Psyllid ID: psy5244

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MDIVKSLQKACQGELQQSVRLSSCGPSTKDTKTKADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSNV
Secondary Structure (PSIPRED)
cHHHHHHHHHHccHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHccEEccccEEEEEEccccccccccEEEEcccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcEEEcccccccHHHHccccccHHHHHHHHHHcccccccccEEEEEcccccccccccEEEEcHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDIVKSLQKACQGElqqsvrlsscgpstkdtktkadqtdSTLRLWVKKYgwkeldngyifianqdeniktkniteKIEFENAATIMTSNV
Flexible Loop (DISEMBL)
MDIVKSLQKACqgelqqsvrlsscgpstkdtktkadqtdstlrLWVKKYGWKELDNGYIfianqdeniktknitekiefenaatimtsnv
Low Complexity Region (SEG)
MDIVKSLQKACQGELQQSVRLSSCGPStkdtktkadqtdstLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSNV
Disordered region (IsUnstruct)
****************************************TLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEF***********
Disordered Region (DISOPRED)
****KS*QKACQGELQQSVRLSSCGPSTKDTKTKADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN*
Disordered Region (DISEMBL)
**************************************DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSNV
Disordered Region (DISPRO)
MDIVKSLQKACQGELQQSVRLSSCGPSTKDTKTKADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDIVKSLQKACQGELQQSVRLSSCGPSTKDTKTKADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q1HPS4	218	Eukaryotic translation in	N/A	N/A	0.522	0.215	0.708	7e-13
Q28C65	218	Eukaryotic translation in	yes	N/A	0.611	0.252	0.527	1e-11
Q6GNI4	218	Eukaryotic translation in	N/A	N/A	0.611	0.252	0.527	2e-11
Q3T0V3	218	Eukaryotic translation in	yes	N/A	0.611	0.252	0.509	1e-10
Q567V6	219	Eukaryotic translation in	yes	N/A	0.611	0.251	0.472	2e-10
B3MIY7	222	Eukaryotic translation in	N/A	N/A	0.533	0.216	0.604	3e-10
Q9UBQ5	218	Eukaryotic translation in	yes	N/A	0.611	0.252	0.490	3e-10
Q9DBZ5	218	Eukaryotic translation in	yes	N/A	0.611	0.252	0.472	7e-10
B4JVG7	222	Eukaryotic translation in	N/A	N/A	0.533	0.216	0.562	2e-09
B4P8V1	222	Eukaryotic translation in	N/A	N/A	0.533	0.216	0.562	2e-09

>sp|Q1HPS4|EIF3K_BOMMO Eukaryotic translation initiation factor 3 subunit K OS=Bombyx mori PE=2 SV=1

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 40/48 (83%), Gaps = 1/48 (2%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIM 86
           D TL+ WVKKYGW++ D   IFIANQDENIKTKNITEKIEF++ A +M
Sbjct: 169 DVTLKHWVKKYGWRD-DGSLIFIANQDENIKTKNITEKIEFDHLAPLM 215

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Bombyx mori (taxid: 7091)

>sp|Q28C65|EIF3K_XENTR Eukaryotic translation initiation factor 3 subunit K OS=Xenopus tropicalis GN=eif3k PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 35  ADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
            D ++  LR+W+ KYGW E +NG IF+ NQ+ENIK KNI EKI+F++ + IM S+
Sbjct: 163 GDLSEPQLRVWMSKYGWMESENGKIFVCNQEENIKPKNIVEKIDFDSVSGIMASS 217

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus tropicalis (taxid: 8364)

>sp|Q6GNI4|EIF3K_XENLA Eukaryotic translation initiation factor 3 subunit K OS=Xenopus laevis GN=eif3k PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query: 35  ADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
            D ++  LR+W+ KYGW E +NG IF+ NQ+ENIK KNI EKI+F++ + IM S+
Sbjct: 163 GDLSEPQLRVWMSKYGWIESENGKIFVCNQEENIKPKNIVEKIDFDSVSGIMASS 217

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus laevis (taxid: 8355)

>sp|Q3T0V3|EIF3K_BOVIN Eukaryotic translation initiation factor 3 subunit K OS=Bos taurus GN=EIF3K PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 35  ADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
            D TDS L++W+ KYGW   ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct: 163 GDLTDSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.

