=29%  Similarity=0.345  Sum_probs=28.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||.|..|.-+|..|++.|.+|+++.|.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            4599999999999999999999999999874

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=93.96  E-value=0.21  Score=36.01  Aligned_cols=35  Identities=17%  Similarity=0.086  Sum_probs=29.6

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..||.+    +|.|| |-+|..+|..|++.|.+|.++.|.
T Consensus         9 l~~k~v----lVTGas~GIG~aia~~la~~G~~V~~~~r~   44 (262)
T 3ksu_A            9 LKNKVI----VIAGGIKNLGALTAKTFALESVNLVLHYHQ   44 (262)
T ss_dssp             CTTCEE----EEETCSSHHHHHHHHHHTTSSCEEEEEESC
T ss_pred             CCCCEE----EEECCCchHHHHHHHHHHHCCCEEEEEecC
Confidence            456777    88876 589999999999999999998764

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.96  E-value=0.057  Score=43.04  Aligned_cols=32  Identities=22%  Similarity=0.205  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|.|||+|..|..+|..|++.|.+|+++.+++
T Consensus         7 kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            45999999999999999999999999998753

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.94  E-value=0.064  Score=41.90  Aligned_cols=31  Identities=13%  Similarity=0.157  Sum_probs=28.3

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|+|+|.+|..+|..+...|.+|+++.+++
T Consensus       193 V~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          193 IFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             EEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3999999999999999999999999998754

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.93  E-value=0.05  Score=42.60  Aligned_cols=31  Identities=19%  Similarity=0.088  Sum_probs=28.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||.|.+|.-+|..|++.|.+|+++.+.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4599999999999999999999999999774

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=93.92  E-value=0.039  Score=43.90  Aligned_cols=49  Identities=24%  Similarity=0.192  Sum_probs=37.6

Q ss_pred             CCeEEecCCCCccccc------CCCCCeEEecccCccc------cchhHHHHHHHHHHHHHHHHhh
Q psy5231          94 DGYIKTKLNKKTGYTS------TNISGVFCRWRCTRLY------FIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        94 ~g~i~vd~~~~~~~~~------t~~~~vya~GD~~~~~------~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      -|.+.+|+.     .+      +.+||+||+|.+++..      .-..+..|+-.|++|+.++.++
T Consensus       449 ~GGl~~d~~-----~~Vl~~~g~~I~GLyAaGe~~gg~~g~~y~~G~sl~~~~~fGr~Ag~~aa~~  509 (510)
T 4at0_A          449 LGGLRTTVN-----SEVLHVSGEPIPGLFAAGRCTSGVCAGGYASGTSLGDGSFYGRRAGISAAKQ  509 (510)
T ss_dssp             CCEECBCTT-----CEEEBTTSSEEEEEEECGGGBCCSCSSSCCTTHHHHHHHHHHHHHHHHHHCC
T ss_pred             CcCeeECCC-----CceECCCCCCcCCeeeceecccCCCcCCCCcHHhHHHHHHHHHHHHHHHHhc
Confidence            477888887     66      7899999999987532      0125678899999999998753

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=93.91  E-value=0.045  Score=41.88  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-------CeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-------KKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-------~~Vtlv~~~~~   49 (148)
                      +|.|||+|..|.-+|..|++.|       .+|+++.|.+.
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            3499999999999999999988       89999988654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.91  E-value=0.15  Score=38.06  Aligned_cols=31  Identities=13%  Similarity=0.054  Sum_probs=28.6

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|.|+ |.+|-.++..|.+.|.+|+++.|..
T Consensus        13 IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A           13 VLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             EEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            399998 9999999999999999999999965

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.91  E-value=0.17  Score=36.37  Aligned_cols=36  Identities=17%  Similarity=0.080  Sum_probs=30.2

Q ss_pred             hcCCcccceEEEEcC-ch--HHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGG-GN--TAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~--~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ..||.+    +|.|+ |.  +|.++|..|++.|.+|.++.|.+
T Consensus         5 l~~k~v----lVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            5 LEGRNI----VVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CTTCEE----EEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCEE----EEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            457777    89987 45  99999999999999999998753

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.89  E-value=0.068  Score=41.17  Aligned_cols=35  Identities=14%  Similarity=0.060  Sum_probs=30.9

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .+++|    +|+|+|.+|..++..+..+|.+|+++.+++
T Consensus       171 ~g~~V----~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARV----LVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            56666    999999999999999999999999988754

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=93.89  E-value=0.076  Score=39.70  Aligned_cols=32  Identities=31%  Similarity=0.445  Sum_probs=28.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~   48 (148)
                      +|+|||+|.+|.-+|..|+..  +.+|+++.+.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            469999999999999999984  79999998864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.89  E-value=0.076  Score=37.42  Aligned_cols=30  Identities=30%  Similarity=0.309  Sum_probs=27.6

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |.|||.|..|..+|..|.+.|.+|+++.|+
T Consensus        31 I~iiG~G~~G~~la~~l~~~g~~V~~~~r~   60 (215)
T 2vns_A           31 VGILGSGDFARSLATRLVGSGFKVVVGSRN   60 (215)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            499999999999999999999999998874

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=93.86  E-value=0.14  Score=36.81  Aligned_cols=41  Identities=15%  Similarity=0.012  Sum_probs=31.8

Q ss_pred             hhhhhhhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           3 YEFGILALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +..-....||.+    +|.|| |-+|..+|..|++.|.+|.++.|.
T Consensus         4 ~~~~~~l~~k~v----lVTGas~gIG~~ia~~l~~~G~~V~~~~r~   45 (256)
T 3gaf_A            4 YESPFHLNDAVA----IVTGAAAGIGRAIAGTFAKAGASVVVTDLK   45 (256)
T ss_dssp             --CTTCCTTCEE----EECSCSSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CcCCCCCCCCEE----EEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            333445667777    78876 689999999999999999999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=93.84  E-value=0.072  Score=39.48  Aligned_cols=37  Identities=19%  Similarity=0.162  Sum_probs=31.5

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      ....++++    +|+|+|-+|..++..|++.|. +|+++.|.
T Consensus       123 ~~l~~k~v----lVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          123 PNAKLDSV----VQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             TTCCCSEE----EEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCcCCCEE----EEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            34567777    999999999999999999997 79998875

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=93.83  E-value=0.077  Score=39.03  Aligned_cols=37  Identities=22%  Similarity=0.150  Sum_probs=32.0

Q ss_pred             hhhcCCcccceEEEEc-CchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIG-GGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ....||++    +|+| +|.+|..+|..|++.|.+|+++.|.
T Consensus       115 ~~l~gk~v----lVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          115 GSVKGKKA----VVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             SCCTTCEE----EEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEE----EEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            33567777    9999 8999999999999999999998875

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=93.83  E-value=0.043  Score=41.40  Aligned_cols=33  Identities=24%  Similarity=0.214  Sum_probs=29.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-------CeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-------KKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-------~~Vtlv~~~~~   49 (148)
                      +|+|||+|..|.-+|..|++.|       .+|+++.|++.
T Consensus        10 kI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A           10 KVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            3599999999999999999988       89999988654

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=93.80  E-value=0.18  Score=37.14  Aligned_cols=32  Identities=13%  Similarity=0.141  Sum_probs=28.7

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      |+|.|+ |.+|-.++..|.+.|.+|+++.|...
T Consensus        14 ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           14 ILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             EEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             EEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            499996 99999999999999999999998753

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=93.79  E-value=0.072  Score=40.35  Aligned_cols=38  Identities=21%  Similarity=0.119  Sum_probs=33.0

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ....|+++    .|||.|.+|..+|..|..+|.+|+++.+..
T Consensus       142 ~~l~g~~v----gIIG~G~iG~~vA~~l~~~G~~V~~~d~~~  179 (333)
T 2d0i_A          142 ESLYGKKV----GILGMGAIGKAIARRLIPFGVKLYYWSRHR  179 (333)
T ss_dssp             CCSTTCEE----EEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             CCCCcCEE----EEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            34567777    999999999999999999999999988754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.78  E-value=0.059  Score=40.36  Aligned_cols=31  Identities=16%  Similarity=0.217  Sum_probs=28.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||.|..|..+|..|++.|.+|+++.|.
T Consensus        33 ~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   63 (320)
T 4dll_A           33 KITFLGTGSMGLPMARRLCEAGYALQVWNRT   63 (320)
T ss_dssp             EEEEECCTTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECccHHHHHHHHHHHhCCCeEEEEcCC
Confidence            4599999999999999999999999999875

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=93.78  E-value=0.083  Score=39.95  Aligned_cols=39  Identities=13%  Similarity=0.032  Sum_probs=34.1

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +....|+++    .|||-|.+|-.+|..|..+|.+|+.+.|..
T Consensus       132 ~~~l~gktv----GIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  170 (324)
T 3evt_A          132 TSTLTGQQL----LIYGTGQIGQSLAAKASALGMHVIGVNTTG  170 (324)
T ss_dssp             CCCSTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CccccCCeE----EEECcCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            445667777    999999999999999999999999998854

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=93.77  E-value=0.41  Score=34.47  Aligned_cols=26  Identities=19%  Similarity=0.112  Sum_probs=23.4

Q ss_pred             chHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          24 GNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        24 G~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      |-.|..+|..+++.|.+|+++.+...
T Consensus        29 G~mG~aiA~~~~~~Ga~V~lv~~~~~   54 (232)
T 2gk4_A           29 GHLGKIITETLLSAGYEVCLITTKRA   54 (232)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            47999999999999999999998644

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.76  E-value=0.063  Score=41.73  Aligned_cols=35  Identities=17%  Similarity=0.129  Sum_probs=30.6

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .+++|    +|+|+|.+|..++..+..+|.+|+++.++.
T Consensus       171 ~g~~V----~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          171 PPAKV----MVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            45666    999999999999999999999999998753

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.76  E-value=0.078  Score=39.55  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=28.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC--eEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK--KVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~   47 (148)
                      +|+|||+|.+|.-+|..|+..|.  +|+++.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~   34 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD   34 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            46999999999999999999888  99999874

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=93.75  E-value=0.11  Score=37.43  Aligned_cols=37  Identities=16%  Similarity=0.117  Sum_probs=31.8

Q ss_pred             hcCCcccceEEEEcC-----------------chHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           9 ALIKPVIIFTDVIGG-----------------GNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-----------------G~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ..||.+    +|-||                 |-+|..+|..+++.|.+|+++.+...
T Consensus         6 l~gk~v----lVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~   59 (226)
T 1u7z_A            6 LKHLNI----MITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS   59 (226)
T ss_dssp             TTTCEE----EEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred             CCCCEE----EEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            467777    88888                 78999999999999999999987543

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=93.74  E-value=0.053  Score=40.07  Aligned_cols=30  Identities=23%  Similarity=0.132  Sum_probs=27.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-----C-CeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-----A-KKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-----g-~~Vtlv~~   46 (148)
                      +|.|||+|.+|.-+|..|++.     | .+|+++.|
T Consensus        10 ~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A           10 KIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            359999999999999999998     8 99999875

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.73  E-value=0.34  Score=35.17  Aligned_cols=35  Identities=9%  Similarity=-0.009  Sum_probs=29.7

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..||.+    +|.|| |-+|.++|..|++.|.+|.++.|.
T Consensus        13 l~gk~~----lVTGas~gIG~a~a~~la~~G~~V~~~~r~   48 (280)
T 3pgx_A           13 LQGRVA----FITGAARGQGRSHAVRLAAEGADIIACDIC   48 (280)
T ss_dssp             TTTCEE----EEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCCEE----EEECCCcHHHHHHHHHHHHCCCEEEEEecc
Confidence            456776    88876 589999999999999999999874

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=93.73  E-value=0.11  Score=36.72  Aligned_cols=33  Identities=15%  Similarity=0.175  Sum_probs=28.8

Q ss_pred             ceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |.++|.|+ |.+|..+|..|++.|.+|+++.|..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~   35 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQ   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            34589987 8999999999999999999998864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.70  E-value=0.07  Score=37.27  Aligned_cols=32  Identities=22%  Similarity=0.076  Sum_probs=28.5

Q ss_pred             eEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|.|+ |.+|-.++..|.+.|.+|+++.|.+
T Consensus         6 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             EEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             EEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            4599995 9999999999999999999998863

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=93.69  E-value=0.073  Score=38.34  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=27.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~   47 (148)
                      +|.|||.|..|.-+|..|.+.| .+|+++.|+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCC
Confidence            4599999999999999999999 999998764

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=93.68  E-value=0.11  Score=36.96  Aligned_cols=41  Identities=17%  Similarity=0.136  Sum_probs=32.6

Q ss_pred             hhhhhhhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           3 YEFGILALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +..-....+|.+    +|.|| |.+|.++|..|++.|.+|+++.|.
T Consensus         3 ~~~~~~~~~k~v----lITGasggiG~~la~~l~~~G~~V~~~~r~   44 (254)
T 2wsb_A            3 YRTVFRLDGACA----AVTGAGSGIGLEICRAFAASGARLILIDRE   44 (254)
T ss_dssp             TTTTTCCTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccccCCCCCEE----EEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            333344567777    88876 699999999999999999999875

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=93.66  E-value=0.07  Score=41.06  Aligned_cols=35  Identities=23%  Similarity=0.071  Sum_probs=30.7

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      ...|++|    +|+|.|.+|..+|..|.+.|.+|++..+
T Consensus       170 ~L~GktV----~V~G~G~VG~~~A~~L~~~GakVvv~D~  204 (364)
T 1leh_A          170 SLEGLAV----SVQGLGNVAKALCKKLNTEGAKLVVTDV  204 (364)
T ss_dssp             CCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCcCEE----EEECchHHHHHHHHHHHHCCCEEEEEcC
Confidence            4678888    9999999999999999999999886543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=93.65  E-value=0.32  Score=35.23  Aligned_cols=36  Identities=6%  Similarity=0.013  Sum_probs=30.1

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ..||.+    +|.|| |-+|.++|..|++.|.+|.++.|..
T Consensus         9 l~~k~~----lVTGas~GIG~a~a~~la~~G~~V~~~~r~~   45 (277)
T 3tsc_A            9 LEGRVA----FITGAARGQGRAHAVRMAAEGADIIAVDIAG   45 (277)
T ss_dssp             TTTCEE----EEESTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cCCCEE----EEECCccHHHHHHHHHHHHcCCEEEEEeccc
Confidence            456666    88876 5899999999999999999998743

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=93.65  E-value=0.064  Score=42.93  Aligned_cols=36  Identities=19%  Similarity=0.119  Sum_probs=31.8

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ...|++|    +|+|.|.+|..+|..+..+|.+|+++++.
T Consensus       271 ~l~GktV----~IiG~G~IG~~~A~~lka~Ga~Viv~d~~  306 (494)
T 3ce6_A          271 LIGGKKV----LICGYGDVGKGCAEAMKGQGARVSVTEID  306 (494)
T ss_dssp             CCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCcCEE----EEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4567777    99999999999999999999999988764

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=93.63  E-value=0.07  Score=39.50  Aligned_cols=35  Identities=14%  Similarity=0.130  Sum_probs=31.3

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..|+++    +|||.| .+|.-+|..|.+.|..||+++++
T Consensus       148 l~Gk~v----vVvG~s~iVG~plA~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          148 YHENTV----TIVNRSPVVGRPLSMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             CCSCEE----EEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cCCCEE----EEEcCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            678888    999977 58999999999999999999875

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=93.62  E-value=0.09  Score=39.60  Aligned_cols=39  Identities=18%  Similarity=0.104  Sum_probs=33.9

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ....|+++    .|||-|.+|-.+|..|..+|.+|+.+.|..+
T Consensus       135 ~~l~g~tv----GIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~  173 (315)
T 3pp8_A          135 YTREEFSV----GIMGAGVLGAKVAESLQAWGFPLRCWSRSRK  173 (315)
T ss_dssp             CCSTTCCE----EEECCSHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred             CCcCCCEE----EEEeeCHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            34567777    9999999999999999999999999988644

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=93.62  E-value=0.088  Score=38.30  Aligned_cols=31  Identities=19%  Similarity=0.076  Sum_probs=27.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||.|.+|..+|..|.+.|.+|+++.|.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4599999999999999999999999998764

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=93.61  E-value=0.32  Score=34.56  Aligned_cols=35  Identities=23%  Similarity=0.049  Sum_probs=29.9

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +.+|.+    +|.|| |-+|.++|..|++.|.+|.++.|.
T Consensus         7 ~~~k~v----lITGas~giG~~~a~~l~~~G~~V~~~~r~   42 (253)
T 3qiv_A            7 FENKVG----IVTGSGGGIGQAYAEALAREGAAVVVADIN   42 (253)
T ss_dssp             TTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCEE----EEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            456776    88886 689999999999999999999875

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=93.57  E-value=0.08  Score=39.63  Aligned_cols=38  Identities=18%  Similarity=0.156  Sum_probs=32.9

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ....|+++    .|||.|.+|-.+|..|..+|.+|+.+.+..
T Consensus       138 ~~l~g~~v----gIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (307)
T 1wwk_A          138 IELEGKTI----GIIGFGRIGYQVAKIANALGMNILLYDPYP  175 (307)
T ss_dssp             CCCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccCCceE----EEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            45567777    999999999999999999999999988754

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.55  E-value=0.039  Score=39.05  Aligned_cols=30  Identities=17%  Similarity=0.181  Sum_probs=26.7

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEE-EEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTL-IHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtl-v~~~   47 (148)
                      |.|||.|..|..+|..|.+.|.+|++ +.|.
T Consensus        26 I~IIG~G~mG~~la~~l~~~g~~V~~v~~r~   56 (220)
T 4huj_A           26 YAIIGAGAIGSALAERFTAAQIPAIIANSRG   56 (220)
T ss_dssp             EEEEECHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            49999999999999999999999998 5553

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.54  E-value=0.075  Score=41.23  Aligned_cols=30  Identities=23%  Similarity=0.273  Sum_probs=27.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||.|.+|.-+|..|++ |.+|+++.+.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~   31 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDIL   31 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECC
Confidence            45999999999999999999 9999999874

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=93.51  E-value=0.082  Score=39.68  Aligned_cols=39  Identities=15%  Similarity=0.212  Sum_probs=33.4

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +....|+++    .|||.|.+|-.+|..|..+|.+|+.+.+..
T Consensus       137 ~~~l~g~~v----gIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (313)
T 2ekl_A          137 GLELAGKTI----GIVGFGRIGTKVGIIANAMGMKVLAYDILD  175 (313)
T ss_dssp             CCCCTTCEE----EEESCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCCCCEE----EEEeeCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            345667777    999999999999999999999999887754

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=93.50  E-value=0.096  Score=38.34  Aligned_cols=35  Identities=20%  Similarity=0.175  Sum_probs=30.5

Q ss_pred             CCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          11 IKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        11 gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ++++    +|.|| |.+|..++..|.+.|.+|+++.|...
T Consensus         7 ~~~v----lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRI----LITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEE----EEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeE----EEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            4555    99998 99999999999999999999988543

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=93.49  E-value=0.073  Score=41.93  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=33.3

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +....|+++    +|+|-|.+|..+|..|..+|.+|+++++.
T Consensus       206 g~~L~GktV----gIiG~G~IG~~vA~~Lka~Ga~Viv~D~~  243 (436)
T 3h9u_A          206 DVMIAGKTA----CVCGYGDVGKGCAAALRGFGARVVVTEVD  243 (436)
T ss_dssp             CCCCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCcccCCEE----EEEeeCHHHHHHHHHHHHCCCEEEEECCC
Confidence            445668888    99999999999999999999999988764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.49  E-value=0.31  Score=35.74  Aligned_cols=36  Identities=14%  Similarity=0.162  Sum_probs=30.2

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ..||.+    +|.|| |-+|..+|..|++.|.+|.++.|+.
T Consensus        45 l~gk~v----lVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           45 LKGKNV----LITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             TTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEE----EEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            456666    88876 6899999999999999999998753

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.46  E-value=0.097  Score=42.18  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=30.3

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ++++|+|+|..|..+|..|.+.|.+|+++++.++
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChH
Confidence            3459999999999999999999999999997643

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=93.45  E-value=0.081  Score=39.42  Aligned_cols=31  Identities=26%  Similarity=0.229  Sum_probs=28.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~   47 (148)
                      +|+|||+|.+|.-+|..|+..|  .+|+++.+.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~   35 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            4699999999999999999988  799999875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=93.45  E-value=0.099  Score=38.09  Aligned_cols=32  Identities=19%  Similarity=-0.040  Sum_probs=27.7

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCC--eEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAK--KVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~   47 (148)
                      ++|.|||.|.+|.-+|..|.+.|.  +|+++.+.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   35 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            356999999999999999999988  88888664

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=93.43  E-value=0.075  Score=42.54  Aligned_cols=37  Identities=19%  Similarity=0.125  Sum_probs=32.9

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ....|+++    .|||.|.+|-.+|..+..+|.+|+++++.
T Consensus       273 ~~L~GktV----gIIG~G~IG~~vA~~l~~~G~~V~v~d~~  309 (494)
T 3d64_A          273 VMIAGKIA----VVAGYGDVGKGCAQSLRGLGATVWVTEID  309 (494)
T ss_dssp             CCCTTCEE----EEECCSHHHHHHHHHHHTTTCEEEEECSC
T ss_pred             cccCCCEE----EEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34677888    99999999999999999999999999875

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=93.41  E-value=0.088  Score=39.51  Aligned_cols=39  Identities=15%  Similarity=0.106  Sum_probs=33.2

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +....|+++    .|||.|.+|-.+|..|..+|.+|+.+.+..
T Consensus       139 ~~~l~g~~v----gIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  177 (311)
T 2cuk_A          139 GLDLQGLTL----GLVGMGRIGQAVAKRALAFGMRVVYHARTP  177 (311)
T ss_dssp             BCCCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CcCCCCCEE----EEEEECHHHHHHHHHHHHCCCEEEEECCCC
Confidence            344567777    999999999999999999999999988754

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=93.41  E-value=0.089  Score=39.80  Aligned_cols=38  Identities=18%  Similarity=0.022  Sum_probs=32.9

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ....|+++    .|||-|.+|-.+|..+..+|.+|+.+.+..
T Consensus       142 ~~l~g~~v----gIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  179 (331)
T 1xdw_A          142 KEVRNCTV----GVVGLGRIGRVAAQIFHGMGATVIGEDVFE  179 (331)
T ss_dssp             CCGGGSEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCCCCEE----EEECcCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            34567777    999999999999999999999999988754

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=93.40  E-value=0.066  Score=44.30  Aligned_cols=37  Identities=24%  Similarity=0.239  Sum_probs=31.3

Q ss_pred             ccCC-CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231         108 TSTN-ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       108 ~~t~-~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      ++|. +||+|.+|.+++..++   ..|+++|.+|+.|+.++
T Consensus       379 le~k~~~gLf~AGqinGttGY---eEAaaqGl~AG~nAa~~  416 (651)
T 3ces_A          379 LESKFIQGLFFAGQINGTTGY---EEAAAQGLLAGLNAARL  416 (651)
T ss_dssp             SBBSSSBTEEECSGGGTCCCH---HHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEEecCCcCh---HHHHHHHHHHHHHHHHH
Confidence            6764 8999999999887643   58999999999999875

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.38  E-value=0.095  Score=39.92  Aligned_cols=34  Identities=15%  Similarity=-0.023  Sum_probs=29.9

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..++|.|||.|.+|--+|..|.+.|.+|+++.++
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~   40 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRS   40 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3445699999999999999999999999999875

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.37  E-value=0.2  Score=36.21  Aligned_cols=35  Identities=26%  Similarity=0.147  Sum_probs=29.6

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +.||.+    +|.|| |-+|.++|..|++.|.+|.++.|+
T Consensus        27 l~~k~v----lITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (271)
T 4iin_A           27 FTGKNV----LITGASKGIGAEIAKTLASMGLKVWINYRS   62 (271)
T ss_dssp             CSCCEE----EETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCEE----EEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            456666    78876 689999999999999999999885

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=93.36  E-value=0.26  Score=35.87  Aligned_cols=32  Identities=9%  Similarity=0.023  Sum_probs=28.7

Q ss_pred             eEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|.|+ |.+|-.++..|.+.|.+|+++.|..
T Consensus         4 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             EEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            3499997 9999999999999999999999864

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=93.33  E-value=0.088  Score=39.17  Aligned_cols=30  Identities=30%  Similarity=0.338  Sum_probs=28.0

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |.|||.|..|..+|..|.+.|.+|+++.|+
T Consensus        12 IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~   41 (306)
T 3l6d_A           12 VSVIGLGAMGTIMAQVLLKQGKRVAIWNRS   41 (306)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            499999999999999999999999999875

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=93.29  E-value=0.098  Score=39.87  Aligned_cols=39  Identities=13%  Similarity=0.001  Sum_probs=33.1

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHh-hcCCeEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLS-NIAKKVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~-~~g~~Vtlv~~~~   48 (148)
                      +....|+++    .|||.|.+|-.+|..+. .+|.+|+++.+..
T Consensus       158 ~~~l~g~~v----gIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~  197 (348)
T 2w2k_A          158 AHNPRGHVL----GAVGLGAIQKEIARKAVHGLGMKLVYYDVAP  197 (348)
T ss_dssp             CCCSTTCEE----EEECCSHHHHHHHHHHHHTTCCEEEEECSSC
T ss_pred             CcCCCCCEE----EEEEECHHHHHHHHHHHHhcCCEEEEECCCC
Confidence            344567777    99999999999999999 9999999887754

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=93.29  E-value=0.14  Score=39.75  Aligned_cols=35  Identities=17%  Similarity=0.005  Sum_probs=31.1

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      .+++|+|+|.+|..+|..++..|.+|+++..++.+
T Consensus       205 ~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~  239 (386)
T 2we8_A          205 PRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF  239 (386)
T ss_dssp             CEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh
Confidence            35699999999999999999999999999876554

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.27  E-value=0.089  Score=39.42  Aligned_cols=32  Identities=19%  Similarity=0.027  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~   48 (148)
                      +|.|||.|..|..+|..|++.| .+|+++.|.+
T Consensus        26 ~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           26 TIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             eEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4599999999999999999999 9999998864