Bos taurus (taxid: 9913)

>sp|Q567V6|EIF3K_DANRE Eukaryotic translation initiation factor 3 subunit K OS=Danio rerio GN=eif3k PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 42/55 (76%)

Query: 35  ADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
            D  D+ +++W+ KYGW E ++G IFI NQ+E++K KNI EKI+FE+ ++IM ++
Sbjct: 164 GDPLDTQVKVWMNKYGWTENEDGQIFIHNQEESVKPKNIVEKIDFESVSSIMATS 218

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Danio rerio (taxid: 7955)

>sp|B3MIY7|EIF3K_DROAN Eukaryotic translation initiation factor 3 subunit K OS=Drosophila ananassae GN=GF13261 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 34/48 (70%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIM 86
           DSTL  WVK+ GWK    G + +A QD+ IKTKNITEKIEFEN   +M
Sbjct: 171 DSTLESWVKRNGWKHQGQGLVVVATQDDKIKTKNITEKIEFENVGALM 218

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila ananassae (taxid: 7217)

>sp|Q9UBQ5|EIF3K_HUMAN Eukaryotic translation initiation factor 3 subunit K OS=Homo sapiens GN=EIF3K PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 42/55 (76%)

Query: 35  ADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
            D +DS L++W+ KYGW   ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct: 163 GDLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.

Homo sapiens (taxid: 9606)

>sp|Q9DBZ5|EIF3K_MOUSE Eukaryotic translation initiation factor 3 subunit K OS=Mus musculus GN=Eif3k PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 42/55 (76%)

Query: 35  ADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
            D TD+ L++W+ KYGW   ++G +FI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct: 163 GDLTDNQLKVWMSKYGWSADESGQVFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S preinitiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of posttermination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.

Mus musculus (taxid: 10090)

>sp|B4JVG7|EIF3K_DROGR Eukaryotic translation initiation factor 3 subunit K OS=Drosophila grimshawi GN=GH22679 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 34/48 (70%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIM 86
           DSTL  W+K+ GWK   +  + +A QD+ IKTKNITEKIEFEN   +M
Sbjct: 171 DSTLESWIKRNGWKHQGHDLVVVATQDDKIKTKNITEKIEFENVGALM 218

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila grimshawi (taxid: 7222)

>sp|B4P8V1|EIF3K_DROYA Eukaryotic translation initiation factor 3 subunit K OS=Drosophila yakuba GN=GE12213 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 34/48 (70%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIM 86
           DSTL  W+K+ GWK    G + +A QD+ IKTKNITEKIEF+N   +M
Sbjct: 171 DSTLESWIKRNGWKHQGQGLVVVAMQDDKIKTKNITEKIEFDNVGGLM 218

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila yakuba (taxid: 7245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
322789771	239	hypothetical protein SINV_15354 [Solenop	0.6	0.225	0.666	2e-13
89574493	215	eukaryotic translation initiation factor	0.555	0.232	0.68	4e-13
209863134	215	eukaryotic translation initiation factor	0.555	0.232	0.68	4e-13
340709407	216	PREDICTED: eukaryotic translation initia	0.555	0.231	0.72	5e-13
350407151	216	PREDICTED: eukaryotic translation initia	0.555	0.231	0.72	6e-13
383856557	216	PREDICTED: eukaryotic translation initia	0.555	0.231	0.72	7e-13
328792666	216	PREDICTED: eukaryotic translation initia	0.555	0.231	0.72	7e-13
307215184	216	Eukaryotic translation initiation factor	0.555	0.231	0.72	8e-13
332029660	216	Eukaryotic translation initiation factor	0.555	0.231	0.72	1e-12
149689082	215	eukaryotic translation initiation factor	0.555	0.232	0.68	2e-12

>gi|322789771|gb|EFZ14937.1| hypothetical protein SINV_15354 [Solenopsis invicta]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 43/54 (79%)

Query: 35  ADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
            D  D+TL+ WVKKYGWKE +   IF+ANQDENIKTKNITEKI+FEN A +M +
Sbjct: 184 GDVDDATLKHWVKKYGWKEENKSIIFVANQDENIKTKNITEKIDFENVAGLMAA 237

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|89574493|gb|ABD76377.1| eukaryotic translation initiation factor 3 subunit 12-like protein [Acyrthosiphon pisum] gi|239789133|dbj|BAH71212.1| ACYPI000023 [Acyrthosiphon pisum]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
           D+ L+ W+ KY WKELDN YIF+ANQDENIKTKNITEKI++EN   +M S
Sbjct: 164 DAALKHWILKYNWKELDNKYIFVANQDENIKTKNITEKIDYENILGVMAS 213

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209863134|ref|NP_001119623.2| eukaryotic translation initiation factor 3, subunit K [Acyrthosiphon pisum]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
           D+ L+ W+ KY WKELDN YIF+ANQDENIKTKNITEKI++EN   +M S
Sbjct: 164 DAALKHWILKYNWKELDNKYIFVANQDENIKTKNITEKIDYENILGVMAS 213

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709407|ref|XP_003393301.1| PREDICTED: eukaryotic translation initiation factor 3 subunit K-like [Bombus terrestris]

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 41/50 (82%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
           D+TL+ WVKKYGWKE     IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 165 DTTLKHWVKKYGWKEESKSVIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407151|ref|XP_003488001.1| PREDICTED: eukaryotic translation initiation factor 3 subunit K-like [Bombus impatiens]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 41/50 (82%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
           D+TL+ WVKKYGWKE     IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 165 DTTLKHWVKKYGWKEESKSIIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856557|ref|XP_003703774.1| PREDICTED: eukaryotic translation initiation factor 3 subunit K-like [Megachile rotundata]

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 41/50 (82%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
           D+TL+ WVKKYGWKE     IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 165 DTTLKHWVKKYGWKEEGKSIIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792666|ref|XP_003251758.1| PREDICTED: eukaryotic translation initiation factor 3 subunit K-like [Apis mellifera] gi|380023491|ref|XP_003695554.1| PREDICTED: eukaryotic translation initiation factor 3 subunit K-like [Apis florea]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 40/50 (80%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
           D TL+ WVKKYGWKE     IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 165 DPTLKHWVKKYGWKEESKSIIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215184|gb|EFN89956.1| Eukaryotic translation initiation factor 3 subunit K [Harpegnathos saltator]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 41/50 (82%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
           D+TL+ WVKKYGWKE     IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 165 DATLKHWVKKYGWKEESKTIIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029660|gb|EGI69549.1| Eukaryotic translation initiation factor 3 subunit K [Acromyrmex echinatior]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 41/50 (82%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
           D+TL+ WVKKYGWKE     IFIANQDENIKTKNITEKI+FEN A +M +
Sbjct: 165 DATLKHWVKKYGWKEETKTIIFIANQDENIKTKNITEKIDFENVAGLMAA 214

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149689082|gb|ABR27872.1| eukaryotic translation initiation factor 3 subunit 12-like protein [Triatoma infestans]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 42/50 (84%)

Query: 39  DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
           D TL+ WV+KYGWKE+ N  IFIAN+DENIKTKNITEKI+F++ A IM +
Sbjct: 164 DHTLKHWVQKYGWKEIANNMIFIANRDENIKTKNITEKIDFDSVAGIMAT 213