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=93.27  E-value=0.072  Score=38.83  Aligned_cols=30  Identities=20%  Similarity=0.081  Sum_probs=27.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||.|..|..+|..|.+ |.+|+++.|.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~   32 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRT   32 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSS
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCC
Confidence            45999999999999999999 9999998774

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.25  E-value=0.11  Score=39.56  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=28.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|+|+|.+|..++..+...|.+|+++.|+
T Consensus       169 ~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~  199 (361)
T 1pjc_A          169 KVVILGGGVVGTEAAKMAVGLGAQVQIFDIN  199 (361)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            3499999999999999999999999999875

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.24  E-value=0.11  Score=38.13  Aligned_cols=31  Identities=13%  Similarity=0.232  Sum_probs=28.1

Q ss_pred             eEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||. |..|..+|..|.+.|.+|+++.|+
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~   44 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHDSAHHLAAIEIA   44 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            4599999 999999999999999999988764

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=93.18  E-value=0.094  Score=39.95  Aligned_cols=39  Identities=21%  Similarity=0.154  Sum_probs=33.7

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |....|+++    .|||-|.+|-.+|..+..+|.+|+.+.|..
T Consensus       166 ~~~l~gkti----GIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  204 (340)
T 4dgs_A          166 GHSPKGKRI----GVLGLGQIGRALASRAEAFGMSVRYWNRST  204 (340)
T ss_dssp             CCCCTTCEE----EEECCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cccccCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            345667777    999999999999999999999999888754

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=93.16  E-value=0.1  Score=39.51  Aligned_cols=38  Identities=16%  Similarity=0.097  Sum_probs=33.1

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ....|+++    .|||-|.+|-.+|..+..+|.+|+.+.+..
T Consensus       141 ~~l~g~~v----gIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  178 (333)
T 1dxy_A          141 KELGQQTV----GVMGTGHIGQVAIKLFKGFGAKVIAYDPYP  178 (333)
T ss_dssp             CCGGGSEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCCCCEE----EEECcCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            35567777    999999999999999999999999988754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=93.14  E-value=0.12  Score=38.88  Aligned_cols=32  Identities=16%  Similarity=0.077  Sum_probs=27.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~   48 (148)
                      +|+|||+|.+|.-+|..|+..|. +|+++...+
T Consensus         6 kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            6 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            45999999999999999999887 888887653

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=93.12  E-value=0.27  Score=36.05  Aligned_cols=32  Identities=25%  Similarity=0.292  Sum_probs=28.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC---eEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK---KVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~   48 (148)
                      +|.|||+|..|.-+|..|.+.|.   +|+++.|++
T Consensus         5 ~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            5 NITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            34999999999999999999998   899987753

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.12  E-value=0.085  Score=39.18  Aligned_cols=32  Identities=19%  Similarity=0.165  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|.|||.|..|..+|..|.+.|.+|+++.|.+
T Consensus        32 ~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            35999999999999999999999999998753

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=93.11  E-value=0.15  Score=37.90  Aligned_cols=36  Identities=11%  Similarity=0.037  Sum_probs=31.0

Q ss_pred             hhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+.++++    +|.|| |.+|..++..|.+.|.+|+++.|.
T Consensus        17 ~~~~~~v----lVTGasG~iG~~l~~~L~~~g~~V~~~~r~   53 (330)
T 2pzm_A           17 RGSHMRI----LITGGAGCLGSNLIEHWLPQGHEILVIDNF   53 (330)
T ss_dssp             TTTCCEE----EEETTTSHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             cCCCCEE----EEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3456666    99987 999999999999999999999884

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=93.09  E-value=0.11  Score=39.38  Aligned_cols=38  Identities=16%  Similarity=0.049  Sum_probs=32.8

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ....|+++    .|||.|.+|-.+|..+..+|.+|+.+.+..
T Consensus       142 ~~l~g~~v----gIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  179 (333)
T 1j4a_A          142 REVRDQVV----GVVGTGHIGQVFMQIMEGFGAKVITYDIFR  179 (333)
T ss_dssp             CCGGGSEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCCCCEE----EEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            34567777    999999999999999999999999988754

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=93.07  E-value=0.12  Score=38.28  Aligned_cols=34  Identities=21%  Similarity=0.036  Sum_probs=29.8

Q ss_pred             CCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          11 IKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        11 gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++++    +|.|| |.+|..++..|.+.|.+|+++.|..
T Consensus         3 ~~~v----lVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   37 (345)
T 2z1m_A            3 GKRA----LITGIRGQDGAYLAKLLLEKGYEVYGADRRS   37 (345)
T ss_dssp             CCEE----EEETTTSHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred             CCEE----EEECCCChHHHHHHHHHHHCCCEEEEEECCC
Confidence            4555    99998 9999999999999999999998854

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=93.06  E-value=0.12  Score=37.44  Aligned_cols=31  Identities=10%  Similarity=0.047  Sum_probs=27.9

Q ss_pred             eEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|.|+ |.+|-.++..|.+.|.+|+.+.|.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK   38 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence            4599996 999999999999999999999884

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.06  E-value=0.28  Score=35.60  Aligned_cols=34  Identities=24%  Similarity=0.181  Sum_probs=28.5

Q ss_pred             cCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          10 LIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        10 ~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+|.+    +|.|| |-+|..+|..|++.|.+|.++.|+
T Consensus         3 ~~k~~----lVTGas~GIG~aia~~la~~G~~V~~~~r~   37 (264)
T 3tfo_A            3 MDKVI----LITGASGGIGEGIARELGVAGAKILLGARR   37 (264)
T ss_dssp             TTCEE----EESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEE----EEeCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            45666    77776 589999999999999999999875

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=93.05  E-value=0.082  Score=42.18  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=32.6

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ...|+++    .|||.|.+|-.+|..+..+|.+|+++++.
T Consensus       254 ~l~GktV----gIIG~G~IG~~vA~~l~~~G~~Viv~d~~  289 (479)
T 1v8b_A          254 LISGKIV----VICGYGDVGKGCASSMKGLGARVYITEID  289 (479)
T ss_dssp             CCTTSEE----EEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             ccCCCEE----EEEeeCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            5677888    99999999999999999999999999875

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=93.01  E-value=0.43  Score=33.87  Aligned_cols=35  Identities=17%  Similarity=0.159  Sum_probs=29.8

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..+|.+    +|.|| |.+|..+|..|++.|.+|+++.|.
T Consensus        11 l~~k~v----lItGasggiG~~la~~l~~~G~~V~~~~r~   46 (260)
T 3awd_A           11 LDNRVA----IVTGGAQNIGLACVTALAEAGARVIIADLD   46 (260)
T ss_dssp             CTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            456666    88876 799999999999999999999875

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.00  E-value=0.37  Score=35.02  Aligned_cols=36  Identities=17%  Similarity=0.038  Sum_probs=27.9

Q ss_pred             hhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +..+|.+    +|.|| |-+|..+|..|++.|.+|.++.|.
T Consensus        21 m~~~k~~----lVTGas~GIG~aia~~la~~G~~V~~~~r~   57 (279)
T 3sju_A           21 MSRPQTA----FVTGVSSGIGLAVARTLAARGIAVYGCARD   57 (279)
T ss_dssp             ----CEE----EEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4456666    88886 589999999999999999998875

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=92.99  E-value=0.079  Score=40.83  Aligned_cols=30  Identities=23%  Similarity=0.182  Sum_probs=26.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhc-CCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~   46 (148)
                      +|+|||+|.+|.-+|..|++. |.+|+++.+
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~~   34 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLTL   34 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEECC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            459999999999999999884 999999973

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=92.99  E-value=0.16  Score=35.30  Aligned_cols=31  Identities=23%  Similarity=0.261  Sum_probs=27.7

Q ss_pred             EEEEcC-chHHHHHHHHHh-hcCCeEEEEEeCC
Q psy5231          18 TDVIGG-GNTAVEEALYLS-NIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~-~~g~~Vtlv~~~~   48 (148)
                      ++|.|+ |.+|..++..|. +.|.+|+++.|++
T Consensus         8 vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~   40 (221)
T 3r6d_A            8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQL   40 (221)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence            499995 999999999999 8999999998863

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=92.98  E-value=0.094  Score=37.77  Aligned_cols=35  Identities=17%  Similarity=-0.029  Sum_probs=30.4

Q ss_pred             hcCCcccceEEEEcC-c-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-G-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..+|.+    +|.|| | -+|.++|..|++.|.+|+++.|.
T Consensus        20 l~~k~v----lITGasg~GIG~~~a~~l~~~G~~V~~~~r~   56 (266)
T 3o38_A           20 LKGKVV----LVTAAAGTGIGSTTARRALLEGADVVISDYH   56 (266)
T ss_dssp             TTTCEE----EESSCSSSSHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEECCCCCchHHHHHHHHHHCCCEEEEecCC
Confidence            457777    99998 6 59999999999999999999875

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=92.95  E-value=0.12  Score=39.00  Aligned_cols=39  Identities=13%  Similarity=0.072  Sum_probs=33.3

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe-CC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR-NE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~   48 (148)
                      +....|+++    .|||-|.+|-.+|..|..+|.+|+.+.+ ..
T Consensus       141 ~~~l~g~~v----gIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~  180 (320)
T 1gdh_A          141 GEKLDNKTL----GIYGFGSIGQALAKRAQGFDMDIDYFDTHRA  180 (320)
T ss_dssp             BCCCTTCEE----EEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             CcCCCCCEE----EEECcCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            345567777    9999999999999999999999999887 54

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=92.93  E-value=0.089  Score=38.56  Aligned_cols=31  Identities=19%  Similarity=0.053  Sum_probs=28.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||.|..|..+|..|.+.|.+|+++.|.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~   32 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVF   32 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3599999999999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	7e-14
d1trba2	126	c.3.1.5 (A:119-244) Thioredoxin reductase {Escheri	4e-13
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	7e-09
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	2e-07
d2gv8a2	107	c.3.1.5 (A:181-287) Flavin-dependent monoxygenase	1e-06
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	2e-05
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	1e-04
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	6e-04
d1fl2a2	126	c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase	8e-04
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	0.001
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	0.003
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.003

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 63.3 bits (153), Expect = 7e-14
 Identities = 35/180 (19%), Positives = 57/180 (31%), Gaps = 53/180 (29%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHR------------------------------NEK 49
           ++G G      A+Y +    +  LI                                   
Sbjct: 10  ILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMH 69

Query: 50  LRCEKILIDRLMQKVNEGKIDIKLKHIVH--------------------KIIGNNTVTGQ 89
               K   + +   +N+  +  +   +                               GQ
Sbjct: 70  EHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEGQ 129

Query: 90  LEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
           LE+ +GYIK +       T T+I GVF         +  +Q + + G+GCMAALDA+RYL
Sbjct: 130 LELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY--RQAITSAGTGCMAALDAERYL 187

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 126

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 60.1 bits (145), Expect = 4e-13
 Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 8/98 (8%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGNTAVEEALYLSNIA +V LIHR +  R EKILI RLM KV  G I +     + +
Sbjct: 32  VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 91

Query: 80  IIGNNTVTGQLEMNDGYIKTKLNKKTGYTST-NISGVF 116
           + G+       +M    ++ +  + +    + +++G+F
Sbjct: 92  VTGD-------QMGVTGVRLRDTQNSDNIESLDVAGLF 122

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.9 bits (118), Expect = 7e-09
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 44  IHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNTVTGQLEMND-GYIKTKLN 102
           + + +       L       + +  I                + G +E++  GY+ TK  
Sbjct: 89  VTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTK-- 146

Query: 103 KKTGYTSTNISGVFCRWRCTRLYFIDKQ-LLALGSGCMAALDAQRYL 148
              G T T++ GVF         +  +Q + A G+GCMAALDA+ YL
Sbjct: 147 --PGTTQTSVPGVFAAGDVQDKKY--RQAITAAGTGCMAALDAEHYL 189

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 45.5 bits (106), Expect = 2e-07
 Identities = 23/174 (13%), Positives = 41/174 (23%), Gaps = 46/174 (26%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEK------------LRCEKILIDRLMQKVNEG 67
           ++G G      A+Y +    +  L+                 +   K    +L   +   
Sbjct: 6   IVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVH 65

Query: 68  KIDIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKT---------------------- 105
             +  +  I  +                                                
Sbjct: 66  VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAV 125

Query: 106 -----------GYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
                          TN+ GVF    CT + +    ++A G G  A+L A  YL
Sbjct: 126 ERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQI-IIATGEGAKASLSAFDYL 178

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 42.3 bits (99), Expect = 1e-06
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRL--MQKVNEGKIDIKLK 74
          V+GG ++A +   +L+ +AK             +   + ++  + K +    +I LK
Sbjct: 37 VVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIYLK 93

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 40.6 bits (93), Expect = 2e-05
 Identities = 3/32 (9%), Positives = 11/32 (34%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51
           +     T    A  +     ++ + ++ E + 
Sbjct: 185 IADATFTGHRVAREIEEANPQIAIPYKRETIA 216

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 37.0 bits (85), Expect = 1e-04
 Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 6   GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK--LRCEKILIDRLMQK 63
               + +   I   ++G G  AVE    +  +     +  R  +   + ++ +I+ L   
Sbjct: 15  EFFNIKESKKIG--IVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLEND 72

Query: 64  VNEGKIDIKLKHIVHKIIGNNTVTGQLEMNDG 95
           + +  I+I     V +I   +     + ++DG
Sbjct: 73  MKKNNINIVTFADVVEIKKVSDKNLSIHLSDG 104

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (81), Expect = 6e-04
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL-RCEKILIDRLMQKVNEGKIDIKLKHIVH 78
          V+G    A+E A +L+ I   VT++ R+  L   ++ + +++ + + E  I    + +  
Sbjct: 25 VVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPT 84

Query: 79 KIIGNN 84
          KI    
Sbjct: 85 KIEQIE 90

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 126

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 35.2 bits (80), Expect = 8e-04
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 12/98 (12%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           VIGGGN+ VE A+ L+ I + VTL+    +++ +++L D+L    N   +DI L     +
Sbjct: 35  VIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKN---VDIILNAQTTE 91

Query: 80  IIGNNTVTGQLEMNDGYIKTKLNKKTGYTST-NISGVF 116
           + G+ +    LE          ++ +G      ++G+F
Sbjct: 92  VKGDGSKVVGLEYR--------DRVSGDIHNIELAGIF 121

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 13/120 (10%), Positives = 23/120 (19%)

Query: 20  VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
           ++G G   VE A  L     +  +    +       L       +        L      
Sbjct: 8   IVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPD 67

Query: 80  IIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM 139
                 +          I     +        +              I    LA  +G  
Sbjct: 68  AYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQ 127

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 9  ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52
          AL  PV++    +G G  +V     L     +  +    ++   
Sbjct: 1  ALKAPVVV----LGAGLASVSFVAELRQAGYQGLITVVGDEAER 40

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 34.0 bits (76), Expect = 0.003
 Identities = 6/34 (17%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 20 VIGGGNTAVEEALYLSNI-AKKVTLIHRNEKLRC 52
          ++G G  ++  A +L+ +    +T+  + E +  
Sbjct: 9  LLGAGPASISCASFLARLGYSDITIFEKQEYVGG 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.89
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.89
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.82
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.82
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.8
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.79
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.79
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.78
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.78
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.77
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.76
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.76
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.73
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.72
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.7
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.7
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.69
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.65
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.64
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.64
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.63
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.63
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.62
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.62
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.61
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.61
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.61
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.59
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.59
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.59
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.57
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.56
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.56
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.55
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.53
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.53
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.51
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.51
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.5
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.48
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.47
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.46
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.43
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.35
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.31
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.28
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.19
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.19
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.16
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.06
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.99
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.85
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.8
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.77
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.74
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.68
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.61
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.6
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.58
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.5
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.49
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.49
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.48
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.48
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.39
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.37
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.36
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.35
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.34
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.33
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.32
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.27
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.22
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.2
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.19
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.19
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.18
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.17
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.15
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.97
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.95
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.94
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.87
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.82
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.78
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.7
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.67
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.66
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.63
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.6
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.59
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.59
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.55
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.53
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.5
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.5
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.48
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.42
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.37
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.36
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.35
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.23
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.16
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.12
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.03
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.02
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.92
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.84
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	96.77
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.58
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.56
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	96.38
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.37
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.28
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.26
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	96.24
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.14
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.1
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.07
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.92
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.87
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.77
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.62
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.59
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.58
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.5
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.44
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.41
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.41
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.25
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.22
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.22
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.12
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	95.11
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.09
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.94
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.92
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.89
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.8
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.79
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.76
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.73
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.65
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.61
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.58
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.56
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.56
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.53
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.53
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.47
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.47
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.41
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.39
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.39
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.38
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.38
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.31
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.29
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	94.14
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	94.13
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.13
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.07
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.07
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	94.06
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.05
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	93.94
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.93
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.91
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.91
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.85
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.84
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.83
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	93.82
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.77
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.76
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.76
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.73
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.73
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.6
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.57
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	93.54
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.53
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.52
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.43
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.36
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	93.33
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.3
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.29
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.28
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.22
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.09
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.07
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.04
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.97
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.95
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	92.84
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.83
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	92.78
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	92.73
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.67
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	92.54
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.5
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	92.49
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.47
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	92.41
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.39
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.27
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	92.25
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	92.25
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.91
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.89
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.86
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	91.83
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	91.83
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	91.83
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.82
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.74
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	91.74
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.74
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	91.73
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	91.49
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.46
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.33
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.3
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.25
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	91.24
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.24
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	91.23
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.19
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	91.16
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.12
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	91.04
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	90.93
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	90.85
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	90.79
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	90.7
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	90.62
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.55
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	90.55
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.54
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.53
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	90.49
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	90.39
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	90.31
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	90.26
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	90.25
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	90.13
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	89.97
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.94
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	89.88
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	89.83
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	89.79
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.57
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	89.55
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.38
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.3
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	89.29
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.28
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	89.19
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.13
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	89.07
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	89.0
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	88.96
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	88.93
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	88.88
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	88.84
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	88.83
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	88.78
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	88.67
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.67
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	88.45
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	88.36
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.29
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.24
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	88.21
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.19
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.15
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	87.84
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	87.83
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	87.82
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	87.77
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	87.76
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	87.76
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	87.71
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.4
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.3
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	87.29
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	87.19
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.18
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	86.76
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.53
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	86.49
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	86.07
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	85.73
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	85.67
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	85.57
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	85.05
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	84.75
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	84.53
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	84.24
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	82.01
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	81.94
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	81.28
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	80.6
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	80.31
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	80.24
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	80.13

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=2.8e-23  Score=146.00  Aligned_cols=127  Identities=28%  Similarity=0.365  Sum_probs=98.1

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC-----------------C------chHHHHHHHHhHHhcCCcEEE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL-----------------R------CEKILIDRLMQKVNEGKIDIK   72 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-----------------~------~~~~~~~~l~~~l~~~~v~i~   72 (148)
                      ++|+|||||++|+++|..+++.|.+|+++++....                 .      ..+++..++++++++.|+++.
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i~   85 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   85 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcceee
Confidence            34599999999999999999999999999864321                 0      124566777777777899987


Q ss_pred             cCceEEEEecCCe---------------------------------eecceeecC-CeEEecCCCCcccccCCCCCeEEe
Q psy5231          73 LKHIVHKIIGNNT---------------------------------VTGQLEMND-GYIKTKLNKKTGYTSTNISGVFCR  118 (148)
Q Consensus        73 ~~~~v~~i~~~~~---------------------------------~~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~  118 (148)
                      .. .|.++...+.                                 +..+++++. |+|.+|+..    ++|++|+||++
T Consensus        86 ~~-~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~----~~Ts~~GV~a~  160 (192)
T d1vdca1          86 TE-TVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGT----TQTSVPGVFAA  160 (192)
T ss_dssp             CC-CCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTS----CBCSSTTEEEC
T ss_pred             ee-eEEecccccCcEEecccceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCc----eEecCCCEEEe
Confidence            55 4555543221                                 112456664 888888754    99999999999


Q ss_pred             cccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         119 WRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       119 GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      |||.+.+ ++++..|+++|++||.++++||
T Consensus       161 GDv~~~~-~r~~v~A~g~G~~aA~~~~~yl  189 (192)
T d1vdca1         161 GDVQDKK-YRQAITAAGTGCMAALDAEHYL  189 (192)
T ss_dssp             GGGGCSS-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCcc-cceEEEEEechHHHHHHHHHHH
Confidence            9999877 6789999999999999999996

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=6.3e-23  Score=143.68  Aligned_cols=130  Identities=30%  Similarity=0.466  Sum_probs=98.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC------------CC------chHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK------------LR------CEKILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~------------~~------~~~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      +|+|||||++|+++|.++++.|.+|++|++.+.            +.      ....+.++...++.+.++.+... .|.
T Consensus         7 dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~   85 (190)
T d1trba1           7 KLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-HIN   85 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-CEE
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-eeE
Confidence            349999999999999999999999999987432            11      12456666777777788888765 466


Q ss_pred             EEecCCe---------------------------------eecceeecCCeEEecCCCCcccccCCCCCeEEecccCccc
Q psy5231          79 KIIGNNT---------------------------------VTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY  125 (148)
Q Consensus        79 ~i~~~~~---------------------------------~~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~  125 (148)
                      ++.....                                 +...+++++|+|.+|+....+.++|++|+||++|||++.+
T Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~~~~~~~~~~T~v~gV~aaGDv~~~~  165 (190)
T d1trba1          86 KVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI  165 (190)
T ss_dssp             EEECSSSSEEEEESSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSS
T ss_pred             EEecCCCcEEEEEeeeeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEecCCcccccccccCeEEEeEEecCcc
Confidence            5553321                                 1123456678898886532234799999999999999876


Q ss_pred             cchhHHHHHHHHHHHHHHHHhhC
Q psy5231         126 FIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       126 ~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                       ++|+.+|+++|++||.++++||
T Consensus       166 -~~q~i~Aag~G~~AA~~a~~yl  187 (190)
T d1trba1         166 -YRQAITSAGTGCMAALDAERYL  187 (190)
T ss_dssp             -SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -eeEEEEEeccHHHHHHHHHHHH
Confidence             6799999999999999999996

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.82  E-value=5.3e-20  Score=131.90  Aligned_cols=50  Identities=18%  Similarity=0.212  Sum_probs=44.7

Q ss_pred             ceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231          89 QLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus        89 ~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~  145 (148)
                      ++++++ |+|.||++     ++||+|||||+|||++.+  .+++.|+++|+.||.+|.
T Consensus       172 g~~~d~~G~I~vd~~-----~~TsvpgVyAaGDv~~~~--~l~~~A~~eG~~Aa~~i~  222 (229)
T d1ojta1         172 GVAVTDRGFIEVDKQ-----MRTNVPHIYAIGDIVGQP--MLAHKAVHEGHVAAENCA  222 (229)
T ss_dssp             TCCCCTTSCCCCCTT-----SBCSSTTEEECGGGTCSS--CCHHHHHHHHHHHHHHHT
T ss_pred             CccCCCCCCEEcCCC-----ccCCCCCEEEEEecCCCc--chHHHHHHHHHHHHHHHc
Confidence            466764 99999998     999999999999999887  588899999999999985

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.82  E-value=6.4e-20  Score=128.90  Aligned_cols=125  Identities=18%  Similarity=0.203  Sum_probs=90.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCch----HH-----------HHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRCE----KI-----------LIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~----~~-----------~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      +|+|||||++|+|+|..|++.  ..+|++++|.+.+...    +.           +.....+.|++.||++++++.|.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~   81 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence            469999999999999999987  4589999987654321    11           111123345578999999999998


Q ss_pred             EecCCe---------------------e-------------------ecceeec-CCeEEecCCCCcccccCCCCCeEEe
Q psy5231          80 IIGNNT---------------------V-------------------TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCR  118 (148)
Q Consensus        80 i~~~~~---------------------~-------------------~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~  118 (148)
                      +..+..                     +                   ...+.++ +|+|.+|+.     ++|+.|+|||+
T Consensus        82 i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~-----~~T~~~~IyA~  156 (198)
T d1nhpa1          82 IQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEY-----MRTSEPDVFAV  156 (198)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTT-----CBCSSTTEEEC
T ss_pred             EeeccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCc-----ccccccceEEe
Confidence            875421                     0                   0122334 478999988     99999999999


Q ss_pred             cccCcccc--------chhHHHHHHHHHHHHHHHHh
Q psy5231         119 WRCTRLYF--------IDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus       119 GD~~~~~~--------~~~~~~A~~~G~~aA~~i~~  146 (148)
                      |||+..+.        ...+..|..+|+.||.||..
T Consensus       157 GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~  192 (198)
T d1nhpa1         157 GDATLIKYNPADTEVNIALATNARKQGRFAVKNLEE  192 (198)
T ss_dssp             GGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSS
T ss_pred             cceeecccccCCCcccccHHHHHHHHHHHHHHhhCC
Confidence            99986431        12467889999999998754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.80  E-value=4e-19  Score=126.00  Aligned_cols=122  Identities=19%  Similarity=0.095  Sum_probs=86.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch-------------------------------------------
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE-------------------------------------------   53 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------------   53 (148)
                      +|+|||||++|+++|..+++.|.+|++|++.+.+.+.                                           
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAM   84 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHH
Confidence            4699999999999999999999999999987665320                                           


Q ss_pred             --------HHHHHHHHhHHhcCCcEEEcCceEEEE----------------ecCCe-----------------e---ecc
Q psy5231          54 --------KILIDRLMQKVNEGKIDIKLKHIVHKI----------------IGNNT-----------------V---TGQ   89 (148)
Q Consensus        54 --------~~~~~~l~~~l~~~~v~i~~~~~v~~i----------------~~~~~-----------------~---~~~   89 (148)
                              ..+.+.+...++..+++++.......-                ..+..                 +   ..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~g  164 (221)
T d1dxla1          85 MGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIG  164 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCTTTT
T ss_pred             HHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCccCccccCCCCChHhcC
Confidence                    001111222334567777644321110                00000                 0   114


Q ss_pred             eeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231          90 LEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus        90 ~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~  145 (148)
                      ++++. |+|.+|+.     ++||+|+|||+|||++.+  .++..|+.+|+.||.+|.
T Consensus       165 v~~~~~G~i~vd~~-----~~T~v~gi~A~GDv~~g~--~l~~~A~~~g~~aa~~i~  214 (221)
T d1dxla1         165 VETDKLGRILVNER-----FSTNVSGVYAIGDVIPGP--MLAHKAEEDGVACVEYLA  214 (221)
T ss_dssp             CCBCSSSCBCCCTT-----CBCSSTTEEECSTTSSSC--CCHHHHHHHHHHHHHHHT
T ss_pred             ceEcCCCcEEeCCC-----cccCCCCEEEEeccCCCc--ccHHHHHHHHHHHHHHHc
Confidence            56664 89999999     999999999999999877  689999999999999885

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.79  E-value=8.1e-19  Score=124.33  Aligned_cols=121  Identities=18%  Similarity=0.169  Sum_probs=85.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---------------------------------------h----
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---------------------------------------E----   53 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------------------------~----   53 (148)
                      +++|||||+.|+++|..+++.|.+|++|++.. +.+                                       .    
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            46999999999999999999999999999753 100                                       0    


Q ss_pred             ---HHHH----HHHHhHHhcCCcEEEcCce-------E--------EEEecCCe--------------------e---ec
Q psy5231          54 ---KILI----DRLMQKVNEGKIDIKLKHI-------V--------HKIIGNNT--------------------V---TG   88 (148)
Q Consensus        54 ---~~~~----~~l~~~l~~~~v~i~~~~~-------v--------~~i~~~~~--------------------~---~~   88 (148)
                         ....    ..+...++..+++++.+..       .        ..+..+..                    +   ..
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~  163 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQI  163 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSSTTTT
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCccccccceecCCCCChHhc
Confidence               0111    1122334467888765421       0        01111100                    0   11


Q ss_pred             ceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231          89 QLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus        89 ~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~  145 (148)
                      +++++ +|+|.||++     ++||+|+|||+|||++.+  .+++.|+++|+.||.+|.
T Consensus       164 gv~~~~~G~I~vd~~-----~~T~~~gvyA~GDv~~~~--~~~~~A~~~g~~aa~~i~  214 (223)
T d1ebda1         164 GIKMTNRGLIEVDQQ-----CRTSVPNIFAIGDIVPGP--ALAHKASYEGKVAAEAIA  214 (223)
T ss_dssp             TCCBCTTSCBCCCTT-----CBCSSTTEEECGGGSSSC--CCHHHHHHHHHHHHHHHT
T ss_pred             CceECCCCCEeECCC-----CCCCCCCEEEEeccCCCc--ccHHHHHHHHHHHHHHHc
Confidence            46676 489999998     999999999999999887  688999999999999985

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=7.4e-19  Score=121.47  Aligned_cols=126  Identities=25%  Similarity=0.348  Sum_probs=95.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC-----------CCc-----hHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK-----------LRC-----EKILIDRLMQKVNEGKIDIKLKHIVHKI   80 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-----------~~~-----~~~~~~~l~~~l~~~~v~i~~~~~v~~i   80 (148)
                      +|+|||||++|+++|..+++.|.+|++|+++.-           +..     .+.+...++.+.++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            469999999999999999999999999997310           111     2455566666666778888777666665


Q ss_pred             ecCCe--------------e-------------------ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc
Q psy5231          81 IGNNT--------------V-------------------TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF  126 (148)
Q Consensus        81 ~~~~~--------------~-------------------~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~  126 (148)
                      .....              +                   ...+... .|.+.+|..     .+|+.|+||++|||...+ 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~-----~~t~~~gv~a~gd~~~~~-  156 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAK-----CETNVKGVFAAGDCTTVP-  156 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTT-----CBCSSTTEEECSTTBSCS-
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCc-----eeeeCCCEEEEeeecCcc-
Confidence            43211              0                   0012222 377888888     999999999999998877 


Q ss_pred             chhHHHHHHHHHHHHHHHHhhC
Q psy5231         127 IDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       127 ~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      +++...|+++|..||.++.+||
T Consensus       157 ~~~~vva~g~G~~aA~~~~~~l  178 (184)
T d1fl2a1         157 YKQIIIATGEGAKASLSAFDYL  178 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECcHHHHHHHHHHH
Confidence            5789999999999999999986

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1e-18  Score=125.20  Aligned_cols=51  Identities=16%  Similarity=0.161  Sum_probs=44.0

Q ss_pred             ceeec--CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231          89 QLEMN--DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus        89 ~~~~~--~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~  145 (148)
                      +++++  .|+|.||++     ++||+|+|||+|||++.+ +++++.|+++|++||.+|.
T Consensus       175 gv~l~~~~g~I~vd~~-----~~TsvpgIyA~GDv~~g~-~~l~~~A~~eG~~aa~~~~  227 (235)
T d1h6va1         175 GVKINEKTGKIPVTDE-----EQTNVPYIYAIGDILEGK-LELTPVAIQAGRLLAQRLY  227 (235)
T ss_dssp             TCCCCSSSCCBCCCTT-----SBCSSTTEEECGGGBTTS-CCCHHHHHHHHHHHHHHHH
T ss_pred             eeeeccccCccccCCc-----cccCCCCEEEEEeccCCC-cccHHHHHHHHHHHHHHHc
Confidence            35555  388999999     999999999999998765 4678899999999999986

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-18  Score=123.85  Aligned_cols=123  Identities=18%  Similarity=0.211  Sum_probs=87.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch---------------------------------------H---
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE---------------------------------------K---   54 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~---------------------------------------~---   54 (148)
                      +++|||||+.|+++|..+++.|++|+++++.. +.+.                                       .   
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~-~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIK   83 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-CCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhh
Confidence            35999999999999999999999999998642 1110                                       0   


Q ss_pred             --------HHHHHHHhHHhcCCcEEEcCceEE------EEe-------cCCe----------------------e-ecce
Q psy5231          55 --------ILIDRLMQKVNEGKIDIKLKHIVH------KII-------GNNT----------------------V-TGQL   90 (148)
Q Consensus        55 --------~~~~~l~~~l~~~~v~i~~~~~v~------~i~-------~~~~----------------------~-~~~~   90 (148)
                              .+.....+.++..+|+++.+....      .+.       .+..                      + ..++
T Consensus        84 ~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~~~gv  163 (221)
T d3grsa1          84 EKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGI  163 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTEEESCTTTTGGGTTC
T ss_pred             hhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCCccccCCCCcCchhcCc
Confidence                    011122334567889887543211      000       0000                      1 1145


Q ss_pred             eecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231          91 EMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus        91 ~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      ++++ |+|.||++     ++||+|+|||+|||++.+  .++..|..+|++||.+|..+
T Consensus       164 ~~~~~G~I~vd~~-----~~T~~~gvyA~GDv~~~~--~l~~~A~~~G~~aa~~~~~~  214 (221)
T d3grsa1         164 QTDDKGHIIVDEF-----QNTNVKGIYAVGDVCGKA--LLTPVAIAAGRKLAHRLFEY  214 (221)
T ss_dssp             CBCTTSCBCCCTT-----CBCSSTTEEECGGGGTSS--CCHHHHHHHHHHHHHHHHSC
T ss_pred             EECCCccEEeCCC-----ccccCCcEEEEEEccCCc--CcHHHHHHHHHHHHHHHcCC
Confidence            6664 89999999     999999999999999876  57888999999999998754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.77  E-value=5.3e-19  Score=122.61  Aligned_cols=123  Identities=14%  Similarity=0.075  Sum_probs=86.7

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--h-HH----HHHH-----H-HhHHhcCCcEEEcCceEEEEecCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--E-KI----LIDR-----L-MQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~-~~----~~~~-----l-~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      |+|||||++|+|+|..|++.|.+|+++.+.++...  + +.    +...     + .+.+...+++++++++++++..+.
T Consensus         6 VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~~~   85 (183)
T d1d7ya1           6 VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQA   85 (183)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEETTT
T ss_pred             EEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccccc
Confidence            49999999999999999999998888776443211  1 11    1111     1 112235689999999998886543


Q ss_pred             e----------------ee-----------c------ceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc-----
Q psy5231          85 T----------------VT-----------G------QLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF-----  126 (148)
Q Consensus        85 ~----------------~~-----------~------~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~-----  126 (148)
                      .                +.           .      ++.. ++.|.+|++     ++|+.|+|||+|||+..+.     
T Consensus        86 ~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~-~~~I~vd~~-----~~ts~~~IyA~GD~a~~~~~~~g~  159 (183)
T d1d7ya1          86 HTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC-DDGIFVDAY-----GRTTCPDVYALGDVTRQRNPLSGR  159 (183)
T ss_dssp             TEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCB-SSSEECCTT-----CBCSSTTEEECGGGEEEECTTTCS
T ss_pred             ceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEee-CCcEEeccc-----eeccccccchhhhhhccceeeCCc
Confidence            2                00           0      1121 356899998     9999999999999986431     


Q ss_pred             ---chhHHHHHHHHHHHHHHHHh
Q psy5231         127 ---IDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus       127 ---~~~~~~A~~~G~~aA~~i~~  146 (148)
                         .+.+..|..+|+.||.||.+
T Consensus       160 ~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         160 FERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             EEECCCHHHHHHHHHHHHHHHHC
T ss_pred             eechhHHHHHHHHHHHHHHHHcC
Confidence               13578899999999999975

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.76  E-value=2.8e-18  Score=117.02  Aligned_cols=122  Identities=17%  Similarity=0.120  Sum_probs=86.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch-HHHHH-------------HHHhHHhcCCcEEEcCceEEEEec
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE-KILID-------------RLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-~~~~~-------------~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      +|+|||||++|+|+|..|++ +.+||++++.+.+... +.+.+             ...+.+++.++++++++.++++..
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~   80 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDR   80 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEET
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccccc
Confidence            56999999999999999976 6799999986543211 11111             112233467899999999988864


Q ss_pred             CCe---------------e-----------ecceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc--chhHHHHH
Q psy5231          83 NNT---------------V-----------TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--IDKQLLAL  134 (148)
Q Consensus        83 ~~~---------------~-----------~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--~~~~~~A~  134 (148)
                      +..               +           ..+++.++ .+.+|++     ++|+.|+||++|||+..+.  ......|.
T Consensus        81 ~~~~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~~-~i~v~~~-----~~t~~~~i~aiGD~~~~~~~~~~~~~~a~  154 (167)
T d1xhca1          81 GRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGR-GILIDDN-----FRTSAKDVYAIGDCAEYSGIIAGTAKAAM  154 (167)
T ss_dssp             TTTEEEESSCEEECSEEEECCCEECCHHHHHTTCCBSS-SEECCTT-----SBCSSTTEEECGGGEEBTTBCCCSHHHHH
T ss_pred             ccccccccccccccceeEEEEEecCCchhhhcCceeCC-ceeeccc-----cEecCCCeEEeeecccCCCeEEChHHHHH
Confidence            431               0           01334333 4888988     9999999999999986541  13557889


Q ss_pred             HHHHHHHHHHH
Q psy5231         135 GSGCMAALDAQ  145 (148)
Q Consensus       135 ~~G~~aA~~i~  145 (148)
                      .+|+.+|.+|.
T Consensus       155 ~~a~~~a~~i~  165 (167)
T d1xhca1         155 EQARVLADILK  165 (167)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHcC
Confidence            99999999875

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.76  E-value=2.1e-18  Score=122.21  Aligned_cols=50  Identities=18%  Similarity=0.193  Sum_probs=44.1

Q ss_pred             ceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231          89 QLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus        89 ~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~  145 (148)
                      ++.+++ |+|.+|++     ++|++|+|||+|||+..+  .++..|+++|..||.+|.
T Consensus       172 gv~l~~~G~i~vd~~-----~~T~vpgiyA~GDv~~g~--~l~~~A~~~G~~aa~~i~  222 (229)
T d3lada1         172 GVTLDERGFIYVDDY-----CATSVPGVYAIGDVVRGA--MLAHKASEEGVVVAERIA  222 (229)
T ss_dssp             SCCBCTTSCBCCCTT-----SBCSSTTEEECGGGSSSC--CCHHHHHHHHHHHHHHHH
T ss_pred             CeeecCCCcEEeccc-----ccCCCCCEEEEeCCcchH--HHHHHHHHHHHHHHHHHc
Confidence            456664 89999999     999999999999998877  578899999999999885

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.73  E-value=3.3e-18  Score=118.03  Aligned_cols=124  Identities=17%  Similarity=0.060  Sum_probs=81.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--h---------------HHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--E---------------KILIDRLMQKVNEGKIDIKLKHIVHK   79 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~---------------~~~~~~l~~~l~~~~v~i~~~~~v~~   79 (148)
                      +|+|||||++|+|+|..|++.|.+|+++++.+....  .               ..........+...+..+..+..+..
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTA   84 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCEEE
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccceeee
Confidence            459999999999999999999999998877543210  0               00000001111245566665655555


Q ss_pred             EecCCe----------------e-------eccee------ec-CCeEEecCCCCcccccCCCCCeEEecccCcccc---
Q psy5231          80 IIGNNT----------------V-------TGQLE------MN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF---  126 (148)
Q Consensus        80 i~~~~~----------------~-------~~~~~------~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~---  126 (148)
                      +..+..                +       ...+.      +. ++.+.||++     ++|+.|+||++|||+..+.   
T Consensus        85 ~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~-----~~ts~~~vya~GD~~~~~~~~~  159 (185)
T d1q1ra1          85 INRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEH-----MQTSDPLIMAVGDCARFHSQLY  159 (185)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTT-----SBCSSTTEEECGGGEEEEETTT
T ss_pred             ecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCc-----cccchhhhhcchhhhccccccC
Confidence            443321                0       00111      11 367889998     9999999999999987641   


Q ss_pred             -----chhHHHHHHHHHHHHHHHH
Q psy5231         127 -----IDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus       127 -----~~~~~~A~~~G~~aA~~i~  145 (148)
                           .+.+..|..+|+.||.+|.
T Consensus       160 ~~~~~~~~a~~A~~~g~~aa~~i~  183 (185)
T d1q1ra1         160 DRWVRIESVPNALEQARKIAAILC  183 (185)
T ss_dssp             TEEEECCSHHHHHHHHHHHHHHHT
T ss_pred             CcccchhhHHHHHHHHHHHHHHcc
Confidence                 1357899999999999985

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.72  E-value=3e-17  Score=119.64  Aligned_cols=50  Identities=20%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             ceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231          89 QLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus        89 ~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~  145 (148)
                      +++++ +|+|.||++     ++|++|+|||+|||++.+  .+++.|+.+|+.||.+|.
T Consensus       204 Gl~~~~~G~I~Vn~~-----~~Ts~~~IyA~GDv~~~~--~l~~~A~~~G~~aa~~i~  254 (261)
T d1mo9a1         204 GLDLGPKGEVLVNEY-----LQTSVPNVYAVGDLIGGP--MEMFKARKSGCYAARNVM  254 (261)
T ss_dssp             TCCBCTTSCBCCCTT-----SBCSSTTEEECGGGGCSS--CSHHHHHHHHHHHHHHHT
T ss_pred             eeeeccCCEEEeCCC-----cccCCCCEEEEEEeCCCc--ccHHHHHHHHHHHHHHHC
Confidence            46676 489999999     999999999999999877  689999999999999985

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=9.2e-17  Score=115.32  Aligned_cols=50  Identities=20%  Similarity=0.314  Sum_probs=43.9

Q ss_pred             ceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231          89 QLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus        89 ~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~  145 (148)
                      ++++++ |+|.||++     ++|++|+|||+|||++.+  ++.+.|..+|+.||.||.
T Consensus       175 gv~~~~~G~I~vd~~-----~~T~~~gIyA~GDv~~~~--~l~~~A~~~g~~aa~~~~  225 (233)
T d1xdia1         175 GIQLGRGNYLTVDRV-----SRTLATGIYAAGDCTGLL--PLASVAAMQGRIAMYHAL  225 (233)
T ss_dssp             TCCCBTTTBCCCCSS-----SBCSSTTEEECSGGGTSC--SCHHHHHHHHHHHHHHHT
T ss_pred             hhcccCCCcCCcCCC-----cccCCCCEEEEEEeCCCc--hhHHHHHHHHHHHHHHHc
Confidence            345664 88999999     999999999999999876  678899999999999985

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.8e-17  Score=117.94  Aligned_cols=51  Identities=14%  Similarity=-0.056  Sum_probs=43.9

Q ss_pred             ceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHh
Q psy5231          89 QLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus        89 ~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~  146 (148)
                      +++++. |+|.+|+.     ++|++|+|||+||++..+  .++..|..+|..||.+|..
T Consensus       176 gv~~~~~g~i~vd~~-----~~T~~~~v~A~GD~~~g~--~l~~~a~~~G~~aa~~i~~  227 (233)
T d1v59a1         176 GLEVDKRGRLVIDDQ-----FNSKFPHIKVVGDVTFGP--MLAHKAEEEGIAAVEMLKT  227 (233)
T ss_dssp             TCCBCTTSCBCCCTT-----SBCSSTTEEECGGGSSSC--CCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEcCCCcEEECCe-----EecCCCCEEEEcCCcccH--HHHHHHHHHHHHHHHHHcc
Confidence            345654 88999998     999999999999999887  5788999999999999863

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.69  E-value=2.2e-16  Score=111.98  Aligned_cols=49  Identities=20%  Similarity=0.086  Sum_probs=43.9

Q ss_pred             eeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231          90 LEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus        90 ~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~  145 (148)
                      +++++++|.||+.     ++|++|+|||+|||++.+  .+++.|..+|+.||.+|.
T Consensus       165 ~~~~~g~i~vd~~-----~~T~~~~I~A~GDv~~~~--~l~~~a~~~g~~~a~~i~  213 (220)
T d1lvla1         165 LKMNGAAIAIDER-----CQTSMHNVWAIGDVAGEP--MLAHRAMAQGEMVAEIIA  213 (220)
T ss_dssp             CCEETTEECCCTT-----CBCSSTTEEECGGGGCSS--CCHHHHHHHHHHHHHHHT
T ss_pred             hhhcCCcccccch-----hhcCCCCEEEEEEeCCcc--cchhhhhhhHHHHHHHHc
Confidence            4456799999999     999999999999999887  589999999999999885

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=4.5e-16  Score=102.25  Aligned_cols=78  Identities=51%  Similarity=0.756  Sum_probs=72.5

Q ss_pred             hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231           3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus         3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      .|.|++|+||+|    +|||||++|+|+|.+|++++++||+++|++++++++.+.+++++..++.++.+++++.+.++.+
T Consensus        19 ~cD~~~~~~k~V----~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G   94 (126)
T d1trba2          19 TSDGFFYRNQKV----AVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTG   94 (126)
T ss_dssp             HHHGGGGTTSEE----EEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEE
T ss_pred             ecchHHhCCCEE----EEECCCHHHHHHHHHHhhcCCcEEEEeecccccchhHHHHHHHHhhcccceeEecceEEEEEEC
Confidence            378999999999    9999999999999999999999999999999999888888888777788999999999999988


Q ss_pred             CC
Q psy5231          83 NN   84 (148)
Q Consensus        83 ~~   84 (148)
                      ++
T Consensus        95 ~~   96 (126)
T d1trba2          95 DQ   96 (126)
T ss_dssp             CS
T ss_pred             CC
Confidence            65

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=7.3e-16  Score=99.77  Aligned_cols=74  Identities=15%  Similarity=0.218  Sum_probs=65.2

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      -+++|++++|||||++|+|+|..|+++|.+||+++|.+++..  +++..+.+.+.|++.||++++++.++++..++
T Consensus        17 l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~   92 (116)
T d1gesa2          17 LPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNT   92 (116)
T ss_dssp             CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECT
T ss_pred             hhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcC
Confidence            356678889999999999999999999999999999887643  67888889999999999999999999987654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.64  E-value=4.1e-15  Score=105.72  Aligned_cols=50  Identities=12%  Similarity=0.106  Sum_probs=45.2

Q ss_pred             ceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231          89 QLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus        89 ~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~  145 (148)
                      ++.+++|+|.+|++     ++|++|+|||+|||++.+  .+++.|..||+.||.+|.
T Consensus       182 gv~~~~G~I~vde~-----~~T~~~~iyAvGDv~~~~--~l~~~A~~eg~~aa~~i~  231 (238)
T d1aoga1         182 GVMIKNGGVQVDEY-----SRTNVSNIYAIGDVTNRV--MLTPVAINEAAALVDTVF  231 (238)
T ss_dssp             TCCEETTEECCCTT-----CBCSSTTEEECGGGGTSC--CCHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCeEEecCC-----eeeccCCEEEEEEecCCc--cchhhHHHHHHHHHHHHc
Confidence            45666899999999     999999999999999887  688999999999999985

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.63  E-value=1.6e-15  Score=98.63  Aligned_cols=73  Identities=18%  Similarity=0.171  Sum_probs=65.5

Q ss_pred             CcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        12 k~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      +++|++++|||||++|+|+|..|++.|++||++++.+++.  .++++.+.+++.|++.||++++++++++++.++
T Consensus        19 ~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~   93 (119)
T d3lada2          19 QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKN   93 (119)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECS
T ss_pred             ccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEEEEEeC
Confidence            5677888999999999999999999999999999988764  367888899999999999999999999997654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.63  E-value=1.1e-15  Score=98.88  Aligned_cols=74  Identities=18%  Similarity=0.261  Sum_probs=65.3

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      -+..|++++|||||++|+|+|..|+++|.+||+++|.+++..  ++++.+.+.+.|++.||++++++++++++.++
T Consensus        18 ~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~   93 (117)
T d1ebda2          18 LGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEERE   93 (117)
T ss_dssp             CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEET
T ss_pred             hhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcC
Confidence            455678889999999999999999999999999999988743  67788889999999999999999999997643

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.62  E-value=9.8e-16  Score=101.10  Aligned_cols=74  Identities=36%  Similarity=0.574  Sum_probs=68.3

Q ss_pred             hhhh--hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231           4 EFGI--LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKII   81 (148)
Q Consensus         4 ~~g~--~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~   81 (148)
                      |.|.  +|+||+|    +|||||++|+|+|.+|++.+++||+++|++++++++.+.+++++   ..+|++++++.+.++.
T Consensus        25 CDg~a~~frgk~V----~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~~~~l~~---~~nI~v~~~~~v~~i~   97 (130)
T d1vdca2          25 CDGAAPIFRNKPL----AVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALS---NPKIDVIWNSSVVEAY   97 (130)
T ss_dssp             HHTTSGGGTTSEE----EEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHT---CTTEEEECSEEEEEEE
T ss_pred             ecCchHHhCCCEE----EEEcCchHHHHHHHHHhCCCCcEEEEEeccccccchhhhhcccc---CCceEEEeccEEEEEE
Confidence            5564  8999999    99999999999999999999999999999999998888888886   7899999999999998


Q ss_pred             cCC
Q psy5231          82 GNN   84 (148)
Q Consensus        82 ~~~   84 (148)
                      +++
T Consensus        98 Gd~  100 (130)
T d1vdca2          98 GDG  100 (130)
T ss_dssp             ESS
T ss_pred             ccC
Confidence            865

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.62  E-value=3e-15  Score=107.23  Aligned_cols=51  Identities=18%  Similarity=0.171  Sum_probs=45.1

Q ss_pred             ceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHh
Q psy5231          89 QLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus        89 ~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~  146 (148)
                      +++++. |+|.||++     ++||+|+|||+|||++.+  .+++.|..+|+.||.++..
T Consensus       182 gv~~~~~G~I~vd~~-----~~Ts~~~iyA~GDv~~~~--~~~~~A~~eg~~aa~~~~~  233 (240)
T d1feca1         182 GVEVAKNGAIKVDAY-----SKTNVDNIYAIGDVTDRV--MLTPVAINEGAAFVDTVFA  233 (240)
T ss_dssp             TCCBCTTSCBCCCTT-----CBCSSTTEEECGGGGCSC--CCHHHHHHHHHHHHHHHHS
T ss_pred             CeEECCCCcEEcCcc-----cCcCCCCEEEEEECCCCc--cchhhHHHHHHHHHHHHhC
Confidence            466764 89999999     999999999999999887  6888999999999999864

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.6e-15  Score=99.60  Aligned_cols=74  Identities=34%  Similarity=0.479  Sum_probs=69.0

Q ss_pred             hhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231           4 EFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus         4 ~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      |.|.+++||+|    +|||||++|+|.|.+|++.+++|||++|++++++.+.+.+++++   ..+|++++++.+.++.++
T Consensus        23 cD~~~~~gk~V----~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~---~~~I~v~~~~~v~~i~G~   95 (126)
T d1fl2a2          23 CDGPLFKGKRV----AVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRS---LKNVDIILNAQTTEVKGD   95 (126)
T ss_dssp             HHGGGGBTCEE----EEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHT---CTTEEEESSEEEEEEEES
T ss_pred             cChhhcCCceE----EEEeCCHHHHHHHHhhhccCCceEEEeccccccccccccccccc---ccceeEEcCcceEEEEcc
Confidence            68999999999    99999999999999999999999999999999988888888876   678999999999999986


Q ss_pred             C
Q psy5231          84 N   84 (148)
Q Consensus        84 ~   84 (148)
                      +
T Consensus        96 ~   96 (126)
T d1fl2a2          96 G   96 (126)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.6e-16  Score=111.77  Aligned_cols=123  Identities=17%  Similarity=0.244  Sum_probs=86.6

Q ss_pred             EEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCCch-H------------H-------------------------HH
Q psy5231          18 TDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLRCE-K------------I-------------------------LI   57 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~-~------------~-------------------------~~   57 (148)
                      ++|||||++|+++|..|++.+  .+|+++++.+.++.+ +            .                         ..
T Consensus         7 ~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (213)
T d1m6ia1           7 FLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVS   86 (213)
T ss_dssp             EEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGSBC
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhhhh
Confidence            499999999999999998875  469999874332110 0            0                         00