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
UNIPROTKB|Q28C65	218	eif3k "Eukaryotic translation	0.533	0.220	0.583	3.9e-12
UNIPROTKB|Q6GNI4	218	eif3k "Eukaryotic translation	0.533	0.220	0.583	6.4e-12
ZFIN|ZDB-GENE-050417-45	219	zgc:110726 "zgc:110726" [Danio	0.533	0.219	0.5	1.5e-10
RGD|1309221	107	Eif3k "eukaryotic translation	0.533	0.448	0.5	3.2e-10
UNIPROTKB|Q3T0V3	218	EIF3K "Eukaryotic translation	0.533	0.220	0.5	5.2e-10
UNIPROTKB|E2R4Y6	218	EIF3K "Uncharacterized protein	0.533	0.220	0.5	5.2e-10
UNIPROTKB|K7EK53	131	EIF3K "Eukaryotic translation	0.533	0.366	0.5	5.2e-10
UNIPROTKB|K7ERF1	192	EIF3K "Eukaryotic translation	0.533	0.25	0.5	5.2e-10
UNIPROTKB|Q9UBQ5	218	EIF3K "Eukaryotic translation	0.533	0.220	0.5	5.2e-10
UNIPROTKB|F1RI41	218	EIF3K "Uncharacterized protein	0.533	0.220	0.5	5.2e-10

UNIPROTKB|Q28C65 eif3k "Eukaryotic translation initiation factor 3 subunit K" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 28/48 (58%), Positives = 38/48 (79%)

Query:    42 LRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
             LR+W+ KYGW E +NG IF+ NQ+ENIK KNI EKI+F++ + IM S+
Sbjct:   170 LRVWMSKYGWMESENGKIFVCNQEENIKPKNIVEKIDFDSVSGIMASS 217

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q6GNI4 eif3k "Eukaryotic translation initiation factor 3 subunit K" [Xenopus laevis (taxid:8355)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 28/48 (58%), Positives = 38/48 (79%)

Query:    42 LRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
             LR+W+ KYGW E +NG IF+ NQ+ENIK KNI EKI+F++ + IM S+
Sbjct:   170 LRVWMSKYGWIESENGKIFVCNQEENIKPKNIVEKIDFDSVSGIMASS 217

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

ZFIN|ZDB-GENE-050417-45 zgc:110726 "zgc:110726" [Danio rerio (taxid:7955)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 24/48 (50%), Positives = 39/48 (81%)

Query:    42 LRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
             +++W+ KYGW E ++G IFI NQ+E++K KNI EKI+FE+ ++IM ++
Sbjct:   171 VKVWMNKYGWTENEDGQIFIHNQEESVKPKNIVEKIDFESVSSIMATS 218

GO:0043022 "ribosome binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|1309221 Eif3k "eukaryotic translation initiation factor 3, subunit K" [Rattus norvegicus (taxid:10116)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 24/48 (50%), Positives = 38/48 (79%)

Query:    42 LRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
             LR+W+ KYGW   ++G +FI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct:    59 LRVWMSKYGWSADESGQVFICSQEESIKPKNIVEKIDFDSVSSIMASS 106

GO:0003743 "translation initiation factor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA;ISO

GO:0006413 "translational initiation" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q3T0V3 EIF3K "Eukaryotic translation initiation factor 3 subunit K" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 24/48 (50%), Positives = 38/48 (79%)

Query:    42 LRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
             L++W+ KYGW   ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct:   170 LKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

UNIPROTKB|E2R4Y6 EIF3K "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 24/48 (50%), Positives = 38/48 (79%)

Query:    42 LRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
             L++W+ KYGW   ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct:   170 LKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

UNIPROTKB|K7EK53 EIF3K "Eukaryotic translation initiation factor 3 subunit K" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 24/48 (50%), Positives = 38/48 (79%)

Query:    42 LRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
             L++W+ KYGW   ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct:    83 LKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 130

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

UNIPROTKB|K7ERF1 EIF3K "Eukaryotic translation initiation factor 3, subunit 12, isoform CRA_f" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 24/48 (50%), Positives = 38/48 (79%)

Query:    42 LRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
             L++W+ KYGW   ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct:   144 LKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 191

GO:0005634 "nucleus" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q9UBQ5 EIF3K "Eukaryotic translation initiation factor 3 subunit K" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 24/48 (50%), Positives = 38/48 (79%)

Query:    42 LRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
             L++W+ KYGW   ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct:   170 LKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

GO:0006446 "regulation of translational initiation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0006413 "translational initiation" evidence=IC;IDA;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1RI41 EIF3K "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 24/48 (50%), Positives = 38/48 (79%)

Query:    42 LRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
             L++W+ KYGW   ++G IFI +Q+E+IK KNI EKI+F++ ++IM S+
Sbjct:   170 LKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W2D9	EIF3K_DROME	No assigned EC number	0.5625	0.5333	0.2162	yes	N/A
Q7QGK4	EIF3K_ANOGA	No assigned EC number	0.54	0.5444	0.2217	yes	N/A
Q28C65	EIF3K_XENTR	No assigned EC number	0.5272	0.6111	0.2522	yes	N/A
Q3T0V3	EIF3K_BOVIN	No assigned EC number	0.5090	0.6111	0.2522	yes	N/A
Q292B6	EIF3K_DROPS	No assigned EC number	0.5833	0.5333	0.2162	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
KOG3252|consensus	217		99.97
PF10075	143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	99.55
KOG4414|consensus	197		82.43

>KOG3252|consensus

Probab=99.97  E-value=6.6e-33  Score=205.83  Aligned_cols=88  Identities=40%  Similarity=0.654  Sum_probs=85.0

Q ss_pred             hhhHHhHHHhhh--HHHHHHHHHhhcc--cccccccc-------CCCChHHHHHHHHHhCceEcCCeEEEecCCCCcccc
Q psy5244           2 DIVKSLQKACQG--ELQQSVRLSSCGP--STKDTKTK-------ADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKT   70 (90)
Q Consensus         2 ~~~~~~~~l~~~--gFedsVR~fi~~v--~Tfq~I~~-------~~l~d~~L~~~i~~~gW~~~~~g~i~~~N~dn~iKt   70 (90)
                      +++++||+++.+  |||||||+|+|||  +|||+|++       ||++|++|+.|++++||..+++|++|+++||++|||
T Consensus       118 ~~~~~N~~mle~itGFedsvr~yachvv~iTyQkI~k~lLaellG~~sDs~le~~~~~~GW~a~e~G~ifv~~qE~~iKt  197 (217)
T KOG3252|consen  118 QEADENRDMLEGITGFEDSVRKYACHVVGITYQKIDKWLLAELLGGLSDSQLEVWMTKYGWIADESGQIFVASQEEEIKT  197 (217)
T ss_pred             hhhccchHHhcCCCcHHHHHHHHHHHheechHhhchHHHHHHhhCcccHHHHHHHHHHccceecCCceEEEecccccccc
Confidence            467899999999  9999999999999  99999999       999999999999999999999999999999999999


Q ss_pred             cceeeeeccchHHHHhhcc
Q psy5244          71 KNITEKIEFENAATIMTSN   89 (90)
Q Consensus        71 k~I~EkI~fe~~~~ima~s   89 (90)
                      |||.|||+||++++||++.
T Consensus       198 kNi~EkI~fd~Va~ima~~  216 (217)
T KOG3252|consen  198 KNIVEKIDFDHVASIMASL  216 (217)
T ss_pred             CCccccCCcchHHHHHHhc
Confidence            9999999999999999874

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8

Probab=99.55  E-value=2.1e-15  Score=104.08  Aligned_cols=64  Identities=19%  Similarity=0.305  Sum_probs=44.8