Q ss_pred             HHHHhHHhcCCcEEEcCceEEEEecCCe---------------------------e--ecceeec--CCeEEecCCCCcc
Q psy5231          58 DRLMQKVNEGKIDIKLKHIVHKIIGNNT---------------------------V--TGQLEMN--DGYIKTKLNKKTG  106 (148)
Q Consensus        58 ~~l~~~l~~~~v~i~~~~~v~~i~~~~~---------------------------~--~~~~~~~--~g~i~vd~~~~~~  106 (148)
                      ......+++.||+++++++|.+|..+..                           +  ..+++++  .+.|.+|++    
T Consensus        87 ~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~----  162 (213)
T d1m6ia1          87 AQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAE----  162 (213)
T ss_dssp             TTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTT----
T ss_pred             hhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHh----
Confidence            1111233467999999999999865432                           0  1134443  378999999    


Q ss_pred             cccCCCCCeEEecccCcccc-------chhHHHHHHHHHHHHHHHHh
Q psy5231         107 YTSTNISGVFCRWRCTRLYF-------IDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus       107 ~~~t~~~~vya~GD~~~~~~-------~~~~~~A~~~G~~aA~~i~~  146 (148)
                       ++|+ |+|||+|||+..+.       ...+..|..+|+.||.||..
T Consensus       163 -l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g  207 (213)
T d1m6ia1         163 -LQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTG  207 (213)
T ss_dssp             -CEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTS
T ss_pred             -cCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcC
Confidence             8988 99999999976431       13567899999999999863

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1.8e-15  Score=98.81  Aligned_cols=72  Identities=21%  Similarity=0.254  Sum_probs=64.6

Q ss_pred             CcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231          12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus        12 k~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      +..|++++|||||++|+|+|..|++.|.+||++++.+++..  ++++.+.+++.|++.||++++++++++++.+
T Consensus        20 ~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~   93 (122)
T d1v59a2          20 KEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRN   93 (122)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEE
T ss_pred             ccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEEEe
Confidence            45678889999999999999999999999999999887643  6788899999999999999999999998754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.59  E-value=2e-15  Score=98.67  Aligned_cols=74  Identities=16%  Similarity=0.202  Sum_probs=66.0

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      -+++|++++|||||.+|+|+|..|+++|.+||+++|.+.+..  +++..+.+.+.|++.||++++++++.+++.++
T Consensus        21 l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~   96 (123)
T d1dxla2          21 LSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSG   96 (123)
T ss_dssp             CSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSS
T ss_pred             ccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEEEEcc
Confidence            356788889999999999999999999999999999887643  67888899999999999999999999998654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.8e-15  Score=97.52  Aligned_cols=72  Identities=18%  Similarity=0.262  Sum_probs=64.3

Q ss_pred             CcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231          12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus        12 k~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      +++||+++|||||++|+|+|..|++.|.+||+++|++++..  ++++.+.+++.|++.||+++++++++++..+
T Consensus        19 ~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~   92 (125)
T d3grsa2          19 EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKT   92 (125)
T ss_dssp             CSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEE
T ss_pred             hhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEc
Confidence            45567889999999999999999999999999999988743  6788889999999999999999999999754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.59  E-value=4.7e-15  Score=96.09  Aligned_cols=69  Identities=17%  Similarity=0.198  Sum_probs=62.0

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      |++++|||||++|+|+|..|++.|++||+++|.+++..  ++.+.+.+++.|++.||++++++.+++++..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~   92 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKV   92 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEEEEEc
Confidence            57779999999999999999999999999999887632  6788899999999999999999999999754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=8.5e-15  Score=95.50  Aligned_cols=72  Identities=24%  Similarity=0.240  Sum_probs=62.4

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-hHHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-EKILIDRLMQKVNEGKIDIKLKHIVHKIIG   82 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~   82 (148)
                      -++.|++++|||||++|+|+|..|+++|++||+++|+..++. ++++.+.+++.|++.||++++++.+++++.
T Consensus        16 l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~   88 (122)
T d1h6va2          16 LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQ   88 (122)
T ss_dssp             CSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEE
T ss_pred             cccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence            345677889999999999999999999999999998644443 677889999999999999999999998864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.56  E-value=8.8e-15  Score=101.31  Aligned_cols=129  Identities=11%  Similarity=0.148  Sum_probs=84.6

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCCCch-----------HHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKLRCE-----------KILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~-----------~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      .+|+|    +|||||++|+++|..|++.|. +|+|+++.+.+.+.           ..........+...+..+.....+
T Consensus         3 ~~~kV----aIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   78 (196)
T d1gtea4           3 YSAKI----ALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSL   78 (196)
T ss_dssp             GGCCE----EEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCB
T ss_pred             CCCEE----EEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEe
Confidence            45566    999999999999999999997 59999998776431           122222222333566777766554


Q ss_pred             EEEecCC-------e----ee----------------cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchh
Q psy5231          78 HKIIGNN-------T----VT----------------GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDK  129 (148)
Q Consensus        78 ~~i~~~~-------~----~~----------------~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~  129 (148)
                      .......       .    +.                ....+. .+....+...    ++|+.|.+|+.||+++..  ..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~g~vigg~--~~  152 (196)
T d1gtea4          79 SENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPET----MQTSEPWVFAGGDIVGMA--NT  152 (196)
T ss_dssp             STTSBCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTT----CBCSSTTEEECSGGGCSC--CC
T ss_pred             ccceeeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccc----cCCCcccccccccccCCc--ch
Confidence            2111000       0    00                001111 1233334443    899999999999998765  57


Q ss_pred             HHHHHHHHHHHHHHHHhhC
Q psy5231         130 QLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       130 ~~~A~~~G~~aA~~i~~~l  148 (148)
                      ...|+.+|+.+|..+++++
T Consensus       153 av~a~~~g~~~a~~v~r~~  171 (196)
T d1gtea4         153 TVESVNDGKQASWYIHKYI  171 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhehhHhhcc
Confidence            8899999999999998763

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.56  E-value=8.3e-15  Score=94.50  Aligned_cols=74  Identities=18%  Similarity=0.273  Sum_probs=64.4

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      .-+..|++++|||||++|+|+|..|++.|++||++++.+++.  .+++..+.+++.|++.||+++++++|+++..+
T Consensus        16 ~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~   91 (115)
T d1lvla2          16 APKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENG   91 (115)
T ss_dssp             CCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEETT
T ss_pred             CcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEcCC
Confidence            345667888999999999999999999999999999988763  36778888889999999999999999988653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.55  E-value=2.1e-14  Score=92.79  Aligned_cols=73  Identities=18%  Similarity=0.240  Sum_probs=62.2

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhc---CCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNI---AKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      -++.|++++|||||++|+|+|..|+++   |.+||++++.+++..  +++..+.+++.|++.||++++++.++++..+
T Consensus        14 l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~   91 (117)
T d1feca2          14 LDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKN   91 (117)
T ss_dssp             CSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEEC
T ss_pred             ccccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEEC
Confidence            345567789999999999999887664   889999999887643  6778888999999999999999999999754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.53  E-value=4e-14  Score=92.15  Aligned_cols=68  Identities=22%  Similarity=0.242  Sum_probs=60.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      +++|||||++|+|+|..|++.|++||++++.+.+.. +++..+.+.+.|++.||++++++.+.++..+.
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~  102 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEG  102 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSSE
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCE
Confidence            349999999999999999999999999999887643 67788888888989999999999999987654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.53  E-value=2e-14  Score=94.15  Aligned_cols=75  Identities=15%  Similarity=0.150  Sum_probs=65.8

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      .-+.+|++++|||||.+|+|+|..++++|.+||++++++++.  .++++.+.+++.|++.||++++++.+++++.+.
T Consensus        21 ~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~   97 (125)
T d1ojta2          21 ALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE   97 (125)
T ss_dssp             TCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEET
T ss_pred             CccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEEEEEcC
Confidence            345667888999999999999999999999999999988764  367888999999999999999999999987543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.51  E-value=5.8e-14  Score=91.53  Aligned_cols=69  Identities=26%  Similarity=0.318  Sum_probs=60.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      ++++|||||++|+|+|..|++.|++||++++.+++.   .+++..+.+++.|++.||++++++.++++++++
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~  102 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDG  102 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSS
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCC
Confidence            444999999999999999999999999999987763   257788888888989999999999999998765

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.51  E-value=5.9e-14  Score=90.94  Aligned_cols=69  Identities=20%  Similarity=0.326  Sum_probs=60.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      ++++|||||++|+|+|..|+++|.+|++++|.+.+.  .++...+.+++.|++.||++++++++.+++.++
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~   93 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDA   93 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecC
Confidence            444999999999999999999999999999987763  367788888888889999999999999998654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.50  E-value=1.5e-13  Score=88.75  Aligned_cols=72  Identities=25%  Similarity=0.196  Sum_probs=61.3

Q ss_pred             CcccceEEEEcCchHHHHHHHHHhhcC---CeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231          12 KPVIIFTDVIGGGNTAVEEALYLSNIA---KKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus        12 k~v~~~v~ViGgG~~g~e~A~~l~~~g---~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      +..|++++|||||++|+|+|..|..++   .+||+++|.+++..  ++.+.+.+++.|++.||++++++++++++.+
T Consensus        17 ~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~   93 (117)
T d1aoga2          17 PEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELN   93 (117)
T ss_dssp             SSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEEC
T ss_pred             hhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEc
Confidence            455677799999999999998887664   57999999887643  5788889999999999999999999999753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.48  E-value=1.4e-13  Score=89.41  Aligned_cols=67  Identities=18%  Similarity=0.254  Sum_probs=58.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      +++|||||++|+|+|..|+++|++||++++.+++..   ++...+.+++.|+++||+++++++++++...
T Consensus        32 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~  101 (121)
T d1d7ya2          32 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG  101 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEETT
T ss_pred             eEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCC
Confidence            349999999999999999999999999999988632   5677888888888999999999999887654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.7e-13  Score=94.70  Aligned_cols=121  Identities=18%  Similarity=0.176  Sum_probs=83.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch----------------------------------------H--
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE----------------------------------------K--   54 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------------~--   54 (148)
                      +|+|||||+.|+++|..+++.|.+|++|++.+ +.+.                                        +  
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            46999999999999999999999999999742 3210                                        0  


Q ss_pred             ---------HHHHHHHhHHhcCCcEEEcCceEEEEe----cCCe-------------------ee---------cceeec
Q psy5231          55 ---------ILIDRLMQKVNEGKIDIKLKHIVHKII----GNNT-------------------VT---------GQLEMN   93 (148)
Q Consensus        55 ---------~~~~~l~~~l~~~~v~i~~~~~v~~i~----~~~~-------------------~~---------~~~~~~   93 (148)
                               .+...+...+++.||++..........    .++.                   .+         .++.++
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~  162 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTN  162 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecCCCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEc
Confidence                     011112333456788876554332211    0110                   00         134444


Q ss_pred             -CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231          94 -DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus        94 -~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~  145 (148)
                       .+++.+|+.     ++|+.|+||++||+....  ..+..+..+|..++..+.
T Consensus       163 ~~~~i~~d~~-----~~t~~~~i~~iG~g~~g~--ela~~~~~~G~~v~~~~~  208 (217)
T d1gesa1         163 EKGYIVVDKY-----QNTNIEGIYAVGDNTGAV--ELTPVAVAAGRRLSERLF  208 (217)
T ss_dssp             TTSCBCCCTT-----SBCSSTTEEECSGGGTSC--CCHHHHHHHHHHHHHHHH
T ss_pred             CCccEeeCch-----hccCCCcEEEECCCccHH--HHHHHHHHHHHHHHHHHh
Confidence             378888888     999999999999998776  567789999999998764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.46  E-value=2.2e-13  Score=92.48  Aligned_cols=129  Identities=19%  Similarity=0.179  Sum_probs=78.2

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCCc---hHHHH---------HHHHhHHhcCCcEEEcCce
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLRC---EKILI---------DRLMQKVNEGKIDIKLKHI   76 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~---~~~~~---------~~l~~~l~~~~v~i~~~~~   76 (148)
                      ||++    +|||||++|+|+|..|++.+  .+||++++.+.+..   .....         ......+...++.+..++.
T Consensus         2 gkri----vIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   77 (186)
T d1fcda1           2 GRKV----VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSA   77 (186)
T ss_dssp             CCEE----EEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCE
T ss_pred             CCcE----EEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeee
Confidence            5555    99999999999999999987  48999998765311   11000         0001111246777765543


Q ss_pred             EEEEecCCe----------------eec--------------------ceeecCCeEEecCCCCcccccCCCCCeEEecc
Q psy5231          77 VHKIIGNNT----------------VTG--------------------QLEMNDGYIKTKLNKKTGYTSTNISGVFCRWR  120 (148)
Q Consensus        77 v~~i~~~~~----------------~~~--------------------~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD  120 (148)
                      + .+.....                +..                    ++..+.++..+++..   ...++.|+||++||
T Consensus        78 ~-~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~iGd  153 (186)
T d1fcda1          78 T-GIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKT---FESSIHKGIHVIGD  153 (186)
T ss_dssp             E-ECCTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSS---CBBSSSTTEEECTT
T ss_pred             E-eeeeccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeee---eecccccCceEecc
Confidence            3 2221110                000                    111223344444331   04578999999999


Q ss_pred             cCcccc-chhHHHHHHHHHHHHHHHHhh
Q psy5231         121 CTRLYF-IDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       121 ~~~~~~-~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      ++...+ .+....|..+|+.+|.+|.+.
T Consensus       154 ~~~~~~~p~~~~~A~~q~~~~A~ni~~~  181 (186)
T d1fcda1         154 ASIANPMPKSGYSANSQGKVAAAAVVVL  181 (186)
T ss_dssp             SEECTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCchHhHHHHHHHHHHHHHHHH
Confidence            976532 145778899999999999875

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.43  E-value=2.8e-13  Score=89.39  Aligned_cols=68  Identities=21%  Similarity=0.122  Sum_probs=58.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN   83 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~   83 (148)
                      ++++|||||++|+|+|..|++.|.+||++++.+++..   ++...+.+++.|+++||++++++.+++++..
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~  106 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMS  106 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEC
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEe
Confidence            4449999999999999999999999999999888632   4567777888888999999999999998754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.35  E-value=2.4e-13  Score=97.85  Aligned_cols=38  Identities=32%  Similarity=0.300  Sum_probs=34.0

Q ss_pred             ccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         108 TSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       108 ~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ++|++||||++||+.+++   .+..|+.+|+.||..|.+||
T Consensus       332 ~~t~~pglf~aGd~~~g~---~~~~A~~~G~~aA~~i~~~L  369 (373)
T d1seza1         332 MEKNLPGLFYAGNHRGGL---SVGKALSSGCNAADLVISYL  369 (373)
T ss_dssp             HHHHSTTEEECCSSSSCS---SHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEecCCCch---hHHHHHHHHHHHHHHHHHHH
Confidence            568899999999998765   68899999999999999986

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.8e-12  Score=83.23  Aligned_cols=68  Identities=21%  Similarity=0.232  Sum_probs=57.6

Q ss_pred             eEEEEcCchHHHHHHHHHhh----cCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN----IAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~----~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      +++|||||++|+|+|..|++    .|.+||++++.+.+.   .+++..+.+.+.|++.||++++++.++++..++
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~  113 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS  113 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEET
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecC
Confidence            34999999999999999964    589999999987753   256677888888989999999999999997653

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.28  E-value=5e-11  Score=85.60  Aligned_cols=125  Identities=18%  Similarity=0.204  Sum_probs=85.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-------------------------h------------------
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-------------------------E------------------   53 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------~------------------   53 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+++..                         .                  
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   85 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFIS   85 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHHH
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccchhh
Confidence            459999999999999999999999999998653210                         0                  


Q ss_pred             -----------------------HHHHHHHHhHHhcCCcEEEcCceEEEEecCCe---------------------eec-
Q psy5231          54 -----------------------KILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT---------------------VTG-   88 (148)
Q Consensus        54 -----------------------~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~---------------------~~~-   88 (148)
                                             ..+.+.+.+.+++.||++++++.|.++.....                     +.. 
T Consensus        86 ~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtG  165 (253)
T d2gqfa1          86 LVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATG  165 (253)
T ss_dssp             HHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCC
T ss_pred             hhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCC
Confidence                                   02334455566678999999999998764221                     000 


Q ss_pred             --------------------ce------eecCCeEE---ecCCCCcccccC-CCCCeEEecccCcc----ccchhHHHHH
Q psy5231          89 --------------------QL------EMNDGYIK---TKLNKKTGYTST-NISGVFCRWRCTRL----YFIDKQLLAL  134 (148)
Q Consensus        89 --------------------~~------~~~~g~i~---vd~~~~~~~~~t-~~~~vya~GD~~~~----~~~~~~~~A~  134 (148)
                                          +.      ....|.+.   +|+.+    |++ .+||+|.+|-+.+.    .++ +...|.
T Consensus       166 G~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t----~es~~~~gl~~~ge~ldv~g~~gg~-n~~~a~  240 (253)
T d2gqfa1         166 GLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKT----MESNQVSGLYFIGEVLDVTGWLGGY-NFQWAW  240 (253)
T ss_dssp             CSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTT----CBBSSSTTEEECGGGBSCEECTTTH-HHHHHH
T ss_pred             cccccccCCCchHHHHHHhccccccccccccCCCCcccccCccc----hhhhcCCCcEEeeeEEEeeeecCCE-ehhhhH
Confidence                                00      01112232   34443    665 58999999966542    123 788999


Q ss_pred             HHHHHHHHHHHh
Q psy5231         135 GSGCMAALDAQR  146 (148)
Q Consensus       135 ~~G~~aA~~i~~  146 (148)
                      .+|+.|+.+|.+
T Consensus       241 ~s~~~~~~~~~~  252 (253)
T d2gqfa1         241 SSAYACALSISR  252 (253)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhc
Confidence            999999999875

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=2.3e-11  Score=83.83  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=52.8

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch-------------HHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE-------------KILIDRLMQKVNEGKIDIKLKHIVH   78 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------~~~~~~l~~~l~~~~v~i~~~~~v~   78 (148)
                      +|+|+|||||++|+++|..|+++|++|+|+++.+++.+.             .+..+.+.+++++.||++++++.|.
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt  119 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT  119 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEc
Confidence            355699999999999999999999999999998766431             2455667777778899999998774

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.19  E-value=2.5e-11  Score=81.44  Aligned_cols=67  Identities=13%  Similarity=0.091  Sum_probs=55.4

Q ss_pred             EEE--cCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe
Q psy5231          19 DVI--GGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT   85 (148)
Q Consensus        19 ~Vi--GgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~   85 (148)
                      +|+  |||.+|+|+|..|+++|++||++++.+.+..  ++.....+.+.|++.||++++++.+.++..+..
T Consensus        43 vi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~v  113 (156)
T d1djqa2          43 VILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRM  113 (156)
T ss_dssp             EEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETTEE
T ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEEEEecCcce
Confidence            554  9999999999999999999999999876643  334455667777789999999999999987653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.16  E-value=4.5e-10  Score=79.82  Aligned_cols=33  Identities=27%  Similarity=0.370  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            459999999999999999999999999998643

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.06  E-value=2.2e-09  Score=79.22  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|.+|+-+|..|++.|.+|+|+|+.+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            56999999999999999999999999999743

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=2e-10  Score=84.84  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~   50 (148)
                      +|+|||+|+.|+.+|..|++.  |.+|+++++.+.+
T Consensus        52 ~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            459999999999999999964  9999999997654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.85  E-value=4.6e-09  Score=70.30  Aligned_cols=69  Identities=22%  Similarity=0.193  Sum_probs=51.9

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCC--CchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~--~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                      +..+++|    +|||||++|+|+|..+.+.| ++|++++|++..  ...+.....+.    +.++.+++...+.++..+.
T Consensus        42 p~~~~kV----vVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~~~~~~a~----~~~~~~~~~~~~~ei~~~~  113 (153)
T d1gtea3          42 PSIRGAV----IVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAK----EEKCEFLPFLSPRKVIVKG  113 (153)
T ss_dssp             CCCCSEE----EEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHHHHH----HTTCEEECSEEEEEEEEET
T ss_pred             ccCCCEE----EEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccchhheeecc----cccceeEeccccEEEEecC
Confidence            3445666    99999999999999999986 568899997654  33444444444    5789999988888876543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.80  E-value=4.4e-08  Score=72.06  Aligned_cols=31  Identities=19%  Similarity=0.346  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|.+|+-+|..+++.|.+|.|+++.
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4699999999999999999999999999974

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.77  E-value=3.3e-08  Score=70.83  Aligned_cols=31  Identities=29%  Similarity=0.362  Sum_probs=29.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|||||+.|+.+|..+++.|.+|.|+++.
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            4699999999999999999999999999974

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.74  E-value=7.9e-08  Score=70.68  Aligned_cols=31  Identities=19%  Similarity=0.188  Sum_probs=28.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|++|+-+|..+++.|.+|+|+++.
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            4599999999999999999999999999873

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.68  E-value=1.9e-07  Score=67.91  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=29.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|.+|+-+|..|++.|.+|+|||+.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            46999999999999999999999999999743

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.61  E-value=2.3e-07  Score=70.14  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhh------cCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN------IAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+-+|..|++      .|.+|.|+|+...+
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            45999999999999999997      79999999986543

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=3.8e-08  Score=65.66  Aligned_cols=76  Identities=17%  Similarity=0.146  Sum_probs=50.8

Q ss_pred             hhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCe-------------------------------------EEEEEeC
Q psy5231           5 FGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKK-------------------------------------VTLIHRN   47 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~-------------------------------------Vtlv~~~   47 (148)
                      .+....||+|    +|||||++|+|+|..+++.|.+                                     ++.+...
T Consensus        23 ~~~~~~gkrV----vVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (162)
T d1ps9a2          23 RDKAPVGNKV----AIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRK   98 (162)
T ss_dssp             TSCCCCCSEE----EEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSS
T ss_pred             hCccccCCce----EEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccccceeccccceEEEEEec
Confidence            3444556666    9999999999999999998864                                     3333332


Q ss_pred             -CCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231          48 -EKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN   84 (148)
Q Consensus        48 -~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~   84 (148)
                       ..+..  .......++..++..++++++++.+.++..++
T Consensus        99 ~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~g  138 (162)
T d1ps9a2          99 ASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDG  138 (162)
T ss_dssp             CSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTE
T ss_pred             cchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcCCC
Confidence             22211  12223334445557999999999999987654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.58  E-value=2.8e-08  Score=62.33  Aligned_cols=45  Identities=20%  Similarity=0.091  Sum_probs=40.8

Q ss_pred             chhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231           2 QYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus         2 ~~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|.....+.||+|    +|||+|++|+++|.+|++.+++|+++.+++..
T Consensus        23 ~y~~~~~f~gK~V----lVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~   67 (107)
T d2gv8a2          23 LFREPELFVGESV----LVVGGASSANDLVRHLTPVAKHPIYQSLLGGG   67 (107)
T ss_dssp             GCCCGGGGTTCCE----EEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             cCcchhhcCCCeE----EEECCCCCHHHHHHHHHHhcCEEEEEEecCcc
Confidence            5788889999999    99999999999999999999999988887654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=8.1e-08  Score=67.11  Aligned_cols=62  Identities=15%  Similarity=0.164  Sum_probs=47.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcC-------CeEEEEEeCCCCCc------------hHHHHHHHHhHHhcCCcEEEcCce
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIA-------KKVTLIHRNEKLRC------------EKILIDRLMQKVNEGKIDIKLKHI   76 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g-------~~Vtlv~~~~~~~~------------~~~~~~~l~~~l~~~~v~i~~~~~   76 (148)
                      .+|+|||+|++|+.+|..|++.|       .+|||+++.+.+.+            .....+.....+...++++++++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~   82 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVV   82 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESCC
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEEE
Confidence            46799999999999999999987       58999999876533            112333344455578999999876


Q ss_pred             E
Q psy5231          77 V   77 (148)
Q Consensus        77 v   77 (148)
                      +
T Consensus        83 v   83 (239)
T d1lqta2          83 V   83 (239)
T ss_dssp             B
T ss_pred             e
Confidence            5

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.49  E-value=1.5e-07  Score=65.77  Aligned_cols=61  Identities=16%  Similarity=0.077  Sum_probs=47.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCc------------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRC------------EKILIDRLMQKVNEGKIDIKLKHIV   77 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~------------~~~~~~~l~~~l~~~~v~i~~~~~v   77 (148)
                      +|+|||+|++|+.+|..|++.  +.+||++++.+.+.+            ......+....++..|+++++++.+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   77 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEV   77 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCB
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEe
Confidence            669999999999999999765  789999999876532            1233444555566889999988765

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.49  E-value=2.1e-07  Score=68.65  Aligned_cols=35  Identities=26%  Similarity=0.259  Sum_probs=30.2

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKL   50 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~   50 (148)
                      |+|+|||||++|+.+|..|++.+  .+|+++|+++.+
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~i   41 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP   41 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            56699999999999999998765  599999998654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.48  E-value=5.3e-08  Score=70.37  Aligned_cols=36  Identities=19%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|+|||||++|+.+|..|++.|.+|+|+|+.+.+
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~   65 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   65 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            456699999999999999999999999999987654

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=7.7e-07  Score=65.59  Aligned_cols=30  Identities=27%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus        10 VlVVG~G~AGl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2          10 AVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             CEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            499999999999999999999999999874

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.39  E-value=1.3e-07  Score=65.35  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=30.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+.+|..|++.|. +|+|+|+++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~   36 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            57999999999999999999995 79999997765

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=5.8e-07  Score=65.40  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=27.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|..|+-+|..+++.| +|.|+++.+
T Consensus         9 DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~   39 (305)
T d1chua2           9 DVLIIGSGAAGLSLALRLADQH-QVIVLSKGP   39 (305)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTS-CEEEECSSC
T ss_pred             CEEEECccHHHHHHHHHhhcCC-CEEEEECCC
Confidence            4699999999999999999888 899998754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.9e-07  Score=66.90  Aligned_cols=35  Identities=23%  Similarity=0.367  Sum_probs=31.9

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      +|+|||||.+|+-+|..|++.|.+|+|+|+++++.
T Consensus         7 kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           7 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG   41 (449)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            45999999999999999999999999999987663

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.35  E-value=1.7e-07  Score=66.37  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=31.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+.+|..|++.|.+|+|+|+.+.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   35 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            4699999999999999999999999999997654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.34  E-value=2.8e-07  Score=67.89  Aligned_cols=37  Identities=14%  Similarity=0.205  Sum_probs=33.6