Q ss_pred             HHHhhh--HHHHHHHHHhhcc--cccccccc------CCCChHHHHHHHHHhCceEcCCeEEEecCCCCcccccc
Q psy5244           8 QKACQG--ELQQSVRLSSCGP--STKDTKTK------ADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKN   72 (90)
Q Consensus         8 ~~l~~~--gFedsVR~fi~~v--~Tfq~I~~------~~l~d~~L~~~i~~~gW~~~~~g~i~~~N~dn~iKtk~   72 (90)
                      +.+...  ||+|.||.+|+++  .||++|+.      +|+++++|.+|+++.||+.++++++|+.||+ ++|+||
T Consensus        70 ~~~~~~v~~~~~~iR~~i~~~i~~aY~sIs~~~la~~Lg~~~~el~~~~~~~gW~~d~~~~~~~~~~~-~~k~k~  143 (143)
T PF10075_consen   70 PDYKPFVPGFEDTIRERIAHLISKAYSSISLSDLAEMLGLSEEELEKFIKSRGWTVDGDGVLFPPNPE-EIKSKN  143 (143)
T ss_dssp             -HHHHTSTTHHHHHHHHHHHHHHHH-SEE-HHHHHHHTTS-HHHHHHHHHHHT-EE-----EE---HH-HTS---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHhCCCHHHHHHHHHHcCCEECCCccEEecCCc-ccCCCC
Confidence            455555  9999999999999  99999999      9999999999999999999999999999999 999987

In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.

>KOG4414|consensus

Probab=82.43  E-value=0.99  Score=33.52  Aligned_cols=43  Identities=7%  Similarity=0.123  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhhcc--cccccccc------CCCChHHHHHHHHHhCceEcCC
Q psy5244          14 ELQQSVRLSSCGP--STKDTKTK------ADQTDSTLRLWVKKYGWKELDN   56 (90)
Q Consensus        14 gFedsVR~fi~~v--~Tfq~I~~------~~l~d~~L~~~i~~~gW~~~~~   56 (90)
                      -|.|+-|+..-..  +.|.+|-.      +||..++-..++-.+||+.+..
T Consensus       113 Af~D~~~kR~FaLl~qAYssI~~~D~A~FlGl~~ddAtk~ilEnGWqaDaa  163 (197)
T KOG4414|consen  113 AFRDATRKRAFALLLQAYSSIIADDFAAFLGLPEDDATKGILENGWQADAA  163 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcccchhhH
Confidence            6888888876555  99999987      9999999999999999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
1rz4_A	226	Crystal Structure Of Human Eif3k Length = 226		1e-08

>pdb|1RZ4|A Chain A, Crystal Structure Of Human Eif3k Length = 226

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 42  LRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 89
           L++W  KYGW   ++G IFI +Q+E+IK KNI EKI+F++ ++I  S+
Sbjct: 170 LKVWXSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIXASS 217

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
1rz4_A	226	Eukaryotic translation initiation factor 3 subuni;	9e-17

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18 Length = 226

 Score = 70.9 bits (173), Expect = 9e-17
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 36  DQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
           D +DS L++W+ KYGW   ++G IFI +Q+E+IK KNI EKI+F++ ++IM S
Sbjct: 164 DLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMAS 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
1rz4_A	226	Eukaryotic translation initiation factor 3 subuni;	99.92
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	97.51
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	97.46
2ccq_A	99	P97, peptide N-glycanase homolog; glycoprotein; 1.	83.23

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18

Probab=99.92  E-value=1.6e-26  Score=171.43  Aligned_cols=86  Identities=38%  Similarity=0.677  Sum_probs=77.2