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      |+|+|||||.+|+-+|..|++.|.+|+|+|+++++++
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            4459999999999999999999999999999887755

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=2.4e-07  Score=63.75  Aligned_cols=36  Identities=28%  Similarity=0.153  Sum_probs=32.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +|+|||+|.+|+-+|..|++.|++|+|+|+++.+.+
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   42 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCc
Confidence            359999999999999999999999999999887654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.27  E-value=4.7e-07  Score=63.67  Aligned_cols=38  Identities=24%  Similarity=0.204  Sum_probs=33.6

Q ss_pred             ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      -.++|+|||||++|+.+|..|++.|.+|+++++.+++.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG   85 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence            34556999999999999999999999999999987764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.22  E-value=7.1e-07  Score=62.40  Aligned_cols=31  Identities=26%  Similarity=0.387  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|.+|+-+|..|++.|.+|+|++|.
T Consensus         8 kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           8 RVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4599999999999999999999999999984

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.20  E-value=6.2e-05  Score=52.85  Aligned_cols=31  Identities=23%  Similarity=0.439  Sum_probs=28.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||||+.|+|+|...++.|.+|.||+..
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            4699999999999999999999999999863

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.19  E-value=8e-07  Score=62.64  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ++|+|||+|++|+-+|..|++.|.+|+|+|+.+.
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4569999999999999999999999999998654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=7.5e-07  Score=64.97  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=33.7

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      .+++|||||++|+-+|..|++.|.+|+|+|+++.+++
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence            3579999999999999999999999999999887765

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=8e-07  Score=64.46  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=31.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||+|.+|+-+|..|++.|.+|+|+|+++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~   34 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   34 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            3699999999999999999999999999987654

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=2.7e-05  Score=56.71  Aligned_cols=31  Identities=19%  Similarity=0.375  Sum_probs=27.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~   47 (148)
                      +|+|||+|..|+-+|..+++.  +.+|+|+++.
T Consensus         7 DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~   39 (311)
T d1kf6a2           7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKV   39 (311)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCEEEEEECC
Confidence            469999999999999999986  6789999874

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.15  E-value=3.8e-06  Score=61.31  Aligned_cols=65  Identities=12%  Similarity=0.164  Sum_probs=51.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---------------------------------------hHHHH
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---------------------------------------EKILI   57 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------------------------~~~~~   57 (148)
                      +|+|||+|++|+-+|..|.+.|.+|+++|+.+.+.+                                       .+++.
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~~   88 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEIL   88 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHHH
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchHH
Confidence            359999999999999999999999999998543211                                       12455


Q ss_pred             HHHHhHHhcCCc--EEEcCceEEEEe
Q psy5231          58 DRLMQKVNEGKI--DIKLKHIVHKII   81 (148)
Q Consensus        58 ~~l~~~l~~~~v--~i~~~~~v~~i~   81 (148)
                      +.+++..++.++  .+.++++|.++.
T Consensus        89 ~Yl~~~a~~~~L~~~I~f~t~V~~~~  114 (298)
T d1w4xa1          89 RYINFVADKFDLRSGITFHTTVTAAA  114 (298)
T ss_dssp             HHHHHHHHHTTGGGGEECSCCEEEEE
T ss_pred             HHHHHHHHHcCCcccccCCcEEEEEE
Confidence            566666667788  588999999986

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.97  E-value=4.7e-06  Score=58.72  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=31.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+-+|..|++.|. +|+|+|+.+.+
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            57999999999999999999994 99999997765

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.95  E-value=5e-06  Score=59.62  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHhh-cCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN-IAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~   50 (148)
                      +|+|||+|++|+.+|..|++ .|.+|+++|+.+.+
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~   69 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   69 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCC
Confidence            34999999999999999987 59999999987643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.94  E-value=3.6e-06  Score=59.69  Aligned_cols=32  Identities=31%  Similarity=0.393  Sum_probs=29.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|.+|++.|.+|+|+++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            36999999999999999999999999999853

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.87  E-value=4.8e-06  Score=59.57  Aligned_cols=32  Identities=16%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            46999999999999999999999999999865

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.82  E-value=8.4e-06  Score=58.01  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=29.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|.+|++.|.+|+|+++.+
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46999999999999999999999999999854

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.78  E-value=1e-05  Score=58.25  Aligned_cols=32  Identities=19%  Similarity=0.218  Sum_probs=28.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~   48 (148)
                      +|+|||||.+|+-+|..|++.| ++|+|+++.+
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            5699999999999999999999 5799999853

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=1.7e-05  Score=51.98  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=33.7

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      .+...||++    +|||||.+|.+-|..|.+.|.+||++..
T Consensus         8 ~~~l~gkrv----LViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1           8 AHQLKDKRI----LLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             EECCTTCEE----EEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             heeeCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            356788999    9999999999999999999999999965

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.67  E-value=2e-05  Score=57.29  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=29.8

Q ss_pred             eEEEEcCchHHHHHHHHHh-----hcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLS-----NIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~-----~~g~~Vtlv~~~~~~   50 (148)
                      +|+|||||++|+-+|..|+     +.|.+|+|+|+.+.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            4699999999999999997     469999999997654

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.66  E-value=6.6e-05  Score=52.36  Aligned_cols=37  Identities=27%  Similarity=0.329  Sum_probs=31.2

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhh---------------------cCCeEEEEEeCCCC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSN---------------------IAKKVTLIHRNEKL   50 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~---------------------~g~~Vtlv~~~~~~   50 (148)
                      .|++|    +|||+|++|+++|..|.+                     ...+|+++.|+...
T Consensus        38 ~gk~V----vVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          38 SCDTA----VILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             TSSEE----EEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             cCceE----EEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            46777    999999999999999987                     34799999997643

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.63  E-value=2.3e-05  Score=53.94  Aligned_cols=44  Identities=16%  Similarity=0.232  Sum_probs=37.0

Q ss_pred             chh-hhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           2 QYE-FGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         2 ~~~-~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|. ....++||+|    +|||+|.+|+++|..+++.+.+++++.|+..
T Consensus        22 ~~~~~~~~~~gK~V----~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          22 NWPHEPVDFSGQRV----GVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             GCCSSCCCCBTCEE----EEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             cCCCCCCCCCCCEE----EEECCCccHHHHHHHHHhhhccccccccccc
Confidence            453 3346789999    9999999999999999999999999887653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.60  E-value=8.1e-05  Score=46.28  Aligned_cols=61  Identities=16%  Similarity=0.071  Sum_probs=43.2

Q ss_pred             Cchhhhh-hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEc
Q psy5231           1 MQYEFGI-LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKL   73 (148)
Q Consensus         1 ~~~~~g~-~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~   73 (148)
                      |+|..=+ ...||++    +|||||.+|..-|..|.+.|.+|+++....    .++....+.    ..+++++.
T Consensus         1 M~~~Pi~l~l~~k~v----lVvG~G~va~~ka~~ll~~ga~v~v~~~~~----~~~~~~~~~----~~~i~~~~   62 (113)
T d1pjqa1           1 MDHLPIFCQLRDRDC----LIVGGGDVAERKARLLLEAGARLTVNALTF----IPQFTVWAN----EGMLTLVE   62 (113)
T ss_dssp             CCCEEEEECCBTCEE----EEECCSHHHHHHHHHHHHTTBEEEEEESSC----CHHHHHHHT----TTSCEEEE
T ss_pred             CCccceEEEeCCCEE----EEECCCHHHHHHHHHHHHCCCeEEEEeccC----ChHHHHHHh----cCCceeec
Confidence            4443333 4578998    999999999999999999999999997532    233333332    45666653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.59  E-value=2.3e-05  Score=52.33  Aligned_cols=32  Identities=25%  Similarity=0.171  Sum_probs=29.7

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+++|||+|..|.-+|..|++.|++|+++.|.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence            45699999999999999999999999999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.59  E-value=1.6e-06  Score=60.84  Aligned_cols=40  Identities=10%  Similarity=0.024  Sum_probs=35.3

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      ...++++    +|+|||++|+|+|..|++.|++||+++|++.+.
T Consensus       177 ~~~~~~v----vViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         177 GDAEAPR----LIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             GGGTSCC----CHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             cccCCce----eEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            3456777    999999999999999999999999999987753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=4.8e-05  Score=45.75  Aligned_cols=37  Identities=16%  Similarity=0.071  Sum_probs=33.7

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ++||++    +|+|-|-+|+.+|..|.+.|.+|++++.+..
T Consensus         3 ~~~K~v----~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           3 YQGKNV----VIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CTTCCE----EEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             cCCCEE----EEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            578888    9999999999999999999999999987654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.53  E-value=4.5e-05  Score=55.82  Aligned_cols=33  Identities=21%  Similarity=0.184  Sum_probs=30.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +++|||+|..|+-+|..|++.|++|.|+|+...
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~   38 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI   38 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence            469999999999999999999999999998654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.50  E-value=6e-05  Score=55.46  Aligned_cols=32  Identities=25%  Similarity=0.275  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .|+|||+|..|+-+|..|++.|++|.|+|+..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            35999999999999999999999999999964

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=6.6e-05  Score=52.01  Aligned_cols=36  Identities=28%  Similarity=0.285  Sum_probs=29.4

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHh--------------------hc-CCeEEEEEeCCC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLS--------------------NI-AKKVTLIHRNEK   49 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~--------------------~~-g~~Vtlv~~~~~   49 (148)
                      .|++|    +|||+|++|+++|..|.                    +. .++|+++.|+..
T Consensus        38 ~gk~V----vVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          38 SGARA----VVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             CSSEE----EEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             cCceE----EEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            46777    99999999999998886                    33 568999998754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.48  E-value=5.6e-05  Score=49.89  Aligned_cols=32  Identities=22%  Similarity=0.169  Sum_probs=29.5

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+|+|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~   34 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   34 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            34599999999999999999999999999985

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.42  E-value=7.3e-05  Score=55.11  Aligned_cols=35  Identities=23%  Similarity=0.205  Sum_probs=31.2

Q ss_pred             CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        11 gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |.++  +++|||+|..|+-+|..|++.|.+|+++|+.
T Consensus         5 ~~~~--dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           5 GDRV--PALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TCEE--EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCC--CEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4444  5699999999999999999999999999985

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00011  Score=48.14  Aligned_cols=33  Identities=18%  Similarity=0.035  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|+|+|.+|.-+|..|++.|.+|+++.|.++
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            469999999999999999999999999988653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00021  Score=48.57  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|+|+|||+|..|..+|..++..|.+|+++++.++
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            36679999999999999999999999999988643

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.35  E-value=0.0004  Score=44.02  Aligned_cols=48  Identities=19%  Similarity=0.135  Sum_probs=37.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKL   73 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~   73 (148)
                      +|+|+|+|..|..+|..|.+.|.+|+++++.      ++..+++.+   +.++.++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d------~~~~~~~~~---~~~~~vi~   49 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID------KDICKKASA---EIDALVIN   49 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC------HHHHHHHHH---HCSSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCC------hhhhhhhhh---hhhhhhcc
Confidence            4699999999999999999999999999874      444555554   33555543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.23  E-value=2.2e-05  Score=54.13  Aligned_cols=28  Identities=25%  Similarity=0.216  Sum_probs=23.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEE
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLI   44 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv   44 (148)
                      +|+|||+|.+|+-+|..|++.|.+|+++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~   29 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQP   29 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEE
Confidence            4699999999999999999998754433

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.16  E-value=0.00011  Score=49.82  Aligned_cols=33  Identities=18%  Similarity=0.125  Sum_probs=30.2

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|+|||+|..|..+|..++..|.+|+++++.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            567999999999999999999999999998754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.12  E-value=0.00053  Score=43.36  Aligned_cols=32  Identities=22%  Similarity=0.125  Sum_probs=29.2

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+++|+|.|.+|..+|..|.+.|.+|++++..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d   32 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   32 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence            45599999999999999999999999999864

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.03  E-value=0.00036  Score=51.48  Aligned_cols=33  Identities=30%  Similarity=0.319  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +++|||+|..|+-+|..|++.|++|.|+|+...
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            459999999999999999999999999999743

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.02  E-value=0.00033  Score=50.96  Aligned_cols=41  Identities=22%  Similarity=0.263  Sum_probs=31.4

Q ss_pred             ccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         108 TSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       108 ~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ..|++|++|.+||+++..+.+.+..+..+|.+|+.++.+++
T Consensus       281 ~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~~~i  321 (356)
T d1jnra2         281 RMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRFI  321 (356)
T ss_dssp             TBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhcCCccccCccccccccchhHHHHHHHH
Confidence            35788999999999876533455667788999999887763

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.92  E-value=0.00032  Score=47.53  Aligned_cols=32  Identities=28%  Similarity=0.306  Sum_probs=29.1

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++|+|||+|..|.-+|..|++.|.+|+++.|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            34599999999999999999999999999874

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.84  E-value=0.00034  Score=47.44  Aligned_cols=41  Identities=15%  Similarity=-0.093  Sum_probs=32.0

Q ss_pred             ccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231         108 TSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL  148 (148)
Q Consensus       108 ~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l  148 (148)
                      ++++.++||++||+++......+.-|+.+|..||..|.++|
T Consensus       302 ~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~  342 (347)
T d1b5qa1         302 LRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCA  342 (347)
T ss_dssp             HHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999865322345668899999999998764

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=96.77  E-value=0.0011  Score=49.50  Aligned_cols=41  Identities=24%  Similarity=0.107  Sum_probs=33.9

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKL   50 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~   50 (148)
                      +..|+..  +++|||+|..|+-+|..|++.+ .+|.|+|+....
T Consensus        19 ~~~~~ty--D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          19 KVAGKTY--DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             GTTTCEE--EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCee--eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            3445544  5699999999999999999988 599999998643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.0047  Score=39.72  Aligned_cols=31  Identities=26%  Similarity=0.220  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +++|+|.|..|..++..|.+.|.+|++++..
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d   35 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEecc
Confidence            4599999999999999999999999999864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.56  E-value=0.0011  Score=44.20  Aligned_cols=31  Identities=13%  Similarity=0.272  Sum_probs=28.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||+|..|.-+|..|++.|.+|+++.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            4699999999999999999999999999763

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=96.38  E-value=0.0018  Score=47.97  Aligned_cols=41  Identities=22%  Similarity=0.118  Sum_probs=33.3

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKL   50 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~   50 (148)
                      ++.+|..  +++|||+|..|+-+|..|++.+ .+|.|+|+....
T Consensus        12 ~~~~~ty--D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~   53 (385)
T d1cf3a1          12 DVSGRTV--DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYE   53 (385)
T ss_dssp             GTTTCEE--EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCC
T ss_pred             cccCCeE--EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCC
Confidence            4455544  5699999999999999999876 799999997543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.0018  Score=42.71  Aligned_cols=40  Identities=20%  Similarity=0.239  Sum_probs=34.9

Q ss_pred             hhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           4 EFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         4 ~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++++...||++    +|+|+|-+|--++..|.+.|.+++++.|.
T Consensus        11 ~~~~~~~~k~v----lIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          11 RLSFIRPGLRI----LLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             HHTCCCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             HcCCCCCCCEE----EEECCcHHHHHHHHHhcccceEEEeccch
Confidence            35666788888    99999999999999999999999998875

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.28  E-value=0.0029  Score=41.34  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=28.3

Q ss_pred             eEEEE-cCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVI-GGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~Vi-GgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|+ |+|.+|..+|..|++.|++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35899 569999999999999999999998853

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.26  E-value=0.0078  Score=41.74  Aligned_cols=55  Identities=15%  Similarity=0.106  Sum_probs=38.8

Q ss_pred             eEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEE
Q psy5231          17 FTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIK   72 (148)
Q Consensus        17 ~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~   72 (148)
                      +|+|.|| |.+|-.++..|.+.|.+|+.+.|.............+ ..+...+++++
T Consensus         5 KILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~-~~~~~~~~~~~   60 (307)
T d1qyca_           5 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLL-ESFKASGANIV   60 (307)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHH-HHHHTTTCEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHH-HhhccCCcEEE
Confidence            4599997 9999999999999999999999865443333322222 23335667665

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=96.24  E-value=0.0013  Score=48.27  Aligned_cols=31  Identities=29%  Similarity=0.364  Sum_probs=28.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +++|||+|..|+-+|..|++. .+|.|+|+.+
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            459999999999999999986 8999999975

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.14  E-value=0.00086  Score=46.46  Aligned_cols=34  Identities=6%  Similarity=-0.138  Sum_probs=28.7

Q ss_pred             cCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231         109 STNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQ  145 (148)
Q Consensus       109 ~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~  145 (148)
                      .++.|++|++||..++.   .+..|+.+|+.+|.+|.
T Consensus       313 ~~~~p~~~~~G~~~~g~---~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         313 LQRLPGLHLIGNAYKGV---GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             HHTSTTEEECSTTTSCC---SHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCEEEecccccCC---CHHHHHHHHHHHHHHhh
Confidence            46899999999997654   57789999999999874

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.10  E-value=0.0033  Score=40.41  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=29.7

Q ss_pred             ceEEEEc-CchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIG-GGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|+||| .|..|--+|..|.+.|++|+++.+..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            5569999 69999999999999999999998854

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.07  E-value=0.0086  Score=41.88  Aligned_cols=54  Identities=9%  Similarity=0.051  Sum_probs=37.6

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEc
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKL   73 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~   73 (148)
                      |+|.|| |.+|-.++..|.+.|.+|+.+.|+..... ....+. ...+...+++++.
T Consensus         6 ILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~-~~~~~~-~~~~~~~~v~~v~   60 (312)
T d1qyda_           6 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSN-IDKVQM-LLYFKQLGAKLIE   60 (312)
T ss_dssp             EEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSC-HHHHHH-HHHHHTTTCEEEC
T ss_pred             EEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccc-hhHHHH-HhhhccCCcEEEE
Confidence            499996 99999999999999999999998654322 222222 2233356777663

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.92  E-value=0.0063  Score=40.21  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      -+|+|+|+|..|..++.....+|.+|++++.+
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            35699999999999999999999999999875

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.87  E-value=0.0052  Score=39.92  Aligned_cols=31  Identities=19%  Similarity=0.076  Sum_probs=28.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||.|..|.-+|..|.+.|.+|+.+.|+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            3699999999999999999999999998774

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.77  E-value=0.0071  Score=40.52  Aligned_cols=32  Identities=13%  Similarity=0.062  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|||+|.+|..++.....+|..|++++.+.
T Consensus        31 ~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          31 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             EEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            45999999999999999999999999998653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.012  Score=36.14  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=29.1

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      |.|+|||..|..+|....++|.+|.++...+.
T Consensus        14 igIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          14 VMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             EEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             EEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            49999999999999999999999999987543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0085  Score=34.50  Aligned_cols=33  Identities=12%  Similarity=-0.042  Sum_probs=29.8

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|.|+|||.-|..++..-.+.|.+|+++...+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            567999999999999999999999999998644

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.58  E-value=0.0054  Score=41.39  Aligned_cols=31  Identities=19%  Similarity=0.088  Sum_probs=28.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||.|.+|+-+|..|++.|.+|+.++..
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            3599999999999999999999999999763

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0058  Score=40.22  Aligned_cols=38  Identities=18%  Similarity=0.168  Sum_probs=34.4

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +.+..||.+    +|+|-|.+|-.+|..++.+|.+|++.+..
T Consensus        19 ~~~l~Gk~v----~V~GyG~iG~g~A~~~rg~G~~V~v~e~d   56 (163)
T d1li4a1          19 DVMIAGKVA----VVAGYGDVGKGCAQALRGFGARVIITEID   56 (163)
T ss_dssp             CCCCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CceecCCEE----EEeccccccHHHHHHHHhCCCeeEeeecc
Confidence            456778998    99999999999999999999999999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.0098  Score=38.76  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=30.9

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ..|++|    +|+|+|.+|.-++..+..+|.+|+.+++++
T Consensus        26 ~~g~~v----lI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          26 GPGKKV----GIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             STTCEE----EEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CCCCEE----EEECCCCcchhHHHHhhhccccccccccch
Confidence            457777    999999999999888888999999988754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.41  E-value=0.0096  Score=39.72  Aligned_cols=38  Identities=24%  Similarity=0.204  Sum_probs=33.1

Q ss_pred             hhhhcCCcccceEEEEc-CchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIG-GGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +...+||++    +|.| +|-+|.++|..|++.|.+|+++.|.
T Consensus        18 ~~~l~gK~v----lItGasgGIG~~ia~~la~~G~~V~~~~r~   56 (191)
T d1luaa1          18 GGSVKGKKA----VVLAGTGPVGMRSAALLAGEGAEVVLCGRK   56 (191)
T ss_dssp             TSCCTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCCEE----EEECCCHHHHHHHHHHHHhhccchhhcccc
Confidence            445678888    8998 5899999999999999999999986

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.41  E-value=0.0065  Score=40.08  Aligned_cols=39  Identities=21%  Similarity=0.273  Sum_probs=33.9

Q ss_pred             hhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           5 FGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .++...+|++    +|+|+|-+|--++..|.+.+.+|+++.|.
T Consensus        12 ~~~~~~~k~v----lIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          12 LNWLRPNQHV----LILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             TTCCCTTCEE----EEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCCCEE----EEECCcHHHHHHHHHHcccCceeeeccch
Confidence            4566778888    99999999999988888888999999886

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.013  Score=39.21  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=28.9

Q ss_pred             ceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|+|+|| |.+|-.++..|.+.|.+|+++.|+.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            44599995 9999999999999999999999853

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.22  E-value=0.011  Score=38.45  Aligned_cols=35  Identities=26%  Similarity=0.209  Sum_probs=30.7

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..|++|    +|+|+|.+|+-++..+..+|.+|+++++.
T Consensus        25 ~~g~~v----lV~G~G~vG~~~~~~ak~~Ga~vi~v~~~   59 (170)
T d1e3ja2          25 QLGTTV----LVIGAGPIGLVSVLAAKAYGAFVVCTARS   59 (170)
T ss_dssp             CTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEEcccccchhhHhhHhhhcccccccchH
Confidence            456677    99999999999999999999999999874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.22  E-value=0.033  Score=38.84  Aligned_cols=35  Identities=29%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++||.+    +|-||+ -+|.++|..|++.|.+|.+..|+
T Consensus         3 L~gK~a----lITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (260)
T d1zema1           3 FNGKVC----LVTGAGGNIGLATALRLAEEGTAIALLDMN   38 (260)
T ss_dssp             TTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            467777    888875 68999999999999999999874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.12  E-value=0.012  Score=38.07  Aligned_cols=36  Identities=17%  Similarity=0.093  Sum_probs=30.9

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ...|++|    +|+|+|.+|+-++..+..+|.+|+.+.+.
T Consensus        25 ~~~g~~V----lV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          25 ARPGQWV----AISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             CCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEE----EEeeccccHHHHHHHHHHcCCccceecch
Confidence            3457777    99999999999999998999999988764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.11  E-value=0.023  Score=39.55  Aligned_cols=37  Identities=16%  Similarity=0.016  Sum_probs=29.4

Q ss_pred             hhcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           8 LALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +..||.+    +|-||+ -+|.++|..|++.|.+|.+..+++
T Consensus         3 ~L~GK~a----lITGas~GIG~aia~~la~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           3 PLAGKVA----LTTGAGRGIGRGIAIELGRRGASVVVNYGSS   40 (259)
T ss_dssp             TTTTCEE----EETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEE----EEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            3467776    777765 699999999999999999877653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.09  E-value=0.038  Score=38.31  Aligned_cols=32  Identities=22%  Similarity=0.196  Sum_probs=25.7

Q ss_pred             ceEEEE-cCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVI-GGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~Vi-GgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+|++| ||+ -+|.++|..|++.|.+|.+..|+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~   34 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN   34 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            344555 554 69999999999999999999875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.012  Score=38.31  Aligned_cols=36  Identities=19%  Similarity=0.224  Sum_probs=29.8

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      ...|+.|    +|+|+|.+|+-++..+..+|. +|+++++.
T Consensus        24 ~~~gd~V----lI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          24 VTLGHKV----LVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             CCTTCEE----EEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCCCEE----EEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            3456777    999999999999999999987 68887764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.92  E-value=0.016  Score=37.27  Aligned_cols=33  Identities=24%  Similarity=0.183  Sum_probs=27.0

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcC--CeEEEEEeC
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIA--KKVTLIHRN   47 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~   47 (148)
                      +|+|+|||+|.+|..+|..|...+  .++.|+...
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            367799999999999999888765  578888654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.89  E-value=0.041  Score=38.31  Aligned_cols=35  Identities=20%  Similarity=0.126  Sum_probs=30.7

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|.|+ +-+|.++|..|++.|.+|.+..|+
T Consensus         4 L~gK~a----lITGas~GIG~aia~~la~~G~~V~i~~r~   39 (258)
T d1ae1a_           4 LKGTTA----LVTGGSKGIGYAIVEELAGLGARVYTCSRN   39 (258)
T ss_dssp             CTTCEE----EEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            478888    89985 579999999999999999999985

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.80  E-value=0.04  Score=39.51  Aligned_cols=31  Identities=13%  Similarity=0.160  Sum_probs=28.1

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|+|| |.+|-.++..|.+.|.+|+.+.|+.
T Consensus         6 IlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           6 IAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             EEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            499986 9999999999999999999999853

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.79  E-value=0.04  Score=38.03  Aligned_cols=36  Identities=19%  Similarity=0.017  Sum_probs=29.7

Q ss_pred             hhcCCcccceEEEEcC-ch--HHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGG-GN--TAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGg-G~--~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +.+||.+    +|.|+ |.  +|.++|..|++.|.+|.+..|.
T Consensus         3 ~l~gK~~----lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           3 LLDGKRI----LVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTTTCEE----EECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCCEE----EEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3567877    89984 44  8999999999999999998764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.76  E-value=0.015  Score=37.64  Aligned_cols=32  Identities=16%  Similarity=0.054  Sum_probs=29.2

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++|.+||-|..|..+|..|.+.|++|+++.|.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            45699999999999999999999999998774

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.73  E-value=0.021  Score=37.45  Aligned_cols=36  Identities=14%  Similarity=0.073  Sum_probs=29.5

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      ..+|++|    +|+|+|.+|+-++..+...|. +|+.+.+.
T Consensus        25 ~~~g~~V----lI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          25 IEMGSSV----VVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CCTTCCE----EEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCCCEE----EEEcCCcchhhhhhhhhcccccccccccch
Confidence            3457777    999999999999999998886 67777664

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.65  E-value=0.016  Score=38.17  Aligned_cols=37  Identities=19%  Similarity=0.149  Sum_probs=31.2

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +...+||++    +|+|+|-++--++..|.+.+ +|+++.|.
T Consensus        13 ~~~~~~k~v----lIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          13 IGRVKDKNI----VIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             HCCCCSCEE----EEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCCcCCCEE----EEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            445688888    99999999998888888777 89999885

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.61  E-value=0.013  Score=38.53  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=29.8

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~   48 (148)
                      ..|++|    +|+|+|.+|.-++..+..+|. +|+++++.+
T Consensus        27 ~~G~~V----lV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          27 FAGKTV----VIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CBTCEE----EEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCCEE----EEECCCccchhheeccccccccccccccccc
Confidence            456666    999999999999999988996 788888743

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.018  Score=39.90  Aligned_cols=40  Identities=20%  Similarity=-0.003  Sum_probs=29.2

Q ss_pred             ccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231         108 TSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY  147 (148)
Q Consensus       108 ~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~  147 (148)
                      ..+..++||.+||.+....+..+.-|+.+|.+||..|.++
T Consensus       407 ~~~~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~Il~~  446 (449)
T d2dw4a2         407 APQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQ  446 (449)
T ss_dssp             ---CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEEcCCcCCCCceehHHHHHHHHHHHHHHHHH
Confidence            5677899999999865431235677899999999999764

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.56  E-value=0.021  Score=38.47  Aligned_cols=38  Identities=18%  Similarity=0.103  Sum_probs=32.9

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |.+..|+++    .|||-|.+|-++|..|..+|.+|..+.+.
T Consensus        38 g~el~gk~v----gIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          38 GREVRDQVV----GVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             BCCGGGSEE----EEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CccccCCeE----EEecccccchhHHHhHhhhcccccccCcc
Confidence            445678888    99999999999999999999999888653

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.027  Score=37.15  Aligned_cols=39  Identities=15%  Similarity=0.185  Sum_probs=32.1

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~   48 (148)
                      |....+|++    +|+|+|-+|--++..|.+.|. +++++.|..
T Consensus        13 ~~~l~~k~v----lIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          13 GFDIKGKTM----VLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             TCCCTTCEE----EEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCcCCCEE----EEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            455677888    999999999999999988865 788888864

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.53  E-value=0.019  Score=37.31  Aligned_cols=35  Identities=26%  Similarity=0.213  Sum_probs=30.0

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      ..++++    +|||+|.+|..++..|...|. +++++.|.
T Consensus        22 l~~~~i----lviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTV----LVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             CTTCEE----EEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cccCeE----EEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            456777    999999999999999999986 68888775

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.53  E-value=0.053  Score=37.78  Aligned_cols=37  Identities=19%  Similarity=0.071  Sum_probs=30.5

Q ss_pred             hhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           8 LALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ..+||.+    +|-|| +-+|.++|..|++.|.+|.+..|+.
T Consensus         4 dL~gK~a----lITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           4 DLEGKVV----VITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGTTCEE----EETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEE----EEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3577777    77765 5799999999999999999998863

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.47  E-value=0.027  Score=35.89  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=26.7

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~   49 (148)
                      +|+|||+|.+|..+|..|...+  .++.|+...+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            5699999999999999998874  58999986554

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.47  E-value=0.027  Score=40.33  Aligned_cols=37  Identities=22%  Similarity=0.080  Sum_probs=32.8

Q ss_pred             hhcCCcccceEEEEc-CchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           8 LALIKPVIIFTDVIG-GGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         8 ~~~gk~v~~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +++||+|    +|.| +|.+|..++..|.+.|.+|..+.|..
T Consensus         5 ~~~~KkI----LVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           5 FWQGKRV----FVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             HHTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hhCCCEE----EEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4788998    9998 57999999999999999999998853

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.41  E-value=0.027  Score=35.85  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=26.1

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCC
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~   48 (148)
                      ++|+|||+|.+|..+|..|+..+. ++.++...+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            356999999999999998887753 777776543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.39  E-value=0.021  Score=36.60  Aligned_cols=31  Identities=10%  Similarity=0.203  Sum_probs=26.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~   47 (148)
                      +|+|||+|.+|..+|..|+..+  .++.|+.+.
T Consensus         7 KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           7 KVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            3499999999999999999876  689999764

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.39  E-value=0.024  Score=38.17  Aligned_cols=39  Identities=18%  Similarity=0.151  Sum_probs=33.2

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |.+..||++    .|||-|.+|-++|..|..+|.+|..+.+..
T Consensus        40 ~~~l~~ktv----gIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          40 GKELGQQTV----GVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             CCCGGGSEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccccceee----eeeecccccccccccccccceeeeccCCcc
Confidence            344566777    999999999999999999999999988743

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.38  E-value=0.023  Score=36.36  Aligned_cols=33  Identities=18%  Similarity=0.166  Sum_probs=27.2

Q ss_pred             cceEEEEcCchHHHHHHHHHhhcC--CeEEEEEeC
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNIA--KKVTLIHRN   47 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~   47 (148)
                      |.+|+|||+|.+|..+|..|...+  .++.|+...
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            457899999999999998888764  578888754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.028  Score=36.41  Aligned_cols=37  Identities=19%  Similarity=0.132  Sum_probs=30.7

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ...|++|    +|+|+|.+|.-++..+..+|.+++++.+++
T Consensus        28 ~~~G~~V----lI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          28 AGPGKKV----GVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CCTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEE----EEeccchHHHHHHHHhhcccccchhhccch
Confidence            3456777    999999999999988888999998877643

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.022  Score=37.46  Aligned_cols=40  Identities=23%  Similarity=0.175  Sum_probs=34.7

Q ss_pred             hhhhhcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           5 FGILALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++....||++    +|||.+. +|.-+|..|.+.|..||+++...
T Consensus        31 y~i~l~GK~v----~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          31 YNIDTFGLNA----VVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             TTCCCTTCEE----EEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cCcccccceE----EEEeccccccHHHHHHHHHhhcccccccccc
Confidence            4566789999    9999886 89999999999999999998654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.29  E-value=0.079  Score=36.77  Aligned_cols=35  Identities=20%  Similarity=0.079  Sum_probs=30.3

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|-||+ -+|..+|..|++.|.+|.+..|+
T Consensus         6 L~GK~a----lITGas~GIG~aia~~la~~Ga~V~~~~r~   41 (259)
T d2ae2a_           6 LEGCTA----LVTGGSRGIGYGIVEELASLGASVYTCSRN   41 (259)
T ss_dssp             CTTCEE----EEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            468887    888876 69999999999999999999875

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.14  E-value=0.029  Score=37.19  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=32.4

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ..||++    .|||-|.+|-.+|..+..+|.+|+.+.+..
T Consensus        40 l~gk~v----gIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          40 IQGEKV----AVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CTTCEE----EEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCceE----EEeccccccccceeeeeccccccccccccc
Confidence            467777    999999999999999999999999998754

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=94.13  E-value=0.091  Score=33.32  Aligned_cols=48  Identities=23%  Similarity=0.228  Sum_probs=34.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKL   73 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~   73 (148)
                      +|.+||+|..|--+|.-|.+.+ .+|.++.|+      ++..+++.+   +.++....
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~------~~~~~~l~~---~~~~~~~~   50 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG------AEKRERLEK---ELGVETSA   50 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS------HHHHHHHHH---HTCCEEES
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC------hhHHHHhhh---hccccccc
Confidence            3589999999999999887776 888887664      334455554   45676654

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.13  E-value=0.065  Score=37.15  Aligned_cols=37  Identities=14%  Similarity=-0.013  Sum_probs=31.3

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ++||.+    +|-||+ -+|.++|..|++.|.+|.++.|+.+
T Consensus         3 l~gK~v----lITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           3 LTNKNV----IFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CTTCEE----EEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCEE----EEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            467887    888877 5999999999999999999988643

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.025  Score=37.32  Aligned_cols=40  Identities=18%  Similarity=0.077  Sum_probs=35.0

Q ss_pred             hhhhhcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           5 FGILALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         5 ~g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +++...||++    +|||.+. +|.-+|..|.+.|..|++++...
T Consensus        33 ~~i~l~Gk~v----vVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          33 TGVPIAGRHA----VVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             TTCCCTTCEE----EEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             hCcccccceE----EEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            4667889999    9999875 89999999999999999998754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.07  E-value=0.02  Score=37.47  Aligned_cols=38  Identities=18%  Similarity=0.163  Sum_probs=34.3

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +.+..||++    +|+|=|.+|--+|..++.+|.+|++.|..
T Consensus        18 ~~~laGk~v----vV~GYG~vGrG~A~~~rg~Ga~V~V~E~D   55 (163)
T d1v8ba1          18 DFLISGKIV----VICGYGDVGKGCASSMKGLGARVYITEID   55 (163)
T ss_dssp             CCCCTTSEE----EEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             CceecCCEE----EEecccccchhHHHHHHhCCCEEEEEecC
Confidence            345678898    99999999999999999999999999874

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=94.06  E-value=0.034  Score=35.83  Aligned_cols=32  Identities=16%  Similarity=0.073  Sum_probs=25.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~   48 (148)
                      +|+|||+|.+|..+|..|+..+ .++.|+...+
T Consensus         9 KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           9 KVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            4499999999999998888766 4788886544

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.05  E-value=0.039  Score=34.95  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=27.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEK   49 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~   49 (148)
                      +|+|||+|.+|..+|..|...+  .++.|+...+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            4699999999999999998875  68999986543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.94  E-value=0.029  Score=36.18  Aligned_cols=31  Identities=19%  Similarity=0.124  Sum_probs=28.3

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||-|..|..+|..|.+.|++|+++.|.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3599999999999999999999999998764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.93  E-value=0.031  Score=37.11  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=25.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|+|||.|.+|+-+|..++ .|.+|+.+.-.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din   31 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDIL   31 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSC
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECC
Confidence            3599999999999999887 59999998753

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.09  Score=36.23  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=28.5

Q ss_pred             cCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          10 LIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .||.+    +|-||+ -+|.++|..|++.|.+|.+..|.
T Consensus         6 ~Gkv~----lITGas~GIG~~ia~~la~~G~~V~l~~r~   40 (244)
T d1yb1a_           6 TGEIV----LITGAGHGIGRLTAYEFAKLKSKLVLWDIN   40 (244)
T ss_dssp             TTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEE----EEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            46665    777776 59999999999999999999885

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.064  Score=37.21  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=29.6

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|-||+ -+|.++|..|++.|.+|.+..|+
T Consensus         9 L~gK~a----lITGas~GIG~aia~~la~~Ga~V~~~~r~   44 (255)
T d1fmca_           9 LDGKCA----IITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             CTTCEE----EETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            567877    777764 79999999999999999999874

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.85  E-value=0.034  Score=35.45  Aligned_cols=31  Identities=23%  Similarity=0.087  Sum_probs=27.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||.|..|.-+|..|.+.|.+|+++.+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~   32 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEG   32 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCc
Confidence            4699999999999999999999999887654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.84  E-value=0.027  Score=36.70  Aligned_cols=34  Identities=26%  Similarity=0.198  Sum_probs=29.4

Q ss_pred             cCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231          10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      ++++|    +|+|+|-+|--.+..|.+.|. +++++.|+
T Consensus        16 ~~~~v----lIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKV----IVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCE----EEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeE----EEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            56667    999999999999999999984 78888775

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.83  E-value=0.042  Score=38.12  Aligned_cols=37  Identities=19%  Similarity=-0.006  Sum_probs=31.5

Q ss_pred             hcCCcccceEEEEcC-c--hHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           9 ALIKPVIIFTDVIGG-G--NTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G--~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      .+||.+    +|.|+ |  -+|..+|..|++.|.+|++..|.++
T Consensus         3 L~gK~a----lITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           3 LKGKKG----LIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTCEE----EEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEE----EEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468888    99996 3  4999999999999999999998654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=93.82  E-value=0.033  Score=37.32  Aligned_cols=38  Identities=16%  Similarity=0.092  Sum_probs=33.3

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +.+..|+++    .|||-|.+|-++|..+..+|.+|..+.+.
T Consensus        44 ~~eL~gktv----gIiG~G~IG~~va~~l~~fg~~v~~~d~~   81 (193)
T d1mx3a1          44 AARIRGETL----GIIGLGRVGQAVALRAKAFGFNVLFYDPY   81 (193)
T ss_dssp             CCCCTTCEE----EEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             ceeeeCceE----EEeccccccccceeeeeccccceeeccCc
Confidence            445677888    99999999999999999999999988764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.097  Score=36.24  Aligned_cols=35  Identities=20%  Similarity=-0.003  Sum_probs=30.2

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++||.+    +|-||+ -+|.++|..|++.|.+|.+..|+
T Consensus         8 lk~Kv~----lITGas~GIG~aiA~~la~~G~~Vv~~~r~   43 (257)
T d1xg5a_           8 WRDRLA----LVTGASGGIGAAVARALVQQGLKVVGCART   43 (257)
T ss_dssp             GTTCEE----EEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            678887    888765 88999999999999999998874

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.058  Score=33.41  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=27.2

Q ss_pred             ceEEEEcCc-----------hHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGG-----------NTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG-----------~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|+|+|+|           ..+..++..|.+.|.++.++...+
T Consensus         5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP   48 (121)
T d1a9xa4           5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP   48 (121)
T ss_dssp             CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred             CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence            345999998           467788899999999999997644

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.76  E-value=0.029  Score=35.91  Aligned_cols=31  Identities=29%  Similarity=0.338  Sum_probs=25.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~   47 (148)
                      +|.|||+|.+|..+|..|...+  .++.|+...
T Consensus         8 KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           8 RVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            3499999999999999998765  578888764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.73  E-value=0.049  Score=37.80  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=31.0

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++||.+    +|-||+ -+|..+|..|++.|.+|.+..|+.
T Consensus         7 l~gK~a----lITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_           7 FVNKTI----IVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             CTTEEE----EEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            567877    888876 599999999999999999999864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.73  E-value=0.034  Score=36.36  Aligned_cols=31  Identities=16%  Similarity=0.111  Sum_probs=28.6

Q ss_pred             EEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |.|||-|..|..+|..|.+.|.+|+++.|.+
T Consensus         5 Ig~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           5 IALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             EEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            4999999999999999999999999998753

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.60  E-value=0.082  Score=36.80  Aligned_cols=35  Identities=29%  Similarity=0.120  Sum_probs=29.0

Q ss_pred             hcCCcccceEEEEc-CchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIG-GGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|-| ++-+|..+|..|++.|.+|.+..++
T Consensus        16 L~gK~~----lITGas~GIG~aia~~la~~Ga~Vvi~~~~   51 (272)
T d1g0oa_          16 LEGKVA----LVTGAGRGIGREMAMELGRRGCKVIVNYAN   51 (272)
T ss_dssp             CTTCEE----EETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            457776    7777 4588999999999999999988775

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.57  E-value=0.051  Score=35.00  Aligned_cols=31  Identities=16%  Similarity=-0.082  Sum_probs=25.6

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCC--eEEEEEe
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAK--KVTLIHR   46 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~   46 (148)
                      |+|.|||.|..|.-+|..|.+.|.  +|+.+.+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~   34 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            456999999999999999999885  5555554

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.54  E-value=0.04  Score=35.92  Aligned_cols=31  Identities=26%  Similarity=0.304  Sum_probs=28.1

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.|||-|..|..+|..|.+.|.+|+++.|.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            3589999999999999999999999988763

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.084  Score=36.76  Aligned_cols=33  Identities=18%  Similarity=0.217  Sum_probs=26.5

Q ss_pred             CCcccceEEEE--cCchHHHHHHHHHhhc-CCeEEEEEeC
Q psy5231          11 IKPVIIFTDVI--GGGNTAVEEALYLSNI-AKKVTLIHRN   47 (148)
Q Consensus        11 gk~v~~~v~Vi--GgG~~g~e~A~~l~~~-g~~Vtlv~~~   47 (148)
                      ||+|    +||  |++-+|.++|..|++. |.+|.+..|+
T Consensus         2 g~rV----AlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~   37 (275)
T d1wmaa1           2 GIHV----ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD   37 (275)
T ss_dssp             CCCE----EEESSCSSHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCeE----EEECCCCCHHHHHHHHHHHHhCCCEEEEEECC
Confidence            6666    888  5557788899999876 8999999885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.52  E-value=0.027  Score=36.22  Aligned_cols=35  Identities=14%  Similarity=0.090  Sum_probs=29.6

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+|++|    +|.|+|.+|+-++..+..+|.+|+.+.++
T Consensus        26 ~~g~~v----lv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          26 KPGEWV----AIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             CTTCEE----EEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCEE----EEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            456777    99999999999988888999998888653

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.43  E-value=0.057  Score=37.02  Aligned_cols=31  Identities=16%  Similarity=0.107  Sum_probs=28.0

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|.|| |.+|-.++..|.+.|.+|+.+.|.+
T Consensus         4 IlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           4 ILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            699997 9999999999999999999888754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.074  Score=34.41  Aligned_cols=35  Identities=14%  Similarity=0.054  Sum_probs=28.8

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+|++|    +|.|+ |.+|.-+...+...|.+|+.+.++
T Consensus        27 ~~g~~V----lV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          27 KAGESV----LVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             CTTCEE----EEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEE----EEEeccccccccccccccccCccccccccc
Confidence            456677    99996 999998888888889999888764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.33  E-value=0.21  Score=33.85  Aligned_cols=34  Identities=24%  Similarity=0.120  Sum_probs=28.8

Q ss_pred             CCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          11 IKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        11 gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ||++    +|.|| +-+|.++|..|++.|.+|.++.+.+
T Consensus         2 gK~v----lITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           2 ARRV----LVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCEE----EEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCEE----EEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5666    99987 4799999999999999999987743

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.30  E-value=0.046  Score=35.59  Aligned_cols=35  Identities=9%  Similarity=0.095  Sum_probs=28.4

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      ...|++|    +|+|+|.+|+-++..+...|.++.++..
T Consensus        26 ~~~g~~V----lI~G~G~iG~~~~~~ak~~g~~~v~~~~   60 (174)
T d1f8fa2          26 VTPASSF----VTWGAGAVGLSALLAAKVCGASIIIAVD   60 (174)
T ss_dssp             CCTTCEE----EEESCSHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             CCCCCEE----EEeCCCHHHhhhhhcccccccceeeeec
Confidence            4457777    9999999999999999888887765543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.29  E-value=0.031  Score=34.62  Aligned_cols=46  Identities=11%  Similarity=0.163  Sum_probs=32.3

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEc
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKL   73 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~   73 (148)
                      |+++|+|.|..|.+++..|.  +.+|.+++..+.      ..+.+.    ..|+.++.
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~------~~~~~~----~~~~~~i~   46 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDEN------VRKKVL----RSGANFVH   46 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTT------HHHHHH----HTTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchH------HHHHHH----hcCccccc
Confidence            46699999999999999995  456888876432      233333    46776664

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.048  Score=37.50  Aligned_cols=37  Identities=19%  Similarity=0.103  Sum_probs=31.0

Q ss_pred             hcCCcccceEEEEcCch---HHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           9 ALIKPVIIFTDVIGGGN---TAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~---~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ..||.+    +|-||+-   +|..+|..|++.|.+|++..|+++
T Consensus         3 L~gK~~----lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRI----LVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEE----EECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEE----EEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            467777    8888764   788999999999999999988754

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.22  E-value=0.1  Score=35.97  Aligned_cols=36  Identities=22%  Similarity=0.097  Sum_probs=30.7

Q ss_pred             hhcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..+||.+    +|-||+ -+|..+|..|++.|.+|.+..|+
T Consensus         2 ~l~gK~~----lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           2 DLRGRVA----LVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             CCTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3567887    888875 68999999999999999999875

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.09  E-value=0.045  Score=36.06  Aligned_cols=37  Identities=22%  Similarity=0.018  Sum_probs=32.3

Q ss_pred             hhhhcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEe
Q psy5231           6 GILALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      |....||++    +|||-+ .+|.-+|..|++.|..||+++.
T Consensus        24 g~~l~GK~v----vVIGrS~iVG~Pla~lL~~~gaTVt~~~~   61 (171)
T d1edza1          24 GNRLYGKKC----IVINRSEIVGRPLAALLANDGATVYSVDV   61 (171)
T ss_dssp             TCTTTTCEE----EEECCCTTTHHHHHHHHHTTSCEEEEECS
T ss_pred             cCCCCCCEE----EEECCccccHHHHHHHHHHCCCEEEEecc
Confidence            557889999    999966 5799999999999999998864

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.064  Score=33.52  Aligned_cols=33  Identities=15%  Similarity=0.199  Sum_probs=27.4

Q ss_pred             ceEEEEcCch-----------HHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGGGN-----------TAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGgG~-----------~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|+|+|+|+           .+..++..|.+.|.++.++...+
T Consensus         8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP   51 (127)
T d1a9xa3           8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP   51 (127)
T ss_dssp             CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred             CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence            5569999985           67788899999999999997654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.04  E-value=0.15  Score=35.02  Aligned_cols=34  Identities=29%  Similarity=0.226  Sum_probs=28.0

Q ss_pred             cCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          10 LIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+|-+    +|.||+ -+|..+|..|++.|.+|.+..|+
T Consensus         9 enKva----lITGas~GIG~a~a~~la~~Ga~V~~~~r~   43 (251)
T d2c07a1           9 ENKVA----LVTGAGRGIGREIAKMLAKSVSHVICISRT   43 (251)
T ss_dssp             SSCEE----EEESTTSHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             CCCEE----EEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            46666    777764 78999999999999999999874

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.055  Score=37.19  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=28.8

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEe
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHR   46 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~   46 (148)
                      .++.+|    +|+|.|-+|.++|..|++.|. +++++..
T Consensus        28 L~~~~V----liiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          28 LKDSRV----LIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HHHCEE----EEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HhCCCE----EEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            345666    999999999999999999985 7788864

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.95  E-value=0.11  Score=36.00  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=29.6

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|-||+ -+|.++|..|++.|.+|.+..|+
T Consensus         6 LkgK~a----lVTGas~GIG~aiA~~la~~Ga~V~~~~r~   41 (259)
T d1xq1a_           6 LKAKTV----LVTGGTKGIGHAIVEEFAGFGAVIHTCARN   41 (259)
T ss_dssp             CTTCEE----EETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            467777    777765 68999999999999999999875

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.84  E-value=0.046  Score=36.30  Aligned_cols=33  Identities=18%  Similarity=-0.021  Sum_probs=26.8

Q ss_pred             cceEEEEcC-chHHHHHHHHHhhcCC--eEEEEEeC
Q psy5231          15 IIFTDVIGG-GNTAVEEALYLSNIAK--KVTLIHRN   47 (148)
Q Consensus        15 ~~~v~ViGg-G~~g~e~A~~l~~~g~--~Vtlv~~~   47 (148)
                      +|+|+|.|| |.+|-.++..|.+.+.  +|+.+.|+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~   37 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   37 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            466799998 9999999999999987  55555554

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.83  E-value=0.068  Score=34.08  Aligned_cols=31  Identities=16%  Similarity=0.142  Sum_probs=27.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|.+||.|..|.-+|.-|.+.++++++..|.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            3599999999999999999999999988764

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=92.78  E-value=0.063  Score=36.17  Aligned_cols=33  Identities=15%  Similarity=-0.037  Sum_probs=30.0

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEE
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIH   45 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~   45 (148)
                      .+|++|    +|-|-|.+|..+|..|.+.|.+|++..
T Consensus        25 L~gk~v----~IqG~G~VG~~~A~~L~~~Gakvvv~d   57 (201)
T d1c1da1          25 LDGLTV----LVQGLGAVGGSLASLAAEAGAQLLVAD   57 (201)
T ss_dssp             STTCEE----EEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEec
Confidence            678888    999999999999999999999998664

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.17  Score=35.03  Aligned_cols=35  Identities=26%  Similarity=0.228  Sum_probs=31.0

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|.||+ -+|.++|..|++.|.+|.++.|+
T Consensus        12 L~GK~a----lITGassGIG~aiA~~la~~G~~Vil~~r~   47 (269)
T d1xu9a_          12 LQGKKV----IVTGASKGIGREMAYHLAKMGAHVVVTARS   47 (269)
T ss_dssp             GTTCEE----EESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCEE----EEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            678888    888876 59999999999999999999985

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.67  E-value=0.091  Score=33.45  Aligned_cols=32  Identities=31%  Similarity=0.472  Sum_probs=27.1

Q ss_pred             eEEEEcC-chHHHHHHHHHhhcC--CeEEEEEeCC
Q psy5231          17 FTDVIGG-GNTAVEEALYLSNIA--KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGg-G~~g~e~A~~l~~~g--~~Vtlv~~~~   48 (148)
                      +|+|||+ |.+|..+|..|...+  .++.|+.+.+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            4699995 999999999998876  6899998754

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=92.54  E-value=0.079  Score=35.08  Aligned_cols=38  Identities=11%  Similarity=0.077  Sum_probs=32.7

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ....++++    .|+|.|.+|.++|..|..+|.+|..+.+..
T Consensus        40 ~~l~~~~v----giiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          40 YDLEAMHV----GTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             CCCTTCEE----EEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             eeccccce----eeccccccchhhhhhhhccCceEEEEeecc
Confidence            34457777    999999999999999999999999988753

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.50  E-value=0.2  Score=34.68  Aligned_cols=35  Identities=17%  Similarity=0.124  Sum_probs=29.3

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|-||+ -+|..+|..|++.|.+|.++.|+
T Consensus         4 L~gKva----lITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (268)
T d2bgka1           4 LQDKVA----IITGGAGGIGETTAKLFVRYGAKVVIADIA   39 (268)
T ss_dssp             TTTCEE----EEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            467777    777754 68999999999999999999874