Q ss_pred             hHHhHHHhhh--HHHHHHHHHhhcc--cccccccc------C-CCChHHHHHHHHHhCceEcCCeEEEecCCCCcccccc
Q psy5244           4 VKSLQKACQG--ELQQSVRLSSCGP--STKDTKTK------A-DQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKN   72 (90)
Q Consensus         4 ~~~~~~l~~~--gFedsVR~fi~~v--~Tfq~I~~------~-~l~d~~L~~~i~~~gW~~~~~g~i~~~N~dn~iKtk~   72 (90)
                      ++++++++..  ||+|+||++||++  +|||+|+.      | ++++++|++|++++||+.+++|.||++|+||++|+||
T Consensus       121 l~~~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~GW~vd~~g~I~~~n~e~~~k~~~  200 (226)
T 1rz4_A          121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKN  200 (226)
T ss_dssp             SCTTCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHHTCEECC--CEECCCHHHHTSCCC
T ss_pred             HhcChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHCCCEECCCccEEeCCCccccccee
Confidence            4455787877  9999999999999  99999997      5 7899999999999999998888889999999999999


Q ss_pred             eeeeeccchHHHHhhcc
Q psy5244          73 ITEKIEFENAATIMTSN   89 (90)
Q Consensus        73 I~EkI~fe~~~~ima~s   89 (90)
                      |+|||+||+++++|+++
T Consensus       201 ~~E~i~~~~~~~~~~~~  217 (226)
T 1rz4_A          201 IVEKIDFDSVSSIMASS  217 (226)
T ss_dssp             SSCCCCHHHHHHHHCC-
T ss_pred             eeecccHHHHHHHHHHH
Confidence            99999999999999875

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=97.51  E-value=7.6e-05  Score=54.32  Aligned_cols=49  Identities=12%  Similarity=0.028  Sum_probs=41.5

Q ss_pred             HHHHHHHHHhhcc--cccccccc------CCC-ChHHHHHHHHHhCceEcCCeEEEec
Q psy5244          14 ELQQSVRLSSCGP--STKDTKTK------ADQ-TDSTLRLWVKKYGWKELDNGYIFIA   62 (90)
Q Consensus        14 gFedsVR~fi~~v--~Tfq~I~~------~~l-~d~~L~~~i~~~gW~~~~~g~i~~~   62 (90)
                      -|.+.||.-++.+  .+|.+|+.      |++ +++++..|++++||+..++.++||.
T Consensus       171 ~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~dg~i~F~~  228 (229)
T 4b0z_A          171 IVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIRDGVIYFPK  228 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEETTEEECC-
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCCEEecCC
Confidence            6788999999999  89999998      888 5688999999999999866566663

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.46  E-value=3.8e-05  Score=57.65  Aligned_cols=54  Identities=11%  Similarity=0.103  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhhcc--cccccccc------CCC-ChHHHHHHHHHhCceEcCCeEEEecCCCCc
Q psy5244          14 ELQQSVRLSSCGP--STKDTKTK------ADQ-TDSTLRLWVKKYGWKELDNGYIFIANQDEN   67 (90)
Q Consensus        14 gFedsVR~fi~~v--~Tfq~I~~------~~l-~d~~L~~~i~~~gW~~~~~g~i~~~N~dn~   67 (90)
                      -|-+.||..|+.+  .+|.+|+.      |+. +++++.+|++++||+.++++++|+..++..
T Consensus       180 ~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~~~~v~F~~~~~~~  242 (274)
T 4b4t_T          180 ILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYFNNQSKEK  242 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHHTTCCCCSSCCCC-------
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCCEeEECCccccc
Confidence            7888999999999  89999998      777 668899999999999998888887665443

>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A

Probab=83.23  E-value=2  Score=27.58  Aligned_cols=36  Identities=11%  Similarity=0.070  Sum_probs=30.2

Q ss_pred             cccccccc---------CCCChHHHHHHHHHhCceEcCCeEEEecCC
Q psy5244          27 STKDTKTK---------ADQTDSTLRLWVKKYGWKELDNGYIFIANQ   64 (90)
Q Consensus        27 ~Tfq~I~~---------~~l~d~~L~~~i~~~gW~~~~~g~i~~~N~   64 (90)
                      --|++|..         +.+.++  .+++...||...+++++||.+.
T Consensus        39 ~KyR~Ir~~N~~f~~~v~~~~G~--~e~L~a~GF~~~~~~l~lp~~~   83 (99)
T 2ccq_A           39 EKYRSIRIGNTAFSTRLLPVRGA--VECLFEMGFEEGETHLIFPKKA   83 (99)
T ss_dssp             GGGGEEETTCHHHHHHTTTSTTH--HHHHHHHTCEECSSEEECCTTS
T ss_pred             cccceeecCCHHHHHHhcCCccH--HHHHHHccceeCCCeeecCCCC
Confidence            78999988         777776  5888889999998888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d1rz4a1	85	a.4.5.53 (A:132-216) Eukaryotic translation initia	5e-20

>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (183), Expect = 5e-20
 Identities = 26/50 (52%), Positives = 39/50 (78%)

Query: 39 DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
          DS L++W+ KYGW   ++G IFI +Q+E+IK KNI EKI+F++ ++IM S
Sbjct: 36 DSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMAS 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d1rz4a1	85	Eukaryotic translation initiation factor 3 subunit	100.0
d2jn6a1	89	Uncharacterized protein Cgl2762 {Corynebacterium g	90.9

>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=197.39  Aligned_cols=75  Identities=43%  Similarity=0.759  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhhcc--cccccccc-------CCCChHHHHHHHHHhCceEcCCeEEEecCCCCcccccceeeeeccchHHH
Q psy5244          14 ELQQSVRLSSCGP--STKDTKTK-------ADQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAAT   84 (90)
Q Consensus        14 gFedsVR~fi~~v--~Tfq~I~~-------~~l~d~~L~~~i~~~gW~~~~~g~i~~~N~dn~iKtk~I~EkI~fe~~~~   84 (90)
                      ||||+||+||||+  +|||+|++       |+++|++|++|++++||+.+++|++||+||||++|||||+|||+||++++
T Consensus         2 GFedsIR~~i~~vv~iTyq~I~~~~L~e~LG~~~d~~L~~~i~~~gW~~~~~g~v~v~nqe~~iK~kni~EkI~fe~v~~   81 (85)
T d1rz4a1           2 GFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSS   81 (85)
T ss_dssp             THHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHHTCEECC--CEECCCHHHHTSCCCSSCCCCHHHHHH
T ss_pred             cHHHHHHHHHHhheeeeeeEEcHHHHHHHhCCCCHHHHHHHHHHcCCEEcCCCEEEecChhhhcCccceeeeccHHHHHH
Confidence            8999999999999  99999999       45689999999999999999899999999999999999999999999999


Q ss_pred             Hhhc
Q psy5244          85 IMTS   88 (90)
Q Consensus        85 ima~   88 (90)
                      |||+
T Consensus        82 ima~   85 (85)
T d1rz4a1          82 IMAS   85 (85)
T ss_dssp             HHCC
T ss_pred             HhcC
Confidence            9985

>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Cgl2762-like
domain: Uncharacterized protein Cgl2762
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=90.90  E-value=0.067  Score=31.74  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=28.2

Q ss_pred             HHHHHHhhcc-cccccccc-CCCChHHHHHHHHHhC
Q psy5244          17 QSVRLSSCGP-STKDTKTK-ADQTDSTLRLWVKKYG   50 (90)
Q Consensus        17 dsVR~fi~~v-~Tfq~I~~-~~l~d~~L~~~i~~~g   50 (90)
                      ++||.+..+- .|+..|.+ +|++...|..|+++|+
T Consensus        13 ~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~k~~~   48 (89)
T d2jn6a1          13 DAVALYENSDGASLQQIANDLGINRVTLKNWIIKYG   48 (89)
T ss_dssp             HHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCcHHHHHHHHCCCHHHHHHHHHHHh
Confidence            5577776665 78888888 9999999999999984