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=92.49  E-value=0.091  Score=34.07  Aligned_cols=31  Identities=16%  Similarity=0.214  Sum_probs=26.2

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCC--eEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAK--KVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~   47 (148)
                      +|+|||+|.+|..+|..|...+.  ++.|+...
T Consensus        22 KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          22 KITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            45999999999999999988764  78888754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.47  E-value=0.13  Score=34.21  Aligned_cols=36  Identities=19%  Similarity=0.115  Sum_probs=27.2

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      ...|+.|    +|+|+|++|+-++..+...|. +|+++...
T Consensus        23 v~~G~tV----lV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          23 VGPGSTV----YVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             CCTTCEE----EEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCCCEE----EEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            3457777    999999999888888777765 66666653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.41  E-value=0.069  Score=36.80  Aligned_cols=38  Identities=21%  Similarity=0.078  Sum_probs=31.1

Q ss_pred             hhcCCcccceEEEEcCc---hHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           8 LALIKPVIIFTDVIGGG---NTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG---~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      ..+||.+    +|-|++   -+|..+|..|++.|.+|.+..|.++
T Consensus         5 ~L~gK~a----lITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           5 DLSGKKA----LVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             CCTTCEE----EEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEE----EEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            3578888    999964   4899999999999999988777543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.39  E-value=0.15  Score=35.49  Aligned_cols=35  Identities=20%  Similarity=0.223  Sum_probs=29.4

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++||.+    +|.||+ -+|..+|..|++.|.+|.+..|+
T Consensus         3 L~gK~a----lVTGas~GIG~aia~~la~~Ga~V~l~~r~   38 (272)
T d1xkqa_           3 FSNKTV----IITGSSNGIGRTTAILFAQEGANVTITGRS   38 (272)
T ss_dssp             TTTCEE----EETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            567777    777764 78999999999999999999875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.27  E-value=0.073  Score=34.79  Aligned_cols=37  Identities=14%  Similarity=0.105  Sum_probs=30.5

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNE   48 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~   48 (148)
                      ...|+.|    +|+|.|.+|+-....+...| .+|+.++..+
T Consensus        27 ~~~g~tV----lI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          27 VKPGSTC----VVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             CCTTCEE----EEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCCEE----EEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            3456666    99999999999999999998 5788887643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.25  E-value=0.085  Score=34.91  Aligned_cols=38  Identities=18%  Similarity=0.199  Sum_probs=32.9

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +..++++    .|+|-|.+|-++|..+..+|.+|..+.+...
T Consensus        41 ~l~~~~v----giiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          41 EARGKKL----GIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             CSTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccceEE----EEeecccchhhhhhhcccccceEeecccccc
Confidence            4567777    9999999999999999999999999987543

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.25  E-value=0.072  Score=37.97  Aligned_cols=31  Identities=29%  Similarity=0.292  Sum_probs=27.1

Q ss_pred             eEEEEcCchHHHHHHHHHhh----cCCeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSN----IAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~----~g~~Vtlv~~~   47 (148)
                      +|+|||+|+.|+-+|..+++    .|.+|.|+++.
T Consensus        23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            46999999999999998875    68999999973

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.91  E-value=0.15  Score=35.54  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=28.8

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++||.+    +|-||+ -+|..+|..|++.|.+|.+..|+
T Consensus         2 L~gK~a----lITGas~GIG~aia~~la~~Ga~V~~~~r~   37 (274)
T d1xhla_           2 FSGKSV----IITGSSNGIGRSAAVIFAKEGAQVTITGRN   37 (274)
T ss_dssp             CTTCEE----EETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            356776    777764 68999999999999999999875

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.12  Score=35.14  Aligned_cols=35  Identities=14%  Similarity=0.086  Sum_probs=29.8

Q ss_pred             cCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          10 LIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +||.+    +|-||+ -+|..+|..|++.|.+|.++.|++
T Consensus         4 kGKva----lITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           4 KGLVA----VITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             TTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            57777    788765 689999999999999999999864

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.44  Score=33.60  Aligned_cols=29  Identities=21%  Similarity=0.318  Sum_probs=25.8

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEEEe
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      |+|.|| |.+|-.++..|.+.|.+|+++.|
T Consensus         3 iLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            578865 79999999999999999999875

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.83  E-value=0.095  Score=34.60  Aligned_cols=37  Identities=19%  Similarity=0.098  Sum_probs=31.4

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ....|+.+    .|+|.|.+|-+.|..+..+|.+|..+.+.
T Consensus        40 ~~l~~k~v----giiG~G~IG~~va~~~~~fg~~v~~~d~~   76 (184)
T d1ygya1          40 TEIFGKTV----GVVGLGRIGQLVAQRIAAFGAYVVAYDPY   76 (184)
T ss_dssp             CCCTTCEE----EEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             ccccceee----eeccccchhHHHHHHhhhccceEEeecCC
Confidence            34556676    99999999999999999999999888653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=91.83  E-value=0.13  Score=35.47  Aligned_cols=37  Identities=24%  Similarity=0.091  Sum_probs=31.0

Q ss_pred             hhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           8 LALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .+.||.+    +|-|| +-+|.++|..|++.|.+|.+..|++
T Consensus         2 ~l~GK~a----lITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           2 LFAGKGV----LVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             TTTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             ccCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3567877    88874 5889999999999999999998864

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.83  E-value=0.1  Score=36.41  Aligned_cols=35  Identities=11%  Similarity=-0.110  Sum_probs=30.3

Q ss_pred             hcCCcccceEEEEcCc---hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG---NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG---~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|-|++   -+|..+|..|++.|.+|.+..|.
T Consensus         6 L~gK~a----lVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           6 LRGKRA----FIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CTTCEE----EEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCCCEE----EEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            578888    999975   49999999999999999988764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.82  E-value=0.21  Score=29.36  Aligned_cols=50  Identities=20%  Similarity=0.239  Sum_probs=36.1

Q ss_pred             eEEEEcCchHHHHH-HHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCc
Q psy5231          17 FTDVIGGGNTAVEE-ALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus        17 ~v~ViGgG~~g~e~-A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      ++-+||-|-+|+-. |..|.+.|.+|+--.+..     ....+++.    +.|++++.+.
T Consensus        10 ~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~-----~~~~~~L~----~~Gi~v~~g~   60 (96)
T d1p3da1          10 QIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD-----GVVTQRLA----QAGAKIYIGH   60 (96)
T ss_dssp             EEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC-----SHHHHHHH----HTTCEEEESC
T ss_pred             EEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC-----ChhhhHHH----HCCCeEEECC
Confidence            33899888888765 999999999999887542     23334454    4788887544

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.74  E-value=0.12  Score=33.72  Aligned_cols=36  Identities=14%  Similarity=0.092  Sum_probs=28.6

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCe-EEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKK-VTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~   47 (148)
                      ...|+.|    +|+|+|.+|+-++..+...|.+ |++.+..
T Consensus        26 v~~G~~V----lV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          26 VTPGSTC----AVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             CCTTCEE----EEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCCEE----EEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            4557777    9999999999999999999975 5555543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.74  E-value=0.34  Score=32.98  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=23.2

Q ss_pred             ceEEEE-cC-chHHHHHHHHHhhcCCe-------EEEEEeC
Q psy5231          16 IFTDVI-GG-GNTAVEEALYLSNIAKK-------VTLIHRN   47 (148)
Q Consensus        16 ~~v~Vi-Gg-G~~g~e~A~~l~~~g~~-------Vtlv~~~   47 (148)
                      |+|++| |+ +-+|.++|..|++.|.+       |.+..|.
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~   41 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT   41 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC
Confidence            344555 65 46889999999999987       6666653

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.74  E-value=0.11  Score=35.57  Aligned_cols=35  Identities=11%  Similarity=0.085  Sum_probs=30.3

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++||.+    +|.||+ -+|.+.|..|++.|.+|.+..|+
T Consensus         3 l~gK~a----lItGas~GIG~aia~~l~~~G~~V~~~~r~   38 (241)
T d2a4ka1           3 LSGKTI----LVTGAASGIGRAALDLFAREGASLVAVDRE   38 (241)
T ss_dssp             TTTCEE----EEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            467777    888876 59999999999999999999875

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.73  E-value=0.1  Score=32.83  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=25.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~   47 (148)
                      +|+|||+|.+|..+|..|...+  .++.|+...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            4699999999999998887664  688888754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.49  E-value=0.14  Score=33.15  Aligned_cols=31  Identities=16%  Similarity=0.285  Sum_probs=26.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~   47 (148)
                      +|.|||+|.+|..+|..|...+  .++.|+...
T Consensus        21 KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          21 KITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4599999999999999998875  588888654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.46  E-value=0.35  Score=33.16  Aligned_cols=29  Identities=24%  Similarity=0.186  Sum_probs=24.3

Q ss_pred             EEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          19 DVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        19 ~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +|-||+ -+|..+|..|++.|.+|.+..|+
T Consensus         6 lITGas~GIG~aia~~la~~Ga~V~i~~r~   35 (257)
T d2rhca1           6 LVTGATSGIGLEIARRLGKEGLRVFVCARG   35 (257)
T ss_dssp             EEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            455654 68999999999999999999875

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.33  E-value=0.14  Score=35.87  Aligned_cols=36  Identities=17%  Similarity=0.135  Sum_probs=30.2

Q ss_pred             hcCCcccceEEEEc-CchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIG-GGNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++||.+    +|-| ++-+|..+|..|++.|.+|++..|+.
T Consensus        23 l~gK~a----lITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          23 FQGKVA----FITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            567777    7777 46899999999999999999999853

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.30  E-value=0.095  Score=33.95  Aligned_cols=35  Identities=9%  Similarity=0.042  Sum_probs=28.5

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..|++|    +|.|| |.+|.-++..+..+|.+|..+.++
T Consensus        24 ~~g~~V----lI~ga~g~vG~~~iqla~~~g~~vi~~~~~   59 (183)
T d1pqwa_          24 SPGERV----LIHSATGGVGMAAVSIAKMIGARIYTTAGS   59 (183)
T ss_dssp             CTTCEE----EETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCCCEE----EEECCCCCcccccchhhccccccceeeecc
Confidence            446666    88886 999999998888899999888764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.25  E-value=0.21  Score=34.48  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=28.3

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++||.+    +|-|| +-+|.++|..|++.|.+|.+..|+
T Consensus         3 l~gKva----lVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (264)
T d1spxa_           3 FAEKVA----IITGSSNGIGRATAVLFAREGAKVTITGRH   38 (264)
T ss_dssp             TTTCEE----EETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            356665    66665 588999999999999999999875

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.24  E-value=0.17  Score=35.29  Aligned_cols=33  Identities=18%  Similarity=0.007  Sum_probs=28.5

Q ss_pred             ceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          16 IFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        16 ~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      |+|+|.|| |.+|-.++..|.+.|++|+.+.|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            45689976 8999999999999999999998753

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.24  E-value=0.072  Score=36.92  Aligned_cols=36  Identities=17%  Similarity=0.033  Sum_probs=29.0

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .+||.+    +|-||+ -+|.++|..|++.|.+|.+..|++
T Consensus         2 L~gK~a----lITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVA----VVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEE----EETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            456666    666655 589999999999999999998764

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.23  E-value=0.091  Score=35.98  Aligned_cols=38  Identities=26%  Similarity=0.295  Sum_probs=32.0

Q ss_pred             hhcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231           8 LALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      .++||.+    +|-||+ -+|.++|..|++.|.+|.+..|.+.
T Consensus         4 sl~gK~~----lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSV----LVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEE----EETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            3578887    788776 6999999999999999999998644

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=0.083  Score=39.59  Aligned_cols=29  Identities=24%  Similarity=0.221  Sum_probs=26.3

Q ss_pred             EEEEcCchHHHHHHHHHhhcCC-eEEEEEe
Q psy5231          18 TDVIGGGNTAVEEALYLSNIAK-KVTLIHR   46 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~   46 (148)
                      |+|||.|-+|+|+|..|+..|. +++|+..
T Consensus        40 VlvvG~GglG~ei~k~L~~~Gvg~i~lvD~   69 (426)
T d1yovb1          40 VLVIGAGGLGCELLKNLALSGFRQIHVIDM   69 (426)
T ss_dssp             EEEECSSTTHHHHHHHHHTTTCCCEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEEEC
Confidence            3999999999999999999986 7888876

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=91.16  E-value=0.13  Score=34.16  Aligned_cols=37  Identities=11%  Similarity=0.025  Sum_probs=31.6

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ....|+.+    .|||-|.+|-.+|..+..+|.+|..+.+.
T Consensus        43 ~~l~g~tv----gIiG~G~IG~~va~~l~~fg~~v~~~d~~   79 (191)
T d1gdha1          43 EKLDNKTL----GIYGFGSIGQALAKRAQGFDMDIDYFDTH   79 (191)
T ss_dssp             CCCTTCEE----EEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             ceecccce----EEeecccchHHHHHHHHhhcccccccccc
Confidence            34456777    99999999999999999999999888654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.12  E-value=0.12  Score=33.37  Aligned_cols=38  Identities=11%  Similarity=0.091  Sum_probs=29.9

Q ss_pred             hhhhcCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeC
Q psy5231           6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRN   47 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~   47 (148)
                      +...+|+.|    +|+|+|..|.-++..++..| .+|..+.+.
T Consensus        24 ~~vk~GdtV----lV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~   62 (176)
T d2jhfa2          24 AKVTQGSTC----AVFGLGGVGLSVIMGCKAAGAARIIGVDIN   62 (176)
T ss_dssp             TCCCTTCEE----EEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             hCCCCCCEE----EEECCCCcHHHHHHHHHHcCCceEEeecCc
Confidence            344567777    99999999999999999987 466666654

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.25  Score=34.60  Aligned_cols=31  Identities=13%  Similarity=0.076  Sum_probs=23.9

Q ss_pred             ceEEEE-c-CchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          16 IFTDVI-G-GGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        16 ~~v~Vi-G-gG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      |+|++| | ++-+|..+|..|++.|.+|.++.+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~   34 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYA   34 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEE
Confidence            556777 4 447788999999999999876654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.93  E-value=0.16  Score=34.79  Aligned_cols=35  Identities=20%  Similarity=0.122  Sum_probs=30.3

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +.||.+    +|-||+ -+|..+|..|++.|.+|.+..|+
T Consensus         3 l~GK~a----lITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (242)
T d1cyda_           3 FSGLRA----LVTGAGKGIGRDTVKALHASGAKVVAVTRT   38 (242)
T ss_dssp             CTTCEE----EEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            467887    888875 69999999999999999999875

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=90.85  E-value=0.14  Score=36.40  Aligned_cols=40  Identities=25%  Similarity=0.098  Sum_probs=32.8

Q ss_pred             hhhhhhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           4 EFGILALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         4 ~~g~~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+....+||+|    +|.|| |.+|..++..|.+.|.+|..+.|.
T Consensus         4 ~~~~~~~gk~V----lVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1           4 DNAVLPEGSLV----LVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             TTCSSCTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCCcCEE----EEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            34556678888    89875 789999999999999999877663

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=90.79  E-value=0.24  Score=33.82  Aligned_cols=29  Identities=28%  Similarity=0.417  Sum_probs=24.1

Q ss_pred             EEEcC-chHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231          19 DVIGG-GNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus        19 ~ViGg-G~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      +|.|| |-+|.++|..|++.|. +|.++.|+
T Consensus        13 lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~   43 (259)
T d2fr1a1          13 LVTGGTGGVGGQIARWLARRGAPHLLLVSRS   43 (259)
T ss_dssp             EEETTTSHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred             EEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            78885 6899999999999997 47777775

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=90.70  E-value=0.12  Score=35.73  Aligned_cols=35  Identities=17%  Similarity=-0.003  Sum_probs=27.4

Q ss_pred             CCCCeEEecccCccccchhHHHHHHHHHHHHHHHHh
Q psy5231         111 NISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQR  146 (148)
Q Consensus       111 ~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~  146 (148)
                      +..+||.+||++..+ ...+..|+.+|..||.+|++
T Consensus       332 ~~g~v~~aGd~~~~~-~~~~~~a~~sG~~aA~~i~~  366 (370)
T d2iida1         332 SQGRIYFAGEYTAQA-HGWIDSTIKSGLRAARDVNL  366 (370)
T ss_dssp             CBTTEEECSGGGSSS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEecccccCC-CcccHHHHHHHHHHHHHHHh
Confidence            445699999987655 23466789999999999986

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.62  E-value=0.21  Score=31.84  Aligned_cols=32  Identities=16%  Similarity=0.088  Sum_probs=25.0

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~   48 (148)
                      +|+|||+|.+|..+|..|...+ .++.|+...+
T Consensus         5 KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           5 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4599999999999998887664 4677776543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.55  E-value=0.33  Score=33.11  Aligned_cols=35  Identities=20%  Similarity=-0.053  Sum_probs=28.5

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++||.+    +|-||+ -+|.++|..|++.|.+|.+..|+
T Consensus         2 l~gK~a----lITGas~GIG~a~a~~l~~~G~~Vv~~~r~   37 (243)
T d1q7ba_           2 FEGKIA----LVTGASRGIGRAIAETLAARGAKVIGTATS   37 (243)
T ss_dssp             CTTCEE----EESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            356766    666754 78999999999999999998875

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=90.55  E-value=0.075  Score=36.55  Aligned_cols=34  Identities=15%  Similarity=0.174  Sum_probs=25.9

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHRNEKLR   51 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~~~   51 (148)
                      |+|.|| |.+|-.++..|.+.|..|.+..+...+.
T Consensus         3 ILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~~~   37 (298)
T d1n2sa_           3 ILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFC   37 (298)
T ss_dssp             EEEECTTSHHHHHHHHHTTTTSEEEEECTTCSSSC
T ss_pred             EEEECCCCHHHHHHHHHHHhCCCEEEEECCCcccc
Confidence            589986 9999999999999987665554444443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.54  E-value=0.15  Score=32.78  Aligned_cols=37  Identities=11%  Similarity=0.147  Sum_probs=28.2

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNE   48 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~   48 (148)
                      ...|+.|    +|+|+|..|.-++..++..+. +|+.+.+.+
T Consensus        26 ~k~g~~V----lI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          26 VEPGSTC----AVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             CCTTCEE----EEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCCEE----EEEecCCccchHHHHHHHHhhchheeecchH
Confidence            4456666    999999999999988888865 566666543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.34  Score=34.18  Aligned_cols=31  Identities=23%  Similarity=0.161  Sum_probs=26.9

Q ss_pred             ceEEEEcC-chHHHHHHHHHhhcCCeEEEEEe
Q psy5231          16 IFTDVIGG-GNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        16 ~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      |+|+|.|| |.+|-.++..|.+.|.+|+.+.+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            45588875 89999999999999999999865

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=0.13  Score=35.21  Aligned_cols=35  Identities=17%  Similarity=0.022  Sum_probs=28.8

Q ss_pred             hcCCcccceEEEEc-CchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIG-GGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++||.+    +|.| ++-+|.++|..|++.|.+|.++.|+
T Consensus         4 l~gK~a----lITGas~GIG~aia~~la~~G~~Vi~~~r~   39 (245)
T d2ag5a1           4 LDGKVI----ILTAAAQGIGQAAALAFAREGAKVIATDIN   39 (245)
T ss_dssp             TTTCEE----EESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            456666    6655 4589999999999999999999985

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.39  E-value=0.17  Score=31.98  Aligned_cols=31  Identities=13%  Similarity=0.157  Sum_probs=25.8

Q ss_pred             eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~   47 (148)
                      +|+|||+|.+|..+|..|...+  .++.|+...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            4699999999999999888664  578888754

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=90.31  E-value=0.19  Score=34.66  Aligned_cols=35  Identities=23%  Similarity=0.141  Sum_probs=30.3

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++||.+    +|-||+ -+|.++|..|++.|.+|.+..|+
T Consensus         3 L~gK~a----lVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (254)
T d1hdca_           3 LSGKTV----IITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             CCCSEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            467777    888876 68999999999999999999875

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.26  E-value=0.19  Score=34.42  Aligned_cols=35  Identities=9%  Similarity=0.026  Sum_probs=29.7

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|-||+ -+|.++|..|++.|.+|.+..|+
T Consensus         3 L~gK~~----lITGas~GIG~aia~~l~~~G~~V~~~~r~   38 (242)
T d1ulsa_           3 LKDKAV----LITGAAHGIGRATLELFAKEGARLVACDIE   38 (242)
T ss_dssp             TTTCEE----EEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            357777    788764 69999999999999999999885

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=90.25  E-value=0.47  Score=32.32  Aligned_cols=29  Identities=24%  Similarity=0.162  Sum_probs=23.1

Q ss_pred             EEE-c-CchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          19 DVI-G-GGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        19 ~Vi-G-gG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++| | ++-+|.++|..|++.|.+|.+..++
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga~V~i~~~~   34 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGCKVLVNYAR   34 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            555 4 4578999999999999999887654

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.13  E-value=0.32  Score=34.35  Aligned_cols=36  Identities=19%  Similarity=0.048  Sum_probs=29.1

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++||.+    +|-|++ -+|.++|..|++.|.+|.+..+..
T Consensus         5 l~gKva----lITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           5 FDGRVV----LVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             CTTCEE----EETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             cCCCEE----EEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            457776    676665 689999999999999999987653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.97  E-value=0.22  Score=34.99  Aligned_cols=31  Identities=19%  Similarity=0.124  Sum_probs=26.6

Q ss_pred             ceEEEEcC-chHHHHHHHHHhhcCCeEEEEEe
Q psy5231          16 IFTDVIGG-GNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        16 ~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      |+|+|.|| |.+|-.++..|.+.|.+|+.+.+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            34588875 79999999999999999999865

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.94  E-value=0.35  Score=33.14  Aligned_cols=35  Identities=20%  Similarity=0.095  Sum_probs=28.8

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++||.+    +|-|| +-+|.++|..|++.|.+|.+..|.
T Consensus         4 L~gK~a----lVTGas~GIG~aia~~la~~Ga~V~~~~r~   39 (251)
T d1zk4a1           4 LDGKVA----IITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTTCEE----EETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            456776    77775 468999999999999999999874

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=0.22  Score=34.26  Aligned_cols=36  Identities=19%  Similarity=0.147  Sum_probs=30.9

Q ss_pred             hhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+.||.+    +|-|| +-+|..+|..|++.|.+|.+..|.
T Consensus         3 rl~GK~a----lITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (250)
T d1ydea1           3 RYAGKVV----VVTGGGRGIGAGIVRAFVNSGARVVICDKD   39 (250)
T ss_dssp             TTTTCEE----EEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4678887    88886 589999999999999999999875

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.83  E-value=0.23  Score=33.63  Aligned_cols=35  Identities=31%  Similarity=0.186  Sum_probs=29.9

Q ss_pred             cCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          10 LIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        10 ~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +||.+    +|-|+ +-+|.++|..|++.|.+|.+..|++
T Consensus         3 kgK~~----lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           3 RDKGV----LVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             TTCEE----EEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEE----EEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56777    88887 4799999999999999999998853

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.79  E-value=0.23  Score=33.97  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=30.1

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..||.+    +|.|++ -+|.++|..|++.|.+|.++.|+
T Consensus         5 L~GK~~----lITGas~GIG~aia~~la~~G~~V~~~~r~   40 (244)
T d1pr9a_           5 LAGRRV----LVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             CTTCEE----EEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            467887    888765 78999999999999999999875

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.57  E-value=0.64  Score=26.75  Aligned_cols=49  Identities=20%  Similarity=0.075  Sum_probs=35.0

Q ss_pred             EEEEcCchHHHH-HHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCc
Q psy5231          18 TDVIGGGNTAVE-EALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKH   75 (148)
Q Consensus        18 v~ViGgG~~g~e-~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~   75 (148)
                      +=+||=|-+|+- +|..|.+.|.+|+--.+.+     ....++|.    +.|++++.+.
T Consensus         4 ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~-----~~~t~~L~----~~Gi~i~~gh   53 (89)
T d1j6ua1           4 IHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE-----TERTAYLR----KLGIPIFVPH   53 (89)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECSSC-----CHHHHHHH----HTTCCEESSC
T ss_pred             EEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC-----ChhHHHHH----HCCCeEEeee
Confidence            467777777774 6999999999999876532     23444454    6899997654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.55  E-value=0.27  Score=33.25  Aligned_cols=31  Identities=10%  Similarity=0.080  Sum_probs=25.9

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++|-|| +-+|..+|..|++.|.+|.++.+++
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            366665 5799999999999999999998864

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=0.26  Score=34.80  Aligned_cols=37  Identities=19%  Similarity=0.125  Sum_probs=31.6

Q ss_pred             hhhcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      -..+||.+    +|-||+ -+|.++|..|++.|.+|.+..|+
T Consensus         8 g~L~gKva----lITGas~GIG~aia~~la~~Ga~Vvi~~r~   45 (297)
T d1yxma1           8 GLLQGQVA----IVTGGATGIGKAIVKELLELGSNVVIASRK   45 (297)
T ss_dssp             TTTTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35678888    888865 69999999999999999999875

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.30  E-value=0.33  Score=33.34  Aligned_cols=35  Identities=26%  Similarity=0.173  Sum_probs=28.6

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|-||+ -+|..+|..|++.|.+|.+..|+
T Consensus         4 L~gK~a----lITGas~GIG~aia~~la~~Ga~V~~~~~~   39 (253)
T d1hxha_           4 LQGKVA----LVTGGASGVGLEVVKLLLGEGAKVAFSDIN   39 (253)
T ss_dssp             TTTCEE----EETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            456776    776754 68999999999999999998874

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=89.29  E-value=0.25  Score=34.00  Aligned_cols=35  Identities=26%  Similarity=0.232  Sum_probs=30.7

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      ...|++|    +|-|-|.+|..+|..|.+.|.+|+-+..
T Consensus        28 ~l~g~~v----~IqGfGnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          28 GIEGKTV----AIQGMGNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             CCTTCEE----EEECCSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCCCEE----EEECCCHHHHHHHHHHHHcCCeEEEeec
Confidence            4567888    9999999999999999999999886653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.28  E-value=0.23  Score=31.72  Aligned_cols=35  Identities=11%  Similarity=-0.049  Sum_probs=27.2

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEE
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIH   45 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~   45 (148)
                      ...+|+.|    +|.|+|.+|.-++..+...|.+++++.
T Consensus        25 ~~~~G~tV----lI~GaGGvG~~aiq~ak~~G~~~vi~~   59 (176)
T d2fzwa2          25 KLEPGSVC----AVFGLGGVGLAVIMGCKVAGASRIIGV   59 (176)
T ss_dssp             CCCTTCEE----EEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCCCEE----EEecchhHHHHHHHHHHHHhcCceEEE
Confidence            34567777    999999999999999998986555444

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=89.19  E-value=0.18  Score=32.43  Aligned_cols=37  Identities=5%  Similarity=0.005  Sum_probs=27.8

Q ss_pred             hhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           8 LALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ...|++|    +|.|+ |.+|.-+......+|.+|+.+.+++
T Consensus        26 l~~g~~V----lv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~   63 (179)
T d1qora2          26 IKPDEQF----LFHAAAGGVGLIACQWAKALGAKLIGTVGTA   63 (179)
T ss_dssp             CCTTCEE----EESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCCCEE----EEEccccccchHHHHHHHHhCCeEeecccch
Confidence            3456666    88854 5588888888888899999887753

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.13  E-value=0.24  Score=33.95  Aligned_cols=34  Identities=26%  Similarity=0.061  Sum_probs=28.6

Q ss_pred             cCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          10 LIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        10 ~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      +||.+    +|-||+ -+|..+|..|++.|.+|.+..|+
T Consensus         2 ~GKva----lITGas~GIG~aia~~la~~Ga~V~i~~r~   36 (254)
T d2gdza1           2 NGKVA----LVTGAAQGIGRAFAEALLLKGAKVALVDWN   36 (254)
T ss_dssp             TTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            46666    777774 69999999999999999999875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.07  E-value=0.2  Score=32.33  Aligned_cols=37  Identities=11%  Similarity=-0.019  Sum_probs=29.8

Q ss_pred             hhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           8 LALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ..+|++|    +|.|+ |.+|.-+...+...|.+|+.+.+++
T Consensus        25 ~~~g~~V----lI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          25 ARPGEKV----LVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             CCTTCEE----EESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEE----EEEeccccchhhhhhhhcccccccccccccc
Confidence            3456666    89895 9999998888888999998887654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.00  E-value=0.2  Score=34.51  Aligned_cols=35  Identities=14%  Similarity=-0.024  Sum_probs=29.7

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|-|| +-+|.++|..|++.|.+|.+..|+
T Consensus         3 L~gK~a----lVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (256)
T d1k2wa_           3 LDGKTA----LITGSARGIGRAFAEAYVREGARVAIADIN   38 (256)
T ss_dssp             TTTEEE----EEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            457777    88877 578999999999999999999875

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.96  E-value=0.25  Score=37.63  Aligned_cols=36  Identities=19%  Similarity=0.037  Sum_probs=32.4

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC   52 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~   52 (148)
                      +|+|+|.|..-+=+|..|++.|++|.-+.+.+..++
T Consensus         8 DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg   43 (491)
T d1vg0a1           8 DVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGG   43 (491)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCC
Confidence            359999999999999999999999999999877654

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=88.93  E-value=0.29  Score=34.05  Aligned_cols=35  Identities=14%  Similarity=0.118  Sum_probs=30.0

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|-|| +-+|.++|..|++.|.+|.+..|+
T Consensus         3 L~gK~a----lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (276)
T d1bdba_           3 LKGEAV----LITGGASGLGRALVDRFVAEGAKVAVLDKS   38 (276)
T ss_dssp             TTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            357777    88876 589999999999999999999875

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=88.88  E-value=0.26  Score=33.71  Aligned_cols=33  Identities=24%  Similarity=0.116  Sum_probs=29.8

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEE
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIH   45 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~   45 (148)
                      ..|++|    +|-|-|.+|..+|..|.+.|.+|+...
T Consensus        37 l~g~~v----~IqG~GnVG~~~a~~L~~~Gakvv~~d   69 (230)
T d1leha1          37 LEGLAV----SVQGLGNVAKALCKKLNTEGAKLVVTD   69 (230)
T ss_dssp             CTTCEE----EEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCEE----EEECCCHHHHHHHHHHHHCCCEEEeec
Confidence            578888    999999999999999999999988764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=88.84  E-value=0.26  Score=31.84  Aligned_cols=37  Identities=8%  Similarity=0.055  Sum_probs=29.1

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~   47 (148)
                      ....|+.|    +|+|.|.+|+-++..+...|. +|..+.+.
T Consensus        24 ~~~~G~~V----lV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          24 KVTPGSTC----AVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             CCCTTCEE----EEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCCCCEE----EEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            34556777    999999999999999999886 56666553

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=88.83  E-value=0.29  Score=33.75  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=29.4

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++||.+    +|-||+ -+|..+|..|++.|.+|.+..|+
T Consensus         2 l~gK~a----lITGas~GIG~aia~~la~~Ga~V~i~~r~   37 (258)
T d1iy8a_           2 FTDRVV----LITGGGSGLGRATAVRLAAEGAKLSLVDVS   37 (258)
T ss_dssp             CTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            457776    777776 68999999999999999999875

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.78  E-value=0.31  Score=33.38  Aligned_cols=35  Identities=17%  Similarity=0.007  Sum_probs=29.4

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      .+||.+    +|-|++ -+|.++|..|++.|.+|.+..|+
T Consensus         4 L~gK~a----lITGas~GIG~aia~~la~~G~~V~~~~r~   39 (244)
T d1nffa_           4 LTGKVA----LVSGGARGMGASHVRAMVAEGAKVVFGDIL   39 (244)
T ss_dssp             TTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            456776    777774 68999999999999999999875

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.67  E-value=0.29  Score=32.71  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=26.1

Q ss_pred             EEEcC-chHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          19 DVIGG-GNTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        19 ~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      +|-|| +-+|..+|..|++.|.+|.+..|+++
T Consensus         5 lITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           5 LVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            66665 58899999999999999999998543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.67  E-value=0.32  Score=34.63  Aligned_cols=37  Identities=19%  Similarity=0.087  Sum_probs=30.7

Q ss_pred             hhhcCCcccceEEEEc-CchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           7 ILALIKPVIIFTDVIG-GGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+-++-+|    +|.| +|.+|..++..|.+.|.+|+.+.+.
T Consensus        11 ~~~~nMKI----LVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          11 WPSENLKI----SITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             CTTSCCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEE----EEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            44456666    8887 6899999999999999999999764

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.45  E-value=0.27  Score=27.73  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=28.5

Q ss_pred             hcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      .+++++    +|.|+ |-+|.-....+...|.+|+.+.+++
T Consensus        30 ~~~~~v----lI~gasGgVG~~aiQlak~~G~~Vi~~t~s~   66 (77)
T d1o8ca2          30 PQDGEI----VVTGASGGVGSTAVALLHKLGYQVVAVSGRE   66 (77)
T ss_dssp             GGGCEE----EESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cCCCcE----EEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence            456677    88776 7888888887788899999888764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.36  E-value=0.35  Score=32.38  Aligned_cols=39  Identities=28%  Similarity=0.233  Sum_probs=31.6

Q ss_pred             hhhhcCCcccceEEEEcC-chHHHHHHHHHhhcCC--eEEEEEeCC
Q psy5231           6 GILALIKPVIIFTDVIGG-GNTAVEEALYLSNIAK--KVTLIHRNE   48 (148)
Q Consensus         6 g~~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~--~Vtlv~~~~   48 (148)
                      -+.+.+++|    +|.|| |.+|-.+...|.+.|.  +|+++.|++
T Consensus         9 ~~~m~~k~I----lItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1           9 DFRMQNKSV----FILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             HHHHTCCEE----EEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             HhCCCCCEE----EEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            344567777    88875 8999999999998884  899999854

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.29  E-value=0.21  Score=31.90  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=26.7

Q ss_pred             cCCcccceEEEEc-CchHHHHHHHHHhhcC-CeEEEEEeC
Q psy5231          10 LIKPVIIFTDVIG-GGNTAVEEALYLSNIA-KKVTLIHRN   47 (148)
Q Consensus        10 ~gk~v~~~v~ViG-gG~~g~e~A~~l~~~g-~~Vtlv~~~   47 (148)
                      .|++|    +|+| +|.+|+-++..+...| .+|++++++
T Consensus        27 ~g~~v----lV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          27 PTKTL----LVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             TTCEE----EEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CCCEE----EEEeccccceeeeeecccccccccccccccc
Confidence            45556    9999 5999999998888888 577777754

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.24  E-value=0.38  Score=32.83  Aligned_cols=36  Identities=11%  Similarity=0.008  Sum_probs=29.8

Q ss_pred             hcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231           9 ALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      ++||.+    +|-||+ -+|..+|..|++.|.+|.+..|.+
T Consensus         3 L~gKva----lVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           3 LKDKLA----VITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTTCEE----EEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEE----EEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            456666    777775 689999999999999999998754

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.21  E-value=0.37  Score=33.87  Aligned_cols=32  Identities=22%  Similarity=0.076  Sum_probs=27.2

Q ss_pred             ceE-EEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFT-DVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v-~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+| +|.|| |.+|-.++..|.+.|++|+.+.|.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            456 57665 799999999999999999999874

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.19  E-value=1.1  Score=31.41  Aligned_cols=29  Identities=14%  Similarity=0.122  Sum_probs=24.8

Q ss_pred             EEEEc-CchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          18 TDVIG-GGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        18 v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      |+|.| +|.+|-.++..|.+.|.+|+.+.+
T Consensus         4 ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            36665 579999999999999999999865

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.15  E-value=0.3  Score=31.28  Aligned_cols=34  Identities=15%  Similarity=0.070  Sum_probs=26.2

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCe-EEEEEe
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKK-VTLIHR   46 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~   46 (148)
                      ..|+.|    +|+|+|.+|.-++..+...|.. |+++.+
T Consensus        31 ~~g~~v----li~GaG~vG~~~~~~a~~~g~~~vv~~~~   65 (172)
T d1h2ba2          31 YPGAYV----AIVGVGGLGHIAVQLLKVMTPATVIALDV   65 (172)
T ss_dssp             CTTCEE----EEECCSHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CCCCEE----EEeCCChHHHHHHHHHHhhcCcccccccc
Confidence            456667    9999999999999888888754 444554

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=87.84  E-value=0.59  Score=31.96  Aligned_cols=30  Identities=17%  Similarity=0.042  Sum_probs=25.1

Q ss_pred             EEE-cC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          19 DVI-GG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        19 ~Vi-Gg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|| || +-+|.++|..|++.|.+|.+..+++
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~~   36 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   36 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            666 44 5799999999999999999987754

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=87.83  E-value=1.1  Score=30.15  Aligned_cols=50  Identities=18%  Similarity=0.112  Sum_probs=35.7

Q ss_pred             CchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEE
Q psy5231          23 GGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIK   72 (148)
Q Consensus        23 gG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~   72 (148)
                      +|-.|.++|..+..+|.+||+|+......           ...++.+.+.+.+++..+-+.
T Consensus        31 SGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~~~~~D~~i~   91 (223)
T d1u7za_          31 SGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIG   91 (223)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEE
T ss_pred             cHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhhhccceeEee
Confidence            47799999999999999999998754321           124566666666655555544

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.82  E-value=0.37  Score=30.40  Aligned_cols=31  Identities=23%  Similarity=0.298  Sum_probs=24.6

Q ss_pred             eEEEEc-CchHHHHHHHHHhh---cCCeEEEEEeC
Q psy5231          17 FTDVIG-GGNTAVEEALYLSN---IAKKVTLIHRN   47 (148)
Q Consensus        17 ~v~ViG-gG~~g~e~A~~l~~---~g~~Vtlv~~~   47 (148)
                      +|+||| +|.+|..+|..|..   .+.++.|+...
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            469999 59999999988753   36788898753

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=87.77  E-value=1.1  Score=30.82  Aligned_cols=30  Identities=10%  Similarity=0.036  Sum_probs=25.4

Q ss_pred             eEEEEc-CchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIG-GGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|.| .|.+|-.++..|.+.|.+|+.+.+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            357775 589999999999999999998864

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=87.76  E-value=0.23  Score=32.20  Aligned_cols=36  Identities=14%  Similarity=-0.108  Sum_probs=27.0

Q ss_pred             hhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ..+|+.|    +|.|+ |.+|.-++......|.+|+.+.++
T Consensus        27 v~~G~~V----lV~ga~ggvG~~aiqlak~~Ga~vi~~~~~   63 (182)
T d1v3va2          27 VKGGETV----LVSAAAGAVGSVVGQIAKLKGCKVVGAAGS   63 (182)
T ss_dssp             CCSSCEE----EESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEE----EEEeCCCchhHHHHHHHHccCCEEEEeCCC
Confidence            3457777    88888 557777777777789999988764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.76  E-value=0.37  Score=32.47  Aligned_cols=32  Identities=16%  Similarity=0.052  Sum_probs=27.2

Q ss_pred             eEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          17 FTDVIGGG-NTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|+|.||+ -+|.++|..|++.|.+|.++.|..
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~   36 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   36 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            44888764 889999999999999999998854

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=87.71  E-value=0.32  Score=34.81  Aligned_cols=32  Identities=22%  Similarity=0.181  Sum_probs=27.0

Q ss_pred             ceEEEEc-CchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIG-GGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |.++|.| +|.+|..++..|.+.|.+|+.+.|.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            3446887 7899999999999999999998874

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.30  E-value=0.43  Score=33.63  Aligned_cols=30  Identities=17%  Similarity=0.105  Sum_probs=25.9

Q ss_pred             eEEEEc-CchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIG-GGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      .++|.| +|.+|-.++..|.+.|.+|+.+.+
T Consensus        18 ~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          18 VWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            348876 489999999999999999999875

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=87.29  E-value=0.47  Score=32.87  Aligned_cols=34  Identities=12%  Similarity=0.084  Sum_probs=28.0

Q ss_pred             eEEEEcC-chHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231          17 FTDVIGG-GNTAVEEALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        17 ~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +|+|.|| |.+|-.++..|.+.|..|.++..+.++
T Consensus         4 kIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~   38 (315)
T d1e6ua_           4 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL   38 (315)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC
T ss_pred             EEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhc
Confidence            4588875 899999999999999998877665554

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.19  E-value=0.49  Score=33.51  Aligned_cols=34  Identities=24%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231           9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus         9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      ..|++|    +|=|-|.+|..+|..|.+.|.+|+-+.-
T Consensus        34 L~gktv----aIqGfGnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          34 FGDKTF----AVQGFGNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             STTCEE----EEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            467788    9999999999999999999999887754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.18  E-value=0.39  Score=30.21  Aligned_cols=30  Identities=27%  Similarity=0.354  Sum_probs=25.1

Q ss_pred             eEEEEcC-chHHHHHHHHHhhcC--CeEEEEEe
Q psy5231          17 FTDVIGG-GNTAVEEALYLSNIA--KKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGg-G~~g~e~A~~l~~~g--~~Vtlv~~   46 (148)
                      +|+|||+ |.+|..+|..|...+  .++.|+..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi   34 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDI   34 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEES
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEec
Confidence            5699995 999999999999774  57888865

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.76  E-value=0.47  Score=33.14  Aligned_cols=30  Identities=17%  Similarity=0.145  Sum_probs=26.0

Q ss_pred             EEEEc-CchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231          18 TDVIG-GGNTAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        18 v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      ++|.| +|.+|-.++..|.+.|++|+.+.|.
T Consensus         4 ~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           4 ALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            36666 5899999999999999999999874

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.53  E-value=0.0098  Score=39.91  Aligned_cols=27  Identities=15%  Similarity=0.102  Sum_probs=23.9

Q ss_pred             ceEEEEcCchHHHHHHHHHhhcCCeEE
Q psy5231          16 IFTDVIGGGNTAVEEALYLSNIAKKVT   42 (148)
Q Consensus        16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt   42 (148)
                      ++|.|+|+|.+|+|+|..+++.|.+|+
T Consensus       178 ~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         178 EGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             TTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             CcEEEECCCccHHHHHHHHHHHHHHHH
Confidence            456999999999999999999998874

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=86.49  E-value=0.38  Score=33.37  Aligned_cols=36  Identities=25%  Similarity=0.186  Sum_probs=31.0

Q ss_pred             hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231           7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus         7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      ....|++|    +|=|-|.+|.-+|..|.+.|.+|+-+.-
T Consensus        32 ~~l~g~~v----~IQGfGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          32 DTLVGKTV----ALAGFGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             CCSTTCEE----EECCSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCCCEE----EEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence            34567887    9999999999999999999999886654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.07  E-value=0.32  Score=31.76  Aligned_cols=29  Identities=21%  Similarity=0.008  Sum_probs=24.3

Q ss_pred             ceEEEEc-CchHHHHHHHHHhhcCCeEEEE
Q psy5231          16 IFTDVIG-GGNTAVEEALYLSNIAKKVTLI   44 (148)
Q Consensus        16 ~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv   44 (148)
                      ++|+|.| +|.+|-.++..|.+.|.+|+++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~   33 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAK   33 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEE
Confidence            4569998 5999999999999999876654

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.73  E-value=0.62  Score=29.10  Aligned_cols=32  Identities=16%  Similarity=0.093  Sum_probs=26.2

Q ss_pred             ceEEEEcCch----HHHHHHHHHhhcCCeEEEEEeC
Q psy5231          16 IFTDVIGGGN----TAVEEALYLSNIAKKVTLIHRN   47 (148)
Q Consensus        16 ~~v~ViGgG~----~g~e~A~~l~~~g~~Vtlv~~~   47 (148)
                      |+|+|||++.    .|-..+..|.+.|++|..|..+
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~   55 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK   55 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCc
Confidence            3449999874    6888889999999999999764

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=85.67  E-value=0.58  Score=29.36  Aligned_cols=30  Identities=13%  Similarity=0.268  Sum_probs=24.7

Q ss_pred             eEEEEc-CchHHHHHHHHHhhcC--CeEEEEEe
Q psy5231          17 FTDVIG-GGNTAVEEALYLSNIA--KKVTLIHR   46 (148)
Q Consensus        17 ~v~ViG-gG~~g~e~A~~l~~~g--~~Vtlv~~   46 (148)
                      +|+||| +|.+|..+|..|...+  .++.|+..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            569999 6999999999998875  47777764

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.57  E-value=1  Score=29.81  Aligned_cols=32  Identities=19%  Similarity=0.093  Sum_probs=26.5

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEE-EEEeCC
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVT-LIHRNE   48 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vt-lv~~~~   48 (148)
                      +|+++|.+..|+++...|.+.+.+|. +++..+
T Consensus         2 kI~~~G~~~~~~~~l~~L~~~~~~i~~V~t~p~   34 (203)
T d2bw0a2           2 KIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPD   34 (203)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred             EEEEEcCCHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            46999999999999999999999988 455433

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.05  E-value=0.48  Score=34.07  Aligned_cols=29  Identities=34%  Similarity=0.392  Sum_probs=25.4

Q ss_pred             eEEEEcC-chHHHHHHHHHhhcCCeEEEEE
Q psy5231          17 FTDVIGG-GNTAVEEALYLSNIAKKVTLIH   45 (148)
Q Consensus        17 ~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~   45 (148)
                      +|+|.|| |.+|-.++..|.+.|++|+.+.
T Consensus         3 kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           3 RVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            3488875 7999999999999999999885

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.75  E-value=0.41  Score=36.65  Aligned_cols=29  Identities=21%  Similarity=0.083  Sum_probs=25.7

Q ss_pred             EEEEcCchHHHHHHHHHhhcC-CeEEEEEe
Q psy5231          18 TDVIGGGNTAVEEALYLSNIA-KKVTLIHR   46 (148)
Q Consensus        18 v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~   46 (148)
                      |+|+|.|..|+|+|..|+..| .++||+..
T Consensus        28 VlvvG~gglG~Ei~knLvl~GVg~itivD~   57 (529)
T d1yova1          28 VCLINATATGTEILKNLVLPGIGSFTIIDG   57 (529)
T ss_dssp             EEECCCSHHHHHHHHHHHTTTCSEEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHhcCCEEEEEcC
Confidence            399999999999999999988 47888865

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=84.53  E-value=0.46  Score=33.59  Aligned_cols=31  Identities=19%  Similarity=0.065  Sum_probs=26.0

Q ss_pred             ceEEEEc-CchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          16 IFTDVIG-GGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        16 ~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      ++|+|.| +|.+|-.++..|.+.|.+|+++.+
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            4569998 689999999999999988777654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=84.24  E-value=0.8  Score=31.11  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=27.4

Q ss_pred             ceEEEEc-Cc----hHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231          16 IFTDVIG-GG----NTAVEEALYLSNIAKKVTLIHRNEK   49 (148)
Q Consensus        16 ~~v~ViG-gG----~~g~e~A~~l~~~g~~Vtlv~~~~~   49 (148)
                      |.|+|.| ||    .+++.+|..|++.|++|-+|.....
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            4568887 44    5778899999999999999998643

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=82.01  E-value=0.74  Score=32.85  Aligned_cols=27  Identities=11%  Similarity=0.100  Sum_probs=22.3

Q ss_pred             EEEEcC-chHHHHHHHHHhhcCCeEEEE
Q psy5231          18 TDVIGG-GNTAVEEALYLSNIAKKVTLI   44 (148)
Q Consensus        18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv   44 (148)
                      |+|.|| |.+|..++..|.+.|.+|++.
T Consensus         3 ILItG~tGfIGs~l~~~L~~~g~~vv~~   30 (361)
T d1kewa_           3 ILITGGAGFIGSAVVRHIIKNTQDTVVN   30 (361)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHCSCEEEE
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCCEEEE
Confidence            577765 799999999999999986544

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=81.94  E-value=1.2  Score=31.53  Aligned_cols=31  Identities=16%  Similarity=0.208  Sum_probs=20.2

Q ss_pred             cceEEEEcCchHHHHHHHHHhhc--CCeEEEEEeC
Q psy5231          15 IIFTDVIGGGNTAVEEALYLSNI--AKKVTLIHRN   47 (148)
Q Consensus        15 ~~~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~   47 (148)
                      +|+|+|||+|.-+.  +.++.+.  ..+|+++|-.
T Consensus        78 pk~VLiiG~G~G~~--~~~ll~~~~~~~v~~VEiD  110 (312)
T d1uira_          78 PKRVLIVGGGEGAT--LREVLKHPTVEKAVMVDID  110 (312)
T ss_dssp             CCEEEEEECTTSHH--HHHHTTSTTCCEEEEEESC
T ss_pred             cceEEEeCCCchHH--HHHHHhcCCcceEEEecCC
Confidence            45569999997433  3334333  4689999864

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=81.28  E-value=0.94  Score=30.65  Aligned_cols=36  Identities=22%  Similarity=0.212  Sum_probs=28.7

Q ss_pred             hhcCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeC
Q psy5231           8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRN   47 (148)
Q Consensus         8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~   47 (148)
                      ...++++    +++|+|..|+-+|..|.+.+ +++.++++.
T Consensus        23 ~l~d~ri----v~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          23 KIEEVKV----VVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             CTTTCEE----EEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             ChhhcEE----EEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            4456666    99999999999999887765 567777774

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.60  E-value=1.5  Score=25.26  Aligned_cols=30  Identities=10%  Similarity=0.154  Sum_probs=24.6

Q ss_pred             eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231          17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR   46 (148)
Q Consensus        17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~   46 (148)
                      +|+|||+|-----+|+.|++...+++++..
T Consensus         2 kVLviGsGgREHAia~~l~~s~~~v~~~pG   31 (90)
T d1vkza2           2 RVHILGSGGREHAIGWAFAKQGYEVHFYPG   31 (90)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCeEEEecC
Confidence            469999998888889999988888777643

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.31  E-value=3.7  Score=27.11  Aligned_cols=33  Identities=27%  Similarity=0.345  Sum_probs=26.4

Q ss_pred             EEEEcCchHHHH---HHHHHhhcCCeEEEEEeCCCC
Q psy5231          18 TDVIGGGNTAVE---EALYLSNIAKKVTLIHRNEKL   50 (148)
Q Consensus        18 v~ViGgG~~g~e---~A~~l~~~g~~Vtlv~~~~~~   50 (148)
                      +++.|.|+-|-+   +|..|.++|.+|+++...++.
T Consensus        44 lvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~~~~~   79 (211)
T d2ax3a2          44 LVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKK   79 (211)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSC
T ss_pred             EEEECCCCCchhHHHHHHHHHhcCCeeEEEecCccC
Confidence            477799987765   889999999999998765544

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.24  E-value=1.1  Score=30.16  Aligned_cols=30  Identities=27%  Similarity=0.299  Sum_probs=24.6

Q ss_pred             EEE-cC-chHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231          19 DVI-GG-GNTAVEEALYLSNIAKKVTLIHRNE   48 (148)
Q Consensus        19 ~Vi-Gg-G~~g~e~A~~l~~~g~~Vtlv~~~~   48 (148)
                      +|| |+ +-+|...|..|++.|.+|.+..|+.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            444 44 4689999999999999999999864

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.13  E-value=2.5  Score=27.26  Aligned_cols=59  Identities=10%  Similarity=0.054  Sum_probs=41.5

Q ss_pred             hcCCcccceEEEEcC--chHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEE
Q psy5231           9 ALIKPVIIFTDVIGG--GNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIK   72 (148)
Q Consensus         9 ~~gk~v~~~v~ViGg--G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~   72 (148)
                      ..|-++    +.||-  ..++-.++..++.+|.+++++... .+...+...+.+++..+..|..+.
T Consensus         3 l~~lki----a~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~-~~~~~~~~~~~~~~~~~~~~~~~~   63 (185)
T d1dxha2           3 LHDISY----AYLGDARNNMGNSLLLIGAKLGMDVRIAAPK-ALWPHDEFVAQCKKFAEESGAKLT   63 (185)
T ss_dssp             GGGCEE----EEESCCSSHHHHHHHHHHHHTTCEEEEECCG-GGSCCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCEE----EEEcCCcchHHHHHHHHHHHcCCEEEEEccH-HHHhhhHHHHHHHHHhhccCCeEE
Confidence            345566    99994  478888999999999999999863 455566666666654444454443